Antibody-drug conjugates
Patent Information
- Application Number
- PCT/EP2024/079226
- Authority / Receiving Office
- WO · WO
- Patent Type
- Applications
- Current Assignee / Owner
- Priority Date
- 2024-09-13
- Filing Date
- 2024-10-16
- Publication Date
- 2025-06-19
AI Technical Summary
Current antibody-drug conjugates (ADCs) face challenges due to tumor heterogeneity and resistance, leading to recurrence, metastasis, and poor survival rates in cancer treatment.
Development of dual-drug ADCs that simultaneously deliver a DNA damage response (DDR) inhibitor and a DNA topoisomerase I (TOP1) inhibitor, using a linker-payload moiety to target specific antigens and enhance therapeutic efficacy.
The dual payload approach is expected to show improved, possibly synergistic, effects by overcoming resistance to TOP1 inhibitors and reducing overlapping toxicities, thereby enhancing therapeutic outcomes in cancer treatment.
Abstract
Description
[0001] Antibody-Drug Conjugates
[0002] Technical Field
[0003] The present disclosure relates to molecular biology, more specifically antibody technology. The present disclosure also relates to methods of medical treatment and prophylaxis, as well as branched moieties and their use in antibody drug-conjugates.
[0004] Background
[0005] Cancers remain the leading cause of deaths worldwide. Chemotherapies have good clinical benefits, but due to their low specificity they have very significant side effects and low therapeutic indices. More targeted therapies, such as monoclonal antibody therapies, show good specificity but response rates are smaller. Antibody-drug conjugates (ADCs) are a therapeutic modality that harness an antibody’s target specificity to selectively deliver cytotoxic payloads to tumors and are proving increasingly effective in the clinic.
[0006] While ADCs have proven successful in both solid and haematological cancers, resistance and tumor heterogeneity are major causes of failure clinically (Yamazaki et al., Nat Commun (2021) 12 (1): 3528). Tumor heterogeneity is known to lead to recurrence, metastasis, and acquired resistance to ADCs and other therapeutic strategies. Heterogenous tumors with differential drug sensitivities result in aggressive tumor growth, high relapse rates, and poor survival.
[0007] To combat these challenges, the majority of chemotherapeutic regimens consist of a combination of drugs. Co-delivery of small molecules can overcome resistance, generate additive or synergistic effects, and enhance therapeutic efficacy.
[0008] Emergence of tumors refractory to current therapies has given impetus to the evaluation of new ADC formats. This challenge has led to the exploration of dual-drug ADCs capable of delivering two mechanistically distinct payloads simultaneously. Strategies for the construction of dual-drug ADCs involve attachment of both drugs to one linker or through the use of two different conjugation sites on the antibody, and existing approaches are reviewed by Nervig etal., J. ADC. (2023) (DOI:
[0009] 10.14229 / jadc.2023.01 .05.001).
[0010] Summary
[0011] In a first aspect, the present disclosure provides an antigen-binding molecule that binds to a target antigen, comprising (i) a target antigen-binding moiety, and (ii) at least one linker-payload moiety, wherein the antigen-binding molecule comprises (a) DNA damage response (DDR) inhibitor moiety, and (b) a DNA topoisomerase I (TOP1) inhibitor moiety.
[0012] In some embodiments, the DDR inhibitor moiety is, or comprises, a DDR inhibitor selected from: an ATR inhibitor, a PARP inhibitor, an ATM inhibitor, a WEE1 inhibitor, a CHK1 / 2 inhibitor, a DNA-PK inhibitor, a PLK1 inhibitor, a Pol0 inhibitor, a RAD51 inhibitor, a USP inhibitor, a PKMYT1 inhibitor, or an Aurora-A inhibitor.
[0013] In some embodiments, the DDR inhibitor moiety is, or comprises, a DDR inhibitor which is an ATR inhibitor. In some embodiments, the DDR inhibitor moiety is, or comprises, berzosertib.
[0014] In some embodiments, the DDR inhibitor moiety is, or comprises, a DDR inhibitor which is a CHK1 / 2 inhibitor. In some embodiments, the DDR inhibitor moiety is, or comprises, prexasertib.
[0015] In some embodiments, the DDR inhibitor moiety is, or comprises, a DDR inhibitor which is a WEE1 inhibitor. In some embodiments, the DDR inhibitor moiety is, or comprises, adavosertib.
[0016] In some embodiments, the DDR inhibitor moiety is, or comprises, a DDR inhibitor which is an ATM inhibitor. In some embodiments, the DDR inhibitor moiety is, or comprises, AZD0156.
[0017] In some embodiments, the DDR inhibitor moiety is, or comprises, a DDR inhibitor which is a DNA-PK inhibitor. In some embodiments, the DDR inhibitor moiety is, or comprises, nedisertib.
[0018] In some embodiments, the TOP1 inhibitor moiety is, or comprises, a TOP1 inhibitor selected from: camptothecin or a derivative thereof, exatecan, exatecan mesylate (DX-8951f), A / -glycyl-exatecan, SN-38, DXd(1), DXd(2), irinotecan, etirinotecan, FL118, topotecan, gimatecan, belotecan, deruxtecan, belotecan, rubitecan, lurtotecan, diflomotecan, karenitecan, silatecan, namitecan, elomotecan, DRF-1042, delimotecan, NSC606985, chimmitecan, ZBH-1205, Genz-644282, non-CPT1 , indotecan, indimitecan, AZ14170132, SHR9265, Ed-04, KL610023, A1.9, ZD06519, P1003, P1021 , VIP126, ZBH-01 and LMP- 744.
[0019] In some embodiments, the TOP1 inhibitor moiety is, or comprises, a TOP1 inhibitor selected from: camptothecin or a derivative thereof, exatecan, exatecan mesylate (DX-8951f), A / -glycyl-exatecan, SN-38, DXd(1), DXd(2). In some embodiments, the TOP1 inhibitor moiety is, or comprises exatecan.
[0020] In some embodiments, the antigen-binding molecule comprises a linker-payload moiety comprising (a) a DDR inhibitor moiety, and (b) a TOP1 inhibitor moiety.
[0021] In some of these embodiments, the linker-payload moiety comprises:
[0022] (a) an amino group for conjugation to an antigen-binding moiety;
[0023] (b) at least one first payload comprising moiety clicked to a first click group, where the first payload comprising moiety comprises a DDR inhibitor moiety;
[0024] (c) at least one second payload comprising moiety clicked to a second click group, where the second payload comprising moiety comprises a TOP1 inhibitor moiety;
[0025] (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0026] In a second aspect, the present disclosure provides a tri-functional linker moiety comprising:
[0027] (a) an amino group for conjugation to an antigen-binding moiety;
[0028] (b) at least one first click group for connecting a first payload comprising moiety;
[0029] (c) at least one second click group for connection of a second payload comprising moiety;
[0030] (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0031] In a third aspect, the present disclosure provides a linker between:
[0032] (a) at least one first payload and at least one second payload; and
[0033] (b) an antigen-binding moiety; comprising a moiety derived from a compound of the second aspect.
[0034] Thus, the linker comprises:
[0035] (a) an amino group conjugated to an antigen-binding moiety;
[0036] (b) at least one first payload comprising moiety clicked to a first click group;
[0037] (c) at least one second payload comprising moiety clicked to a second click group;
[0038] (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0039] In a fourth aspect, the present disclosure provides a conjugate comprising:
[0040] (a) at least a first payload and at least a second payload;
[0041] (b) an antigen-binding moiety; wherein the linker between the payloads and the antibody comprises a moiety derived from a compound of the second aspect.
[0042] Thus, the conjugate comprises:
[0043] (a) an amino group conjugated to an antigen-binding moiety;
[0044] (b) at least one first payload comprising moiety clicked to a first click group;
[0045] (c) at least one second payload comprising moiety clicked to a second click group;
[0046] (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0047] In a fifth aspect, the present disclosure provides a linker-payload molecule comprising at least a first payload and at least a second payload for conjugation to an antigen-binding moiety, wherein the linker for conjugation to the antibody comprises a moiety derived from a compound of the second aspect.
[0048] Thus, the linker-payload molecule comprises:
[0049] (a) an amino group for conjugation to an antigen-binding moiety;
[0050] (b) at least one first payload comprising moiety clicked to a first click group;
[0051] (c) at least one second payload comprising moiety clicked to a second click group; (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0052] In a sixth aspect, the present disclosure provides a modified antigen-binding moiety comprising a moiety derived from a compound of the second aspect.
[0053] Thus, the modified antigen-binding moiety comprises:
[0054] (a) an amino group conjugated to an antigen-binding moiety;
[0055] (b) at least one first click group for connecting a first payload comprising moiety;
[0056] (c) at least one second click group for connection of a second payload comprising moiety;
[0057] (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0058] The present disclosure also provides a composition comprising an antigen-binding molecule according to the present disclosure, and a pharmaceutically acceptable carrier, diluent, excipient or adjuvant.
[0059] The present disclosure also provides an antigen-binding molecule according to the present disclosure, or a composition according to the present disclosure, for use in a method of medical treatment or prophylaxis, or in a method of diagnosis or prognosis.
[0060] The present disclosure also provides antigen-binding molecule according to the present disclosure, or a composition according to the present disclosure, for use in treating or preventing a cancer. The present disclosure also provides the use of an antigen-binding molecule according to the present disclosure, or a composition according to the present disclosure, in the manufacture of a medicament for treating or preventing a cancer.
[0061] The present disclosure also provides a method of treating or preventing a cancer, comprising administering to a subject a therapeutically- or prophylactically-effective amount of an antigen-binding molecule according to the present disclosure, or a composition according to the present disclosure.
[0062] In some embodiments, the cancer is a cancer comprising cells expressing / overexpressing the target antigen. In some embodiments, the cancer is a hematologic cancer. In some embodiments, the cancer is selected from: a myeloid hematologic cancer, lymphoma, Hodgkin’s lymphoma, non-Hodgkin’s lymphoma, AIDS-related lymphoma, cutaneous T cell lymphoma, mycosis fungicides, primary central nervous system lymphoma, Sezary syndrome, Waldenstrom macroglobulinemia, leukemia, T cell leukemia, B cell leukemia, acute myeloid leukemia, chronic myeloid leukemia, chronic myelomonocytic leukemia, acute promyelocytic leukemia, chronic promyelocytic leukemia, acute lymphoblastic leukemia, chronic lymphoblastic leukemia, hairy cell leukemia, myeloma, multiple myeloma, myelodysplastic syndrome, and a myeloproliferative disorder.
[0063] In some embodiments, the cancer is refractory or relapsed to treatment with a DDR inhibitor, and / or wherein the cancer is refractory or relapsed to treatment with a TOP1 inhibitor.
[0064] The present disclosure also provides the use of an antigen-binding molecule according to the present disclosure, or a composition according to the present disclosure, to deplete or increase killing of cells expressing the target antigen.
[0065] The present disclosure also provides an in vitro complex, optionally isolated, comprising an antigenbinding molecule according to the present disclosure bound to the target antigen.
[0066] Description
[0067] The antigen-binding molecules of the present disclosure are provided with unexpected and advantageous properties relative to known antibody-drug conjugates. In particular, DNA damage repair (DDR) is a key mode of resistance to Topoisomerase I (TOP1) DNA damaging agents, and the combination of both payloads into a single antibody drug conjugate is expected to show improved, possibly synergistic, effects. The dual payload ADC is also expected to possess advantageous properties compared to combining a chemotherapeutic DDR inhibitor with a TOP1 -inhibiting ADC, in reducing the overlapping toxicities of the chemotherapeutic DDR inhibitor and a TOP1 inhibiting ADC, such as neutropenia and thrombocytopenia. The dual DDR inhibitor, TOP1 inhibitor approach is also expected to mitigate against resistance to TOP1 inhibitors, which is sometimes observed on treatment with ADCs comprising a TOP1 inhibitor payload. Such resistance is described in Mosele, et al., Nat Med (2023) 29(8) 2110-2120 (PMID37488289); Zhang, et al., Br J Cancer (2021) 125(10) 1333-1340 (PMID34294893); Muai, et al., Mol Cell (2018) 69(3) 371-384 (PMID29395061). DDR inhibitor and TOP1 inhibitor combinations have also been shown preclinically and clinically to resensitize tumors to TOP1 inhibitors, restoring responsiveness to validated TOP1 inhibitor therapy. Josse etal., Cancer Res (2014) 74(23): 6968-6979 describes berzosertib (an ATR inhibitor) potentiating the effect of irinotecan in CRC CDX model, COLO205; Coussy et al., Sci Trans Med (2020) 12 (531): eaax2625 describes berzosertib (an ATR inhibitor) increasing sensitivity to irinotecan in SLFN11- negative, TNMC patient-derived xenograft tumors with BRCAness; Thomas et al., Cancer Cell (2021) 39(4): 566-579. e7 describes berzosertib (an ATR inhibitor) enhancing the efficacy of topotecan in chemotherapy-resistant SCLC patients; Slotkin, et al. (ASCO 2022 Abstract 11503) describes prexasertib (a CHK1 inhibitor) resensitising relapsed or refractory desmoplastic small round cell tumours to irinotecan. Further demonstration of the combination of DDR inhibitors and TOP1 inhibitors is shown below.
[0068] Linker-payload moieties
[0069] The present disclosure relates to antigen-binding molecules comprising a linker-payload moiety. As used herein, a linker-payload moiety refers to a moiety comprising one or more payload moieties, and a linker moiety for linking the payload moiety( / ies) to the antigen-binding region of the antigen-binding molecule.
[0070] In particular, the present disclosure relates to antigen-binding molecules comprising at least one linkerpayload moiety, wherein the antigen-binding molecule comprises (a) a payload moiety which is a DNA damage response (DDR) inhibitor, and (b) a payload moiety which is a DNA topoisomerase I (TOP1) inhibitor.
[0071] Hereinbelow, for conciseness, ‘a payload moiety which is a DDR inhibitor’ may be referred to simply as a ‘DDR inhibitor moiety’, and similarly ‘a payload moiety which is a TOP1 inhibitor’ may be referred to simply as a ‘TOP1 inhibitor moiety’.
[0072] The DNA Damage Response (DDR) is a complex network of mechanisms for detecting and repair DNA damage, in order to preserve genomic stability. The DDR is reviewed e.g. in Groelly et al., Nature Reviews Cancer (2023) 23:78-94 and Molinaro et al., Cancers (Basel). (2021) 13(15): 3819, both of which are hereby incorporated by reference in their entirety.
[0073] The detection of DNA damage and initiation of repair pathways is mediated by proteins such as ATM (Ataxia-Telangiectasia Mutated) and ATR (Ataxia-Telangiectasia and Rad3-Related). ATM is a protein kinase activated by double-strand breaks in DNA, and which initiates downstream signaling. ATR is activated by DNA damage and replication stress, and in particular responds to single-strand breaks and stalled DNA replication forks. CHK1 and CHK2 (Checkpoint Kinases 1 and 2) are downstream effectors of ATM and ATR, and phosphorylate various target proteins to stop cell cycle progression, and facilitate DNA repair. PARP (Poly ADP-Ribose Polymerase) is involved in repairing single-strand DNA breaks, helping to recruit repair factors and the formation of repair complexes at the sites of DNA damage. DNA- PK (DNA-Dependent Protein Kinase) helps bring broken DNA ends together for non-homologous end- joining (NHEJ), for repairing double-strand breaks. The DDR is facilitated by cell cycle regulation through WEE1 and PLK1 (Polo-Like Kinase 1). WEE1 is a kinase that phosphorylates and inhibits CDKs (Cyclin- Dependent Kinases), thereby delaying cell cycle progression and allowing more time for DNA damage repair prior to cell division. PLK1 regulates the cell cycle checkpoint and promotes repair processes, through phosphorylation of Pol0. RAD51 is an ATPase involved in DNA repair. Ubiquitin-specific proteases (USPs) modulate the DDR by influencing the ubiquitination of proteins involved in the DDR. Protein kinase membrane associated tyrosine / threonine 1 (PKMYT1) regulates cell cycle and participates in DDR-related signaling. Aurora-A may contribute to the G2 DNA damage checkpoint through PLK1 and CDC25B activation, and is important in the mitotic DNA damage response.
[0074] Most cancerous cells have a greater dependency on the DDR than non-cancerous cells. DDR inhibitors and their use for the treatment of cancers is described e.g. in Cheng et al., Eur J Med Chem. (2022) 230:114109, Wang eta!., Front Immunol. (2022) 13:854730 and Choi and Lee, Int J Mol Sci. (2022) 23(3):1701 , all of which are hereby incorporated by reference in their entirety.
[0075] In some embodiments, a DDR inhibitor moiety according to the present disclosure is, or comprises, a DDR inhibitor selected from:
[0076] (a) a PARP inhibitor (e.g. olaparib, rucaparib, niraparib, talazoparib, veliparib, pamiparib, simmiparib, senaparib, SC-10914, 2X-121 , AMXI-5001 , JPI-547, AZD5305, IDX-1197, TQB-3823, HWH-340, AsiDNA, STP-1002, RBN-2397, fluzoparib, NMS-03305293, AZD9574);
[0077] (b) an ATM inhibitor (e.g. CP-466722, KU-55933, KU-60019, KU-59403, AZ31 , AZ32, AZD0156, AZD1390, XRD-0394, M4076, M3541 , WSD-0628, SYH-2051 , IMP-08, SP-1161 , INT-6C4 / 5C4);
[0078] (c) an ATR inhibitor (e.g. M6620 (berzosertib), M4344 (VX-803), AZD6738 (ceralasertib), BAY1895344 (elimusertib), RP3500 (camonsertib), ATRN119, ART380, IMP9064, HRS2398, M1774, IMP9064, SC0245, LF0397, NU6027);
[0079] (d) a WEE1 inhibitor (e.g. adavosertib, Debio 0123, PD0166285, PD0407824, AZD1775, ZN-c3 (azenosertib), IMP7068, SY4835, SCO191 , IMP7068);
[0080] (e) a CHK1 / 2 inhibitor (e.g. CBP-501 , prexasertib, MK-8776, GDC-0575, SRA-737, PF-00477736, AZD7762, LY2603618 (rabusertib), LY2880070, XL884, BEBT260, MU380, NU7441 , KU-5778);
[0081] (f) a DNA-PK inhibitor (e.g. CC-115, LY-3023414, AsiDNA, M3814 (nedisertib, peposertib), VX-984 (M9831), BR-101801 , XRD-0394, SL901 , XZP-6877, IMP-11 , ZL-2201 , BR-2006, AZD7648, NU7441);
[0082] (g) a PLK1 inhibitor (e.g. BI-6727 (volasertib), PCM-075 (onvansertib), CYC140 (plogosertib));
[0083] (h) a Pole inhibitor (e.g. ART4215, ART6043, novobiocin, RP-6685, RP-3467);
[0084] (i) a RAD51 inhibitor (e.g. CYT0851);
[0085] (j) an inhibitor of a ubiquitin-specific protease (USP) family enzyme (e.g. an inhibitor of USP11 , USP7, USP4, USP37, USP39, USP45, USP24 and / or USP1 ; e.g. KSQ-4279);
[0086] (k) a PKMYT1 inhibitor (e.g. RP6306); and
[0087] (l) an Aurora-A inhibitor (e.g. alisertib, WJ05129 (JS112), JAB-2485).
[0088] In some embodiments, the DDR inhibitor moiety is, or comprises, ceralasertib. In some embodiments, the DDR inhibitor moiety is, or comprises, berzosertib:
[0089] In some embodiments, the DDR inhibitor moiety is, or comprises, prexasertib:
[0090] In some embodiments, the DDR inhibitor moiety is, or comprises, adavosertib, which can be linked as follows, as well as through other positions: In some embodiments, the DDR inhibitor moiety is, or comprises, AZD0156, which can be linked as follows, as well as through other positions:
[0091] In some embodiments, the DDR inhibitor moiety is, or comprises, nedisertib:
[0092] In some embodiments, the DDR inhibitor moiety is not, or does not comprise, veliparib. In some embodiments, where the DDR inhibitor moiety is or comprises a PARP inhibitor, the PARP inhibitor is not veliparib. In some embodiments, the DDR inhibitor moiety is not, or does not comprise, a PARP inhibitor.
[0093] During DNA replication and transcription, significant torsional strain is placed on the DNA helix, and this is relieved through the action of DNA topoisomerases I and II (TOP1 and TOP2), which cleave the DNA strand and allow it to untwist, before resealing the breaks (see e.g. Delgado et al., Biochem J. (2018) 475(2): 373-398). DNA topoisomerase inhibitors block the resealing step, resulting in DNA fragmentation and cell death. DNA topoisomerase I inhibitors and their use for the treatment of cancers is described e.g. in Pommier, Chem Rev. (2009) 109(7): 2894-2902, Li et al., Am J Cancer Res. (2017) 7(12): 2350-2394 and Thomas and Pommier, Clin Cancer Res. (2019) 25(22): 6581-6589, all of which are hereby incorporated by reference in their entirety.
[0094] In some embodiments, a TOP1 inhibitor moiety according to the present disclosure is, or comprises, a TOP1 inhibitor selected from: camptothecin or a derivative thereof, exatecan, exatecan mesylate (DX- 8951f), A / -glycyl-exatecan, SN-38, DXd(1), DXd(2), irinotecan, etirinotecan, FL1 18, topotecan, gimatecan, belotecan, deruxtecan, belotecan, rubitecan, lurtotecan, diflomotecan, karenitecan, Silat can, namitecan, elomotecan, DRF-1042, delimotecan, NSC606985, chimmitecan, ZBH-1205, Genz-644282, non-CPT1 , indotecan (LMP-400), indimitecan (LMP-776), AZ14170132, SHR9265, Ed-04, KL610023, A1.9, ZD06519, P1003, P1021 , VIP126, ZBH-01 and LMP-744.
[0095] In some embodiments, the TOP1 inhibitor moiety is not, or does not comprise, PBX-7016 described in WO 2023 / 249473 A1 (the structure of which is shown in Example 3 of WO 2023 / 249473 A1). In some embodiments, where the TOP1 inhibitor moiety is or comprises a camptothecin derivative, the camptothecin derivative is not PBX-7016 described in WO 2023 / 249473 A1 . In some embodiments, the TOP1 inhibitor moiety is not, or does not comprise, a camptothecin derivative described in WO 2023 / 249473 A1 .
[0096] In some embodiments, the TOP1 inhibitor moiety is, or comprises, exatecan:
[0097]
[0098] In some embodiments, the TOP1 inhibitor moiety is, or comprises, belotecan:
[0099] In some embodiments, the TOP1 inhibitor moiety is, or comprises, SN38:
[0100] In some embodiments, the TOP1 inhibitor moiety is, or comprises, DXd: A linker moiety according to the present disclosure may be any moiety suitable for linking the payload moiety to the antigen-binding region of the antigen-binding molecule of the present disclosure.
[0101] Accordingly, they generally comprise a group enabling connection to the payload moiety, a group connecting conjugation to the antigen-binding region of the antigen-binding molecule, and a linker core.
[0102] In some embodiments, the antigen-binding molecule of the present disclosure does not comprise veliparib, and does not comprise PBX-7016 described in WO 2023 / 249473 A1.
[0103] Linker moieties are described e.g. in Su et al., Acta Pharmaceutica Sinica B (2021) 11 (12): 3889-3907, Fu et al., Signal Transduction and Targeted Therapy (2022) 7:93.
[0104] Payload comprising moieties
[0105] A payload comprising moiety according to the present disclosure may comprise a payload, and a linker moiety between the payload and a click group, which click group is selected from the click group pairs described below. The linker moiety may be a cleavable linker moiety or a non-cleavable moiety.
[0106] A linker moiety according to the present disclosure may be a cleavable linker moiety or a non-cleavable moiety.
[0107] Cleavable linkers typically utilise differences between the environment of systemic circulation and that in cancer cells / the tumor microenvironment to release the payload moiety in a targeted manner. Cleavable linkers include chemical cleavage linkers (e.g. acid-cleavable linkers, GSH-cleavable linkers, Fe(ll)- cleavable linkers) and enzyme cleavage linkers (e.g. cathepsin-cleavable linkers, glycosidase-cleavable linkers, phosphatase-cleavable linkers, sulfatase-cleavable linkers).
[0108] In some embodiments, a linker moiety according to the present disclosure is a chemical cleavage linker. In some embodiments, a linker moiety according to the present disclosure is an enzyme cleavage linker. In some embodiments, a linker moiety is an acid-cleavable linker, e.g. comprising a hydrazone group (e.g. a 6-maleimidocaproylhydrazone linker or a (4-(4-acetylphenoxy)butanoic acid) hydrazaone linker), a carbonate group or a silyl ether group. In some embodiments, a linker moiety is a GSH-cleavable linker, e.g. comprising a disulfide group. In some embodiments, a linker moiety is a Fe(ll)-cleavable linker, e.g. comprising a 1 ,2,4-trioxolane group. In some embodiments, a linker moiety is a cathepsin-cleavable linker, e.g. comprising a dipeptide (e.g. a valine-citrulline linker, a phenylalanine-lysine linker or a valinealanine linker), a triglycyl peptide (CX) or a cBu-Cit group. In some embodiments, the linker moiety is GGFG (Glycine-Glycine-Phenylalanine-Glycine). In some embodiments, a linker moiety is a glucuronidase-cleavable linker, e.g. comprising a p-glucuronide group. In some embodiments, a linker moiety is a glycosidase-cleavable linker, e.g. comprising a p-galactoside group. In some embodiments, a linker moiety is a phosphatase-cleavable linker, e.g. comprising a pyrophosphate group. In some embodiments, a linker moiety is a sulfatase-cleavable linker, e.g. comprising an arylsulfate group. In some embodiments, a linker moiety is a photo-responsive linker, e.g. comprising a heptamethine cyanine fluorophore group, an O-nitrobenzyl group or a PC4AP group. In some embodiments, a linker moiety is a biorthogonal cleavable linker, e.g. comprising a dsProc group.
[0109] Non-cleavable linkers remain inert in common chemical and enzymatic environments in the body, with the payload moiety being released following processing of the ADC by cellular lysosomal proteases. Non- cleavable linkers include linkers comprising thioether or maleimidocaproyl groups.
[0110] In some embodiments, a linker moiety is a thioether linker. In some embodiments, a linker moiety is a maleimidocaproyl linker, e.g. comprising a 2-(maleimidomethyl)-1 ,3-dioxane (MD) group or a Mal-PAB group. In some embodiments, a linker moiety comprises a polyethylene glycol (PEG) group and an alkyne, triazole or piperazine group.
[0111] In some embodiments, a linker-payload moiety according to the present disclosure has an amino (-NH2) group for linkage to the antigen-binding moiety, for example by enzymatic conjugation. In some of these embodiments, enzymatic conjugation with microbial transglutaminase may be used to conjugate the linker-payload moiety to the antigen-binding moiety.
[0112] In some embodiments, a linker moiety further comprises a spacer moiety. Spacer moieties are sometimes required due to the bulky nature of payload moieties. Commonly employed spacer moieties include paraaminobenzyl carbamate (PABC), hemiaminal groups, PEG groups, polar acyl sulfamide groups, polar carbamoyl sulfamide groups and HydraSpace (described e.g. in Verkade et al., Antibodies (Basel) (2018) 7(1):12 and WO 2016 / 053107 A1 , both of which are hereby incorporated by reference in their entirety). PABC is commonly employed as a spacer moiety in cathepsin-cleavable dipeptide linkers, p- glucuronidase-cleavable linkers, p-galactosidase-cleavable linkers and phosphatase cleavable linkers. In some embodiments, para-aminobenzyl (PAB) is used as a spacer group.
[0113] A payload moiety according to the present disclosure may comprise or consist of a cytotoxic agent. Such payload moieties are described e.g. in Parslow et al., Biomedicines. 2016 Sep; 4(3):14, Goundry and Parker, Org. Process Res. Dev. (2022) 26, 8, 2121-2123, Fu et al., Signal Transduction and Targeted Therapy (2022) 7:93, Wang et al., Acta Pharmaceutica Sinica B (2023) 13 (10): 4025-4059 and Conilh et al., J. Hematol. & Oncol. (2023) 16:3, all of which are hereby incorporated by reference in their entirety.
[0114] A payload moiety according to the present disclosure may comprise or consist of a non-cytotoxic agent. Such payload moieties are described e.g. in Liu et al., Expert Opinion on Biological Therapy. 2016 16 (5), 591- 593 (doi:10.1517 / 14712598.2016.1161753); Yu et al., (2018). Next Horizons: ADCs Beyond Oncology. In: Damelin, M. (eds) Innovations for Next-Generation Antibody-Drug Conjugates. Cancer Drug Discovery and Development (doi: 10.1007 / 978-3-319-78154-9_14); McPherson & Hobson, in Methods in Molecular Biology. 2019, 2078, 23-36 (doi: 10.1007 / 978-1-4939-9929-3_2); Hobson, Progress in Medicinal Chemistry. 2023 Volume 62, 1-59 (doi: 10.1016 / bs.pmch.2023.10.001), all of which are hereby incorporated by reference in their entirety. In some embodiments, a payload moiety according to the disclosure may comprise or consist of a immunological agent, such as: non-steroidal agents, e.g. PDE4 inhibitors, LXR agonists, tyrosine-kinase inhibitors, bisphosphonates; steroidal agents, e.g. glucocorticoid receptor modulators (GRM); immunostimulatory agents, e.g. TLR7 / 8 agonists, TLR4 agonists, TLR9 agonists, STING agonists, kinesin spindle kinase (KSP) inhibitors. Other immunological agents include kinase inhibitors, growth factor inhibitors (e.g. EGFR , PDGF, VEGF inhibitors), Calcineurin inhibitors, CRAC inhibitors , PARP1 antagonists, PPARy agonists, Kv1.3 antagonists, PP2A agonists, MYD88 inhibitors, BCL-2 inhibitors, Adenosine A2A receptor (A2ar) agonists, calcium-activated potassium channel (Kca3.1) agonists, TGF- R1 inhibitors, TGF-R2 inhibitors, GLi 1 inhibitors, tankyrase (TNKS) antagonists, Traf2 and Nck- interacting kinase (TNIK) antagonists , imides, and vitamin D receptor (VDR) agonists.
[0115] In some embodiments, a payload moiety according to the disclosure may comprise or consist of a HDAC inhibitor, a NAMPT inhibitor or a DHFR agent.
[0116] In some embodiments, a payload moiety according to the disclosure may comprise or consist of an antibiotic, an amantin, or a matrix metalloproteinase (MMP).
[0117] In some embodiments, a payload moiety according to the disclosure may comprise or consist of an amyloid beta plaque-degrading agent. In some embodiments, a payload moiety may comprise or consist of a tau protein aggregate-degrading agent.
[0118] In some embodiments, a payload moiety according to the disclosure may comprise or consist of an atherosclerotic plaque-stabilising agent.
[0119] In some embodiments, a payload moiety according to the disclosure may comprise or consist of an adipose tissue-degrading agent. In some embodiments, a payload moiety may comprise or consist of an insulin resistance-modulating agent or a metabolic pathway-activating agent.
[0120] In some embodiments, a payload moiety according to the disclosure may comprise or consist of a clotting factor. In some embodiments, a payload moiety may comprise or consist of an erythropoiesis-stimulating agent.
[0121] In some embodiments, a payload moiety according to the disclosure may comprise or consist of an extracellular matrix-degrading agent.
[0122] In some embodiments, a payload moiety according to the present disclosure may comprise or consist of a microtubule-targeting agent, a DNA-targeting agent, an RNA-targeting agent, an immune systemactivating agent, an apoptosis-promoting agent, a metabolism-inhibiting agent and a proteasome inhibiting agent. In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a microtubule-targeting agent. Microtubules play important roles in maintaining proper cellular morphology, signal transduction, organelle transportation, cell motility and cell division. Microtubules are formed of tubulin, and agents that disrupt the tubulin polymerization dynamics, resulting in cell cycle arrest and apoptosis. Tubulin inhibitors have a stronger toxicity to rapidly-dividing cancerous cells than slower- growing, non-cancerous cells. Microtubule-targeting agents include tubulin polymerization enhancers (e.g. auristatins, taxanes), and tubulin polymerization inhibitors (e.g. maytansinoids, colchicine). In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a maytansinoid, e.g. maytansine or a derivative thereof, e.g. mytansine, DM1 (mertansine) or DM4 (ravtansine). In some embodiments, a payload moiety comprises, or consists of colchicine or a derivative thereof. In some embodiments, a payload moiety comprises, or consists of, an auristatin, e.g. a dolastatin 10 derivative, e.g. monomethyl auristatin E (MMAE), monomethyl auristatin F (MMAF), auristatin PE, auristatin PYE, PF-06380101 , auristatin F-hydroxypropylamide (AF-HPA) or azastatin. In some embodiments, a payload moiety comprises, or consists of, a halichondrin B derivative, e.g. eribulin. In some embodiments, a payload moiety comprises, or consists of, a tubulysin or a derivative thereof, e.g. tubulysin A, D, H, U or V. In some embodiments, a payload moiety comprises, or consists of, a cryptophycin or a derivative thereof, e.g. cryptophycin-1 , cryptophycin-52, cryptophycin-55 or cryptophycin-55gly. In some embodiments, a payload moiety comprises, or consists of, an EG5 ( / .e. kinesin / KSP / KIF11) inhibitor, e.g. ispinesib (SB715992) or a derivative thereof, or filanesib (ARRY-520) or a derivative thereof. In some embodiments, a payload moiety comprises, or consists of, a taxane, e.g. paclitaxel, docetaxel or cabazitaxel. In some embodiments, a payload moiety comprises, or consists of vinca alkaloid, e.g. vinblastine, vincristine, vindesine, vinorelbine or vinflunine. In some embodiments, a payload moiety comprises, or consists of hemiasterlin or a derivative thereof, e.g. hemiasterlin, hemisterlin A or HTI-286.
[0123] In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a DNA-targeting agent. DNA-targeting agents include agents that directly or indirectly destroy DNA through introducing / promoting the formation of single- and / or double-strand breaks (e.g. enediynes, topoisomerase inhibitors), DNA alkylating agents (e.g. pyrrolo[2,1-c][1 ,4] benzodiazepines, indolinobenzodiazpines, duocarmycins), and DNA crosslinking agents (e.g. mitomycin C). In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, an enediyne, e.g. a Cal-like enediyne or an anthraquinone fusion enediyne, e.g. calciheamicin y'i , calciheamicin 0'i or uncialamycin. In some embodiments, a payload moiety comprises, or consists of, a topoisomerase inhibitor, e.g. a TOP1 or TOP2 inhibitor, e.g. camptothecin or a derivative thereof, e.g. SN- 38, exatecan, exatecan mesylate (DX-8951f), A / -glycyl-exatecan or deruxtecan (Dxd); e.g. an anthracycline, e.g. doxorubicin, daunorubicin, epirubicin, PNU-159682 or idarubicin. In some embodiments, a payload moiety comprises, or consists of, a pyrrolo[2,1-c][1 ,4] benzodiazepine (PBD) dimer, or a derivative thereof, e.g. a PDB, KMR-28-39, SJG-136 SGD-1882 or SG3199 dimer. In some embodiments, a payload moiety comprises, or consists of, indolinobenzodiazpine (IGN; monoimine) or a derivative thereof. In some embodiments, a payload moiety comprises, or consists of, a pyridinobenzodiazepine (PDD) dimer, or a derivative thereof, e.g. a PDD or FGX5-67 dimer. In some embodiments, a payload moiety comprises, or consists of, a duocarmycin or a derivative thereof, e.g. duocarmycin A, CC1065, duocarmycin SA, DUBA, seco-DIBA or seco-CBI. In some embodiments, a payload moiety comprises, or consists of, mitomycin C.
[0124] In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a RNA-targeting agent. Small molecule inhibitors that target RNA can kill both dividing and dormant tumor cells. RNA-targeting agents include RNA splicing inhibitors (e.g. thailanstatin and derivatives thereof) and RNA polymerase II inhibitors (e.g. amatoxins, RNA polymerase ll-IN-2). In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, thailanstatin or a derivative thereof, e.g. thailanstatin A, thailanstatin B, thailanstatin C or FR901464. In some embodiments, a payload moiety comprises, or consists of, an amatoxin, e.g. a-amanitin or p-amanitin. In some embodiments, a payload moiety comprises, or consists of, RNA polymerase ll-IN-2.
[0125] In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, an immune system-activating agent. Immune-stimulating antibody conjugates (ISACs) employ small molecule-based engagement of the innate and / or adaptive immune systems. A variety of immune- modulating payloads are in development, including Toll-like receptor (TLR) agonists, stimulator of interferon genes (STING) agonists and glucocorticoid receptor modulators (GRMs). In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a TLR agonist, e.g. an agonist of TLR7, TLR8 or TLR9. In some embodiments, a payload moiety comprises, or consists of, a STING agonist, e.g. a cyclic dinucleotide (CDN; e.g. 2,3 cGAMP; 3,3 cGAMP; c-di-GMP or c-di-AMP) or a benzimidazole. In some embodiments, a payload moiety comprises, or consists of, a glucocorticoid receptor modulator, e.g. dexamethasone or a derivative thereof.
[0126] In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, an apoptosis-promoting agent. Anti-apoptotic proteins such as Bcl-xL can play important roles in tumorigenesis, metastasis and drug resistance. In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a Bcl-xL inhibitor. In some embodiments, a payload moiety comprises, or consists of, ABT-737.
[0127] In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a metabolism-inhibiting agent. Metabolism-inhibiting agents such as niacinamide phosphate ribose transferase (NAMPT) inhibitors control the concentration of NAD+ within cells, inducing energy crisis and cell death, and antifolate antimetabolites such as methotrexate, that inhibit dihydrofolate reductase (DHFR) and thereby DNA synthesis. In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a NAMPT inhibitor, e.g. FK-866 or A-1293201 . In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a DHFR inhibitor, e.g. methotrexate of a derivative thereof.
[0128] In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a proteasome-inhibiting agent. Proteasome-inhibiting agents include carmaphycins. In some embodiments, a payload moiety according to the present disclosure comprises, or consists of, a carmaphycin or a derivative thereof, e.g. carmaphycin A or carmaphycin B.
[0129] In some embodiments, an antigen-binding molecule according to the present disclosure comprises a linker-payload moiety, which in turn comprises both a DDR inhibitor moiety and a TOP1 inhibitor moiety. That is, in some embodiments, the antigen-binding molecule comprises a linker-payload moiety comprising: (a) a DDR inhibitor moiety, and (b) a TOP1 inhibitor moiety. In some embodiments, the DDR inhibitor moiety and TOP1 inhibitor moieties are provided in the same linker-payload moiety. In some embodiments, the DDR inhibitor moiety and the TOP1 inhibitor moiety are connected to the antigenbinding moiety of the antigen-binding molecule via the same linker moiety.
[0130] Approaches for the attachment of multiple payload moieties to a single linker moiety are described e.g. in Yamazaki, et al., Nat Commun. (2021) 12(1): 3528, Kumar et al., Bioorg Med Chem Lett (2018) 28 (23- 24): 3617-3621 , Levengood, et al., Angew Chem Int Ed Engl (2017) 56(3): 733-737 and Wang et al., Acta Pharmaceutica Sinica B (2023) 13(10): 4025-4059, all of which are hereby incorporated by reference in their entirety.
[0131] In some embodiments, the DDR inhibitor and TOP1 inhibitor payload moieties are provided in the same linker-payload moiety. In some embodiments, the DDR inhibitor and TOP1 inhibitor payload moieties are connected to the antigen-binding moiety of the antigen-binding molecule through the same linker moiety.
[0132] In some embodiments, the DDR inhibitor and TOP1 inhibitor payload moieties are connected to the antigen-binding moiety of the antigen-binding molecule through a branched linker moiety. The linker may comprise of multiple branches to allow for DAR flexibility.
[0133] In some embodiments, the DDR inhibitor and TOP1 inhibitor payload moieties are connected to the antigen-binding moiety of the antigen-binding molecule through a linker moiety that has increased hydrophilicity.
[0134] In some embodiments, the DDR inhibitor and TOP1 inhibitor payload moieties are connected to the antigen-binding moiety of the antigen-binding molecule through a branched hydrophilic linker moiety.
[0135] In some embodiments, the DDR inhibitor moiety and the TOP1 inhibitor moiety are connected to the linker moiety of the linker-payload moiety via orthogonal functional groups. In some embodiments, the linker-payload moiety comprises a trifunctional linker moiety providing for linkage of an antigen-binding moiety to two different payload moieties. Such approaches to the production of a linker-payload moiety comprising two different payloads are described e.g. in Yamazaki, et al., Nat Commun. (2021) 12(1): 3528 and Kumar et al., Bioorg Med Chem Lett (2018) 28 (23-24): 3617-3621.
[0136] Kumar et al., Bioorg Med Chem Lett (2018) 28 (23-24): 3617-3621 describes a branched linker moiety comprising: (a) a group for connection to an antigen-binding moiety (which is a self-stabilizing N-aryl maleimide); and
[0137] (b) two orthogonal functional groups for linking payload moieties, which are:
[0138] (i) an alkyne group, for incorporation of a payload moiety via copper-mediated azide-alkyne cycloaddition (CuAAC), and
[0139] (ii) a ketone group, for incorporation of a payload moiety via for aminooxy reaction resulting in oxime linkage.
[0140] The branched linker moiety described in Kumar et al., Bioorg Med Chem Lett (2018) 28 (23-24): 3617-
[0141] 3621 has the following structure:
[0142] Accordingly, in some embodiments a linker-payload moiety according to the present disclosure comprises a linker moiety comprising: (i) a moiety derived from a group for connection to the antigen-binding moiety (e.g. a self-stabilizing N-aryl maleimide group), (ii) a moiety derived from an alkyne group suitable for incorporating a first payload moiety via CuAAC (i.e. a divalent triazole), and (iii) a moiety derived from a ketone group suitable for incorporating a second payload moiety via aminooxy reaction resulting in oxime linkage (i.e. an oxime) . In accordance with such embodiments, in some cases the first payload moiety is a DDR inhibitor moiety as described herein, and the second payload moiety is a TOP1 inhibitor moiety as described herein. In some embodiments, the first payload moiety is a TOP1 inhibitor moiety as described herein, and the second payload moiety is a DDR inhibitor moiety as described herein.
[0143] In some embodiments, an antigen-binding molecule according to the present disclosure comprises a linker-payload moiety comprising: (i) a first payload moiety conjugated to the linker moiety via a CuAAC reaction between an azide group and an alkyne group, and (ii) a second payload moiety conjugated to the linker moiety oxime linkage between an alkoxyamine or hydrazide group, and a ketone group. In accordance with such embodiments, in some cases the first payload moiety is a DDR inhibitor moiety as described herein, and the second payload moiety is a TOP1 inhibitor moiety as described herein. In some embodiments, the first payload moiety is a TOP1 inhibitor moiety as described herein, and the second payload moiety is a DDR inhibitor moiety as described herein.
[0144] Yamazaki, et al., Nat Commun. (2021) 12(1): 3528 describes a branched linker moiety comprising:
[0145] (a) a group for connection to an antibody (which is lysine-based); and
[0146] (b) two orthogonal functional groups for linking payload moieties, which are:
[0147] (i) one or two azide groups for incorporation of a payload moiety via strain-promoted azidedibenzocyclooctyne (DBCO) cycloaddition; and (ii) a methyltetrazine group for incorporation of a payload moiety via trans-cyclooctene (TCO) cycloaddition.
[0148] The branched linker moiety described in Yamazaki, et al., Nat Commun. (2021) 12(1): 3528 has the following structure:
[0149] Accordingly, in some embodiments a linker-payload moiety according to the present disclosure comprises a linker moiety comprising: (i) a moiety derived from a group for connection to the antigen-binding moiety (e.g. a lysine-based group), (ii) one or two moieties derived from azide groups suitable for incorporating a first payload moiety via DBCO cycloaddition, and (iii) a moiety derived from a methyltetrazine group for incorporation of a second payload moiety via TCO cycloaddition. In accordance with such embodiments, in some cases the first payload moiety is a DDR inhibitor moiety as described herein, and the second payload moiety is a TOP1 inhibitor moiety as described herein. In some embodiments, the first payload moiety is a TOP1 inhibitor moiety as described herein, and the second payload moiety is a DDR inhibitor moiety as described herein.
[0150] In some embodiments, an antigen-binding molecule according to the present disclosure comprises a linker-payload moiety comprising: (i) a first payload moiety conjugated to the linker moiety via a DBCO cycloaddition reaction between a DBCO group and an azide group; and (ii) a second payload moiety conjugated to the linker moiety via a TCO cycloaddition reaction between a TCO group and a methyltetrazine group. In accordance with such embodiments, in some cases the first payload moiety is a DDR inhibitor moiety as described herein, and the second payload moiety is a TOP1 inhibitor moiety as described herein. In some embodiments, the first payload moiety is a TOP1 inhibitor moiety as described herein, and the second payload moiety is a DDR inhibitor moiety as described herein.
[0151] In some embodiments, the DDR inhibitor moiety and the TOP1 inhibitor moiety are connected to a linker moiety of the linker-payload moiety via cysteine groups. Such an approach to the production of a linkerpayload moiety comprising two different payloads is described e.g. in Levengood, etal., Angew Chem Int Ed Engl (2017) 56(3): 733-737. Levengood, et al., Angew Chem Int Ed Engl (2017) 56(3): 733-737 describes a linker-payload moiety comprising two different payload moieties, constructed by sequential deprotection of orthogonally- protected cysteines. Each payload is connected to a maleimide group (for example with a cleavable linker), and the maleimide undergoes a Michael reaction with the deprotected cysteines. The branched linker moiety described in Levengood, et al., Angew Chem Int Ed Engl (2017) 56(3): 733-737 has the following structure:
[0152] Accordingly, in some embodiments a linker-payload moiety according to the present disclosure comprises: (i) a first payload moiety conjugated to the linker-payload moiety via reduction of a cysteine residue bearing a protecting disulfide group (e.g. a S-(tert-buty I) disulfide group or S-(isopropyl) disulfide group), and subsequent incorporation of the first payload moiety via thiol-maleimide reaction; and (ii) a second payload moiety conjugated to the linker-payload moiety via reduction of a cysteine residue bearing a protecting acetamidomethyl group, and subsequent incorporation of the first payload moiety via thiol-maleimide reaction. In accordance with such embodiments, in some cases the first payload moiety is a DDR inhibitor moiety as described herein, and the second payload moiety is a TOP1 inhibitor moiety as described herein. In some embodiments, the first payload moiety is a TOP1 inhibitor moiety as described herein, and the second payload moiety is a DDR inhibitor moiety as described herein.
[0153] In some of these embodiments, the linker-payload moiety comprises:
[0154] (a) an amino group for conjugation to an antigen-binding moiety;
[0155] (b) at least one first payload comprising moiety clicked to a first click group, where the first payload comprising moiety comprises a DDR inhibitor moiety;
[0156] (c) at least one second payload comprising moiety clicked to a second click group, where the second payload comprising moiety comprises a TOP1 inhibitor moiety;
[0157] (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0158] In some embodiments, the DDR inhibitor moiety and the TOP1 inhibitor moiety of the antigen-binding molecule of the present disclosure are connected to the antigen-binding moiety of the antigen-binding molecule via different linker moieties.
[0159] In some embodiments, an antigen-binding molecule according to the present disclosure comprises: (a) a linker-payload moiety comprising a DDR inhibitor moiety, and (b) a linker-payload moiety comprising a TOP1 inhibitor moiety. That is, in some embodiments, the antigen-binding molecule comprises at least two linker-payload moieties, wherein one of the linker-payload moieties comprises a DDR inhibitor moiety, and wherein another of the linker-payload moieties comprises a TOP1 inhibitor moiety.
[0160] Approaches for the attachment of multiple payload moieties to an antigen-binding moiety via multiple linker moieties are described e.g. in Swiderska et al., Inti J Mol Sci (2018) 19: 2098, Nilchan et al., Antib. Ther. (2019) 2:71-78 and Wang et al., Acta Pharmaceutica Sinica B (2023) 13(10): 4025-4059, all of which are hereby incorporated by reference in their entirety.
[0161] Swiderska et al., Inti J Mol Sci (2018) 19: 2098 describes an approach in which (i) a first linker-payload moiety (specifically maleimide-Val-Cit-PAB-a-amanitin) is conjugated to a cysteine residue of a polypeptide via thiol-maleimide reaction, and in which (ii) a second linker-payload moiety (specifically an azide linked to MMAE) is conjugated to the same polypeptide via CuAAC-mediated conjugation to the alkyne group of an engineered N-propargyl-L-lysine (PrK) residue.
[0162] Accordingly, in some embodiments an antigen-binding molecule according to the present disclosure comprises: (i) a first linker-payload moiety conjugated to the antigen-binding moiety via thiol-maleimide reaction between a cysteine residue of the antigen-binding moiety and a maleimide group of the linkerpayload moiety, and (ii) a second linker-payload moiety conjugated via CuAAC reaction between an azide group of the linker-payload moiety to the alkyne group of an N-propargyl-L-lysine residue of the antigenbinding moiety. In accordance with such embodiments, in some cases the first linker-payload moiety comprises a DDR inhibitor moiety as described herein, and the second linker-payload moiety comprises a TOP1 inhibitor moiety as described herein. In some embodiments, the first linker-payload moiety comprises a TOP1 inhibitor moiety as described herein, and the second linker-payload moiety comprises a DDR inhibitor moiety as described herein.
[0163] Nilchan et al., Antib. Ther. (2019) 2:71-78 describes a dual conjugation approach in which (i) a first linkerpayload moiety is conjugated to an antigen-binding moiety via selenoether conjugation between a selenocysteine residue of the antigen-binding moiety and an iodoacetamide group of the linker-payload moiety, and in which (ii) a second linker-payload moiety is conjugated to the same antigen-binding moiety via reaction between a cysteine residue of the antigen-binding moiety and a methylsulfone phenyloxadiazole (MSODA) group of the linker-payload moiety.
[0164] Accordingly, in some embodiments an antigen-binding molecule according to the present disclosure comprises: (i) a first linker-payload moiety conjugated to the antigen-binding moiety via selenoether conjugation between a selenocysteine residue of the antigen-binding moiety and an iodoacetamide group of the linker-payload moiety, and (ii) a second linker-payload moiety conjugated via reaction between a cysteine residue of the antigen-binding moiety and a MSODA group of the linker-payload moiety. In accordance with such embodiments, in some cases the first linker-payload moiety comprises a DDR inhibitor moiety as described herein, and the second linker-payload moiety comprises a TOP1 inhibitor moiety as described herein. In some embodiments, the first linker-payload moiety comprises a TOP1 inhibitor moiety as described herein, and the second linker-payload moiety comprises a DDR inhibitor moiety as described herein.
[0165] A further aspect of the present disclosure provides a DDR inhibitor moiety linked to click group, wherein the click group is suitable for conjugation to a corresponding click group in a linker moiety, and wherein the linker moiety is conjugated, or is suitable for conjugation, to an antigen-binding moiety.
[0166] A further aspect of the present disclosure provides a TOP1 inhibitor moiety linked to click group, wherein the click group is suitable for conjugation to a corresponding click group in a linker moiety, and wherein the linker moiety is conjugated, or is suitable for conjugation, to an antigen-binding moiety.
[0167] In accordance with such aspects, in some embodiments, the click group is selected from:
[0168] (i) an azide group;
[0169] (ii) an alkyne;
[0170] (iii) a tetrazine or tetrazine derivative group;
[0171] (iv) a cyclooctyne, cyclooctyne derivative, or cyclooctyne analogue group; and
[0172] (v) a strained alkene.
[0173] The tri-functional linking groups of the present disclosure are of a modular design which allows the number of payloads attached to the linker and thus the antigen-binding moieties to be readily varied, which has been shown to be important in the development of clinically relevant antibody drug conjugates. Furthermore, the use of click groups to attach payload containing moieties to the branching group allows for a wide range of payload types to be conjugated. Where orthogonal click moieties are used, two different payload moieties can be connected, including those with different, and possibly complimentary, modes of action.
[0174] The tri-functional linking groups of the present disclosure have a hydrophilic branching group which may lead to a reduction in toxicities and an improvement in biophysical, stability and pharmacokinetic properties. The present disclosure provides a tri-functional linker moiety comprising:
[0175] (a) an amino group for conjugation to an antigen-binding moiety;
[0176] (b) at least one first click group for connecting a first payload comprising moiety;
[0177] (c) at least one second click group for connection of a second payload comprising moiety;
[0178] (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0179] In some embodiments, RNis H.
[0180] In some embodiments, RNis -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-.
[0181] In some embodiments, RNis -(C1-5 alkylene)-C(O)OH.
[0182] In some embodiments, RNis -CH2CH2OCH2CH2C(O)OH.
[0183] In some embodiments, RNis CH2C(O)OH.
[0184] The amino group may be linked to the branching group by a first spacer group. The first spacer group
[0185] (A1) may comprise:
[0186] (i) a C1-7 alkylene group; and / or
[0187] (ii) a PEG 1 to 12 group.
[0188] A1 may be of the formula:
[0189] -(CH2)xa-(C2H4O)xb-(CH2)xc-, where xa is 0 or 1 , xb is 0-12, and xc is 0 to 6, wherein at least one of xa and xb is 1 .
[0190] In some embodiments, xb is 0, and xa+xc are from 1 to 7, such as 5 (i.e. A1 is -(CH2)5-).
[0191] In other embodiments, xb is from 1 to 12, xa is 0 and xc is 0 or 1 .
[0192] In other embodiments, xb is from 1 to 12. In some of these embodiments, xb is from 1 to 6. In some of these embodiments, xb is from 1 to 3, i.e. 1 , 2 or 3.
[0193] In some embodiments where xb is 1 to 12, xc is 1 to 6, or 1 to 2. In some of these embodiments, xc is 1 . In some of these embodiments, xc is 2.
[0194] In some embodiments, xa is 0, xb is 1 to 6 and xc is 2. In some of these embodiments, A1 is -(C2H4)-O-(C2H4)-. In some of these embodiments, A1 is -(C2H4<D)3-(C2H4)-.
[0195] The first and second click groups may be selected from either member of the following click-group pairs:
[0196] Cyclooctyne, cyclooctyne derivatives and cyclooctyne analogues for use in the present disclosure include:
[0197]
[0198] These groups can alternatively be called cyclic alkynes.
[0199]
[0200]
[0201] Strained alkenes for use in the present disclosure may have the structure:
[0202] In some embodiments, the click group may be a dibenzoazacyclooctyne (DIBAC) group or a 1-ethylhept-
[0203] In some embodiments of the tri-functional linking group, the first and second click groups are the same.
[0204] In other embodiments of the tri-functional linking group, the first and second click groups are selected from orthogonal click-group pairs.
[0205] In some embodiments of the tri-functional linking group, the first and / or second click group is azide.
[0206] In some embodiments of the tri-functional linking group, the first and / or second click group is tetrazine or a tetrazine derivative.
[0207] In some embodiments of the tri-functional linking group, the first and / or second click group is an alkyne (- CCH).
[0208] In some embodiments of the tri-functional linking group, the first and / or second click group is cyclooctyne or a cyclooctyne derivative.
[0209] In some embodiments of the tri-functional linking group, the first and / or second click group is norbonene or a norbonene derivative.
[0210] In some embodiments of the tri-functional linking group, the first and / or second click group is methylcyclopropene (1-MCP).
[0211] In some embodiments of the tri-functional linking group, the first click group is azide and the second click group is tetrazine or a tetrazine derivative.
[0212] In some embodiments of the tri-functional linking group, the first click group is azide and the second click group is cyclooctene.
[0213] In some embodiments of the tri-functional linking group, the first click group is azide and the second click group is norbonene or a norbonene derivative.
[0214] In some embodiments of the tri-functional linking group, the first click group is azide and the second click group is methylcyclopropene (1-MCP). In some embodiments of the tri-functional linking group, the first click group is alkyne (-CCH) and the second click group is tetrazine or a tetrazine derivative.
[0215] In some embodiments of the tri-functional linking group, the first click group is alkyne (-CCH) and the second click group is cyclooctene.
[0216] In some embodiments of the tri-functional linking group, the first click group is alkyne (-CCH) and the second click group is norbonene or a norbonene derivative.
[0217] In some embodiments of the tri-functional linking group, the first click group is alkyne (-CCH) and the second click group is methylcyclopropene (1-MCP).
[0218] In some embodiments of the tri-functional linking group, the first click group is cyclooctyne or a cyclooctyne derivative and the second click group is tetrazine or a tetrazine derivative.
[0219] In some embodiments of the tri-functional linking group, the first click group is cyclooctyne or a cyclooctyne derivative and the second click group is cyclooctene.
[0220] In some embodiments of the tri-functional linking group, the first click group is cyclooctyne or a cyclooctyne derivative and the second click group is norbonene or a norbonene derivative.
[0221] In some embodiments of the tri-functional linking group, the first click group is cyclooctyne or a cyclooctyne derivative and the second click group is methylcyclopropene (1-MCP).
[0222] In some embodiments of the tri-functional linking group, the second click group is phenyl-tetrazine.
[0223] In some embodiments of the tri-functional linking group, the second click group is selected from the following groups: In some embodiments of the tri-functional linking group, the second click group is:
[0224] The at least one first click group may be linked to the branching group by a second spacer group (B1). In some embodiments, the second spacer group is branched, such that two first click groups are linked to the branching group. In other embodiments, the second spacer group is not branched, such that a single first click group is linked to the branching group.
[0225] The at least one second click group may be linked to the branching group by a third spacer group (B2). In some embodiments, the third spacer group is branched, such that two second click groups are linked to the branching group. In other embodiments, the third spacer group is not branched, such that a single second click group is linked to the branching group.
[0226] In some embodiments of the tri-functional linking group, the second spacer group (B1) is of formula (B1-1):
[0227] In some embodiments, xl3 is 0-2. In some embodiments, xl3 is 0. In some embodiments, xl3 is 1 . In some embodiments, xl3 is 2.
[0228] In some embodiments, xl4 is 0. In some embodiments, xl4 is 1 . In some embodiments, xe1 is 2-4. In some embodiments, xe1 is 2. In some embodiments, xe1 is 3. In some embodiments, xe1 is 4.
[0229] In some embodiments, xe2 is 2-4. In some embodiments, xe2 is 2. In some embodiments, xe2 is 3. In some embodiments, xe2 is 4.
[0230] In some of these embodiments of the tri-functional linking group, the second spacer group (B1) is of formula (B1-2): (B1-2) where xd is 0-3,
[0231] RNB1is -(C2H4O)xe1-(CH2)xf1-(NH)xS1-(C(=O)CH2)xh1- where xe1 is 0 or 1 , xf1 is 0 to 2, xg1 is 0 or 1 , and xh1 is 0 or 1 ,
[0232] RNB2iS H Or -(C2H4O)xe2-(CH2)xf2-(NH)xS2-(C(=O)CH2)xh2- where xe2 is 0 or 1 , xf2 is 0 to 2, xg2 is 0 or 1 , and xh2 is 0 or 1 .
[0233] In some embodiments, RNB2is H. In some embodiments, RNB2is -(C2H4O)xe2-(CH2)xf2-(NH)xg2- (C(=O)CH2)xh2-. In other embodiments, RNB2is the same as RNB1.
[0234] In some embodiments, xd is 0-2. In some embodiments, xd is 0-1 . In some embodiments, xd is 0. In some embodiments, xd is 1 . In some embodiments, xd is 2. In some embodiments, xd is 3. In some embodiments, xd is 0 or 2.
[0235] In some embodiments, xe1 is 0. In some embodiments, xe1 is 1.
[0236] In some embodiments, xf1 is 0-1. In some embodiments, xf1 is 0. In some embodiments, xf1 is 1. In some embodiments, xf1 is 2. In some embodiments, xf1 is 0 or 2.
[0237] In some embodiments, xg1 is 0. In some embodiments, xg1 is 1.
[0238] In some embodiments, xh1 is 0. In some embodiments, xh1 is 1.
[0239] In some embodiments, xe2 is 0. In some embodiments, xe2 is 1 .
[0240] In some embodiments, xf2 is 0-1 . In some embodiments, xf2 is 0. In some embodiments, xf2 is 1 . In some embodiments, xf2 is 2. In some embodiments, xf2 is 0 or 2.
[0241] In some embodiments, xg2 is 0. In some embodiments, xg2 is 1 . In some embodiments, xe1 is 1 , xf1 is 2, xg1 is 0, and xh1 is 0.
[0242] In some embodiments, xe1 is 0, xf1 is 0, xg1 is 0, and xh1 is 1 .
[0243] In some embodiments, xe1 is 1 , xf1 is 2, xg1 is 1 , and xh1 is 1 . In some embodiments, xe2 is 1 , xf2 is 2, xg2 is 0, and xh2 is 0.
[0244] In some embodiments, xe2 is 0, xf2 is 0, xg2 is 0, and xh2 is 1 .
[0245] In some embodiments, xe2 is 1 , xf2 is 2, xg2 is 1 , and xh2 is 1 .
[0246] In some embodiments of the tri-functional linking group, the second spacer group (B1) is selected from the groups containing: In some embodiments of the tri-functional linking group, the second spacer group (B1) is selected from the groups containing:
[0247] In some embodiments of the tri-functional linking group, the second spacer group (B2) is of formula (B2-1):
[0248] RL2is -(C2H4O)xi5-(CH2)xi-(C(=O))xi6- where xl6 is 0 to 4, xi is 0 to 3, xl6 is 0 or 1 ,
[0249] RNB3is -(C2H4O)xji-(CH2)xki-(NH)xii-(C(=O)CH2)xmi- where xj 1 is 0 to 4, xk1 is 0 to 2, xl1 is 0 or 1 , and xml is 0 or 1 , RNB4is H or -(C2H4O)xj2-(CH2)xk2-(NH)xi2-(C(=O)CH2)xm2- where xj2 is 0 to 4, xk2 is 0 to 2, xl2 is 0 or 1 , and xm2 is 0 or 1 .
[0250] In some embodiments, xl5 is 0-2. In some embodiments, xl5 is 0. In some embodiments, xl5 is 1 . In some embodiments, xl5 is 2.
[0251] In some embodiments, xl6 is 0. In some embodiments, xl6 is 1 .
[0252] In some embodiments, xj1 is 2-4. In some embodiments, xj1 is 2. In some embodiments, xj1 is 3. In some embodiments, xj 1 is 4.
[0253] In some embodiments, xj2 is 2-4. In some embodiments, xj2 is 2. In some embodiments, xj2 is 3. In some embodiments, xj2 is 4.
[0254] In some embodiments of the tri-functional linking group, the third spacer group (B2) is of formula (B2-2):
[0255] RNB3is -(C2H4O)xji-(CH2)xki-(NH)xii-(C(=O)CH2)xmi- where xj 1 is 0 or 1 , xk1 is 0 to 2, xl1 is 0 or 1 , and xml is 0 or 1 ,
[0256] RNB4is H or -(C2H4O)xj2-(CH2)xk2-(NH)xi2-(C(=O)CH2)xm2- where xj2 is 0 or 1 , xk2 is 0 to 2, xl2 is 0 or 1 , and xm2 is 0 or 1 .
[0257] In some embodiments, RNB4is H. In some embodiments, RNB4is -(C2H4O)xj2-(CH2)xk2-(NH)xi2- (C(=O)CH2)xm2-. In other embodiments, RNB4is the same as RNB3.
[0258] In some embodiments, xi is 0-2. In some embodiments, xi is 0-1 . In some embodiments, xi is 0. In some embodiments, xi is 1 . In some embodiments, xi is 2. In some embodiments, xi is 3. In some embodiments, xi is 0 or 2.
[0259] In some embodiments, xj1 is 0. In some embodiments, xj1 is 1.
[0260] In some embodiments, xk1 is 0-1. In some embodiments, xk1 is 0. In some embodiments, xk1 is 1. In some embodiments, xk1 is 2. In some embodiments, xk1 is 0 or 2.
[0261] In some embodiments, xl1 is 0. In some embodiments, xl1 is 1.
[0262] In some embodiments, xml is 0. In some embodiments, xml is 1. In some embodiments, xj2 is 0. In some embodiments, xj2 is 1 .
[0263] In some embodiments, xk2 is 0-1 . In some embodiments, xk2 is 0. In some embodiments, xk2 is 1 . In some embodiments, xk2 is 2. In some embodiments, xk2 is 0 or 2.
[0264] In some embodiments, xl2 is 0. In some embodiments, xl2 is 1 .
[0265] In some embodiments, xj1 is 1 , xk1 is 2, x 11 is 0, and xml is 0. In some embodiments, xj 1 is 0, xk1 is 0, x 11 is 0, and xml is 1 . In some embodiments, xj1 is 1 , xk1 is 2, x 11 is 1 , and xml is 1 .
[0266] In some embodiments, xj2 is 1 , xk2 is 2, x I2 is 0, and xm2 is 0. In some embodiments, xj2 is 0, xk2 is 0, x I2 is 0, and xm2 is 1 . In some embodiments, xj2 is 1 , xk2 is 2, x I2 is 1 , and xm2 is 1 .
[0267] In some embodiments of the tri-functional linking group, the third spacer group (B2) is selected from the
[0268] In some embodiments of the tri-functional linking group, the third spacer group (B2) is selected from the groups containing: In some embodiments of the tn-functional linking group, the second spacer group (B1) is the same as the third spacer group (B2). In some embodiments of the tri-functional linking group, the second spacer group (B1) is different to the third spacer group (B2).
[0269] In some embodiments of the tri-functional linking group, the second spacer group (B1) and the third spacer group (B2), together with the nitrogen atom to which they are attached form one of the flowing groups:
[0270] In some embodiments of the tri-functional linking group, the second spacer group (B1) and the third spacer group (B2), together with the nitrogen atom to which they are attached form one of the flowing
[0271]
[0272] The present disclosure provides a linker comprising:
[0273] (a) an amino group conjugated to an antigen-binding moiety;
[0274] (b) at least one first payload comprising moiety clicked to a first click group; (c) at least one second payload comprising moiety clicked to a second click group;
[0275] (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0276] Examples of the clicked group are shown below:
[0277]
[0278] As shown in the table above, the reaction between the first and second members of the click group pairs can result in two isomeric products, i.e. a mixture. The present disclosure includes both isomeric forms when only one is shown.
[0279] The amino group may be linked to the branching group by a first spacer group (A1) as defined above.
[0280] The at least one first click group may be linked to the branching group by a second spacer group (B1) as defined above.
[0281] The at least one second click group may be linked to the branching group by a third spacer group (B2) as defined above.
[0282] In some embodiments, the linker comprises one of the following groups:
[0283]
[0284]
[0285]
[0286] The link between the payload moiety (e.g. the DDR inhibitor moiety or the TOP1 inhibitor moiety) and the click group according to the present disclosure may be a cleavable linker moiety or a non-cleavable moiety, e.g. as described hereinabove.
[0287] In some embodiments, there is a functional group to connect the click group. This functional group may be selected from carbonyl (C=O) and oxy (O). Where the click group is DBCO or TMTHSI, the functional group may be carbonyl. Where the click group is TCO, the functional group may be oxy.
[0288] In some embodiments, the linker the link between the payload moiety and the click moiety comprises:
[0289] , where Qxis such that Q is an amino-acid residue, a dipeptide residue or a tripeptide residue;
[0290] X is: where a = 0 to 5, b = 0 to 8, c = 0 or 1 , d = 0 to 5; a may be 0, 1 , 2, 3, 4 or 5. In some embodiments, a is 0 to 3. In some of these embodiments, a is 0 or 1 . In further embodiments, a is 1 . b may be 0, 1 , 2, 3, 4, 5, 6, 7 or 8. In some embodiments, b is 0 to 6. In some of these embodiments, b is 0 to 4, and may be 0, 1 , 2, 3 or 4. In further embodiments, b is 3. c may be 0 or 1 . In some of these embodiments, c is 1 . d may be 0, 1 , 2, 3, 4 or 5. In some embodiments, d is 0 to 3. In some of these embodiments, d is 0, 1 or 2. In further embodiments, d is 2. In other further embodiments, d is 1 . In other further embodiments, d is 0.
[0291] In some embodiments of X, a is 0, c is 1 and d is 2, and b may be from 0 to 8. In some of these embodiments, b is 0, 4 or 8.
[0292] In one embodiment, Q is an amino acid residue. The amino acid may a natural amino acids or a nonnatural amino acid.
[0293] In one embodiment, Q is selected from: Phe, Lys, Vai, Ala, Cit, Leu, lie, Arg, Ser, and Trp, where Cit is citrulline. In one, Q is a serine derivative (see WO2018 / 234636A1).
[0294] In one embodiment, Q comprises a dipeptide residue. The amino acids in the dipeptide may be any combination of natural amino acids and non-natural amino acids. In some embodiments, the dipeptide comprises natural amino acids. Where the linker is a cathepsin labile linker, the dipeptide is the site of action for cathepsin-mediated cleavage. The dipeptide then is a recognition site for cathepsin.
[0295] In one embodiment, Q is selected from:
[0296] C0-Phe-Lys-NH,
[0297] C0-Val-Ala-NH,
[0298] C0-Val-Lys-NH,
[0299] C0-Ala-Lys-NH,
[0300] C0-Val-Cit-NH,
[0301] C0-Phe-Cit-NH,
[0302] C0-Leu-Cit-NH,co-lle-Cit-NH,
[0303] C0-Phe-Arg-NHC0-Gly-Cit-NH,
[0304] C0-Gly-Ala-NH, and
[0305] C0-Trp-Cit-NH; where Cit is citrulline.
[0306] In some of these embodiments, Q is selected from:
[0307] C0-Phe-Lys-NH,
[0308] C0-Val-Ala-NH,
[0309] C0-Val-Lys-NH,
[0310] C0-Ala-Lys-NH, co-Val-Cit-NH.
[0311] In further embodiments, Q is selected fromC0-Phe-Lys-NH,co-Val-Cit-NHandC0-Val-Ala-NH.
[0312] In some embodiments, the link between the payload moiety (e.g. the DDR inhibitor moiety or the TOP1 inhibitor moiety) and the click group comprises: PABC, a cathepsin-cleavable dipeptide, and a PEG2 to PEG4 (e.g. a PEG3) group. In some of these embodiments, the link between the payload moiety and the click group comprises, or is:
[0313] In some embodiments, the link between the payload moiety comprises GGFG (Glycine-Glycine- Phenylalanine-Glycine). This may be directly linked to the payload or linked via a CH2 group. In some of these embodiments, the link between the payload moiety and the click group comprises, or is:
[0314] In some embodiments, the TOP1 inhibitor moiety linked to click group has the structure:
[0315] LP-1
[0316] In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0317] LP-2
[0318] In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0319] LP-3
[0320] In some embodiments, the DDR inhibitor moiety linked to click group has the structure: In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0321] In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0322] In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0323] In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0324] In some embodiments, the DDR inhibitor moiety linked to click group has the structure: In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0325]
[0326] In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0327] 5 In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0328] In some embodiments, the DDR inhibitor moiety linked to click group has the structure:
[0329] LP-13
[0330] In some embodiments, the antigen-binding molecule of the present disclosure does not comprise, or consist of, the structure of ‘Trastuzumab-Veliparib(4)-25-6(4)’ as described in WO 2023 / 249473 A1 , e.g. as described in Example 7 of WO 2023 / 249473 A1 .
[0331] Antigen-binding molecules and antigen-binding moieties
[0332] An ‘antigen-binding molecule’ refers to a molecule that binds to a given target antigen. Antigen-binding molecules comprise one or more antigen-binding moieties through which the antigen-binding molecule binds to its target antigen(s). For example, aspects and embodiments of the present disclosure relate to antigen-binding molecules comprising a target antigen-binding moiety.
[0333] Antigen-binding moieties may comprise, or may be derived from, antibodies ( / .e. immunoglobulins (Igs)) and antigen-binding fragments of antibodies. As used herein, ‘antibodies’ include monoclonal antibodies, polyclonal antibodies, monospecific and multispecific (e.g., bispecific, trispecific, etc.) antibodies, and antibody-derived antigen-binding molecules such as scFv, scFab, diabodies, triabodies, scFv-Fc, minibodies, single domain antibodies (e.g. VhH, etc.). Antigen-binding fragments of antibodies include e.g. Fv, Fab, F(ab’)2 and F(ab’) fragments.
[0334] Antigen-binding moieties also include target antigen-binding aptamers, e.g. a nucleic acid aptamers (reviewed, for example, in Zhou and Rossi, Nat Rev Drug Discov. (2017) 16(3):181-202). In some embodiments, an antigen-binding moiety comprises or consists of an antigen-binding peptide / polypeptide, e.g. a peptide aptamer, thioredoxin, monobody, anticalin, Kunitz domain, avimer, knottin, fynomer, atrimer, DARPin, affibody, nanobody ( / .e. a single-domain antibody (sdAb)), affilin, armadillo repeat protein (ArmRP), OBody or fibronectin - reviewed e.g. in Reverdatto et al., Curr Top Med Chem. 2015; 15(12): 1082-1101 , which is hereby incorporated by reference in its entirety (see also e.g. Boersma et al., J Biol Chem (2011) 286:41273-85 and Emanuel et al., Mabs (2011) 3:38-48).
[0335] The skilled person is readily able to produce antigen-binding molecules that bind to a given target antigen, in view of techniques that are well-known in the art. For example, Park and Smolen, Advances in Protein Chemistry (2001) 56: 369-421 describes approaches to the production of monoclonal antibodies suitable for use in humans, including raising xenogeneic antibodies and their subsequent humanisation, identification by human antibody gene-phage display, and production of antibodies in transgenic mice harbouring human antibody genes. Briefly, in the human antibody gene-phage display technique, genes encoding the VH and VL chains are generated by PCR amplification and cloning from ‘naive’ human lymphocytes, and assembled into a library from which they can be expressed either as disu Ifide-linked Fab fragments or as single-chain Fv (scFv) fragments. The Fab- or scFv-encoding genes are fused to a surface coat protein of filamentous bacteriophage and Fab or scFv capable of binding to the target of interest can then be identified by screening the library with antigen. Molecular evolution or affinity maturation procedures can be employed to enhance the affinity of the Fab / scFv fragment. In the transgenic mouse technique, mice in which the endogenous murine Ig gene loci have been replaced by homologous recombination with their human homologues are immunised with antigen, and monoclonal antibody is prepared by conventional hybridoma technology, to yield a fully-human monoclonal antibody.
[0336] In some embodiments, an antigen-binding moiety according to the present disclosure comprises, or consists of, the antigen-binding region of an antibody (e.g. an antigen-binding fragment of an antibody). Antigen-binding moieties may be derived from antibodies. Antibody-derived antigen-binding moieties may comprise, or consist of, the antigen-binding region of an antibody (e.g. an antigen-binding fragment of an antibody). In some embodiments, an antigen-binding moiety may be or comprise the Fv (e.g. provided as an scFv) or the Fab region of an antibody that binds to a given target antigen, or the whole antibody.
[0337] The antigen-binding moieties of the present disclosure may be designed and prepared using the sequences of monoclonal antibodies (mAbs) capable of binding to a given target antigen. Antigen-binding regions of antibodies, such as variable fragment (Fv), Fab and F(ab’)2 fragments may also be used / provided. An ‘antigen-binding region’ is any fragment of an antibody that binds to the target antigen for which the given antibody is specific.
[0338] Aspects and embodiments of the present disclosure relate to antigen-binding molecules that bind ( / .e. through an antigen-binding moiety) to a given target.
[0339] The target antigen for a target antigen-binding moiety according to the present disclosure may be any molecule. In some embodiments, a target antigen may be a peptide / polypeptide, glycoprotein, lipoprotein, glycan, glycolipid, lipid, or fragment thereof. A target antigen may be expressed at the cell surface of a cell expressing the target antigen.
[0340] In some embodiments, a target antigen is a disease-associated antigen. A ‘disease-associated antigen’ refers to an antigen whose presence is indicative of a given disease / disease state, or an antigen for which an elevated level of the antigen is positively-correlated with a given disease / disease state. The disease-associated antigen may be an antigen whose expression is associated with the development, progression or severity of symptoms of a given disease. The disease-associated antigen may be associated with the cause or pathology of the disease, or may be expressed abnormally as a consequence of the disease. A disease-associated antigen may be an antigen of an infectious agent or pathogen, a cancer-associated antigen, an autoimmune disease-associated antigen, a neurological disease-associated antigen, a cardiovascular disease-associated antigen, a metabolic disease- associated antigen, a hematologic disease-associated antigen or a fibrotic disease-associated antigen.
[0341] In some embodiments, the disease-associated antigen is an antigen of a pathogen. The pathogen may be prokaryotic (bacteria), eukaryotic (e.g. protozoan, helminth, fungus), virus or prion. In some embodiments, the pathogen is an intracellular pathogen. In some embodiments the pathogen is a virus, e.g. a virus as described hereinabove. In some embodiments the pathogen is a bacterium.
[0342] In some embodiments, the target antigen is a cancer-associated antigen. A cancer-associated antigen is an antigen whose expression or overexpression is associated with cancer. In some embodiments, the cancer-associated antigen is a receptor molecule, e.g. a cell surface receptor. In some embodiments, the cancer-associated antigen is a cell signalling molecule, e.g. a cytokine, chemokine, interferon, interleukin or lymphokine. In some embodiments, the cancer-associated antigen is a growth factor or a hormone. In some embodiments, the cancer-associated antigen is a viral antigen. A cancer cell antigen may be abnormally expressed by a cancer cell (e.g. the cancer cell antigen may be expressed with abnormal localisation), or may be expressed with an abnormal structure by a cancer cell. A cancer cell antigen may be capable of eliciting an immune response. In some embodiments, the antigen is expressed at the cell surface of the cancer cell ( / .e. the cancer cell antigen is a cancer cell surface antigen). In some embodiments, the part of the antigen which is bound by an antigen-binding molecule described herein is displayed on the external surface of the cancer cell ( / .e. is extracellular). The cancer cell antigen may be a cancer-associated antigen. In some embodiments the cancer cell antigen is an antigen whose expression is associated with the development, progression or severity of symptoms of a cancer. The cancer- associated antigen may be associated with the cause or pathology of the cancer, or may be expressed abnormally as a consequence of the cancer. In some embodiments, the cancer cell antigen is an antigen whose expression is upregulated (e.g. at the RNA and / or protein level) by cells of a cancer, e.g. as compared to the level of expression by comparable non-cancerous cells (e.g. non-cancerous cells derived from the same tissue / cell type). In some embodiments, the cancer-associated antigen may be preferentially expressed by cancerous cells, and not expressed by comparable non-cancerous cells (e.g. non-cancerous cells derived from the same tissue / cell type). In some embodiments, the cancer- associated antigen may be the product of a mutated oncogene or mutated tumor suppressor gene. In some embodiments, the cancer-associated antigen may be the product of an overexpressed cellular protein, a cancer antigen produced by an oncogenic virus, an oncofetal antigen, or a cell surface glycolipid or glycoprotein.
[0343] Cancer-associated antigens are reviewed by Zarour HM, DeLeo A, Finn OJ, et al. Categories of Tumor Antigens. In: Kufe DW, Pollock RE, Weichselbaum RR, et al., editors. Holland-Frei Cancer Medicine. 6thedition. Hamilton (ON): BC Decker; 2003. Cancer-associated antigens include oncofetal antigens: CEA, Immature laminin receptor, TAG-72; oncoviral antigens such as HPV E6 and E7; overexpressed proteins: fibroblast activation protein (FAP), B-cell maturation antigen (BCMA), CD19, HER2 / neu, BING-4, calcium- activated chloride channel 2, cyclin-B1 , 9D7, Ep-CAM, EphA3, telomerase, mesothelin, SAP-1 , survivin; cancer-testis antigens: BAGE, CAGE, GAGE, MAGE, SAGE, XAGE, CT9, CT10, NY-ESO-1 , PRAME, SSX-2; lineage restricted antigens: MARTI , Gp100, tyrosinase, TRP-1 / 2, MC1 R, prostate specific antigen; mutated antigens: p-catenin, BRCA1 / 2, CDK4, CML66, Fibronectin, MART-2, p53, Ras, TGF- pRI I ; post-translationally altered antigens: MUC1 , idiotypic antigens: Ig, TCR. Other cancer cell antigens include heat-shock protein 70 (HSP70), heat-shock protein 90 (HSP90), glucose-regulated protein 78 (GRP78), vimentin, nucleolin, feto-acinar pancreatic protein (FAPP), alkaline phosphatase placental-like 2 (ALPPL-2), siglec-5, stress-induced phosphoprotein 1 (STIP1), protein tyrosine kinase 7 (PTK7), and cyclophilin B. In some embodiments the cancer cell antigen is a cancer cell antigen described in Zhao and Cao, Front Immunol. (2019) 10:2250, which is hereby incorporated by reference in its entirety.
[0344] In some embodiments, the target antigen is an immune cell surface molecule. An immune cell surface molecule is any molecule which is expressed in or at the cell membrane of an immune cell. In some embodiments, the part of the immune cell surface molecule which is bound by the antigen-binding moiety is on the external surface of the immune cell ( / .e. is extracellular). The immune cell surface molecule may be expressed at the cell surface of any immune cell. In some embodiments, the immune cell may be a cell of hematopoietic origin, e.g. a neutrophil, eosinophil, basophil, dendritic cell, lymphocyte, or monocyte. The lymphocyte may be e.g. a T cell, B cell, natural killer (NK) cell, NKT cell or innate lymphoid cell (ILC), or a precursor thereof (e.g. a thymocyte or pre-B cell). The immune cell may express a CD3 polypeptide (e.g. CD3y CD3e CD3 or CD35), a TCR polypeptide (TCRa or TCRp), CD27, CD28, CD4 or CD8. In some embodiments, the immune cell is a T cell, e.g. a CD3+ T cell. In some embodiments, the T cell is a CD3+, CD4+ T cell. In some embodiments, the T cell is a CD3+, CD8+ T cell. In some embodiments, the T cell is a T helper cell (TH cell). In some embodiments, the T cell is a cytotoxic T cell (e.g. a cytotoxic T lymphocyte (CTL)). In some embodiments, the immune cell is a T cell or an NK cell.
[0345] In some embodiments, an immune cell surface molecule may be a CD3-TCR complex polypeptide, e.g. TCRa, TCRp, TCRy, TCR5, TRAC, TRBC1 , TRBC2, TRGC1 , TRGC2, TRDC, CD3e, CD35, CD3y, CD3 or CD3r|. In some embodiments, an immune cell surface molecule is CD3, CD8, CD4 or CD28. In some embodiments, an immune cell surface molecule is a checkpoint molecule (e.g. PD-1 , CTLA-4, LAG-3, TIM-3, VISTA, TIGIT or BTLA), or a ligand for a checkpoint molecule (e.g. PD-L1 , PD-L2, CD80, CD86, MHC class I, MHC Class II, Galectin 9, VSIG3, VSIG8, LRIG1 , PSGL1 , CD155 or HVEM). In some embodiments the immune cell surface molecule is a costimulatory molecule (e.g. CD28, 0X40, 4-1 BB, ICOS or CD27), or a ligand for a costimulatory molecule (e.g. CD86, CD80, OX40L 4-1 BBL, ICOSL or CD70).
[0346] In some embodiments, an antigen-binding moiety comprises the antibody heavy chain variable region (VH) and the antibody light chain variable region (VL) of an antibody capable of specific binding to the target antigen. In some embodiments, the antigen-binding moiety is or comprises the Fv (e.g. provided as an scFv) of an antibody. In some embodiments, the antigen-binding moiety is or comprises the Fab region of an antibody. In some embodiments, the antigen-binding moiety is or comprises the whole antibody ( / .e. comprising variable and constant regions).
[0347] An antigen-binding moiety may be, or may comprise, an antigen-binding polypeptide, or an antigenbinding polypeptide complex. An antigen-binding moiety may comprise more than one polypeptide which together form an antigen-binding moiety. The polypeptides may associate covalently or non-covalently. In some embodiments, the polypeptides form part of a larger polypeptide comprising the polypeptides (e.g. in the case of scFv comprising VH and VL, or in the case of scFab comprising VH-CH1 and VL-CL).
[0348] In some embodiments, an antigen-binding moiety according to the present disclosure comprises, or consists of, a polypeptide complex formed by proteimprotein interaction between constituent peptides / polypeptides of the antigen-binding moiety. An antigen-binding moiety may refer to a non- covalent or covalent complex of more than one polypeptide (e.g. 2, 3, 4, 6, or 8 polypeptides), e.g. an IgG-like antigen-binding moiety comprising two heavy chain polypeptides and two light chain polypeptides.
[0349] Antibodies generally comprise six complementarity-determining regions CDRs; three in the heavy chain variable (VH) region: HC-CDR1 , HC-CDR2 and HC-CDR3, and three in the light chain variable (VL) region: LC-CDR1 , LC-CDR2, and LC-CDR3. The six CDRs together define the paratope of the antibody, which is the part of the antibody that binds to the target antigen.
[0350] The VH region and VL region comprise framework regions (FRs) either side of each CDR, which provide a scaffold for the CDRs. From N-terminus to C-terminus, VH regions comprise the following structure: N term-[HC-FR1]-[HC-CDR1]-[HC-FR2]-[HC-CDR2]-[HC-FR3]-[HC-CDR3]-[HC-FR4]-C term; and VL regions comprise the following structure: N term-[LC-FR1]-[LC-CDR1]-[LC-FR2]-[LC-CDR2]-[LC-FR3]- [LC-CDR3]-[LC-FR4]-C term.
[0351] There are several different conventions for defining antibody CDRs and FRs, such as those described in Kabat et al., Sequences of Proteins of Immunological Interest, 5thEd. Public Health Service, National Institutes of Health, Bethesda, MD (1991), Chothia et a!., J. Mol. Biol. 196:901-917 (1987), and VBASE2, as described in Retter et al., Nucl. Acids Res. (2005) 33 (suppl 1): D671-D674. The CDRs and FRs of the VH regions and VL regions of the antibody clones described herein were defined according to the international IMGT (ImMunoGeneTics) information system (LeFranc et al., Nucleic Acids Res. (2015) 43 (Database issue):D413-22), which uses the IMGT V-DOMAIN numbering rules as described in Lefranc et al., Dev. Comp. Immunol. (2003) 27:55-77. In preferred embodiments, the CDRs and FRs of antigenbinding moieties referred to herein are defined according to the IMGT information system.
[0352] In some embodiments, an antigen-binding moiety according to the present disclosure comprises, or consists of, an Fv region that binds to the relevant target antigen. In some embodiments, the VH and VL regions of the Fv are provided as single polypeptide joined by a linker sequence, i.e. a single chain Fv (scFv). The VL and light chain constant (CL) region, and the VH region and heavy chain constant 1 (CH1) region of an antigen-binding region of an antibody together constitute the Fab region. In some embodiments, the antigen-binding moiety comprises a Fab region comprising a VH, a CH1 , a VL and a CL (e.g. CK or CA). In some embodiments, the Fab region comprises a polypeptide comprising a VH and a CH1 (e.g. a VH- CH1 fusion polypeptide), and a polypeptide comprising a VL and a CL (e.g. a VL-CL fusion polypeptide). In some embodiments, the Fab region comprises a polypeptide comprising a VH and a CL (e.g. a VH-CL fusion polypeptide) and a polypeptide comprising a VL and a CH1 (e.g. a VL-CH1 fusion polypeptide); that is, in some embodiments, the Fab region is a CrossFab region. In some embodiments, the VH, CH1 , VL and CL regions of the Fab or CrossFab are provided as single polypeptide joined by linker regions, i.e. as a single chain Fab (scFab) or a single chain CrossFab (scCrossFab).
[0353] In some embodiments, an antigen-binding moiety described herein comprises, or consists of, a whole antibody which binds to the relevant target antigen. As used herein, ‘whole antibody’ refers to an antibody having a structure which is substantially similar to the structure of an immunoglobulin (Ig). Different kinds of immunoglobulins and their structures are described e.g. in Schroeder and Cavacini J Allergy Clin Immunol. (2010) 125(202): S41-S52, which is hereby incorporated by reference in its entirety.
[0354] Immunoglobulins of type G (i.e. IgG) are -150 kDa glycoproteins comprising two heavy chains and two light chains. From N- to C-terminus, the heavy chains comprise a VH followed by a heavy chain constant region comprising three constant domains (CH1 , CH2, and CH3), and similarly the light chains comprise a VL followed by a CL. Depending on the heavy chain, immunoglobulins may be classed as IgG (e.g.
[0355] IgG 1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE, or IgM. The light chain may be kappa (K) or lambda (A).
[0356] In some embodiments, the antigen-binding moiety comprises, or consists of, an IgG (e.g. lgG1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE, or IgM which binds to the relevant target antigen.
[0357] In some embodiments, an antigen-binding moiety of the present disclosure comprises one or more regions (e.g. CH1 , hinge, CH2, CH3, etc.) of an immunoglobulin heavy chain constant sequence. In some embodiments, the immunoglobulin heavy chain constant sequence is, or is derived from, the heavy chain constant sequence of an IgG (e.g. IgG 1 , lgG2, lgG3, lgG4), IgA (e.g. Ig A1 , lgA2), IgD, IgE or IgM, e.g. a human IgG (e.g. hlgG 1 , hlgG2, hlgG3, hlgG4), hlgA (e.g. hlgA1 , hlgA2), hlgD, hlg E or hlgM. In some embodiments, the immunoglobulin heavy chain constant sequence is, or is derived from, the heavy chain constant sequence of a human lgG1 allotype (e.g. G1 m1 , G1 m2, G1 m3 or G1 m17).
[0358] In some embodiments, an antigen-binding moiety comprises one or more polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91%, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:2 or 7. In some embodiments, an antigen-binding moiety comprises one or more polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91%, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:3. In some embodiments, an antigen-binding moiety comprises one or more polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91%, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:4 or 19. In some embodiments, an antigenbinding moiety comprises one or more polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91%, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:5 or 8. In some embodiments, an antigen-binding moiety comprises one or more polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91%, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:9, 10, 20 or 21 . In some embodiments, an antigen-binding moiety comprises one or more polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91%, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:1 , 6, 17 or 18.
[0359] In some embodiments, an antigen-binding moiety of the present disclosure comprises one or more regions of an immunoglobulin light chain constant sequence. In some embodiments, the immunoglobulin light chain constant sequence is human immunoglobulin kappa constant (IGKC; CK). In some embodiments, the immunoglobulin light chain constant sequence is a human immunoglobulin lambda constant (IGLC; CA), e.g. IGLC1 , IGLC2, IGLC3, IGLC6 or IGLC7.
[0360] In some embodiments, an antigen-binding moiety comprises one or more polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91%, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:11 , 12, 13, 14, 15 or 16.
[0361] In some embodiments described herein, one or more amino acids of an amino acid sequence referred to herein (e.g. an amino acid sequence of an antigen-binding moiety, e.g. an amino acid sequence of a CDR or VH / VL region) are substituted with another amino acid. A substitution comprises substitution of an amino acid residue with a non-identical ‘replacement’ amino acid residue. A replacement amino acid residue of a substitution according to the present disclosure may be a naturally-occurring amino acid residue ( / .e. encoded by the genetic code) which is non-identical to the amino acid residue at the relevant position of the equivalent, unsubstituted amino acid sequence, selected from: alanine (Ala), arginine (Arg), asparagine (Asn), aspartic acid (Asp), cysteine (Cys), glutamine (Gin), glutamic acid (Glu), glycine (Gly), histidine (His), isoleucine (lie): leucine (Leu), lysine (Lys), methionine (Met), phenylalanine (Phe), proline (Pro), serine (Ser), threonine (Thr), tryptophan (Trp), tyrosine (Tyr), and valine (Vai). In some embodiments, a replacement amino acid may be a non-naturally occurring amino acid residue - i.e. an amino acid residue other than those recited in the preceding sentence. Examples of non-naturally occurring amino acid residues include norleucine, ornithine, norvaline, homoserine, aib, and other amino acid residue analogues such as those described in Ellman, etal., Meth. Enzym. 202 (1991) 301-336.
[0362] In some embodiments, a substitution may be biochemically conservative. In some embodiments, where an amino acid to be substituted is provided in one of rows 1 to 5 of the table below, the replacement amino acid of the substitution is another, non-identical amino acid provided in the same row:
[0363] By way of illustration, in some embodiments wherein substitution is of a Met residue, the replacement amino acid may be selected from Ala, Vai, Leu, lie, Trp, Tyr, Phe and Norleucine. In some embodiments, a replacement amino acid in a substitution may have the same side chain polarity as the amino acid residue it replaces. In some embodiments, a replacement amino acid in a substitution may have the same side chain charge (at pH 7.4) as the amino acid residue it replaces:
[0364] That is, in some embodiments, a nonpolar amino acid is substituted with another, non-identical nonpolar amino acid. In some embodiments, a polar amino acid is substituted with another, non-identical polar amino acid. In some embodiments, an acidic polar amino acid is substituted with another, non-identical acidic polar amino acid. In some embodiments, a basic polar amino acid is substituted with another, non- identical basic polar amino acid. In some embodiments, a neutral amino acid is substituted with another, non-identical neutral amino acid. In some embodiments, a positive amino acid is substituted with another, non-identical positive amino acid. In some embodiments, a negative amino acid is substituted with another, non-identical negative amino acid.
[0365] In some embodiments, substitution(s) may be functionally conservative. That is, in some embodiments, the substitution may not affect (or may not substantially affect) one or more functional properties (e.g. target binding) of the antigen-binding moiety comprising the substitution as compared to the equivalent unsubstituted molecule.
[0366] Aspects and embodiments of the present disclosure contemplate multispecific antigen-binding molecules. By ‘multispecific’ it is meant that the antigen-binding molecule binds to more than one target antigen (e.g. one of 1 , 2, 3, 4, 5, 6 or more target antigens).
[0367] In some embodiments, the antigen-binding molecule is a bispecific antigen-binding molecule. In some embodiments, the antigen-binding molecule comprises at least two, different antigen-binding moieties. In some embodiments, the antigen-binding molecule comprises at least two antigen-binding moieties, wherein each antigen-binding moiety binds to a different target antigen.
[0368] In some embodiments, the antigen-binding molecule comprises: (i) an antigen-binding polypeptide (e.g. a scFv, scFab, polypeptide aptamer or VhH) or and an antigen-binding polypeptide complex (e.g. a Fv, Fab or whole antibody) that binds to a first antigen, and (ii) an antigen-binding polypeptide (e.g. a scFv, scFab, polypeptide aptamer or VhH) or and an antigen-binding polypeptide complex (e.g. a Fv, Fab or whole antibody) that binds to an antigen other than the first antigen. In some embodiments, the antigen-binding molecule comprises: (i) an antigen-binding moiety comprising the VH and VL of an antibody that binds to a first antigen, and (ii) an antigen-binding moiety comprising the VH and VL of an antibody that binds to an antigen other than the first antigen.
[0369] Multispecific antigen-binding molecules according to the present disclosure may be provided in any suitable format, such as those formats described in Brinkmann and Kontermann, MAbs (2017) 9(2): 182- 212, which is hereby incorporated by reference in its entirety. Multispecific antigen-binding molecule formats include those shown in Figure 2 of Brinkmann and Kontermann, MAbs (2017) 9(2): 182-212: antibody conjugates, e.g. lgG2, F(ab’)2 or CovX-Body; IgG or IgG-like molecules, e.g. IgG, chimeric IgG, KA-body common HC; CH1 / CL fusion proteins, e.g. scFv2-CH1 / CL, VHH2-CH1 / CL; ‘variable domain only’ bispecific antigen-binding molecules, e.g. tandem scFv (taFV), triplebodies, diabodies (Db), dsDb, Db(kih), DART, scDB, dsFv-dsFv, tandAbs, triple heads, tandem dAbA / HH, tetravalent dAb.VHH; Non-lg fusion proteins, e.g. scFv2-albumin, scDb-albumin, taFv-albumin, taFv-toxin, miniantibody, DNL-Fab2, DNL-Fab2-scFv, DNL-Fab2-lgG-cytokine2, ImmTAC (TCR-scFv); modified Fc and CH3 fusion proteins, e.g. scFv-Fc(kih), scFv-Fc(CH3 charge pairs), scFv-Fc (EW-RVT), scFv-fc (HA-TF), scFv-Fc (SEEDbody), taFv-Fc(kih), scFv-Fc(kih)-Fv, Fab-Fc(kih)-scFv, Fab-scFv-Fc(kih), Fab-scFv-Fc(BEAT), Fab-scFv-Fc (SEEDbody), DART-Fc, scFv-CH3(kih), TriFabs; Fc fusions, e.g. Di-diabody, scDb-Fc, taFv- Fc, scFv-Fc-scFv, HCAb-VHH, Fab-scFv-Fc, scFv4-lg, scFv2-Fcab; CH3 fusions, e.g. Dia-diabody, scDb- CH3; IgE / IgM CH2 fusions, e.g. scFv-EHD2-scFv, scFvMHD2-scFv; Fab fusion proteins, e.g. Fab-scFv (bibody), Fab-scFv2 (tribody), Fab-Fv, Fab-dsFv, Fab-VHH, orthogonal Fab-Fab; non-lg fusion proteins, e.g. DNL-Fabs, DNL-Fab2-scFv, DNL-Fab2-lgG-cytokine2; asymmetric IgG or IgG-like molecules, e.g. IgG(kih), IgG(kih) common LC, ZW1 IgG common LC, Biclonics common LC, CrossMab, CrossMab(kih), scFab-lgG(kih), Fab-scFab-lgG(kih), orthogonal Fab IgG(kih), DuetMab, CH3 charge pairs + CH1 / CL charge pairs, hinge / CH3 charge pairs, SEED-body, Duobody, four-in-one-CrossMab(kih), LUZ-Y common LC; LUZ-Y scFab-IgG, FcFc*; appended and Fc-modified IgGs, e.g. lgG(kih)-Fv, IgG HA-TF-Fv, lgG(kih)scFab, scFab-Fc(kih)-scFv2, scFab-Fc(kih)-scFv, half DVD-lg, DVI-lg (four-in-one), CrossMab- Fab; modified Fc and CH3 fusion proteins, e.g. Fab-Fc(kih)-scFv, Fab-scFv-Fc(kih), Fab-scFv-Fc(BEAT), Fab-scFv-Fc-SEEDbody, TriFab; appended IgGs - HC fusions, e.g. IgG-HC, scFv, IgG-dAb, IgG-taFV, IgG-CrossFab, IgG-orthogonal Fab, IgG-(CaCp) Fab, scFv-HC-IgG, tandem Fab-IgG (orthogonal Fab), Fab-lgG(CaCp Fab), Fab-lgG(CR3), Fab-hinge-lgG(CR3); appended IgGs - LC fusions, e.g. IgG- scFv(LC), scFv(LC)-lgG, dAb-IgG; appended IgGs - HC and LC fusions, e.g. DVD-lg, TVD-lg, CODV-lg, scFv4-lgG, Zybody; Fc fusions, e.g. Fab-scFv-Fc, scFv4-lg; F(ab’)2 fusions, e.g. F(ab’)2-scFv2; CH1 / CL fusion proteins e.g. scFv2-CH1-hinge / CL; modified IgGs, e.g. DAF (two-in one-IgG), DutaMab, Mab2; and non-lg fusions, e.g. DNL-Fab4-lgG.
[0370] The skilled person is able to design and prepare multispecific antigen-binding polypeptides / polypeptide complexes comprising at least two antigen-binding moieties. Methods for producing bispecific antigenbinding polypeptides / polypeptide complexes include chemically crosslinking antigen-binding molecules or antibody fragments, e.g. with reducible disulphide or non-reducible thioether bonds, for example as described in Segal and Bast, 2001. Production of Bispecific Antigen-binding molecules. Current Protocols in Immunology. 14:l V:2.13:2.13.1 — 2.13.16, which is hereby incorporated by reference in its entirety. For example, A / -succinimidyl-3-(-2-pyridyldithio)-propionate (SPDP) can be used to chemically crosslink e.g.
[0371] Fab fragments via hinge region SH- groups, to create disulfide-linked bispecific F(ab)2 heterodimers.
[0372] Other methods for producing bispecific antigen-binding polypeptides / polypeptide complexes include fusing antibody-producing hybridomas e.g. with polyethylene glycol, to produce a quadroma cell capable of secreting bispecific antibody, for example as described in D. M. and Bast, B. J. 2001 . Production of Bispecific Antigen-binding molecules. Current Protocols in Immunology. 14:IV:2.13:2.13.1 — 2.13.16. Antigen-binding polypeptides / polypeptide complexes according to the present disclosure may also be prepared by chemical synthesis, e.g. liquid or solid phase synthesis. For example, peptides / polypeptides can be synthesised using the methods described in, for example, Chandrudu et al., Molecules (2013), 18: 4373-4388, which is hereby incorporated by reference in its entirety.
[0373] Molecular biology techniques suitable for recombinant production of antigen-binding polypeptides / polypeptide complexes are well known in the art, such as those set out in Green and Sambrook, Molecular Cloning: A Laboratory Manual (4thEdition), Cold Spring Harbor Press, 2012, and in Nat Methods. (2008); 5(2): 135-146 both of which are hereby incorporated by reference in their entirety. Methods for the recombinant production of antigen-binding polypeptides / polypeptide complexes are also described in Frenzel et al., Front Immunol. (2013); 4: 217 and Kunert and Reinhart, Appl Microbiol Biotechnol. (2016) 100: 3451-3461 , both of which are hereby incorporated by reference in their entirety. The multispecific (e.g. bispecific) antigen-binding polypeptides / polypeptide complexes according to the present disclosure may be produced recombinantly, by expression from e.g. a nucleic acid construct encoding polypeptides for the antigen-binding polypeptide / polypeptide complex, for example as described in Antibody Engineering: Methods and Protocols, Second Edition (Humana Press, 2012), at Chapter 40: Production of Bispecific Antigen-binding molecules: Diabodies and Tandem scFv (Hornig and Farber- Schwarz), or French, How to make bispecific antibodies, Methods Mol. Med. 2000; 40:333-339, the entire contents of both of which are hereby incorporated by reference.
[0374] For example, a DNA construct encoding the light and heavy chain variable domains for the two antigenbinding moieties, and including sequences encoding a suitable linker or dimerization domain between the antigen-binding fragments can be prepared by molecular cloning techniques. A recombinant bispecific antigen-binding polypeptide / polypeptide complex can thereafter be produced by expression (e.g. in vitro) of the construct in a suitable host cell (e.g. a mammalian host cell), and expressed recombinant bispecific polypeptide / polypeptide complex can then optionally be purified.
[0375] Fc regions
[0376] In some embodiments, an antigen-binding molecule of the present disclosure (e.g. an antigen-binding moiety thereof) comprises an Fc region. As used herein, an ‘Fc region’ refers to a polypeptide complex formed by interaction between two polypeptides, each polypeptide comprising the CH2-CH3 region of an immunoglobulin (Ig) heavy chain constant sequence. Herein, a ‘CH2 domain’ refers to an amino acid sequence corresponding to the CH2 domain of an immunoglobulin (Ig). The CH2 domain is the region of an Ig formed by positions 231 to 340 of the immunoglobulin constant domain, according to the EU numbering system described in Edelman et al., Proc Natl Acad Sci USA (1969) 63(1): 78-85. A ‘CH3 domain’ refers to an amino acid sequence corresponding to the CH3 domain of an immunoglobulin (Ig). The CH3 domain is the region of an Ig formed by positions 341 to 447 of the immunoglobulin constant domain, according to the EU numbering system described in Edelman et al., Proc Natl Acad Sci USA (1969) 63(1): 78-85. A ‘CH2-CH3 region’ refers to an amino acid sequence corresponding to the CH2 and CH3 domains of an immunoglobulin (Ig). The CH2-CH3 region is the region of an Ig formed by positions 231 to 447 of the immunoglobulin constant domain, according to the EU numbering system described in Edelman et al., Proc Natl Acad Sci USA (1969) 63(1): 78-85.
[0377] In some embodiments, a CH2 domain, CH3 domain and / or a CH2-CH3 region according to the present disclosure corresponds to the CH2 domain / CH3 domain / CH2-CH3 region of an IgG (e.g. IgG 1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, Ig E or IgM. In some embodiments, the CH2 domain, CH3 domain and / or a CH2-CH3 region corresponds to the CH2 domain / CH3 domain / CH2-CH3 region of a human IgG (e.g. hlgG 1 , hlgG2, hlgG3, hlgG4), hlgA (e.g. hlgA1 , hlgA2), hlgD, hlgE or hlgM. In some embodiments, the CH2 domain, CH3 domain and / or a CH2-CH3 region corresponds to the CH2 domain / CH3 domain / CH2-CH3 region of a human lgG1 allotype (e.g. G1 m1 , G1 m2, G1 m3 or G1 m17). In some embodiments, the CH2 domain, CH3 domain and / or a CH2-CH3 region corresponds to the CH2 domain / CH3 domain / CH2-CH3 region of human lgG1 allotype G1 m3.
[0378] Fc regions provide for interaction with Fc receptors and other molecules of the immune system to bring about functional effects. Fc-mediated effector functions are reviewed e.g. in Jefferis et al., Immunol Rev 1998 163:59-76 (hereby incorporated by reference in its entirety), and are brought about through Fc- mediated recruitment and activation of immune cells (e.g. macrophages, dendritic cells, neutrophils, basophils, eosinophils, platelets, mast cells, NK cells and T cells) through interaction between the Fc region and Fc receptors expressed by the immune cells, recruitment of complement pathway components through binding of the Fc region to complement protein C1q, and consequent activation of the complement cascade. Fc-mediated functions include Fc receptor binding, antibody-dependent cellular cytotoxicity (ADCC), antibody-dependent cell-mediated phagocytosis (ADCP), complement-dependent cytotoxicity (CDC), formation of the membrane attack complex (MAC), cell degranulation, cytokine and / or chemokine production, and antigen processing and presentation.
[0379] In some embodiments, an antigen-binding molecule according to the present disclosure comprises one or more (e.g. two) polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91%, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:9 or 10. In some embodiments, the antigen-binding molecule comprises an Fc region comprising one or more (e.g. two) polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91 %, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:9 or 10.
[0380] Modifications to antibody Fc regions that influence Fc-mediated functions are known in the art, such as those described e.g. in Wang et al., Protein Cell (2018) 9(1):63-73, which is hereby incorporated by reference in its entirety. Exemplary Fc region modifications known to influence antibody effector function are summarised in Table 1 of Wang et al., Protein Cell (2018) 9(1):63-73. In some embodiments, the antigen-binding molecule of the present disclosure comprises an Fc region comprising modification to increase or reduce an Fc-mediated function as compared to an antigen-binding molecule comprising the corresponding unmodified Fc region. Where an Fc region / CH2 / CH3 is described as comprising modification(s) ‘corresponding to’ reference substitution(s), equivalent substitution(s) in the homologous Fc / CH2 / CH3 are contemplated.
[0381] In some embodiments, the antigen-binding molecule of the present disclosure comprises an Fc region comprising modification. In some embodiments, the antigen-binding molecule of the present disclosure comprises an Fc region comprising modification in one or more of the CH2 and / or CH3 regions.
[0382] In some embodiments, the Fc region comprises modification to reduce / prevent an Fc-mediated function (e.g. ADCC, ADCP, CDC). In some embodiments, the Fc region comprises modification to reduce / prevent ADCC. In some embodiments, the Fc region comprises modification to reduce / prevent CDC. In some embodiments, the Fc region comprises modification to reduce / prevent binding to an Fc receptor. In some embodiments, the Fc region comprises modification to reduce / prevent binding to an Fey receptor. In some embodiments, the Fc region comprises modification to reduce / prevent glycosylation of the amino acid residue corresponding to N297.
[0383] In some embodiments, the Fc region comprises modification at the amino acid residue corresponding to N297. In some embodiments, the Fc region comprises modification corresponding to N297A or N297Q or N297G as described in Leabman et al., Mabs. (2013) 5:896-903. Substitution of ‘N297’ with ‘A’, ‘G’ or ‘Q’ is known to eliminate glycosylation, and thereby reduce Fc binding to C1 q and Fey receptors, and thus also reducing CDC and ADCC. In some embodiments, the Fc region comprises modification corresponding to N297A.
[0384] In some embodiments, an antigen-binding molecule according to the present disclosure comprises one or more (e.g. two) polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91 %, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:20 or 21. In some embodiments, the antigen-binding molecule comprises an Fc region comprising one or more (e.g. two) polypeptides comprising an amino acid sequence having at least 60% amino acid sequence identity, e.g. one of >70%, >75%, >80%, >85%, >86%, >87%, >88%, >89%, >90%, >91 %, >92%, >93%, >94%, >95%, >96%, >97%, >98%, >99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NQ:20 or 21 . Functional properties of the antigen-binding molecules
[0385] The antigen-binding molecules described herein may be characterised by reference to certain functional properties. In some embodiments, an antigen-binding molecule described herein may possess one or more of the following properties: binds to cells expressing the target antigen for the antigen-binding molecule; inhibits proliferation of cells expressing the target antigen for the antigen-binding molecule; increases killing of cells expressing the target antigen for the antigen-binding molecule; inhibits proliferation and / or increases killing of cells (e.g. cells that do not express the target antigen) in proximity to a cell expressing the target antigen for the antigen-binding molecule; inhibits tumor growth and / or reduces tumor size / volume (e.g. of a cancer expressing the target antigen for the antigen-binding molecule); increases survival of subjects having a cancer (e.g. a cancer expressing the target antigen for the antigen-binding molecule).
[0386] It will be appreciated that a given antigen-binding molecule may display more than one of the properties recited in the preceding paragraph. A given antigen-binding molecule may be evaluated for the properties recited in the preceding paragraph using suitable assays. For example, the assays may be e.g. in vitro assays, optionally cell-based assays or cell-free assays. In some embodiments, the assays may be e.g. in vivo assays, i.e. performed in non-human animals. In some embodiments, the assays may be e.g. ex vivo assays, i.e. performed using cells / tissue / an organ obtained from a subject.
[0387] Where assays are cell-based assays, they may comprise treating cells with an antigen-binding molecule in order to determine whether the antigen-binding molecule displays one or more of the recited properties. Assays may employ species labelled with detectable entities in order to facilitate their detection. Assays may comprise evaluating the recited properties following treatment of cells separately with a range of quantities / concentrations of a given antigen-binding molecule (e.g. a dilution series).
[0388] Analysis of the results of such assays may comprise determining the concentration at which 50% of the maximal level of the relevant activity is attained. The concentration of a given agent at which 50% of the maximal level of the relevant activity is attained may be referred to as the ‘half-maximal effective concentration’ of the agent in relation to the relevant activity, which may also be referred to as the ‘EC50’. Depending on the property, the EC50 may also be referred to as the ‘half-maximal inhibitory concentration’ or ‘IC50’, this being the concentration of the agent at which 50% of the maximal level of inhibition of a given property is observed.
[0389] In some embodiments, the antigen-binding molecule of the present disclosure binds to its target antigen in a region which is accessible to an antigen-binding molecule (i.e., an extracellular antigen-binding molecule) when the relevant antigen is expressed at the cell surface (i.e. in or at the cell membrane). In some embodiments, the antigen-binding molecule binds to its target antigen when it is expressed at the cell surface. In some embodiments, the antigen-binding molecule binds to cells expressing its target antigen.
[0390] The ability of an antigen-binding molecule to bind to a given cell type can be analyzed by contacting cells with the antigen-binding molecule, and detecting antigen-binding molecule bound to the cells, e.g. after a washing step to remove unbound antigen-binding molecule. The ability of an antigen-binding molecule to bind to cells expressing a given target antigen can be analyzed by methods such as flow cytometry and immunofluorescence microscopy.
[0391] In some embodiments, the antigen-binding molecule inhibits proliferation of cells expressing the target antigen for the antigen-binding molecule. The ability of an antigen-binding molecule to inhibit proliferation of a given cell type can be analyzed by contacting cells with the antigen-binding molecule, and subsequently evaluating proliferation of the cells ( / .e. after a period of time sufficient for an effect on cell proliferation to be observed). Cell proliferation can be evaluated e.g. by detecting changes in number of cells over time, or by in vitro analysis of incorporation of3H-thymidine or by CFSE dilution assay, e.g. as described in Fulcher and Wong, Immunol Cell Biol (1999) 77(6): 559-564, hereby incorporated by reference in entirety.
[0392] In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting proliferation of cells expressing the target antigen for the antigen-binding molecule to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of proliferation of the same cells observed in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule known not to influence proliferation of cells expressing the relevant target antigen), in a given assay.
[0393] In some embodiments, the antigen-binding molecule described herein inhibits proliferation of cells expressing the target antigen for the antigen-binding molecule with an IC50 of 100 nM or less, preferably one of <50 nM, <40 nM, <30 nM, <20 nM, <10 nM, <5 nM, <4 nM, <3 nM, <2 nM, <1 nM, <900 pM, <800 pM, <700 pM, <600 pM or <500 pM.
[0394] In some embodiments, the antigen-binding molecule inhibits proliferation of cells (e.g. cells that do not express the target antigen) in proximity to a cell expressing the target antigen for the antigen-binding molecule.
[0395] As used herein, ‘in proximity to’ a cell expressing the target antigen for the antigen-binding molecule, refers to the region / area within 100 pm of the cell expressing the target antigen. Cells in proximity to a cell expressing the target antigen for the antigen-binding molecule, may also be referred to as surrounding cells or bystander cells. Such cells may or may not express the target antigen for the antigen-binding molecule themselves. In some embodiments, cells in proximity to a cell expressing the target antigen for the antigen-binding molecule may be within 100 pm (e.g. within 90 pm, 80 pm, 70 pm, 60 pm, 50 pm, 40 pm, 30 pm, 20 pm, or 10 pm) of the cell expressing the target antigen.
[0396] In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting proliferation of cells (e.g. cells that do not express the target antigen) in proximity to a cell expressing the target antigen for the antigen-binding molecule to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of proliferation of the same cells observed in the absence of the antigenbinding molecule (or in the presence of an appropriate control antigen-binding molecule known not to influence proliferation of cells in proximity to a cell expressing the target antigen for the antigen-binding molecule).
[0397] In some embodiments, the antigen-binding molecule does not inhibit proliferation of cells (e.g. cells that do not express the target antigen) in proximity to a cell expressing the target antigen for the antigenbinding molecule.
[0398] In some embodiments, the antigen-binding molecule according to the present disclosure potentiates ( / .e. upregulates, enhances) cell killing of cells comprising / expressing the target antigen for the antigenbinding molecule.
[0399] In some embodiments, an antigen-binding molecule according to the present disclosure may inhibit growth or reduce metastasis of a cancer comprising cells comprising / expressing the target antigen for the antigen-binding molecule. In some embodiments, an antigen-binding molecule may potentiate ( / .e. upregulate, enhance) cell killing of cells comprising / expressing the target antigen for the antigen-binding molecule. In some embodiments, an antigen-binding molecule may potentiate ( / .e. upregulate, enhance) cell killing of cells (e.g. cells that do not comprise / express the target antigen) in proximity to a cell comprising / expressing the target antigen for the antigen-binding molecule. In some embodiments, an antigen-binding molecule does not potentiate ( / .e. upregulate, enhance) cell killing of cells (e.g. cells that do not comprise / express the target antigen) in proximity to a cell comprising / expressing the target antigen for the antigen-binding molecule. In some embodiments, an antigen-binding molecule may inhibit growth of cells of a cancer, or may inhibit growth of a tumor, comprising cells comprising / expressing the target antigen for the antigen-binding molecule. In some embodiments, an antigen-binding molecule may inhibit metastasis of a cancer / tumor comprising cells comprising / expressing the target antigen for the antigenbinding molecule.
[0400] In some embodiments, an antigen-binding molecule according to the present disclosure may inhibit growth or reduce metastasis of a cancer comprising (i) cells comprising / expressing the target antigen for the antigen-binding molecule, and (ii) cells not comprising / expressing the target antigen for the antigenbinding molecule. In some embodiments, an antigen-binding molecule may inhibit growth of cells of a cancer, or may inhibit growth of a tumor, comprising (i) cells comprising / expressing the target antigen for the antigen-binding molecule, and (ii) cells not comprising / expressing the target antigen for the antigenbinding molecule. In some embodiments, an antigen-binding molecule may inhibit metastasis of a cancer / tumor comprising (i) cells comprising / expressing the target antigen for the antigen-binding molecule and (ii) cells not comprising / expressing the target antigen for the antigen-binding molecule. Cell killing can be investigated, for example, using any of the methods reviewed in Zaritskaya et al., Expert Rev Vaccines (2011), 9(6):601-616, hereby incorporated by reference in its entirety. Examples of in vitro assays of cytotoxicity / cell killing assays include release assays such as the51Cr release assay, the lactate dehydrogenase (LDH) release assay, the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) release assay, ATP release assay using Cell Titre Gio, and the calcein-acetoxymethyl (calcein-AM) release assay. These assays measure cell killing based on the detection of factors released from lysed cells.
[0401] In some embodiments an antigen-binding molecule according to the present disclosure is capable of reducing the number / proportion of cells expressing the target antigen for the antigen-binding molecule. In some embodiments, an antigen-binding molecule according to the present disclosure is capable of depleting / enhancing depletion of such cells.
[0402] In some embodiments, an antigen-binding molecule of the present disclosure displays anticancer activity. In some embodiments, the antigen-binding molecule increases killing of cancer cells. In some embodiments, the antigen-binding molecule causes a reduction in the number of cancer cells in vivo, e.g. as compared to an appropriate control condition. The cancer may be a cancer as described herein, e.g. a cancer expressing / overexpressing the target antigen for the antigen-binding molecule.
[0403] In some embodiments, an antigen-binding molecule according to the present disclosure reduces / inhibits growth of a cancer and / or of a tumor of a cancer. In some embodiments, an antigen-binding molecule reduces tissue invasion by cells of a cancer. In some embodiments, an antigen-binding molecule reduces metastasis of a cancer. In some embodiments, an antigen-binding molecule displays anticancer activity. In some embodiments, an antigen-binding molecule reduces the growth / proliferation of cancer cells. In some embodiments, an antigen-binding molecule reduces the survival of cancer cells. In some embodiments, an antigen-binding molecule increases the killing of cancer cells. In some embodiments, an antigen-binding molecule of the present disclosure causes a reduction in the number of cancer cells e.g. in vivo. The cancer may be a cancer comprising cells expressing the target antigen for the antigenbinding molecule. The cancer may be a cancer comprising cells expressing the target antigen for the antigen-binding molecule and cells that do not express the target antigen for the antigen-binding molecule.
[0404] An antigen-binding molecule of the present disclosure may be analyzed for the properties described in the preceding paragraph in appropriate assays. Such assays include e.g. in vivo models.
[0405] In some embodiments, administration of an antigen-binding molecule according to the present disclosure may cause one or more of: inhibition of the development / progression of the cancer, a delay to / prevention of onset of the cancer, a reduction in / delay to / prevention of tumor growth, a reduction in / delay to / prevention of tissue invasion, a reduction in / delay to / prevention of metastasis, a reduction in the severity of one or more symptoms of the cancer, a reduction in the number of cancer cells, a reduction in the cancer burden, a reduction in tumor size / volume, and / or an increase in survival of subjects having the cancer (e.g. progression free survival or overall survival), e.g. as determined in an appropriate model.
[0406] It will be appreciated that the properties recited in the preceding paragraph are evaluated after a period of time sufficient for an effect associated with treatment using the antigen-binding molecule to be observed. Tumor growth may be monitored by investigating tumor volume over time. Tumor growth may be evaluated by measuring tumor volume (e.g. in mm3) over time.
[0407] In some embodiments, an antigen-binding molecule of the present disclosure is capable of reducing tumor size / volume (e.g. the mean tumor size / volume for the treatment group in an in vivo model, e.g. of a cancer expressing the target antigen for the antigen-binding molecule) to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the tumor size / volume observed at the same time point in the absence of treatment with the antigen-binding molecule (or following treatment with an appropriate control antigen-binding molecule known not to influence tumor growth), in a given assay. In some embodiments, evaluation of tumor size / volume for the purposes of such comparison is performed after more than 5 days, e.g. one of >10 days, >15 days, >20 days, >25 days, >30 days, >35 days, >40 days, >35 days, >50 days, >55 days, >60 days, >65 days, >70 days, >75 days, >80 days, >85 days, >90 days, >95 days or >100 days following administration of the first dose of the antigen-binding molecule, in the relevant model.
[0408] In some embodiments, an antigen-binding molecule of the present disclosure achieves a level of tumor growth inhibition (e.g. expressed as % tumor growth inhibition, e.g. calculated relative to tumor growth observed on treatment with an appropriate control antigen-binding molecule) which is greater than 1 times, e.g. one of >1 .01 times, >1 .02 times, >1 .03 times, >1 .04 times, >1 .05 times, >1 .1 times, >1 .2 times, >1 .3 times, >1 .4 times, >1 .5 times, >1 .6 times, >1 .7 times, >1 .8 times, >1 .9 times, >2 times, >3 times, >4 times, >5 times, >6 times, >7 times, >8 times, >9 times or >10 times the level of tumor growth inhibition observed at the same time point in the absence of treatment with the antigen-binding molecule (or following treatment with an appropriate control antigen-binding molecule known not to influence tumor growth), in a given assay. In some embodiments, evaluation of tumor growth inhibition for the purposes of such comparison is performed after more than 5 days, e.g. one of >10 days, >15 days, >20 days, >25 days, >30 days, >35 days, >40 days, >35 days, >50 days, >55 days, >60 days, >65 days, >70 days, >75 days, >80 days, >85 days, >90 days, >95 days or >100 days following administration of the first dose of the antigen-binding molecule, in the relevant model.
[0409] In some embodiments, an antigen-binding molecule of the present disclosure is capable of increasing median survival of subjects having a cancer (e.g. in an in vivo model, e.g. of a cancer expressing the target antigen for the antigen-binding molecule) to greater than 1 times, e.g. one of >1 .01 times, >1 .02 times, >1 .03 times, >1 .04 times, >1 .05 times, >1 .1 times, >1 .2 times, >1 .3 times, >1 .4 times, >1 .5 times, >1 .6 times, >1 .7 times, >1 .8 times, >1 .9 times, >2 times, >3 times, >4 times, >5 times, >6 times, >7 times, >8 times, >9 times or >10 times the median survival observed in the absence of treatment with the antigen-binding molecule (or following treatment with an appropriate control antigen-binding molecule known not to influence survival of subjects having the cancer), in a given assay. Median survival may be expressed in days from the start of the experiment, for subjects in the relevant treatment groups. It will be appreciated that a cancer expressing the target antigen for the antigen-binding molecule may comprise cells comprising / expressing the target antigen and may further comprise cells which do not comprise / express the target antigen.
[0410] In some embodiments, an antigen-binding molecule according to the present disclosure possesses one or more novel, similar or improved functional properties as compared to: (i) an antigen-binding molecule comprising the same target antigen-binding moiety, and comprising only a TOP1 inhibitor moiety ( / .e. not also comprising a DDR inhibitor moiety), and / or (ii) an antigen-binding molecule comprising the same target antigen-binding moiety, and comprising only a DDR inhibitor moiety ( / .e. not also comprising a TOP1 inhibitor moiety).
[0411] In some embodiments, an antigen-binding molecule according to the present disclosure possesses one or more novel, similar or improved functional properties as compared to: (i) an antigen-binding molecule comprising the same target antigen-binding moiety, and comprising only the same TOP1 inhibitor moiety as the antigen-binding molecule ( / .e. not comprising the DDR inhibitor moiety of the antigen-binding molecule), and / or (ii) an antigen-binding molecule comprising the same target antigen-binding moiety, and comprising only the same DDR inhibitor moiety as the antigen-binding molecule ( / .e. not comprising the TOP1 inhibitor moiety of the antigen-binding molecule). For conciseness, in the following paragraphs, ‘an antigen-binding molecule comprising the same target antigen-binding moiety, and comprising only the same TOP1 inhibitor moiety as the antigen-binding molecule ( / .e. not comprising the DDR inhibitor moiety of the antigen-binding molecule)’ is referred to simply as ‘an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety’, and ‘an antigen-binding molecule comprising the same target antigen-binding moiety, and comprising only the same DDR inhibitor moiety as the antigen-binding molecule ( / .e. not comprising the TOP1 inhibitor moiety of the antigen-binding molecule)’ is referred to simply as ‘an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety’.
[0412] In some embodiments, an antigen-binding molecule according to the present disclosure may display one or more of the following: similar binding to cells expressing the relevant target antigen for the antigen-binding molecule, as compared to an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety; increased killing of cells expressing the relevant target antigen for the antigen-binding molecule, as compared to killing of such cells displayed by an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety; similar killing of cells (e.g. cells that do not express the target antigen) in proximity to a cell expressing the target antigen for the antigen-binding molecule; increased inhibition of tumor growth and / or a greater reduction of tumor size / volume (e.g. of a cancer expressing the relevant target antigen for the antigen-binding molecule), as compared to tumor growth inhibition / reduction in tumor size / volume displayed by an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety; similar internalization into cells expressing the relevant target antigen for the antigen-binding molecule, as compared to internalization displayed by an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety; similar toxicological properties, as compared to those of an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety.
[0413] In accordance with the preceding paragraph, a level of a given property / outcome which is ‘similar to’ a reference level may be >0.5 times and <2 times, e.g. one of >0.55 times and <1 .9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1.4 times, >0.85 times and <1 .3 times, >0.9 times and <1.2 times or >0.95 times and <1 .1 times the reference level. In some embodiments, a level of a given property / outcome which is ‘increased’ relative to a reference level may be greater than 1 times, e.g. one of >1.01 times, >1.02 times, >1.03 times, >1 .04 times, >1 .05 times, >1.1 times, >1 .2 times, >1 .3 times, >1 .4 times, >1 .5 times, >1 .6 times, >1 .7 times, >1 .8 times, >1 .9 times, >2 times, >3 times, >4 times or >5 times the reference level. In some embodiments, a level of a given property / outcome which is ‘reduced’ relative to a reference level may be less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the reference level.
[0414] It will be appreciated that for the purposes of such evaluations, equivalent amounts of the antigen-binding molecule and the comparator antigen-binding molecule only comprising the TOP1 / DDR inhibitor moiety may be compared. In some embodiments, amounts of the different antigen-binding molecules providing equivalent amounts of the respective payloads are employed.
[0415] In some embodiments, the antigen-binding molecule of the present disclosure binds to cells expressing the relevant target antigen for the antigen-binding molecule with an EC50 which is similar to the EC50 with which an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety binds to the relevant cells, in a given assay. In some embodiments, the EC50 for binding of the antigen-binding molecule to cells expressing the relevant target antigen is >0.5 times and <2 times, e.g. one of >0.55 times and <1 .9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1 .4 times, >0.85 times and <1 .3 times, >0.9 times and <1 .2 times or >0.95 times and <1 .1 times the EC50 for binding of an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety to cells of the same type, as determined in the same assay.
[0416] In some embodiments, the antigen-binding molecule of the present disclosure increases the killing of cells expressing the relevant target antigen for the antigen-binding molecule to a level that is greater than the level of killing of the same cells displayed by an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, in a given assay. In some embodiments, the antigen-binding molecule increases the killing of cells expressing the relevant target antigen for the antigen-binding molecule (e.g. cancer cells expressing the relevant target antigen for the antigen-binding molecule) to a level that is greater than 1 times, e.g. one of >1 .01 times, >1 .02 times, >1 .03 times, >1 .04 times, >1 .05 times, >1 .1 times, >1 .2 times, >1 .3 times, >1 .4 times, >1 .5 times, >1 .6 times, >1 .7 times, >1 .8 times, >1 .9 times, >2 times, >3 times, >4 times, >5 times, >6 times, >7 times, >8 times, >9 times or >10 times the level of cell killing of the relevant cells displayed by an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay.
[0417] In some embodiments, the antigen-binding molecule of the present disclosure kills cells expressing the relevant target antigen for the antigen-binding molecule with an EC50 which is less than the EC50 with which an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety kills the relevant cells, in a given assay. In some embodiments, the EC50 of the antigen-binding molecule of the present disclosure for killing cells expressing the relevant target antigen is less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the EC50 for killing cells of the same type for an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay.
[0418] In some embodiments, the antigen-binding molecule of the present disclosure kills cells (e.g. cells that do not express the target antigen) in proximity to a cell expressing the target antigen for the antigen-binding molecule with an EC50 which is similar to the EC50 with which an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety kills the relevant cells, in a given assay. In some embodiments, the EC50 of the antigen-binding molecule of the present disclosure for killing cells (e.g. cells that do not express the target antigen) in proximity to a cell expressing the target antigen for the antigen-binding molecule is >0.5 times and <2 times, e.g. one of >0.55 times and <1 .9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1 .4 times, >0.85 times and <1 .3 times, >0.9 times and <1 .2 times or >0.95 times and <1.1 times the EC50 for killing cells of the same type for an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay.
[0419] In some embodiments, the antigen-binding molecule of the present disclosure reduces tumor size / volume to a level that is greater than the level of reduction in tumor size / volume observed following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, in a given assay. In some embodiments, the antigen-binding molecule is capable of reducing tumor size / volume (e.g. the mean tumor size / volume for the treatment group in an in vivo model, e.g. of a cancer expressing the relevant target antigen for the antigen-binding molecule) to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the tumor size / volume observed at the same time point following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay. In some embodiments, evaluation of tumor size / volume for the purposes of such comparison is performed after more than 5 days, e.g. one of >10 days, >15 days, >20 days, >25 days, >30 days, >35 days, >40 days, >35 days, >50 days, >55 days, >60 days, >65 days, >70 days, >75 days, >80 days, >85 days, >90 days, >95 days or >100 days following administration of the first dose of the relevant antigen-binding molecule, in the relevant model.
[0420] In some embodiments, the antigen-binding molecule of the present disclosure achieves a level of tumor growth inhibition that is greater than the tumor growth inhibition observed following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, in a given assay. In some embodiments, the antigen-binding molecule achieves a level of tumor growth inhibition (e.g. expressed as % tumor growth inhibition, e.g. calculated relative to tumor growth observed on treatment with an appropriate control antigen-binding molecule) which is greater than 1 times, e.g. one of >1.01 times, >1 .02 times, >1 .03 times, >1 .04 times, >1 .05 times, >1 .1 times, >1 .2 times, >1 .3 times, >1 .4 times, >1.5 times, >1 .6 times, >1 .7 times, >1 .8 times, >1 .9 times, >2 times, >3 times, >4 times, >5 times, >6 times, >7 times, >8 times, >9 times or >10 times the level of tumor growth inhibition observed at the same time point following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay. In some embodiments, evaluation of tumor size / volume for the purposes of such comparison is performed after more than 5 days, e.g. one of >10 days, >15 days, >20 days, >25 days, >30 days, >35 days, >40 days, >35 days, >50 days, >55 days, >60 days, >65 days, >70 days, >75 days, >80 days, >85 days, >90 days, >95 days or >100 days following administration of the first dose of the relevant antigen-binding molecule, in the relevant model. In some embodiments, the antigen-binding molecule of the present disclosure achieves a synergistic level of killing of cells expressing the relevant target antigen for the antigen-binding molecule, as compared to the level of cell killing achieved individually by equivalent antigen-binding molecules comprising only the TOP1 inhibitor or DDR inhibitor moiety. That is, in some embodiments, the antigen-binding molecule of the present disclosure achieves a level of cell killing that is synergistic ( / .e. super-additive), relative to what is observed when equivalent antigen-binding molecules comprising only the TOP1 inhibitor or DDR inhibitor moiety are used alone.
[0421] In some embodiments, the antigen-binding molecule of the present disclosure achieves a synergistic level of tumor growth inhibition and / or a synergistic reduction in tumor size / volume, as compared to the level of achieved individually by equivalent antigen-binding molecules comprising only the TOP1 inhibitor or DDR inhibitor moiety. That is, in some embodiments, the antigen-binding molecule of the present disclosure achieves a level of tumor growth inhibition and / or a reduction of tumor size / volume that is synergistic ( / .e. super-additive), relative to what is observed when equivalent antigen-binding molecules comprising only the TOP1 inhibitor or DDR inhibitor moiety are used alone.
[0422] As used herein, a ‘synergistic’ or ‘super-additive’ level of a relevant effect (e.g. cell killing, inhibition of tumor growth, reduction in tumor size / volume) for a given antigen-binding molecule refers to a level of the effect which is greater than the sum of the effects observed for the individual comparator molecules ( / .e. an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety, and an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety), when used alone.
[0423] Quantitative methods for assessing synergism are described e.g. in Tallarida, Genes Cancer. (2011) 2(11):1003-1008 and Chou, Cancer Res (2010) 70:440-446, both of which are hereby incorporated by reference in their entirety. Additive, synergistic and antagonistic effects may be evaluated in experiments in which a range of different doses of an antigen-binding molecule of the disclosure and equivalent antigen-binding molecules comprising only the TOP1 or DDR inhibitor moiety are evaluated for the relevant effect. Dose-response curves may be plotted, and evaluated in order to determine whether the antigen-binding molecule of the disclosure achieves a synergistic level of the relevant effect relative to the equivalent antigen-binding molecules comprising only the TOP1 or DDR inhibitor moiety. In some embodiments, synergy may be evaluated using combination / composition index (Cl) values calculated using the Chou-Talalay method described in Chou, Cancer Res (2010) 70:440-446. According to the Chou-Talalay method, for a given antigen-binding molecule of the disclosure Cl = 1 indicates an additive effect, Cl <1 indicates synergism, and Cl >1 indicates antagonism.
[0424] In some embodiments, the antigen-binding molecule of the present disclosure displays similar internalization into cells expressing the relevant target antigen for the antigen-binding molecule, as compared to internalization into cells of the same type displayed by an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety. In some embodiments, the antigen-binding molecule is internalized into cells expressing the relevant target antigen for the antigen-binding molecule to a level that is >0.5 times and <2 times, e.g. one of >0.55 times and <1.9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1 .4 times, >0.85 times and <1.3 times, >0.9 times and <1 .2 times or >0.95 times and <1 .1 times the level of internalization of an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety into the relevant cells, as determined in the same assay. In some embodiments, evaluation of internalization for the purposes of such comparison is performed after incubation of the relevant antigen-binding molecule with the relevant cells for more than 5 min, e.g. one of >30 min, >1 h, >1 .5 h, >2 h or >2.5 h.
[0425] In some embodiments, the antigen-binding molecule of the present disclosure displays similar toxicity to subjects administered the antigen-binding molecule as compared to subjects administered an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety. In some embodiments, the antigen-binding molecule has a similar toxicological profile as compared to an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety.
[0426] In some embodiments, the number / proportion of red blood cells / white blood cells / lymphocytes / monocytes / neutrophils / platelets in the peripheral blood of a subject following administration of an antigen-binding molecule according to the present disclosure is >0.5 times and <2 times, e.g. one of >0.55 times and <1 .9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1 .4 times, >0.85 times and <1 .3 times, >0.9 times and <1 .2 times or >0.95 times and <1.1 times the number / proportion of such cells observed following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay.
[0427] In some embodiments, the hemoglobin concentration / hematocrit percentage / mean corpuscular volume, mean corpuscular hemoglobin / mean corpuscular hemoglobin concentration in the peripheral blood of a subject following administration of an antigen-binding molecule according to the present disclosure is >0.5 times and <2 times, e.g. one of >0.55 times and <1.9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1 .4 times, >0.85 times and <1.3 times, >0.9 times and <1 .2 times or >0.95 times and <1 .1 times the level observed following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay.
[0428] In some embodiments, the level of a correlate of hepatic function (e.g. alkaline phosphatase, alanine aminotransferase, albumin, total protein) in the peripheral blood of a subject following administration of an antigen-binding molecule according to the present disclosure is >0.5 times and <2 times, e.g. one of >0.55 times and <1 .9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1 .4 times, >0.85 times and <1 .3 times, >0.9 times and <1 .2 times or >0.95 times and <1.1 times the level observed in the peripheral blood of a subject following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay.
[0429] In some embodiments, the level of a correlate of renal function (e.g. blood urea nitrogen and / or creatinine) in the peripheral blood of a subject following administration of an antigen-binding molecule according to the present disclosure is >0.5 times and <2 times, e.g. one of >0.55 times and <1 .9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1 .4 times, >0.85 times and <1 .3 times, >0.9 times and <1 .2 times or >0.95 times and <1 .1 times the level observed in the peripheral blood of a subject following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay.
[0430] In some embodiments, the level of a correlate of pancreatic function (e.g. glucose and / or amylase) in the peripheral blood of a subject following administration of an antigen-binding molecule according to the present disclosure is >0.5 times and <2 times, e.g. one of >0.55 times and <1 .9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1.4 times, >0.85 times and <1 .3 times, >0.9 times and <1.2 times or >0.95 times and <1 .1 times the level observed in the peripheral blood of a subject following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay.
[0431] In some embodiments, the level of sodium / potassium / phosphate / calcium in the peripheral blood of a subject following administration of an antigen-binding molecule according to the present disclosure is >0.5 times and <2 times, e.g. one of >0.55 times and <1.9 times, >0.6 times and <1 .8 times, >0.65 times and <1 .7 times, >0.7 times and <1 .6 times, >0.75 times and <1 .5 times, >0.8 times and <1 .4 times, >0.85 times and <1.3 times, >0.9 times and <1 .2 times or >0.95 times and <1 .1 times the level observed in the peripheral blood of a subject following treatment with an equivalent antigen-binding molecule only comprising the TOP1 inhibitor moiety and / or an equivalent antigen-binding molecule only comprising the DDR inhibitor moiety, as determined in the same assay.
[0432] Additional sequences
[0433] The antigen-binding molecules of the present disclosure and their constituent polypeptides may additionally comprise further amino acids or sequences of amino acids.
[0434] The polypeptides of the present disclosure may comprise one or more linker sequences between sequences of amino acids. Linker sequences are known to the skilled person, and are described, for example in Chen et al., Adv Drug Deliv Rev (2013) 65(10): 1357-1369, which is hereby incorporated by reference in its entirety. In some embodiments, a linker sequence may be a flexible linker sequence. Flexible linker sequences allow for relative movement of the amino acid sequences which are linked by the linker sequence. Flexible linkers are known to the skilled person, and several are identified in Chen et al., Adv Drug Deliv Rev (2013) 65(10): 1357-1369. Flexible linker sequences often comprise high proportions of glycine and / or serine residues.
[0435] In some embodiments, the linker sequence comprises at least one glycine residue and / or at least one serine residue. In some embodiments, the linker sequence comprises or consists of glycine and serine residues. In some embodiments, the linker sequence has the structure: (GxS)n or (GxS)nGm; wherein G = glycine, S = serine, x = 3 or 4, n = 2, 3, 4, 5 or 6, and m = 0, 1 , 2 or 3. In some embodiments, the linker sequence comprises one or more (e.g. 1 , 2, 3, 4, 5 or 6) copies (e.g. in tandem) of the sequence motif G4S. In some embodiments, the linker sequence comprises or consists of (G4S)4 or (G4S)e. In some embodiments, the linker sequence has a length of 1-2, 1-3, 1-4, 1-5, 1-10, 1-15, 1-20, 1-25, or 1-30 amino acids.
[0436] The antigen-binding molecules of the present disclosure and their constituent polypeptides may comprise amino acid sequence(s) to facilitate expression, folding, trafficking, processing, purification or detection of the antigen-binding molecule / polypeptide. For example, antigen-binding molecules and polypeptides of the present disclosure may additionally comprise a sequence of amino acids forming a detectable moiety, e.g. as described hereinbelow.
[0437] The antigen-binding molecules of the present disclosure and their constituent polypeptides may additionally comprise a signal peptide (also known as a leader sequence or signal sequence). Signal peptides normally consist of a sequence of 5-30 hydrophobic amino acids, which form a single alpha helix. Secreted proteins and proteins expressed at the cell surface often comprise signal peptides. Signal peptides are known for many proteins, and are recorded in databases such as GenBank, UniProt and Ensembl, and / or can be identified / predicted e.g. using amino acid sequence analysis tools such as SignalP (Petersen et al., 2011 Nature Methods 8: 785-786) or Signal-BLAST (Frank and Sippl, 2008 Bioinformatics 24: 2172-2176).
[0438] The signal peptide may be present at the N-terminus of the polypeptide, and may be present in the newly synthesised polypeptide. The signal peptide provides for efficient trafficking of the polypeptide. Signal peptides are often removed by cleavage, and thus are not comprised in the mature polypeptide.
[0439] Signal peptides are known for many proteins, and are recorded in databases such as GenBank, UniProt, Swiss-Prot, TrEMBL, Protein Information Resource, Protein Data Bank, Ensembl, and InterPro, and / or can be identified / predicted e.g. using amino acid sequence analysis tools such as SignalP (Petersen et al., 2011 Nature Methods 8: 785-786) or Signal-BLAST (Frank and Sippl, 2008 Bioinformatics 24: 2172- 2176). Labels and conjugates
[0440] In some embodiments, the antigen-binding molecules of the present disclosure and their constituent polypeptides comprise a detectable moiety.
[0441] In some embodiments, a detectable moiety is a fluorescent label, phosphorescent label, luminescent label, immuno-detectable label (e.g. an epitope tag), radiolabel, chemical, nucleic acid or enzymatic label. An antigen-binding molecule or a constituent polypeptide thereof may be covalently or non-covalently labelled with the detectable moiety.
[0442] Fluorescent labels include e.g. fluorescein, rhodamine, allophycocyanin, eosine and NDB, green fluorescent protein (GFP), chelates of rare earths such as europium (Eu), terbium (Tb) and samarium (Sm), tetramethyl rhodamine, Texas Red, 4-methyl umbelliferone, 7-amino-4-methyl coumarin, Cy3, and Cy5. Radiolabels include radioisotopes such as Hydrogen3, Sulfur35, Carbon14, Phosphorus32, Iodine123, Iodine125, Iodine126, Iodine131, Iodine133, Bromine77, Technetium99m, Indium111, lndium113m, Gallium67, Gallium68, Ruthenium95, Ruthenium97, Ruthenium103, Ruthenium105, Mercury207, Mercury203, Rhenium99m, Rhenium101, Rhenium105, Scandium47, Tellurium121m, Tellurium122m, Tellurium125m, Thulium165, Thuliuml167, Thulium168, Copper67, Fluorine18, Yttrium90, Palladium100, Bismuth217and Antimony211. Luminescent labels include as radioluminescent, chemiluminescent (e.g. acridinium ester, luminol, isoluminol) and bioluminescent labels. Immuno-detectable labels include haptens, peptides / polypeptides, antibodies, receptors and ligands such as biotin, avidin, streptavidin or digoxigenin. Nucleic acid labels include aptamers.
[0443] In some embodiments, an antigen-binding molecule or a constituent polypeptide thereof comprises an epitope tag, e.g. a His, (e.g. 6XHis), FLAG, c-Myc, StrepTag, haemagglutinin, E, calmodulin-binding protein (CBP), glutathione-s-transferase (GST), maltose-binding protein (MBP), thioredoxin, S-peptide, T7 peptide, SH2 domain, avidin, streptavidin, and haptens (e.g. biotin, digoxigenin, dinitrophenol), optionally at the N- or C- terminus of the antigen-binding molecule / polypeptide.
[0444] In some embodiments, an antigen-binding molecule or a constituent polypeptide thereof polypeptide comprises a moiety having a detectable activity, e.g. an enzymatic moiety. Enzymatic moieties include e.g. luciferases, glucose oxidases, galactosidases (e.g. beta-galactosidase), glucoronidases, phosphatases (e.g. alkaline phosphatase), peroxidases (e.g. horseradish peroxidase) and cholinesterases.
[0445] Producing the antigen-binding molecules Antigen-binding molecules according to the present disclosure may be prepared according to methods for the production of antibody-drug conjugates known to the skilled person.
[0446] Antigen-binding moieties according to the present disclosure may be prepared by chemical synthesis, e.g. liquid or solid phase synthesis. For example, peptides / polypeptides can be synthesised using the methods described in, for example, Chandrudu et al., Molecules (2013), 18: 4373-4388, which is hereby incorporated by reference in its entirety.
[0447] Alternatively, antigen-binding moieties according to the present disclosure may be produced by recombinant expression. Molecular biology techniques suitable for recombinant production of polypeptides are well known in the art, such as those set out in Green and Sambrook, Molecular Cloning: A Laboratory Manual (4thEdition), Cold Spring Harbor Press, 2012, and in Nat Methods. (2008); 5(2): 135-146 both of which are hereby incorporated by reference in their entirety. Methods for the recombinant production of antigen-binding polypeptides are also described in Frenzel et al., Front Immunol. (2013); 4: 217 and Kunert and Reinhart, Appl Microbiol Biotechnol. (2016) 100: 3451-3461 , both of which are hereby incorporated by reference in their entirety.
[0448] In some cases, the antigen-binding moieties of the present disclosure are comprised of more than one polypeptide chain. In such cases, production of the antigen-binding moiety may comprise transcription and translation of more than one polypeptide, and subsequent association of the polypeptide chains to form the antigen-binding moiety.
[0449] For recombinant production according to the present disclosure, any cell suitable for the expression of polypeptides may be used. The cell may be a prokaryote or eukaryote. In some embodiments, the cell is a prokaryotic cell, such as a cell of archaea or bacteria. In some embodiments, the bacteria may be Gram-negative bacteria such as bacteria of the family Enterobacteriaceae, for example Escherichia coli. In some embodiments, the cell is a eukaryotic cell such as a yeast cell, a plant cell, insect cell or a mammalian cell, e.g. a cell described hereinabove. In some cases, the cell is not a prokaryotic cell because some prokaryotic cells do not allow for the same folding or post-translational modifications as eukaryotic cells. In addition, very high expression levels are possible in eukaryotes and proteins can be easier to purify from eukaryotes using appropriate tags. Specific plasmids may also be utilised which enhance secretion of the protein into the media.
[0450] In some embodiments polypeptides may be prepared by cell-free-protein synthesis (CFPS), e.g. according to a system described in Zemella et al. Chembiochem (2015) 16(17): 2420-2431 , which is hereby incorporated by reference in its entirety.
[0451] Production of antigen-binding moieties may involve culture or fermentation of a eukaryotic cell modified to express the polypeptide(s) of interest. The culture or fermentation may be performed in a bioreactor provided with an appropriate supply of nutrients, air / oxygen and / or growth factors. Secreted proteins can be collected by partitioning culture media / fermentation broth from the cells, extracting the protein content, and separating individual proteins to isolate secreted polypeptide(s). Culture, fermentation and separation techniques are well known to those of skill in the art, and are described, for example, in Green and Sambrook, Molecular Cloning: A Laboratory Manual (4thEdition; incorporated by reference herein above). Bioreactors include one or more vessels in which cells may be cultured. Culture in the bioreactor may occur continuously, with a continuous flow of reactants into, and a continuous flow of cultured cells from, the reactor. Alternatively, the culture may occur in batches. The bioreactor monitors and controls environmental conditions such as pH, oxygen, flow rates into and out of, and agitation within the vessel such that optimum conditions are provided for the cells being cultured.
[0452] Following culturing the cells that express the polypeptide(s), the polypeptide(s) of interest may be isolated. Any suitable method for separating proteins from cells known in the art may be used. In order to isolate the polypeptide, it may be necessary to separate the cells from nutrient medium. If the polypeptide(s) are secreted from the cells, the cells may be separated by centrifugation from the culture media that contains the secreted polypeptide(s) of interest. If the polypeptide(s) of interest collect within the cell, protein isolation may comprise centrifugation to separate cells from cell culture medium, treatment of the cell pellet with a lysis buffer, and cell disruption e.g. by Bonification, rapid freeze-thaw or osmotic lysis.
[0453] It may then be desirable to isolate the polypeptide(s) of interest from the supernatant or culture medium, which may contain other protein and non-protein components. A common approach to separating protein components from a supernatant or culture medium is by precipitation. Proteins of different solubilities are precipitated at different concentrations of precipitating agent such as ammonium sulfate. For example, at low concentrations of precipitating agent, water soluble proteins are extracted. Thus, by adding different increasing concentrations of precipitating agent, proteins of different solubilities may be distinguished. Dialysis may be subsequently used to remove ammonium sulfate from the separated proteins. Other methods for distinguishing different proteins are known in the art, for example ion exchange chromatography and size chromatography. These may be used as an alternative to precipitation or may be performed subsequently to precipitation.
[0454] Once the polypeptide(s) of interest have been isolated from culture it may be desired or necessary to concentrate the polypeptide(s). A number of methods for concentrating proteins are known in the art, such as ultrafiltration or lyophilisation.
[0455] Antigen-binding polypeptides / polypeptide complexes according to the present disclosure may be conjugated to linker-payload moieties according to the present disclosure for the production of antigenbinding molecules according to the present disclosure by any suitable techniques, which are well known to the skilled person and routinely employed in the art.
[0456] General methods for the conjugation of antigen-binding polypeptides / polypeptide complexes to linkerpayload moieties are described e.g. in Chudasama et al., Nature Chemistry, (2016), 8:114-119, Baah et al., Molecules. (2021) 26(10): 2943, and Walsh et al., Chem. Soc. Rev. (2021) 50:1305-1353, all of which are hereby incorporated by reference in their entirety. Conjugation of antigen-binding moieties and linkerpayload moieties and purification of antigen-binding molecules produced by such conjugation is described e.g. in Beck et al., (2017) Nat Rev Drug Discov 16: 315-337; Peters and Brown Biosci Rep (2015) 35: art:e00225; McCombs and Owen, The AAPS Journal (2015) 17: 339-351 ; Jackson, Org Process Res Dev (2016) 20: 852-866; and Olivier and Hurvitz, Antibody-Drug Conjugates: Fundamentals, Drug Development, and Clinical Outcome to Target Cancer (2016) Wiley.
[0457] Antigen-binding moieties according to the present disclosure may be conjugated to linker-payload moieties according to the present disclosure by any suitable techniques, which are well known to the skilled person and routinely employed in the art. Such methods are described e.g. in Chudasama et al., Nature Chemistry, (2016), 8:114-119, Baah etal., Molecules. (2021) 26(10): 2943, and Walsh et al., Chem. Soc. Rev. (2021) 50:1305-1353, all of which are hereby incorporated by reference in their entirety.
[0458] Conjugation of antigen-binding moieties and linker-payload moieties and the purification of antigenbinding molecules produced by such conjugation can be performed e.g. as described in in Beck et al., (2017) Nat Rev Drug Discov 16: 315-337; Peters and Brown Biosci Rep (2015) 35: art:e00225; McCombs and Owen, The AAPS Journal (2015) 17: 339-351 ; Jackson, Org Process Res Dev (2016) 20: 852-866; or Olivier and Hurvitz, Antibody-Drug Conjugates: Fundamentals, Drug Development, and Clinical Outcome to Target Cancer, (2016) Wiley, all of which are hereby incorporated by reference in their entirety. Other relevant disclosures relating to conjugation and linkers are: Tsuchikama and An, Protein Cell. (2018) 9(1): 33-46, Khongorzul et al., Mol Cancer Res (2020) 18 (1): 3-19 and Drago et al., Nature Reviews Clinical Oncology (2021) 18: 327-344, all of which are hereby incorporated by reference in their entirety.
[0459] Lysine amide coupling
[0460] Lysine-based conjugation is one of the most widely used non-specific conjugation strategies. Such conjugation occurs on reactive amine side chains of lysine residues due to their good nucleophilicity. Immunoglobulin scaffolds contains over 80 lysine residues, most of which are exposed on the surface of the molecule. Among the surface lysine residues, more than 20 have been shown as highly solvent- accessible and can serve as potential ADC conjugation sites. Lysine conjugation follows two main strategies that result in the formation of a stable amide or amidine bond between the protein and the drug-linker complex. Generally speaking, activated esters on the drug-linker complexes, often O- succinimide reagents such as N-hydroxysuccinimidyl (NHS) or sulfo-NHS esters, react with the antibody lysine residues and achieve the conjugation via amide bonds. On the other hand, stable amidine bonds can be generated on an antibody by the reaction of imido ester compounds, such as Traut’s reagent, with antibody lysine residues.
[0461] A one-step conjugation of a drug-linker moiety containing an amine-reactive group to the antibody via amide bonds is known, as well as two-step conjugation, where in the first step, a small bi-functional reagent containing both an amine- and a thiol-reactive functional groups is reacted with the available lysine e-amino groups to serve as a chemical adaptor, leaving free thiol-reactive groups on the antibody. In the second step, the payload drugs or drug-linker complexes are attached to the thiol-reactive groups introduced previously to form the ADC. The two-step approach is often used when the drug / drug-linker complex contains a thiol-reactive module or as an alternative route when introducing an amine-reactive module into the drug or drug-linker complex is proven to be difficult. Four small adaptors commonly used in the two-step conjugation: SPDB disulfide, MCC (maleimidomethyl cyclohexane-1 -carboxylate), sulfo- SPDB, and Hydrazine.
[0462] Cysteine coupling
[0463] Cysteine modification occurs most commonly by 1 ,4-conjugate addition to A / -substituted maleimides. Maleimides are particularly attractive reagents due to their synthetic accessibility and rapid reaction rates with cysteine under mild conditions. The resulting thiosuccinimide conjugates are inherently unstable, due to their propensity towards retro-Michael addition. This instability can be mitigated by forcing postconjugation hydrolysis of the thiosuccinimide, creating a stable chemical linkage. Accordingly, a number of “self-hydrolysing” maleimides have now been developed, with ring-opening catalysed by adjacent functional groups such as primary amine, polyethylene glycol (PEG) and A / -aryl amongst the most promising. Other reagents including a-halocarbonyls, palladium oxidative-addition complexes, ethynylphosphonamidates, vinylphosphonites and ethynylbenziodoxolones.
[0464] Some non-maleimide cysteine conjugations are summarised in Kang, et al., Chem Sci (2021) 12, 13613- 13647 (doi: 10.1039 / D1SC02973H), and include the use of:
[0465] (i) alkynyl carboxylic acid derivatives;
[0466] (ii) 5-methylene pyrrolone (5MP);
[0467] (iii) 5,5'-dithiobis-(2-nitrobenzoic acid) (DTNB);
[0468] (iv) phenyloxadiazole sulfone (PODS);
[0469] (v) aza-dibenzocyclooctyne (DBCO);
[0470] (vi) phosphonamidite;
[0471] (vii) 3-arylpropionitrile (APN);
[0472] (viii) perfluoroarene;
[0473] (ix) ethynylbenziodoxolone (EBX);
[0474] (x) bicyclo[1 .1 .0]butane (BOB) carboxylic amide; and
[0475] (xi) allenamide.
[0476] Another possible approach is described in Cheng, et al., Front. Oncol. 12:951589 (doi: 10.3389 / fonc.2022.951589) where 2-methylsulfonyl pyrimidine is used instead of a maleimide.
[0477] Genetic modification of the number of accessible cysteine residues on an antibody surface is a method to achieve site-selective and homogeneous modification. For example, in THIOMABs, the engineered cysteine is installed on an anti-MUC16 antibody by mutation of heavy chain alanine 114 (HC-A114).
[0478] Other approaches have engineered antibodies to contain cysteine mutations at D265C, S239C, E269C, K326C or A327C, or to insert additional cysteines before and after positions HC-S239, HC-A114, and LC- V205.
[0479] Non-natural amino acid incorporation by genetic engineering
[0480] Site-specific incorporation of non-canonical amino acids (ncAAs) into antibodies results in an efficient approach to the site-specific modification of antibodies, and therefore homogeneous ADCs. NcAAs bearing unique functionalities, such as ketones, azides, cyclopropenes or diene functional groups, have been developed and incorporated into antibodies. Such ncAAs include p-acetylphenylalanine (pAcF), which has a ketone side chain which can participate in oxime ligation reactions; Ne-(1- methylcycloprop-2-enecarboxamido)-lysine (CpK), which has a cyclopropene side chain which can participate in IEDDA reactions; para-azidomethyl phenylalanine (pAMF), which has a an azide side chain which can undergo click reactions; spiro[2.4]hepta-4,6-diene-lysine (SCpHK), which has a spiro[2.4]hepta-4,6-diene side chain which can participate in Diels-Alder reactions; and N6-(2- azidoethoxy)-carbonyl-L-lysine (AzK), which has a an azide side chain which can undergo click reactions.
[0481] Azide-containing ncAAs can undergo rapid CuAAC or SPAAC reactions under physiological conditions, para-azidophenylalanine (pAzF) can undergo reactions with, for example, cyclooctyne-functionalised linkers and dibenzylcyclooctyne (DBCO)-functionalised linkers. A cyclopropene derivative of lysine (N e-[((2-methylcycloprop-2-en-1-yl)methoxy)carbonyl]-l-lysine; CypK) can undergo a rapid and efficient inverse-electron demand Diels-Alder (IEDDA) reaction with a tetrazine-functionalised linker.
[0482] Cyclopentadiene-containing ncAAs, spiro[2.4]hepta-4,6-diene-lysine (SCpHK) and cyclopentadiene-lysine (CpHK), can undergo irreversible Diels-Alder cycloadditions with maleimide-modified drugs.
[0483] Enzymatic conjugation
[0484] Enzymes can be used to achieve site-selective antibody modification due to their high specificity and mild reaction conditions. Enzymes can either directly attach a payload to a specific amino acid sequence or introduce a reactive functionality on the antibody that can be further functionalised with the desired pay load.
[0485] Transpeptidation using sortase
[0486] Sortase-mediated antibody conjugation (SMAC) technology is an additional enzymatic ligation approach. SMAC-technology uses S. aureus sortase A, which is a transpeptidase that cleaves the amide bond between threonine and glycine residues in the LPXTG (X = any amino acid) pentapeptide motif, and subsequently catalyses the attachment of glycine-functionalised payloads to the newly generated C- terminus. The sortase recognition motif and a Strep II tag, which is used to aid removal of unreacted antibody, were fused to the light and heavy chain C-terminus of different antibodies. Sortase-mediated conjugation can then be used to attach a series of penta-glycine tagged payloads.
[0487] Transpeptidation using microbial transglutaminase
[0488] The use of bacterial transglutaminases is a powerful approach for site-specific incorporation of the payload into the antibody. A transglutaminase derived from Streptomyces mobaraensis catalyzes transpeptidation where a primary amine-containing linker is covalently attached to the primary amide side chain of a specific glutamine (Q295) within deglycosylated antibodies, resulting in ADCs with a defined DAR arising from the conjugation of 2 linker-payloads (one conjugation site per heavy chain). An N297Q mutation prior to this conjugation provides two more reaction sites (resulting in the conjugation of 4-linker- payloads). An alternative version using a peptide sequence-specific transglutaminase. This enzyme recognizes and utilizes LLQG motif that is genetically incorporated, resulting in site-specific antibody-drug conjugation. Another advantage of this LLQG-specific bacterial transglutaminase is that conjugation sites can be flexibly laid by inserting this short peptide motif within the antibody structure. Further alternative approaches allow for the use of transglutaminase without deglycosylation.
[0489] The DAR will depend on the number of payloads per linker-payload moieties conjugated.
[0490] N-Glycan engineering
[0491] Asn297 (N297) within the Fc domain and the N-glycan on this residue are conserved in all IgG classes, making these components attractive reaction sites for broadly applicable ADC conjugation. Incorporation of an aldehyde group on the N-glycan terminus using p-1 ,4-galactosyltransferase (GalT) and a-2,6- sialyltransferase (SialT) introduce a sialic acid on each N-glycan terminus, which is subsequently converted into an aldehyde group using NalO4 under mild oxidation conditions. The aldehyde groups generated can then be used to conjugate aminooxyfunctionalized payloads.
[0492] Another approach is to incorporate non-natural saccharides possessing orthogonal reaction handles into the antibody. A technology based on this strategy is the GlycoConnect in which the glycan chain at Asn297 is trimmed using the endoglycosidase Endo S2 and then azide groups are introduced using a mutant galactosyl transferase GalT(Y289L) and N-azidoacetylgalactosamine (GalNAz). The azide handles can be used for a strain-promoted click reaction with payloads.
[0493] In some embodiments, the linker-payload terminates in an amino group which is conjugated to the antigen-binding molecule using transglutaminase.
[0494] In some embodiments, the method further comprises purifying / isolating the antigen-binding molecule ( / .e. from unreacted precursors and / or by-products). In some embodiments, the antigen-binding molecule may be purified / isolated by chromatography, e.g. size-exclusion chromatography.
[0495] The present disclosure also provides an antigen-binding molecule obtained or obtainable by the methods of the present disclosure.
[0496] Compositions
[0497] The present disclosure provides a composition comprising an antigen-binding molecule according to the present disclosure.
[0498] The antigen-binding molecules described herein may be formulated as pharmaceutical compositions or medicaments for clinical use and may comprise a pharmaceutically-acceptable carrier, diluent, excipient or adjuvant. Thus, the present disclosure provides a pharmaceutical composition / medicament comprising an antigen-binding molecule described herein. The pharmaceutical compositions / medicaments of the present disclosure may comprise one or more pharmaceutically-acceptable carriers (e.g. liposomes, micelles, microspheres, nanoparticles), diluents / excipients (e.g. starch, cellulose, a cellulose derivative, a polyol, dextrose, maltodextrin, magnesium stearate), adjuvants, fillers, buffers, preservatives (e.g. vitamin A, vitamin E, vitamin C, retinyl palmitate, selenium, cysteine, methionine, citric acid, sodium citrate, methyl paraben, propyl paraben), anti-oxidants (e.g. vitamin A, vitamin E, vitamin C, retinyl palmitate, selenium), lubricants (e.g. magnesium stearate, talc, silica, stearic acid, vegetable stearin), binders (e.g. sucrose, lactose, starch, cellulose, gelatin, polyethylene glycol (PEG), polyvinylpyrrolidone (PVP), xylitol, sorbitol, mannitol), stabilisers, solubilisers, surfactants (e.g., wetting agents), masking agents or colouring agents (e.g. titanium oxide).
[0499] The term ‘pharmaceutically-acceptable’ as used herein pertains to compounds, ingredients, materials, compositions, dosage forms, etc., which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of the subject in question (e.g. a human subject) without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit / risk ratio. Each carrier, diluent, excipient, adjuvant, filler, buffer, preservative, anti-oxidant, lubricant, binder, stabiliser, solubiliser, surfactant, masking agent, colouring agent, flavouring agent or sweetening agent of a composition according to the present disclosure must also be ‘acceptable’ in the sense of being compatible with the other ingredients of the formulation. Suitable carriers, diluents, excipients, adjuvants, fillers, buffers, preservatives, anti-oxidants, lubricants, binders, stabilisers, solubilisers, surfactants, masking agents, colouring agents, flavouring agents or sweetening agents can be found in standard pharmaceutical texts, for example, Remington’s ‘The Science and Practice of Pharmacy’ (Ed. A. Adejare), 23rdEdition (2020), Academic Press.
[0500] Pharmaceutical compositions and medicaments of the present disclosure may be formulated for topical, parenteral, systemic, intracavitary, intravenous, intra-arterial, intramuscular, intrathecal, intraocular, intraconjunctival, intratumoral, subcutaneous, intradermal, intrathecal, oral or transdermal routes of administration. In some embodiments, a pharmaceutical composition / medicament may be formulated for administration by injection or infusion, or administration by ingestion.
[0501] Suitable formulations may comprise the antigen-binding molecule provided in a sterile or isotonic medium. Medicaments and pharmaceutical compositions may be formulated in fluid, including gel, form. Fluid formulations may be formulated for administration by injection or infusion (e.g. via catheter) to a selected region of the human or animal body.
[0502] In some embodiments, the pharmaceutical compositions / medicament is formulated for injection or infusion, e.g. into a blood vessel, tissue / organ of interest, or a tumor.
[0503] The present disclosure also provides methods for the production of pharmaceutically useful compositions, such methods of production may comprise one or more steps selected from: producing an antigen-binding molecule described herein; isolating / purifying an antigen-binding molecule described herein; and / or mixing an antigen-binding molecule described herein with a pharmaceutically-acceptable carrier, adjuvant, excipient or diluent.
[0504] For example, a further aspect of the present disclosure relates to a method of formulating or producing a medicament or pharmaceutical composition for use in the treatment of a disease / condition (e.g. a disease / condition described herein), the method comprising formulating a pharmaceutical composition or medicament by mixing an antigen-binding molecule described herein with a pharmaceutically-acceptable carrier, adjuvant, excipient or diluent.
[0505] The antigen-binding molecules and compositions described herein find use in therapeutic and prophylactic intervention for diseases, e.g. cancers.
[0506] It will be appreciated that the antigen-binding molecules and compositions of the present disclosure may be used for the treatment / prevention of any disease / condition that would derive therapeutic or prophylactic benefit from a reduction in the level of expression or activity of the target antigen for the antigen-binding molecule, or a reduction in the number or activity of cells comprising / expressing the target antigen for the antigen-binding molecule.
[0507] For example, the disease / condition may be a disease / condition in which the target antigen for the antigen-binding molecule, or cells expressing / overexpressing the target antigen for the antigen-binding molecule are pathologically-implicated, e.g. a disease / condition in which an increased level / activity of the target antigen for the antigen-binding molecule, or an increase in the number / proportion of cells comprising / expressing the target antigen for the antigen-binding molecule is positively associated with the onset, development or progression of the disease / condition, and / or severity of one or more symptoms of the disease / condition. In some embodiments, an increased level / activity of the target antigen for the antigen-binding molecule, or an increase in the number / proportion of cells comprising / expressing the target antigen for the antigen-binding molecule may be a risk factor for the onset, development or progression of the disease / condition.
[0508] The present disclosure provides an antigen-binding molecule or composition described herein for use in a method of medical treatment or prophylaxis.
[0509] In some embodiments, the disease / condition is a cancer. Also provided is an antigen-binding molecule or composition described herein for use in a method of treating or preventing a cancer (e.g. a cancer described herein). Also provided is the use of an antigen-binding molecule or composition described herein in the manufacture of a medicament for treating or preventing a cancer (e.g. a cancer described herein). Also provided is a method of treating or preventing a cancer (e.g. a cancer described herein) in a subject, comprising administering to a subject a therapeutically or prophylactically effective amount of an antigen-binding molecule or composition described herein. The methods may be effective to reduce the development or progression of a cancer, alleviation of the symptoms of a cancer or reduction in the pathology of a cancer. The methods may be effective to prevent progression of the cancer, e.g. to prevent worsening of, or to slow the rate of development of, the cancer. In some embodiments, the methods may lead to an improvement in the cancer, e.g. a reduction in the symptoms of the cancer or reduction in some other correlate of the severity / activity of the cancer. In some embodiments, the methods may prevent development of the cancer to a later stage (e.g. a chronic stage or metastasis).
[0510] As used herein, a ‘cancer’ may be or comprise any unwanted cell proliferation (or any disease manifesting itself by unwanted cell proliferation), neoplasm or tumor. The cancer may be benign or malignant. The cancer may be primary or secondary (metastatic). A neoplasm or tumor may be any abnormal growth or proliferation of cells and may be located in any tissue. The cancer may be of tissues / cells derived from e.g. the adrenal gland, adrenal medulla, anus, appendix, bladder, blood, bone, bone marrow, brain, breast, cecum, central nervous system (including or excluding the brain) cerebellum, cervix, colon, duodenum, endometrium, epithelial cells (e.g. renal epithelia), gallbladder, biliary tract, oesophagus, glial cells, heart, ileum, jejunum, kidney, lacrimal glad, larynx, liver, lung, lymph, lymph node, lymphoblast, maxilla, mediastinum, mesentery, myometrium, nasopharynx, omentum, oral cavity, ovary, pancreas, parotid gland, peripheral nervous system, peritoneum, pleura, prostate, salivary gland, sigmoid colon, skin, small intestine, soft tissues, spleen, stomach, testis, thymus, thyroid gland, tongue, tonsil, trachea, uterus, vulva, white blood cells.
[0511] Tumors to be treated may be nervous or non-nervous system tumors. Nervous system tumors may originate either in the central or peripheral nervous system, e.g. glioma, medulloblastoma, meningioma, neurofibroma, ependymoma, Schwannoma, neurofibrosarcoma, astrocytoma and oligodendroglioma. Non-nervous system cancers / tumors may originate in any other non-nervous tissue; examples include melanoma, mesothelioma, lymphoma, myeloma, leukemia, Non-Hodgkin’s lymphoma (NHL), Hodgkin’s lymphoma, chronic myelogenous leukemia (CML), acute myeloid leukemia (AML), myelodysplastic syndrome (MDS), cutaneous T-cell lymphoma (CTCL), chronic lymphocytic leukemia (CLL), hepatoma, epidermoid carcinoma, prostate carcinoma, breast cancer, lung cancer, colon cancer, ovarian cancer, endometrial cancer, pancreatic cancer, thymic carcinoma, NSCLC, hematologic cancer and sarcoma.
[0512] In some embodiments, the cancer is breast cancer, lung cancer (e.g. small cell lung cancer), gastric cancer or endometrial cancer. In some embodiments, the cancer is breast ductal carcinoma, small cell lung carcinoma, gastric carcinoma or endometrial carcinoma.
[0513] In some embodiments, the cancer is a hematologic cancer. In some embodiments, the cancer is a myeloid hematologic cancer, lymphoma, Hodgkin’s lymphoma, non-Hodgkin’s lymphoma, AIDS-related lymphoma, cutaneous T cell lymphoma, mycosis fungicides, primary central nervous system lymphoma, Sezary syndrome, Waldenstrom macroglobulinemia, leukemia, T cell leukemia, B cell leukemia, acute myeloid leukemia, chronic myeloid leukemia, chronic myelomonocytic leukemia, acute promyelocytic leukemia, chronic promyelocytic leukemia, acute lymphoblastic leukemia, chronic lymphoblastic leukemia, hairy cell leukemia, myeloma, multiple myeloma, myelodysplastic syndrome, or a myeloproliferative disorder.
[0514] In some embodiments, the cancer to be treated / prevented comprises cells expressing the target antigen for the antigen-binding molecule. In some embodiments, the cancer to be treated / prevented is a cancer which is positive for the target antigen for the antigen-binding molecule. In some embodiments, the cancer comprises cells that overexpress the target antigen for the antigen-binding molecule.
[0515] Overexpression can be determined by detection of a level of expression which is greater than the level of expression by equivalent non-cancerous cells / non-tumor tissue.
[0516] In some embodiments, the cancer to be treated / prevented is a cancer which is heterogenous for expression of the target antigen for the antigen-binding molecule. In some embodiments, the cancer to be treated / prevented comprises a population of cells heterogenous for expression of the target antigen for the antigen-binding molecule.
[0517] In some embodiments, the cancer to be treated / prevented comprises cells that do not express the target antigen for the antigen-binding molecule. In some embodiments, the cancer to be treated / prevented comprises cells that are negative for the target antigen for the antigen-binding molecule. In some embodiments, the cancer to be treated / prevented comprises cells expressing the target antigen for the antigen-binding molecule and cells that do not express the target antigen for the antigen-binding molecule. In some embodiments the cancer to be treated / prevented comprises cells which are positive for the target antigen for the antigen-binding molecule and cells which are negative for the target antigen for the antigen-binding molecule.
[0518] Expression may be determined by any suitable means. Expression may be gene expression or protein expression. Gene expression can be determined e.g. by detection of mRNA encoding the target antigen for the antigen-binding molecule, for example by quantitative real-time PCR (qRT-PCR). Protein expression can be determined e.g. by antibody-based methods, for example by western blot, immunohistochemistry, immunocytochemistry, flow cytometry, or ELISA.
[0519] In some embodiments the cancer is a cancer in which the target antigen for the antigen-binding molecule is pathologically-implicated. That is, in some embodiments the cancer is a cancer which is caused or exacerbated by the expression of the target antigen for the antigen-binding molecule, a cancer for which expression of the target antigen for the antigen-binding molecule is a risk factor and / or a cancer for which expression of the target antigen for the antigen-binding molecule is positively associated with onset, development, progression, severity or metastasis of the cancer. The cancer may be characterised by expression of the target antigen for the antigen-binding molecule, e.g. the cancer may comprise cells (e.g. cells of tumor tissue) expressing the target antigen for the antigen-binding molecule. Such cancers may be referred to as being positive for the target antigen for the antigen-binding molecule. A cancer which is ‘positive’ for the target antigen for the antigen-binding molecule may be a cancer comprising cells expressing the target antigen for the antigen-binding molecule (e.g. at the cell surface). A cancer which is ‘positive’ for the target antigen for the antigen-binding molecule may overexpress the target antigen for the antigen-binding molecule.
[0520] In some embodiments, the cancer to be treated / prevented comprises cells harboring a genetic variant (e.g. a mutation) which causes increased (gene and / or protein) expression and / or activity of the target antigen for the antigen-binding molecule, relative to comparable cells harboring a reference allele not comprising the genetic variant (e.g. a non-mutated, or ‘wildtype’ allele). The genetic variant may be or comprise insertion, deletion, substitution to, or larger-scale translocation / rearrangement of, the nucleotide sequence relative to the reference allele.
[0521] A mutation ‘resulting in’ increased expression of the target antigen for the antigen-binding molecule may be known or predicted to cause, or may be associated with, increased gene / protein expression of the target antigen for the antigen-binding molecule. Mutations resulting in increased expression and / or activity of the target antigen for the antigen-binding molecule may be referred to as ‘activating’ mutations.
[0522] A mutation which causes increased expression of the target antigen for the antigen-binding molecule may result in gene or protein expression of the target antigen for the antigen-binding molecule which is not expressed by, and / or not encoded by genomic nucleic acid of, an equivalent cell not harboring the mutation. That is, the expression of the target antigen for the antigen-binding molecule may be a result of the mutation, and thus ‘increased expression’ may be from no expression.
[0523] A mutation which causes increased expression of the target antigen for the antigen-binding molecule may result in increased gene or protein expression of the target antigen for the antigen-binding molecule which is expressed by, and / or which is encoded by genomic nucleic acid of, an equivalent cell not comprising the mutation. By way of illustration, a cell may comprise mutation(s) resulting in an increase in the level of transcription of nucleic acid encoding the target antigen for the antigen-binding molecule relative to the level of transcription of the relevant nucleic acid(s) by an equivalent cell not comprising the mutation(s).
[0524] In some embodiments, a mutation which causes increased expression of the target antigen for the antigen-binding molecule may cause an increase in gene expression of the gene encoding the relevant antigen relative to an equivalent cell not comprising the mutation. In some embodiments, a mutation which causes increased expression of the target antigen for the antigen-binding molecule may cause an increase in protein expression of the relevant protein relative to an equivalent cell not comprising the mutation.
[0525] In some embodiments, a mutation which causes increased expression of the target antigen for the antigen-binding molecule may cause an increase in the level of the target antigen for the antigen-binding molecule on or at the cell surface of a cell comprising the mutation, relative to an equivalent cell not comprising the mutation. Cells having increased expression of the target antigen for the antigen-binding molecule relative to the level of expression of the target antigen for the antigen-binding molecule by a reference cell (e.g. as a result of mutation) may be described as ‘overexpressing’ the target antigen for the antigen-binding molecule, or having ‘upregulated expression’ of the target antigen for the antigen-binding molecule. For example, a cancer comprising cells harboring a mutation resulting in increased expression of the target antigen for the antigen-binding molecule relative to equivalent cells lacking the mutation may be described as a cancer comprising cells displaying overexpression / upregulated expression of the target antigen for the antigen-binding molecule. In some embodiments, the reference cell lacking the mutation may be a non-cancerous cell (e.g. of equivalent cell type) or a cancerous cell (e.g. of equivalent cancer type).
[0526] A mutation which causes increased activity of the target antigen for the antigen-binding molecule may result in an increase in the target antigen for the antigen-binding molecule-mediated activity relative to the level of the target antigen for the antigen-binding molecule-mediated activity by an equivalent cell not comprising the mutation.
[0527] In some embodiments, a cancer to be treated / prevented in accordance with the present disclosure may be characterised by an increase in the expression and / or activity of the target antigen for the antigenbinding molecule ( / .e. gene and / or protein expression) in an organ / tissue / subject affected by the disease / condition e.g. as compared to normal organ / tissue / subject ( / .e. in the absence of the disease / condition). In some embodiments, cells and / or a tumor of a cancer to be treated / prevented may be characterised by an increase in the expression and / or activity of the target antigen for the antigenbinding molecule, e.g. as compared to the level of expression and / or activity observed in equivalent non- cancerous cells / non-tumor tissue.
[0528] In some embodiments, the cancer may be a relapsed cancer. As used herein, a ‘relapsed’ cancer refers to a cancer which responded to a treatment (e.g. a first line therapy for the cancer), but which has subsequently re-emerged / progressed, e.g. after a period of remission. For example, a relapsed cancer may be a cancer whose growth / progression was inhibited by a treatment (e.g. a first line therapy for the cancer), and which has subsequently grown / progressed. A cancer that is relapsed with respect to given treatment may be described as having acquired resistance to such treatment.
[0529] In some embodiments, the cancer may be a refractory cancer. As used herein, a ‘refractory’ cancer refers to a cancer which has not responded to a treatment (e.g. a first line therapy for the cancer). For example, a refractory cancer may be a cancer whose growth / progression was not inhibited by a treatment (e.g. a first line therapy for the cancer). In some embodiments a refractory cancer may be a cancer for which a subject receiving treatment for the cancer did not display a partial or complete response to the treatment. A cancer that is refractory with respect to given treatment may be described as having intrinsic resistance to such treatment. In some embodiments, the cancer is a cancer that is relapsed or refractory with respect to treatment with a DNA damage response (DDR) inhibitor. In some embodiments, the cancer is refractory with respect to treatment with a DDR inhibitor. In some embodiments, the cancer is relapsed with respect to treatment with a DDR inhibitor. In some embodiments, the cancer has intrinsic resistance to treatment with a DDR inhibitor. In some embodiments, the cancer has acquired resistance to treatment with a DDR inhibitor. In accordance with such embodiments, the DDR inhibitor may have been administered in the form of an antigen-binding molecule comprising a payload moiety comprising or consisting of the DDR inhibitor, or may have been administered in unconjugated form.
[0530] Herein, where a cancer is described as being relapsed / refractory / resistant, etc. with respect to a given intervention, it may be simply described as being ‘relapsed / refractory / resistant to’ the relevant intervention.
[0531] DDR inhibitors and their use for the treatment of cancers is described e.g. in Cheng et al., Eur J Med Chem. (2022) 230:114109, Wang et al., Front Immunol. (2022) 13:854730 and Choi and Lee, Int J Mol Sci. (2022) 23(3):1701 , all of which are hereby incorporated by reference in their entirety. In some embodiments, a DDR inhibitor according to the present disclosure is selected from: a PARP inhibitor (e.g. olaparib, rucaparib, niraparib, talazoparib, veliparib, pamiparib, simmiparib, senaparib, SC-10914, 2X- 121 , AMXI-5001 , JPI-547, AZD5305, IDX-1197, TQB-3823, HWH-340, AsiDNA, STP-1002, RBN-2397, fluzoparib, NMS-03305293, AZD9574), an ATM inhibitor (e.g. CP-466722, KU-55933, KU-60019, KU- 59403, AZ31 , AZ32, AZD0156, AZD1390), an ATR inhibitor (e.g. M6620 (berzosertib), M4344 (VX-803), AZD6738 (ceralasertib), BAY1895344 (elimusertib), RP3500 (camonsertib), ATRN119, ART380, IMP9064, HRS2398, M1774, IMP9064, SC0245, LF0397, NU6027), a WEE1 inhibitor (e.g. adavosertib, Debio 0123, PD0166285, PD0407824, AZD1775 ZN-c3 (azenosertib), IMP7068, SY4835, SCO191 , IMP7068), a CHK1 / 2 inhibitor (e.g. CBP-501 , prexasertib, MK-8776, GDC-0575, SRA-737, PF-00477736, AZD7762, LY2603618 (rabusertib), LY2880070, XL884, BEBT260, CC-115, MU380, NU7441 , KU-5778), a DNA-PK inhibitor (e.g. CC-115, LY-3023414, AsiDNA, M3814 (nedisertib, peposertib), M9831 (VX-984), BR-101801 , XRD-0394, SL901 , XZP-6877, IMP-11 , ZL-2201 , BR-2006, AZD7648, NU7441), a PLK1 inhibitor (e.g. BI-6727 (volasertib), PCM-075 (onvansertib), CYC140 (plogosertib)), a PolO inhibitor (e.g. ART4215, ART6043, novobiocin, RP-6685, RP-3467), a RAD51 inhibitor (e.g. CYT0851), a USP inhibitor (e.g. an inhibitor of USP11 , USP7, USP4, USP37, USP39, USP45, USP24 and / or USP1 ; e.g. KSQ-4279), a PKMYT1 inhibitor (e.g. RP6306), or an Aurora-A inhibitor (e.g. alisertib, WJ05129 (JS112), JAB-2485).
[0532] In some embodiments, the cancer is a cancer that is relapsed or refractory with respect to treatment with a DNA topoisomerase I (TOP1) inhibitor. In some embodiments, the cancer is refractory with respect to treatment with a TOP1 inhibitor. In some embodiments, the cancer is relapsed with respect to treatment with a TOP1 inhibitor. In some embodiments, the cancer has intrinsic resistance to treatment with a TOP1 inhibitor. In some embodiments, the cancer has acquired resistance to treatment with a TOP1 inhibitor. In accordance with such embodiments, the TOP1 inhibitor may have been administered in the form of an antigen-binding molecule comprising a payload moiety comprising or consisting of the TOP1 inhibitor, or may have been administered in unconjugated form. Example 4 herein demonstrates that antigen-binding molecules comprising a DDRi inhibitor moiety and a TOP1 inhibitor moiety according to the present disclosure are useful to kill cancer cells that are resistant / insensitive to treatment with the same antibody conjugated only to a TOP1 inhibitor moiety. Example 11 herein demonstrates that antigen-binding molecules comprising a DDRi inhibitor moiety and a TOP1 inhibitor moiety according to the present disclosure are useful to inhibit tumour growth in a cellline derived mouse model of cancer resistant / insensitive to treatment with the same antibody conjugated only to a TOP1 inhibitor moiety.
[0533] Example 5 herein demonstrates that treatment with an antigen-binding molecule comprising a DDRi inhibitor moiety and a TOP1 inhibitor moiety according to the present disclosure achieves much more potent inhibition of tumor growth in a cell line-derived mouse model of breast ductal carcinoma, as compared to treatment with the same antibody conjugated only to a TOP1 inhibitor moiety.
[0534] DNA topoisomerase I inhibitors and their use for the treatment of cancers is described e.g. in Pommier, Chem Rev. (2009) 109(7): 2894-2902, Li et al., Am J Cancer Res. (2017) 7(12): 2350-2394 and Thomas and Pommier, Clin Cancer Res. (2019) 25(22): 6581-6589, all of which are hereby incorporated by reference in their entirety. In some embodiments, a TOP1 inhibitor according to the present disclosure is selected from: camptothecin, irinotecan, etirinotecan, SN-38, DX-8951f (extatecan mesylate), DXd(1), DXd(2), exatecan, FL118, topotecan, gimatecan, belotecan, deruxtecan, belotecan, rubitecan, lurtotecan, diflomotecan, karenitecan, silatecan, namitecan, elomotecan, DRF-1042, delimotecan, NSC606985, chimmitecan, ZBH-1205, Genz-644282, non-CPT1 , indotecan (LMP-400), indimitecan (LMP-776), LMP744, AZ14170132, SHR9265, Ed-04, KL610023, A1 .9, ZD06519, P1003, P1021 , VIP126 and ZBH- 01.
[0535] In some embodiments, the cancer to be treated / prevented in accordance with the present disclosure is a cancer that is: relapsed or refractory with respect to treatment with a DDR inhibitor (e.g. a DDR inhibitor as described herein), and relapsed or refractory with respect to treatment with a TOP1 inhibitor (e.g. a TOP1 inhibitor as described herein). In some embodiments, the cancer is: refractory with respect to treatment with a DDR inhibitor (e.g. a DDR inhibitor as described herein), and refractory with respect to treatment with a TOP1 inhibitor (e.g. a TOP1 inhibitor as described herein). In some embodiments, the cancer is: relapsed with respect to treatment with a DDR inhibitor (e.g. a DDR inhibitor as described herein), and relapsed with respect to treatment with a TOP1 inhibitor (e.g. a TOP1 inhibitor as described herein). In some embodiments, the cancer is: refractory with respect to treatment with a DDR inhibitor (e.g. a DDR inhibitor as described herein), and relapsed with respect to treatment with a TOP1 inhibitor (e.g. a TOP1 inhibitor as described herein). In some embodiments, the cancer is: relapsed with respect to treatment with a DDR inhibitor (e.g. a DDR inhibitor as described herein), and refractory with respect to treatment with a TOP1 inhibitor (e.g. a TOP1 inhibitor as described herein). In accordance with such embodiments, the TOP1 inhibitor and / or DDR inhibitor may have been administered in the form of an antigen-binding molecule comprising a payload moiety comprising or consisting of the TOP1 inhibitor / DDR inhibitor, or may have been administered in unconjugated form. Treatment of a cancer in accordance with the methods of the present disclosure achieves one or more of the following treatment effects: reduces the number of cancer cells in the subject, reduces the size of a cancerous tumor / lesion in the subject, inhibits (e.g. prevents or slows) growth of cancer cells in the subject, inhibits (e.g. prevents or slows) growth of a cancerous tumor / lesion in the subject, inhibits (e.g. prevents or slows) the development / progression of a cancer (e.g. to a later stage, or metastasis), reduces the severity of symptoms of a cancer in the subject, increases survival of the subject (e.g. progression free survival or overall survival), reduces a correlate of the number or activity of cancer cells in the subject, and / or reduces cancer burden in the subject.
[0536] Subjects may be evaluated in accordance with the Revised Criteria for Response Assessment: The Lugano Classification (described e.g. in Cheson et al., J Clin Oncol (2014) 32: 3059-3068, incorporated by reference hereinabove) in order to determine their response to treatment. In some embodiments, treatment of a subject in accordance with the methods of the present disclosure achieves one of the following: complete response, partial response, or stable disease.
[0537] Prevention may refer to prevention of development of a cancer, and / or prevention of worsening of a cancer, e.g. prevention of progression of a cancer, e.g. to a later stage (e.g. metastasis).
[0538] Antigen-binding molecules according to the present disclosure may be employed for the treatment / prevention of diseases / conditions other than cancers. Antibody-drug conjugates are useful for the treatment / prevention of diseases / conditions including infectious diseases, autoimmune diseases, neurological diseases, cardiovascular diseases, metabolic diseases, hematological diseases and fibrotic diseases; see e.g. Mike Ward, “Exploring the potential of ADCs beyond oncology”, Drug Target Review, published 6 August 2024.
[0539] In some embodiments, the disease / condition to be treated / prevented in accordance with the present disclosure is an infectious disease / condition, e.g. a disease / condition caused by infection with a pathogen (e.g. a disease / condition caused by bacterial, viral, fungal, or parasitic infection). In accordance with such aspects and embodiments, the target antigen of the target antigen-binding moiety may be an antigen of a pathogen as described herein. It will be appreciated that in aspects and embodiments wherein the disease / condition to be treated / prevented is a disease / condition caused by infection with a pathogen (e.g. a disease / condition caused by bacterial, viral, fungal, or parasitic infection), the target antigen of the target antigen-binding moiety of the antigen-binding molecule of the present disclosure may be an antigen of the relevant pathogen ( / .e. an antigen of the relevant bacterium, virus, fungus, or parasite).
[0540] For example, antigen-binding molecules according to the present disclosure comprising payload moieties having cytotoxic activity can be employed to kill / increase killing of the relevant pathogen / cells infected with the relevant pathogen. In some embodiments, an infectious disease / condition according to the present disclosure is a disease / condition caused by / associated with bacterial infection, e.g. infection with Bacillus spp., Bordetella pertussis, Clostridium spp., Corynebacterium spp., Vibrio chloerae, Staphylococcus spp., Streptococcus spp. Escherichia, Klebsiella, Proteus, Yersinia, Erwina, Salmonella, Listeria sp, Helicobacter pylori, mycobacteria (e.g. Mycobacterium tuberculosis) or Pseudomonas aeruginosa. For example, the bacterial infection may be sepsis or tuberculosis. In some embodiments, the infectious disease is a disease caused by / associated with a virus, e.g. influenza virus, SARSr-CoV, measles virus, hepatitis B virus (HBV), hepatitis C virus (HCV), human immunodeficiency virus (HIV), lymphocytic choriomeningitis virus (LCMV), Herpes simplex virus or human papilloma virus (HPV). In some embodiments, the infectious disease is a disease caused by / associated with fungal infection, e.g. infection with Alternaria sp, Aspergillus sp, Candida sp and Histoplasma sp. The fungal infection may be fungal sepsis or histoplasmosis. In some embodiments, the infectious disease is a disease caused by / associated with parasitic infection, e.g. infection with Plasmodium species (e.g. Plasmodium falciparum, Plasmodium yoeli, Plasmodium ovale, Plasmodium vivax, or Plasmodium chabaudi). In some embodiments, the disease / condition may be malaria, leishmaniasis or toxoplasmosis. In some embodiments, the disease / condition is a disease caused by / associated with bacterial infection or a disease caused by / associated with viral infection.
[0541] In some embodiments, the disease / condition to be treated / prevented in accordance with the present disclosure is an autoimmune disease / condition. In accordance with such aspects and embodiments, the target antigen of the target antigen-binding moiety may be an autoimmune disease-associated antigen. It will be appreciated that in aspects and embodiments wherein the disease / condition to be treated / prevented is an autoimmune disease, the target antigen of the target antigen-binding moiety of the antigen-binding molecule of the present disclosure may be an antigen associated with the relevant autoimmune disease / condition. For example, the target antigen may be an antigen expressed by autoreactive immune cells (e.g. autoreactive T cells or autoreactive B cells), an antigen of an inflammatory mediator that is implicated in the pathology of the relevant autoimmune disease / condition, or another antigen otherwise implicated in the pathology of the autoimmune disease / condition.
[0542] For example, antigen-binding molecules according to the present disclosure comprising payload moieties having cytotoxic activity can be employed to kill / increase killing of autoreactive immune cells and / or other inflammatory mediators that are implicated in the pathology of the relevant autoimmune disease / condition.
[0543] In some embodiments, the autoimmune disease / condition is selected from: diabetes mellitus type 1 , celiac disease, Graves' disease, inflammatory bowel disease, multiple sclerosis, psoriasis, arthritis (e.g. rheumatoid arthritis), and systemic lupus erythematosus. In some embodiments, the autoimmune disease / condition is rheumatoid arthritis, systemic lupus erythematosus, multiple sclerosis or diabetes mellitus type 1 . In some embodiments, the disease / condition to be treated / prevented in accordance with the present disclosure is a neurological disease / condition. In accordance with such aspects and embodiments, the target antigen of the target antigen-binding moiety may be a neurological disease-associated antigen. It will be appreciated that in aspects and embodiments wherein the disease / condition to be treated / prevented is a neurological disease / condition, the target antigen of the target antigen-binding moiety of the antigen-binding molecule of the present disclosure may be an antigen associated with the relevant neurological disease / condition. For example, the target antigen may be an antigen expressed by pathological effectors of the relevant neurological disease / condition, or an antigen otherwise implicated in the pathology of the neurological disease / condition.
[0544] For example, antigen-binding molecules according to the present disclosure comprising payload moieties having cytotoxic activity can be employed to kill / increase killing of pathological effectors of the relevant neurological disease / condition (e.g. immune cells). For example, antigen-binding molecules according to the present disclosure comprising appropriate payload moieties may be employed to increase degradation of plaques (e.g. amyloid beta plaques) or protein aggregates (e.g. tau protein aggregates) that are implicated in the pathology of the disease / condition.
[0545] In some embodiments, the neurological disease / condition is selected from: Alzheimer's disease, multiple sclerosis, Parkinson's disease, Huntington’s disease, amyotrophic lateral sclerosis, and hippocampal atrophy. In some embodiments, the neurological disease / condition is Alzheimer's disease or multiple sclerosis.
[0546] In some embodiments, the disease / condition to be treated / prevented in accordance with the present disclosure is a cardiovascular disease / condition. In accordance with such aspects and embodiments, the target antigen of the target antigen-binding moiety may be a cardiovascular disease-associated antigen. It will be appreciated that in aspects and embodiments wherein the disease / condition to be treated / prevented is a cardiovascular disease / condition, the target antigen of the target antigen-binding moiety of the antigen-binding molecule of the present disclosure may be an antigen associated with the relevant cardiovascular disease / condition. For example, the target antigen may be an antigen expressed by pathological effectors of the relevant cardiovascular disease / condition, or an antigen otherwise implicated in the pathology of the cardiovascular disease / condition.
[0547] For example, antigen-binding molecules according to the present disclosure comprising payload moieties having cytotoxic activity can be employed to kill / increase killing of pathological effectors of cardiovascular remodelling / fibrosis. For example, antigen-binding molecules according to the present disclosure comprising appropriate payload moieties may be employed to stabilise atherosclerotic plaques.
[0548] In some embodiments, the cardiovascular disease / condition is selected from: atherosclerosis, heart failure (e.g. heart failure with preserved ejection fraction (HFpEF) or heart failure with reduced ejection fraction (HFrEF)), varicose veins, cerebral infarcts, hypertrophic cardiomyopathy (HCM), dilated cardiomyopathy (DCM), fibrosis of the atrium, atrial fibrillation, fibrosis of the ventricle, ventricular fibrillation, myocardial fibrosis, interstitial fibrosis, replacement fibrosis, Brugada syndrome, myocarditis, endomyocardial fibrosis, myocardial infarction, fibrotic vascular disease, hypertension, hypertensive heart disease, arrhythmogenic right ventricular cardiomyopathy (ARVC), arterial stiffness, chronic pulmonary hypertension and AIDS-associated pulmonary hypertension. In some embodiments, the cardiovascular disease / condition is atherosclerosis or heart failure.
[0549] In some embodiments, the disease / condition to be treated / prevented in accordance with the present disclosure is a metabolic disease / condition. In accordance with such aspects and embodiments, the target antigen of the target antigen-binding moiety may be a metabolic disease-associated antigen. It will be appreciated that in aspects and embodiments wherein the disease / condition to be treated / prevented is a metabolic disease / condition, the target antigen of the target antigen-binding moiety of the antigenbinding molecule of the present disclosure may be an antigen associated with the relevant metabolic disease / condition. For example, the target antigen may be an antigen expressed by pathological effectors of the relevant metabolic disease / condition, or an antigen otherwise implicated in the pathology of the metabolic disease / condition.
[0550] For example, antigen-binding molecules according to the present disclosure comprising payload moieties having cytotoxic activity can be employed to kill / increase killing of pathological effectors of metabolic disease (e.g. inflammatory immune cells) or to increase degradation of adipose cells / tissue. For example, antigen-binding molecules according to the present disclosure comprising appropriate payload moieties may be employed to modulate insulin resistance and / or activate metabolic pathways.
[0551] In some embodiments, the metabolic disease / condition is selected from: diabetes mellitus, obesity, prediabetes, metabolic syndrome, pregnancy-associated hyperglycemia ( / .e. gestational diabetes), hyperglycaemia, amyloidosis, hypertension, and hypercholesterolemia. In some embodiments, the metabolic disease / condition is diabetes mellitus or obesity.
[0552] In some embodiments, the disease / condition to be treated / prevented in accordance with the present disclosure is a hematologic disease / condition. In accordance with such aspects and embodiments, the target antigen of the target antigen-binding moiety may be a hematologic disease-associated antigen. It will be appreciated that in aspects and embodiments wherein the disease / condition to be treated / prevented is a hematologic disease / condition, the target antigen of the target antigen-binding moiety of the antigen-binding molecule of the present disclosure may be an antigen associated with the relevant hematologic disease / condition. For example, the target antigen may be an antigen expressed by pathological effectors of the relevant hematologic disease / condition, or an antigen otherwise implicated in the pathology of the hematologic disease / condition.
[0553] For example, antigen-binding molecules according to the present disclosure comprising appropriate payload moieties may be employed to deliver clotting factors ( / .e. for the treatment of bleeding disorders) or erythropoiesis-stimulating agents ( / .e. for the treatment of anemias). In some embodiments, the hematologic disease / condition is selected from: a bleeding disorder, (e.g. hemophilia or von Willebrand disease) or an anemia (e.g. a nutritional, hemolytic, or aplastic anemia). In some embodiments, the hematologic disease / condition is hemophilia or an anemia.
[0554] In some embodiments, the disease / condition to be treated / prevented in accordance with the present disclosure is a disease / condition characterised by fibrosis ( / .e. a fibrotic disease / condition). In accordance with such aspects and embodiments, the target antigen of the target antigen-binding moiety may be a fibrotic disease-associated antigen. It will be appreciated that in aspects and embodiments wherein the disease / condition to be treated / prevented is a fibrotic disease / condition, the target antigen of the target antigen-binding moiety of the antigen-binding molecule of the present disclosure may be an antigen associated with the relevant fibrotic disease / condition. For example, the target antigen may be an antigen expressed by pathological effectors of the relevant fibrotic disease / condition, or an antigen otherwise implicated in the pathology of the fibrotic disease / condition.
[0555] For example, antigen-binding molecules according to the present disclosure comprising payload moieties having cytotoxic activity can be employed to kill / increase killing of pathological effectors of fibrosis (e.g. myofibroblasts). For example, antigen-binding molecules according to the present disclosure comprising appropriate payload moieties may be employed to increase degradation of extracellular matrix.
[0556] In some embodiments, a disease / condition characterised by fibrosis is selected from: pulmonary fibrosis (e.g. idiopathic pulmonary fibrosis), asthma, cystic fibrosis, chronic obstructive pulmonary disease (COPD), liver fibrosis, chronic liver disease, alcoholic liver disease (ALD), non-alcoholic fatty liver disease (NAFLD), non-alcoholic steatohepatitis (NASH), liver cirrhosis, primary biliary cirrhosis (PBC), progressive massive fibrosis, cardiovascular fibrosis, hypertrophic cardiomyopathy (HCM), dilated cardiomyopathy (DCM), fibrosis of the atrium, atrial fibrillation, fibrosis of the ventricle, ventricular fibrillation, myocardial fibrosis, systemic sclerosis, scleroderma, kidney fibrosis, chronic kidney disease (CKD), Alport's syndrome, diabetic nephropathy, chronic glomerulonephritis, eye fibrosis, Grave's opthalmopathy, epiretinal fibrosis, retinal fibrosis, subretinal fibrosis, diabetic retinopathy, glaucoma, and arthritis. In some embodiments, the disease / condition characterised by fibrosis is pulmonary fibrosis or liver fibrosis.
[0557] In some embodiments, administration of an antigen-binding molecule / composition according to the present disclosure may be associated with one or more of: inhibition of the development / progression of the cancer, a delay to / prevention of onset of the cancer, a reduction in / delay to / prevention of tumor growth, a reduction in / delay to / prevention of tissue invasion, a reduction in / delay to / prevention of metastasis, a reduction in the severity of one or more symptoms of the cancer, a reduction in the number of cancer cells, a reduction in the cancer burden, a reduction in tumor size / volume, and / or an increase in survival of subjects having the cancer (e.g. progression free survival or overall survival).
[0558] In accordance with various aspects of the present disclosure, a method of treating and / or preventing a cancer according to the present disclosure may comprise inhibiting the growth of a tumor, reducing the size / volume of a tumor and / or increasing the survival of a subject having the cancer. In accordance with various aspects of the present disclosure, methods are provided which are for, or which comprise (e.g. in the context of treatment / prevention of a cancer, e.g. a cancer described herein), one or more of the following: binding to cells expressing the target antigen for the antigen-binding molecule; inhibiting the proliferation of cells expressing the target antigen for the antigen-binding molecule; killing cells expressing the target antigen for the antigen-binding molecule; inhibiting proliferation and / or increasing killing of cells (e.g. cells that do not express the target antigen) in proximity to a cell expressing the target antigen for the antigen-binding molecule; inhibiting tumor growth and / or reducing tumor size / volume, e.g. of a cancer expressing the target antigen for the antigen-binding molecule; and / or increasing the survival of subjects having a cancer, e.g. a cancer expressing the target antigen for the antigen-binding molecule.
[0559] Also provided are antigen-binding molecules and compositions according to the present disclosure for use in such methods, and the use of antigen-binding molecules and compositions according to the present disclosure in manufacture of compositions (e.g. medicaments) for use in such methods. It will be appreciated that the methods typically comprise administering an antigen-binding molecule according to the present disclosure to a subject.
[0560] Similarly, one or more of the following may be observed in a subject following therapeutic or prophylactic intervention in accordance with the present disclosure (e.g. compared to the level / number / proportion etc. prior to intervention): inhibition of proliferation of cells expressing the target antigen for the antigen-binding molecule; killing of cells expressing the target antigen for the antigen-binding molecule; inhibition of proliferation and / or increased killing of cells (e.g. cells that do not express the target antigen) in proximity to a cell expressing the target antigen for the antigen-binding molecule; inhibition of tumor growth and / or reduction of tumor size / volume, e.g. of a cancer expressing the target antigen for the antigen-binding molecule; and / or increased survival of a subject having a cancer, e.g. a cancer expressing the target antigen for the antigen-binding molecule.
[0561] In some embodiments, therapeutic / prophylactic intervention in accordance with the present disclosure may be described as being ‘associated with’ one or more of the effects described in the preceding paragraph. The skilled person is readily able to evaluate such properties using techniques that are routinely practiced in the art.
[0562] Administration of the antigen-binding molecules and compositions of the present disclosure is preferably in a ‘therapeutically-effective’ or ‘prophylactically-effective’ amount, this being sufficient to show therapeutic or prophylactic benefit to the subject. The actual amount administered, and rate and timecourse of administration, will depend on the nature and severity of the disease / condition and the particular article administered. Prescription of treatment, e.g. decisions on dosage etc., is within the responsibility of general practitioners and other medical doctors, and typically takes account of the disease / disorder to be treated, the condition of the individual subject, the site of delivery, the method of administration and other factors known to practitioners. Examples of the techniques and protocols mentioned above can be found in Remington’s ‘The Science and Practice of Pharmacy’ (Ed. A. Adejare), 23rdEdition (2020), Academic Press.
[0563] Administration of the antigen-binding molecules and compositions of the present disclosure may be e.g. parenteral, systemic, topical, intracavitary, intravascular, intravenous, intra-arterial, intramuscular, intrathecal, intraocular, intraconjunctival, intratumoral, subcutaneous, intradermal, oral or transdermal. Administration may be by injection, infusion or ingestion.
[0564] In some aspects and embodiments, articles of the present disclosure may be administered to a tissue / organ of interest (e.g. a tissue / organ affected by the disease / condition affected by the condition (e.g. a tissue / organ in which symptoms of the disease / condition manifest). In some aspects and embodiments, articles of the present disclosure may be administered to the blood ( / .e. intravenous / intra- arterial administration) by injection or infusion (e.g. via cannula), or may be administered subcutaneously or orally. In some aspects and embodiments, articles of the present disclosure may be administered to a tumor.
[0565] In some embodiments, therapeutic or prophylactic intervention according to the present disclosure may further comprise administering another agent for the treatment / prevention of the relevant disease / condition. Administration of antigen-binding molecules and compositions described herein may be alone or in combination with other treatments, either simultaneously or sequentially dependent upon the condition to be treated. Simultaneous administration refers to administration with another therapeutic agent together, for example as a pharmaceutical composition containing both agents (combined preparation), or immediately after each other (e.g. within 1 , 4, 6, 8 or 12 hours) and optionally via the same route of administration (e.g. to the same tissue, artery, vein or other blood vessel). Sequential administration refers to administration of one agent followed after a given time interval by separate administration of another agent. It is not required that the two agents are administered by the same route, although this is the case in some embodiments. The time interval may be any time interval.
[0566] Multiple doses of the antigen-binding molecules and compositions may be provided. Multiple doses may be separated by a predetermined time interval, which may be selected to be one of 1 , 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 , 22, 23, 24, 25, 26, 27, 28, 29, 30, or 31 days, or 1 , 2, 3, 4, 5, or 6 months. By way of example, doses may be given once every 7, 14, 21 or 28 days (plus or minus 3, 2, or 1 days).
[0567] The subject in accordance with aspects described herein may be any animal or human. The subject is preferably mammalian, more preferably human. The subject may be a non-human mammal, but is more preferably human. The subject may be male or female. The subject may be a patient. A subject may have been diagnosed with a disease or condition requiring treatment (e.g. a cancer, e.g. a cancer described herein), may be suspected of having such a disease / condition, or may be at risk of developing / contracting such a disease / condition.
[0568] In some embodiments, the subject to be treated according to a therapeutic or prophylactic method of the present disclosure herein is a subject having, or at risk of developing, a cancer, e.g. a cancer described herein. In embodiments according to the present disclosure, a subject may be selected for treatment according to the methods based on characterisation for certain markers of such disease / condition.
[0569] In some embodiments, a patient may be selected for treatment described herein based on the detection of a cancer ex pressing / ove rex pressing the target antigen for the antigen-binding molecule, e.g. in a sample obtained from the subject (e.g. a biopsy, e.g. of a tumor).
[0570] Kits
[0571] The present disclosure also provides kits of parts. A kit according to the present disclosure may comprise components for performing a method described herein, in whole or in part.
[0572] The kit may have at least one container having a predetermined quantity of an antigen-binding molecule or composition described herein.
[0573] In some aspects of the present disclosure a kit of parts is provided. In some embodiments, the kit may comprise an antigen-binding molecule or composition described herein, and which may be provided in a predetermined quantity.
[0574] The kit may provide an antigen-binding molecule or composition described herein together with instructions for administration to a patient in order to treat a specified disease / condition (e.g. a disease / condition described herein, e.g. a cancer).
[0575] The kit may provide an antigen-binding moiety according to the disclosure, and a linker-payload moiety according to the present disclosure. The kit may further comprise reagents for conjugating the antigenbinding moiety and the linker-payload moiety.
[0576] The kit may further comprise reagents, buffers and / or standards required for execution of a method according to the present disclosure. Kits according to the present disclosure may include instructions for use, e.g. in the form of an instruction booklet or leaflet. The instructions may include a protocol for performing any one or more of the methods described herein. Linker-payload molecule
[0577] The present disclosure provides a linker-payload molecule comprising at least a first payload and at least a second payload for conjugation to an antigen-binding moiety, wherein the linker for conjugation to the antibody comprises a moiety derived from a compound of the second aspect.
[0578] Thus, the linker-payload molecule comprises:
[0579] (a) an amino group for conjugation to an antigen-binding moiety;
[0580] (b) at least one first payload comprising moiety clicked to a first click group;
[0581] (c) at least one second payload comprising moiety clicked to a second click group; (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0582] In some embodiments, the linker-payload molecule comprising one of the following groups:
[0583]
[0584] Modified antigen-binding molecules
[0585] The present disclosure also provides a modified antigen-binding molecule comprising a moiety derived from a compound of the second aspect.
[0586] Thus, the modified antigen-binding moiety comprises:
[0587] (a) an amino group conjugated to an antigen-binding moiety;
[0588] (b) at least one first click group for connecting a first payload comprising moiety; (c) at least one second click group for connection of a second payload comprising moiety;
[0589] (d) the branching group: wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
[0590] In some embodiments, the modified antigen-binding molecule comprises one of the following groups:
[0591] Sequence identity As used herein, ‘sequence identity’ refers to the percent of nucleotides / amino acid residues in a subject sequence that are identical to nucleotides / amino acid residues in a reference sequence, after aligning the sequences and, if necessary, introducing gaps, to achieve the maximum percent sequence identity between the sequences. Pairwise and multiple sequence alignment for the purposes of determining percent sequence identity between two or more amino acid or nucleic acid sequences can be achieved in various ways known to a person of skill in the art, for instance, using publicly available computer software such as ClustalOmega (Soding, J. 2005, Bioinformatics 21 , 951-960), T-coffee (Notredame et al. 2000, J. Mol. Biol. (2000) 302, 205-217), Kalign (Lassmann and Sonnhammer 2005, BMC Bioinformatics, 6(298)) and MAFFT (Katoh and Standley 2013, Molecular Biology and Evolution, 30(4) 772-780) software. When using such software, the default parameters, e.g. for gap penalty and extension penalty, are preferably used.
[0592] Sequences
[0593] ***
[0594] The present disclosure includes the combination of the aspects and preferred features described except where such a combination is clearly impermissible or expressly avoided.
[0595] The section headings used herein are for organizational purposes only and are not to be construed as limiting the subject matter described.
[0596] Aspects and embodiments of the present disclosure will now be illustrated, by way of example, with reference to the accompanying figures. Further aspects and embodiments will be apparent to those skilled in the art. All documents mentioned in this text are incorporated herein by reference.
[0597] Throughout this specification, including the claims which follow, unless the context requires otherwise, the word ‘comprise,’ and variations such as ‘comprises’ and ‘comprising,’ will be understood to imply the inclusion of a stated integer or step or group of integers or steps but not the exclusion of any other integer or step or group of integers or steps.
[0598] It must be noted that, as used in the specification and the appended claims, the singular forms ‘a’, ‘an’, and ‘the’ include plural referents unless the context clearly dictates otherwise. Ranges may be expressed herein as from ‘about’ one particular value, and / or to ‘about’ another particular value. When such a range is expressed, another embodiment includes from the one particular value and / or to the other particular value. Similarly, when values are expressed as approximations, by the use of the antecedent ‘about’, it will be understood that the particular value forms another embodiment.
[0599] Where a nucleic acid sequence is disclosed or referred to herein, the reverse complement thereof is also expressly contemplated.
[0600] Methods described herein may preferably be performed in vitro. The term ‘in vitro’ is intended to encompass procedures performed with cells in culture whereas the term ‘in vivo’ is intended to encompass procedures with / on intact multi-cellular organisms.
[0601] Values may be expressed herein as ‘about’ a particular value. Similarly, ranges may be expressed herein as from ‘about’ a particular value, and / or to ‘about’ another particular value. The term ‘about’ in relation to a numerical value is optional, and means for example + / - 10 %. By way of illustration, reference e.g. to ‘about 10 %’ is to be construed as 9 % to 11 %. In instances herein where ‘about’ is recited, the value it precedes is also specifically contemplated. By way of illustration, reference e.g. to ‘about 10 %’ also specifically contemplates 10 %.
[0602] Brief Description of the Figures
[0603] Embodiments and experiments illustrating the principles of the invention will now be discussed with reference to the accompanying figures.
[0604] Figure 1A shows % inhibition for a TOP1 inhibitor and an ATR inhibitor alone and in combination in HCT- 116 cells.
[0605] Figure 1B shows % inhibition for a TOP1 inhibitor and a CHK1 inhibitor alone and in combination in HCT- 116 cells.
[0606] Figure 1C shows % inhibition for a TOP1 inhibitor and an ATR inhibitor alone and in combination in HEC- 1 B cells.
[0607] Figure 1D shows % inhibition for a TOP1 inhibitor and a CHK1 inhibitor alone and in combination in HEC- 1 B cells.
[0608] Figure 2 shows % cell death following treatment in vitro of cells of the indicated cancer cell lines for 7 days with trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), Trastuzumab deruxtecan (T-DXd) or isotype-matched control antibody conjugated to exatecan (Isotype Control). Figure 3A shows tumor volume over time, for mice having a JIMT-1 cell line-derived xenograft model of breast ductal carcinoma, and treated with PBS (vehicle), trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)) or trastuzumab deruxtecan (T-DXd)).
[0609] Figure 3B shows bodyweight in grams (g) over time, for mice having a JIMT-1 cell line-derived xenograft model of breast ductal carcinoma, and treated with PBS (vehicle), trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)) or trastuzumab deruxtecan (T-DXd)
[0610] Figure 4A shows tumor volume over time, for mice having a human small cell lung carcinoma cell line- derived xenograft model of small cell lung carcinoma (cell line SHP77), and treated with PBS (vehicle) or an antibody targeting a tumor associated antigen expressed by cells of the human small cell lung carcinoma cell line, conjugated to both exatecan and berzosertib (TAA (Exa+Ber)).
[0611] Figure 4B shows bodyweight in grams (g) over time, for mice having a human small cell lung carcinoma cell line-derived xenograft model of small cell lung carcinoma (cell line SHP77), and treated with PBS (vehicle) or an antibody targeting a tumor associated antigen expressed by cells of the human small cell lung carcinoma cell line, conjugated to both exatecan and berzosertib (TAA (Exa+Ber)).
[0612] Figure 5A shows binding of trastuzumab (T (naked), trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), Trastuzumab deruxtecan (T-DXd), isotype-matched control antibody (Isotype (Naked)) or isotype-matched control antibody conjugated to exatecan (Isotype (Exa)) to live BT-474, NCI- N87, JIMT-1 , HEC-1-B or HCT116 cells, as determined by flow cytometry.
[0613] Figure 5B shows the mean fluorescence intensity (MFI) for trastuzumab (T (naked), trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), F trastuzumab deruxtecan (T-DXd), isotype- matched control antibody (Isotype (Naked)) or isotype-matched control antibody conjugated to exatecan (Isotype (Exa)) bound to live BT-474, NCI-N87, JIMT-1 , HEC-1-B or HCT116 cells, as determined by flow cytometry.
[0614] Figure 6A shows subcellular localization of trastuzumab conjugated to both exatecan and berzosertib (T- (Exa+Ber)) or trastuzumab deruxtecan (T-DXd) within HEC-1-B cells after incubation for Oh, 0.5h or 2h, as determined by immunofluorescence microscopy.
[0615] Figure 6B shows subcellular localization of trastuzumab conjugated to both exatecan and berzosertib (T- (Exa+Ber)) or trastuzumab deruxtecan (T-DXd) within NCI-N87 cells after incubation for Oh, 0.5h or 2h, as determined by immunofluorescence microscopy.
[0616] Figure 7A shows % cell death following treatment in vitro of HEC1-B cells for 3 days with trastuzumab (T (naked)), trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), trastuzumab deruxtecan (T-DXd) or isotype-matched control antibody conjugated to exatecan (Isotype Control), at a concentration of 333 nM.
[0617] Figure 7B shows % cell death following treatment in vitro of NCI-N87 cells for 3 days with trastuzumab (T (naked)), trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), trastuzumab deruxtecan (T-DXd) or isotype-matched control antibody conjugated to exatecan (Isotype Control), at a concentration of 333 nM.
[0618] Figure 7C shows % cell death following treatment in vitro of HCT-116 cells for 3 days with trastuzumab (T (naked)), trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), trastuzumab deruxtecan (T-DXd) or isotype-matched control antibody conjugated to exatecan (Isotype Control), at a concentration of 333 nM.
[0619] Figure 7D shows % cell death following treatment in vitro of BT474 cells for 3 days with trastuzumab (T (naked)), trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), trastuzumab deruxtecan (T-DXd) or isotype-matched control antibody conjugated to exatecan (Isotype Control), at a concentration of 333 nM.
[0620] Figure 7E shows % cell death following treatment in vitro of JIMT-1 cells for 3 days with trastuzumab (T (naked)), trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber trastuzumab deruxtecan (T-DXd) or isotype-matched control antibody conjugated to exatecan (Isotype Control), at a concentration of 333 nM. Figure 7F shows % cell death following treatment in vitro of HEC1-B cells for 3 days with trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), trastuzumab deruxtecan (T-DXd) or isotype- matched control antibody conjugated to exatecan (Isotype Control), at concentrations of the antigenbinding molecules providing equivalent 0.857 nM payload concentration.
[0621] Figure 7G shows % cell death following treatment in vitro of NCI-N87 cells for 3 days with trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), trastuzumab deruxtecan (T-DXd) or isotype- matched control antibody conjugated to exatecan (Isotype Control), at concentrations of the antigenbinding molecules providing equivalent 0.857 nM payload concentration.
[0622] Figure 7H shows % cell death following treatment in vitro of HCT-116 cells for 3 days with trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), trastuzumab deruxtecan (T-DXd) or isotype- matched control antibody conjugated to exatecan (Isotype Control), at concentrations of the antigenbinding molecules providing equivalent 0.857 nM payload concentration.
[0623] Figure 7I shows % cell death following treatment in vitro of BT474 cells for 3 days with trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), trastuzumab deruxtecan (T-DXd) or isotype- matched control antibody conjugated to exatecan (Isotype Control), at concentrations of the antigenbinding molecules providing equivalent 0.857 nM payload concentration.
[0624] Figure 7J shows % cell death following treatment in vitro of JIMT-1 cells for 3 days with trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)), trastuzumab deruxtecan (T-DXd) or isotype- matched control antibody conjugated to exatecan (Isotype Control), at concentrations of the antigenbinding molecules providing equivalent 0.857 nM payload concentration.
[0625] Figure 8A shows binding of anti-TAA antibody (TAA (naked)), anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)), anti-TAA antibody conjugated to exatecan only (TAA (Exa)), isotype-matched control antibody (Isotype (Naked)) or isotype-matched control antibody conjugated to exatecan (Isotype (Exa)) to live SHP-77 cells, as determined by flow cytometry.
[0626] Figure 8B shows the mean fluorescence intensity (MFI) for anti-TAA antibody (TAA (naked)), anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)), anti-TAA antibody conjugated to exatecan only (TAA (Exa)), isotype-matched control antibody (Isotype (Naked)) or isotype-matched control antibody conjugated to exatecan (Isotype (Exa)) bound to live SHP-77 cells, as determined by flow cytometry.
[0627] Figure 8C shows binding of anti-TAA antibody (TAA (naked)), anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)), anti-TAA antibody conjugated to exatecan only (TAA (Exa)), isotype-matched control antibody (Isotype (Naked)) or isotype-matched control antibody conjugated to exatecan (Isotype (Exa)) to live NCI-H82 cells, as determined by flow cytometry.
[0628] Figure 8D shows the mean fluorescence intensity (MFI) for anti-TAA antibody (TAA (naked)), anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)), anti-TAA antibody conjugated to exatecan only (TAA (Exa)), isotype-matched control antibody (Isotype (Naked)) or isotype-matched control antibody conjugated to exatecan (Isotype (Exa)) bound to live NCI-H82 cells, as determined by flow cytometry.
[0629] Figure 9A shows subcellular localization of anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)) or anti-TAA antibody conjugated to exatecan only (TAA (Exa)), within NCI- H82 cells after incubation for Oh, 0.5h or 2h, as determined by immunofluorescence microscopy. Figure 9B shows subcellular localization of anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)) or anti-TAA antibody conjugated to exatecan only (TAA (Exa)), within TAA overexpressing HEK293 cells after incubation for Oh, 0.5h or 2h, as determined by immunofluorescence microscopy.
[0630] Figure 10 shows % change in bodyweight over time following administration to mice of anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)) or anti-TAA antibody conjugated to exatecan only (TAA (Exa)), at 3 mg / kg bodyweight, 10 mg / kg bodyweight, 30 mg / kg bodyweight or 60 mg / kg bodyweight, or following administration of vehicle only (Vehicle).
[0631] Figure 11A shows the level of the indicated red blood cell indices and anaemic parameters in the blood of mice following administration of two doses of anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)) or anti-TAA antibody conjugated to exatecan only (TAA (Exa)), at 3 mg / kg bodyweight, 10 mg / kg bodyweight, 30 mg / kg bodyweight or 60 mg / kg bodyweight, or vehicle only (Vechicle).
[0632] Figure 11B shows the level of the indicated white blood cell indices and platelets in the blood of mice following administration of two doses of anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)) or anti-TAA antibody conjugated to exatecan only (TAA (Exa)), at 3 mg / kg bodyweight, 10 mg / kg bodyweight, 30 mg / kg bodyweight or 60 mg / kg bodyweight, or vehicle only (Vechicle).
[0633] Figure 12A shows the level of the indicated liver, kidney and pancreatic indices in the blood of mice following administration of two doses of anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)) or anti-TAA antibody conjugated to exatecan only (TAA (Exa)), at 3 mg / kg bodyweight, 10 mg / kg bodyweight, 30 mg / kg bodyweight or 60 mg / kg bodyweight, or vehicle only (Vechicle).
[0634] Figure 12B shows the level of the indicated electrolytes in the blood of mice following administration of two doses of anti-TAA antibody conjugated to both exatecan and berzosertib (TAA (Exa+Ber)) or anti- TAA antibody conjugated to exatecan only (TAA (Exa)), at 3 mg / kg bodyweight, 10 mg / kg bodyweight, 30 mg / kg bodyweight or 60 mg / kg bodyweight, or vehicle only (Vechicle).
[0635] Figure 13A shows the Loewe synergy score for exatecan and berzosertib (upper panel) and the % inhibition for exatecan and berzosertib alone and in combination (lower panel) in HEC1-B cells.
[0636] Figure 13B shows the Loewe synergy score for exatecan and berzosertib (upper panel) and the % inhibition for exatecan and berzosertib alone and in combination (lower panel) in HCT-116 cells.
[0637] Figure 14A shows the level of pATR, pCHK1 , pH2AX and CHK1 in JIMT-1 cells untreated or treated with 100 nM exatecan, 100 nM berzosertib, or 100 nM exatecan and 100 nM berzosertib in combination.
[0638] Figure 14B shows the level of pATR, pCHK1 , pH2AX and CHK1 in HCT-116 cells untreated or treated with 75 nM exatecan, 75 nM berzosertib, or 75 nM exatecan and 75 nM berzosertib in combination.
[0639] Figure 15A shows survival of Sprague-Dawley rats following administration of vehicle, exatecan (1 , 3, 10 or 30 mg / kg), berzosertib (35 mg / kg) or exatecan and berzosertib in combination (1 , 3, 10 or 30 mg / kg exatecan + 35 mg / kg berzosertib).
[0640] Figure 15B shows body weight change in Sprague-Dawley rats following administration of vehicle, exatecan (1 , 3, 10 or 30 mg / kg), berzosertib (35 mg / kg) or exatecan and berzosertib in combination (1 , 3, 10 or 30 mg / kg exatecan + 35 mg / kg berzosertib). Figure 16A shows results of hematology assessments in Sprague-Dawley rats following administration of vehicle, exatecan (1 , 3, 10 or 30 mg / kg), berzosertib (35 mg / kg) or exatecan and berzosertib in combination (1 , 3, 10 or 30 mg / kg exatecan + 35 mg / kg berzosertib).
[0641] Figure 16B shows results of clinical chemistry assessments in Sprague-Dawley rats following administration of vehicle, exatecan (1 , 3, 10 or 30 mg / kg), berzosertib (35 mg / kg) or exatecan and berzosertib in combination (1 , 3, 10 or 30 mg / kg exatecan + 35 mg / kg berzosertib).
[0642] Figure 17 shows tumour volume in a T-DXd resistant NCI-N87 CDX model following administration of vehicle, Trastuzumab deruxtecan (T-DXd) (3 mg / kg) or trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber) (3 mg / kg, 9 mg / kg).
[0643] Figure 18 shows antibody concentration in immunocompetent BALB / c (top panel) and immunocompromised NSG (bottom panel) mice following administration of 10 mg / kg pertuzumab conjugated to both exatecan and berzosertib (‘Conjugated Ab (dual payload ADC)’) or 10 mg / kg pertuzumab (‘Unconjugated (naked) Ab’).
[0644] Figure 19 shows % inhibition of HER2-negative MDA-MB-231 cells alone or co-cultured with HER2- positive NCI-N87 cells and exposed to varying concentrations of trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)) or Trastuzumab deruxtecan (T-DXd).
[0645] Figure 20 shows megakaryocyte uptake via macropinocytosis of trastuzumab conjugated to both exatecan and berzosertib (T-(Exa+Ber)) (100 ng / ml) or trastuzumab deruxtecan (T-DXd) (100 ng / ml).
[0646] Figure 21 shows % increase in hydrophobic interaction chromatography retention time (RT) for a single payload ADC and T-(Exa+Ber).
[0647] Figure 22 shows the stability of ADCs 5 and 6 in plasma over 7 days.
[0648] Figure 23 shows the efficacy of dual payload ADCs on NCI-N87 gastric cell line cells.
[0649] Figure 24 shows the efficacy of dual and single payload ADCs in killing NCI-N87 gastric cell line cells.
[0650] Figure 25 shows the efficacy of dual and single payload ADCs in killing NCI-N87 gastric cell line cells.
[0651] Figure 26 shows the in vivo anti-tumor efficacy of dual and single payload ADCs in a xenograft mouse model.
[0652] Figure 27 shows the in vivo efficacy of dual payload ADCs with berzosertib (ATRi) or prexasertib (CHK1i) in a mouse model.
[0653] Figure 28 shows the in vivo efficacy of dual payload ADCs with different target DAR ratios.
[0654] Figure 29A shows the weight change results in a primate study following treatment with a dual payload ADC.
[0655] Figure 29B shows the biochemistry and haemotology results in a primate study following treatment with a dual payload ADC.
[0656] Figure 30 shows the efficacy of dual payload ADCs with TMTHSI or DBCO moieties on NCI-N87 gastric cell lines.
[0657] Figure 31 shows the clearance of dual payload ADCs with TMTHSI or DBCO moieties compared to the unconjugated control antibody in immunocompetent mice.
[0658] Figure 32 shows efficacy of dual payload ADCs with different conjugations. Example 1 - In vitro combination of DDR inhibitors and TOP1 inhibitors
[0659] In order to further demonstrate the benefits of combining DDR inhibitors and TOP1 inhibitors, certain inhibitors were combined in a two-dimensional proliferation assay as follows.
[0660] Cell Lines
[0661] HCT-116
[0662] HEC-1 B
[0663] Test Compounds
[0664] Exatecan (MedChemExpress,#HY-13631)
[0665] Ceralasertib (MedChemExpress,#HY-19323)
[0666] Prexasertib (MedChemExpress,#HY-18174)
[0667] Controls
[0668] Vehicle control (0.25% DMSO)
[0669] Only Cells
[0670] Detecting Reagent
[0671] Cell Titre Gio 2.0, Promega #G9243
[0672] The cells were seeded in wells of a white 96-well plate at a density of 7,000 cells per well for HEC-1 B cells, and 3,000 cells per well for HCT-116 cells, with 150 pl of media in each well. For the single compound experiment, 25 pl of the test compound and 25 pl of media were added to the respective wells at varying concentrations. For the synergy experiment, 25 pl of compound 1 and 25 pl of another compound were added to the respective wells at different concentrations. The plates were then incubated for 3 days at 37°C with 5% CO2. Following incubation, 50 pl of the detection reagent was added per well and shaken at 600 rpm for 20 minutes. The resulting luminescence was measured using Perkin Elmer Victor Nivo, and percent inhibition was calculated using the following equation:
[0673] % lnhibition= 1 00-((LumTreatrnent / Lumvehicle)*1 00)
[0674] Synergy between the test compounds (Loewe synergy score) was then determined using the Synergy Finder tool at synergyfinder.fimm.fi. A Loewe synergy score of above 10 indicates synergy, between 10 and -10 indicates an additive effect, and below -10 indicates antagonism.
[0675] A: Exatecan and ceralasertib (an ATR inhibitor) in HCT-116 cells
[0676] Fig 1 A shows the % inhibition for exatecan and ceralasertib alone and in combination. The Loewe synergy score is shown in table 1 A below. The IC50 for exatecan alone was 0.626 nM, when combined with ceralasertib at 375 nM was 0.080 nM and when combined with ceralasertib at 750 nM was 0.044 nM. Table 1A
[0677] B: Exatecan and prexasertib (a CHK1 inhibitor) in HCT-116 cells
[0678] Fig 1 B shows the % inhibition for exatecan and prexasertib alone and in combination. The Loewe synergy score is shown in table 1 B below. The IC50 for exatecan alone was 0.626 nM, when combined with prexasertib at 50 nM was 0.166 nM and when combined with prexasertib at 100 nM was 0.158 nM. The IC50 for prexasertib alone was 61 .14 nM.
[0679] Table 1B
[0680] C: Exatecan and ceralasertib (an ATR inhibitor) in HEC-1-B cells
[0681] Fig 1 C shows the % inhibition for exatecan and ceralasertib alone and in combination. The Loewe synergy score is shown in table 1 C below. The IC50 for exatecan alone was 1 13.9 nM, when combined with ceralasertib at 0.37 pM was 19.01 nM and when combined with ceralasertib at 1 .1 pM was 3.719 nM. The IC50 for ceralasertib alone was 2.118 pM. Table 1C
[0682] D: Exatecan and prexasertib (a CHK1 inhibitor) in HEC-1 B cells
[0683] Fig 1 D shows the % inhibition for exatecan and prexasertib alone and in combination. The Loewe synergy score is shown in table 1 D below. The IC50 for exatecan alone was 1 13.9 nM, when combined with prexasertib at 1 .9 nM was 8.988 nM and when combined with prexasertib at 3.8 nM was 2.013 nM. The IC50 for prexasertib alone was 4.466 nM.
[0684] Table 1D
[0685] In further experiments an additional DDR inhibitor, berzosertib (an ATR inhibitor), was combined with TOP1 inhibitor exatecan, in a two-dimensional proliferation assay as follows.
[0686] Cell Lines
[0687] HEC-1-B (HTB-113) HCT-116 (CCL-247)
[0688] Test Compounds
[0689] Exatecan (MedChemExpress,#HY-13631)
[0690] Berzosertib (Selleckchem, #S7102)
[0691] Detection
[0692] CellTiter-Glo® 2.0D Cell Viability Assay (Promega, #G9243)
[0693] The cells were seeded in 96-well white opaque plates in 150 pl of media, and incubated at 37°C with 5% CO2 for 24 hours. HEC-1 B was seeded at 7000 cells / well and HCT-116 was seeded at 3000 cells / well The next day, 25 pl of exatecan, berzosertib, or exatecan and berzosertib were added to cells at varying concentrations and incubated for 3 days at 37°C with 5% CO2. Following incubation, 50 pl of CellTiter-Glo reagent was added to the plates and incubated for 25 mins with gentle shaking at 600 rpm. Cell viability was measured via Luminescence using Victor Nivo, PerkinElmer.
[0694] Background was subtracted using Luminescence values from wells having only media (without any cells). Percent inhibition was calculated using the formula 100- {(Lum of cells treated with drug / Lum of cells treated with buffer control)*100} (Lum= Luminescence). The LOEWE synergy score was calculated using the Synergy Finder tool at synergyfinder.fimm.fi.
[0695] The results are shown in Figure 13A and Figure 13B. A synergistic effect is observed across a range of exatecan and berzosertib concentrations.
[0696] To summarise, exatecan was tested with two clinical stage ATR inhibitors (berzosertib and ceralasertib) for in vitro synergy in TOP1 inhibitor-low sensitivity cell line HEC-1 B and TOP1 inhibitor-high sensitivity cell line HCT-116. Both berzosertib and ceralasertib show synergy with exatecan across a wide range of concentrations tested in the cell lines. The effects in HEC-1 B demonstrate the TOP1 inhibitor and DDR inhibitor combination can sensitize inherently -less sensitive cells to TOP1 inhibitor therapy.
[0697] General conditions
[0698] All chemicals, raw materials and solvents were purchased from commercial sources, unless indicated otherwise. All chemical reactions were run under ambient conditions, unless otherwise indicated. Flash column chromatography was performed with CombiFlash® NEXTGEN 100, and the column was purchased from Agela Technologies. Prep-HPLC purifications were carried out using AUNO LC-2000, and the column is of Phenomenex Luna C18, 250 x 100 mm, 10pm, 10nm.1H NMR spectra were recorded on a Bruker spectrometer (400 MHz).1H NMR chemical shifts are expressed in parts per million (5) downfield from tetramethylsilane (with the CDCh peak at 7.26 ppm used as a standard). Mass Spectrometric data were recorded on SHIMADZU LCMS-2020 (ESI-MS) and Agilent 1260\G6125B (ESIMS), and the column is of Kinetex® EVO C18 4.6x50mm, 5pm, Kinetex® EVO C18 2.1*30mm, 5pm, Shim-pack Scepter C18-120 3.0x33mm 3 pm and Poroshell 120 EC C18 2.7pm 3.0*30mm. Example 2 - Synthesis of Linker-Payload molecule-1 (LP-1) i) ( 1-(9H-fluoren-9-yl)-3-oxo-2, 7, 10, 13-tetraoxa-4-azapentadecan-15-oyl)-L-valyl-L-alanine (compound 11)
[0699] Compound 11 was synthesized using standard solid-phase Fmoc chemistry. a) Resin loading: CH2CI2 (200 mL) was added to 2-chlorotrity I chloride resin (6.0 mmol, 1 .00 equiv.), followed by the addition of Fmoc-Ala-OH (1 .0 equiv.) and DIPEA (6.0 equiv.), the mixture was agitated under N2 atmosphere at 25 °C for 2 h. Thereafter methanol (9.5 mL) was added to the resin and the agitation continued for 30 min. The resin was then filtered and washed with DMF (300 mL x 3). b) Deprotection: 20% piperidine in DMF (200 mL) was added to the resin and agitated under N2 atmosphere at 25 °C for 30 min. The resin was washed with DMF (200 mL x 5) and filtered to get the resin with reactive amine group. c) Coupling: A solution of HBTU (2.85 equiv.), and Fmoc-Val-OH (3.0 equiv.) in DMF (200 mL) was added to the resin followed by the addition of DIEPA (6.0 equiv.). The mixture was agitated under N2 atmosphere at 25 °C for 30 min. The resin was then washed with DMF (200 mL x 3). d) Repeat step b to deprotect Fmoc group. Treat the resulting resin with Fmoc-N-amido-PEG3-acid (2.0 equiv.), HATU (1.9 equiv.) and DIPEA (4.0 equiv.) in DMF. The mixture was agitated under N2 atmosphere at 25 °C for 30 min. The resulting resin was washed with DMF (200 mL x 3). e) Peptide cleavage and purification: The resin was washed with methanol (200 mL x 3) and dried under vacuum. The dried resin was treated with the cleavage buffer consisting of 20% HFIP in CH2CI2 and stirred for 30 min and filtered. Concentration of the filtrate under reduced pressure furnished the crude compound 11 (1 .71 g) which was taken forward without further purification. ii) (9H-fluoren-9-yl)methyl ((2S,5S)-1-((4-(hydroxymethyl)phenyl)amino)-5-isopropyl-2-methyl-1,4,7-trioxo- 9, 12, 15-trioxa-3,6-diazaheptadecan-17-yl)carbamate (Compound 13)
[0700] I3
[0701] To a solution of compound 11 (1.60 g, 2.67 mmol, 1.0 equiv.) in CH2CI2 (16.0 mL) was added compound I2 (657 mg, 5.34 mmol, 2.0 equiv.), and EEDQ (1.32 g, 5.34 mmol, 2.0 equiv.). The reaction mixture was stirred at 25 °C for 12 h. LCMS analysis showed the starting material 11 was consumed completely, and desired product mass was detected. The reaction mixture was added to 160 mL isopropyl ether, then centrifuged to afford the crude compound I3 (2.00 g) as a yellow oil. The crude product was used for the subsequent reaction without further purification. MS (ESI): [M+Na]+: 727.4. Hi) ( 9H-fluoren-9-yl)m ethyl ((2S, 5S)-5-isopropyl-2-m ethyl- 1-((4-((((4- nitrophenoxy)carbonyl)oxy)methyl)phenyl)amino)-1,4, 7-trioxo-9, 12, 15-trioxa-3,6-diazaheptadecan-17- yl)carbamate (Compound 15)
[0702] I5
[0703] To a solution of compound I3 (2.00 g, 2.6 mmol, 1 .0 equiv.), and compound I4 (1 .58 g, 5.2 mmol, 2.0 equiv.) in DMF (20 mL) was added DIEPA (671 mg, 5.20 mmol, 905 pL, 2.0 equiv.). The mixture was stirred at 25 °C for 2 h. LCMS analysis showed 31 % of desired product formation and 2% of the starting alcohol I3. The mixture was purified directly by prep-HPLC (TFA condition) and the solvent was removed to furnish compound I5 (680 mg, 765 pmol, 29.4% yield, 97.9% purity) as a yellow solid. MS (ESI): [M+Na]+: 870.4. iv) (9H-fluoren-9-yl)methyl ((2S,5S)-1-((4-((((( 1R,9S)-9-ethyl-5-fluoro-9-hydroxy-4-methyl-10, 13-dioxo- 2,3,9, 10, 13, 15-hexahydro-1H, 12H-benzo[de]pyrano[3',4':6, 7]indolizino[1,2-b]quinolin-1- yl)carbamoyl)oxy)methyl)phenyl)amino)-5-isopropyl-2-methyl- 1, 4, 7-trioxo-9, 12, 15-trioxa-3, 6- diazaheptadecan-17-yl)carbamate (compound 16)
[0704] To a solution of compound I5 (200 mg, 225 pmol, 1.0 equiv.), and Exatecan (119 mg, 225 pmol, 1.00 equiv.) in DMF (3.40 mL) was added HOBt (33.4 mg, 247 pmol, 1.1 equiv.) and DIPEA (58 mg, 450 pmol, 78.4 pL, 2.0 equiv.). The mixture was stirred at 25 °C for 2 h. LCMS analysis showed compound I5 was completely consumed and the desired product mass was identified. The mixture was purified directly by prep-HPLC (TFA condition) to afford compound I6 (180 mg, 148 pmol, 66% yield, 96.3% purity) as a yellow solid. MS (ESI): [M+H]+: 1167.7
[0705] To a solution of compound I6 (180 mg, 148 pmol, 1.0 equiv.) in DMF (1.26 mL) was added triethylamine (392 mg, 3.88 mmol, 0.54 mL, 26 equiv.). The mixture was stirred at 25 °C for 2 h. LCMS analysis showed compound I6 was consumed completely, and desired product mass was detected. Compound I7 (140 mg, crude) was obtained as a brown liquid and used directly for the next step. MS (ESI): [M+H]+: 945.4
[0706] LP-1
[0707] To a solution of compound I7 (140 mg, 148 pmol, 1.0 equiv.) in DMF (1.26 mL) was added triethylamine (392 mg, 3.9 mmol, 0.54 mL, 26.1 equiv.), and DBCO-OSu (59.6 mg, 148 pmol, 1 .0 equiv.). The mixture was stirred at 25 °C for 1 h. LC-MS showed compound I7 was consumed completely, and desired mass was detected. The reaction mixture was added to 18.0 mL of isopropyl ether, and the crude product was slowly precipitated out. Centrifuged to get the crude product and discarded the liquid supernatant. The residue was purified by prep-HPLC (TFA condition) to obtain LP-1 (61.0 mg, 47.5 pmol, 32.5% yield, 97.5% purity) as a yellow solid. MS (ESI): [M+Na]+: 1253.6;1H NMR (400 MHz, DMSO-cfc) 5 ppm 9.98 (s, 1 H), 8.36 (d, J = 6.80 Hz, 1 H), 8.04 - 8.06 (m, 1 H), 7.71 - 7.78 (m, 2 H), 7.64 - 7.66 (m, 1 H), 7.58 (br d, J =8.8 Hz, 3 H), 7.41 - 7.47 (m, 4 H), 7.25 - 7.37 (m, 6 H), 5.44 (s, 2 H), 5.28 (br s, 2 H), 5.07 (s, 2 H), 5.00 (br d, J =13.88 Hz, 1 H), 4.38 (br t, J =6.94 Hz, 1 H), 4.28 (dd, J =9.13, 6.63 Hz, 1 H), 3.93 (s, 2 H), 3.43 - 3.61 (m, 12 H), 3.27 (br t, J =6.00 Hz, 4 H), 3.03 - 3.11 (m, 2 H), 2.37 (s, 3 H), 2.13 - 2.26 (m, 3 H), 1 .93 - 2.03 (m, 2 H), 1.81 - 1 .92 (m, 2 H), 1 .70 - 1 .80 (m, 1 H), 1 .30 (d, J =7.00 Hz, 3 H), 0.84 - 0.91 (m, 6 H), 0.81 (br d, J =6.75 Hz, 3 H). Example 3 - Synthesis of link
[0708] To a solution of compound I5 (150 mg, 168 pmol, 1.0 equiv.), and berzosertib (86 mg, 185 pmol, 1.1 equiv.) in DMF (1.5 mL) was added HOBt (25.0 mg, 185 pmol, 1.10 eq) and DIPEA (43.6 mg, 337 pmol, 58.8 pL, 2.00 eq). The mixture was stirred at 25 °C for 2 h. LCMS analysis showed compound I5 was consumed completely and the desired mass was detected. The mixture was purified directly by preperative-HPLC (TFA condition) to afford compound I8 (150 mg, 121 pmol, 72.2% yield, 97.1% purity) as a yellow solid. MS (ESI): [M+H]+: 1194.6
[0709] To a solution of compound 18 (150 mg, 121 pmol, 1.0 equiv.) in DMF (1.0 mL) was added triethylamine (327 mg, 3.23 mmol, 450 pL, 26.5 equiv.). The mixture was stirred at 25 °C for 2 h. LCMS analysis showed compound I8 was consumed completely and the desired product mass was observed. The reaction mixture was added to 15.0 mL isopropyl ether and centrifuged to get the crude compound I9 (200 mg, crude) as a yellow oil. MS (ESI): [M+H]+: 972.5
[0710] LP-2
[0711] To a solution of compound I9 (190 mg, 169 pmol, 1 .0 equiv.), and TCO-NHS (45.2 mg, 169 pmol, 1 .0 equiv.) in DMF (1 .5 mL) was added NMM (17.1 mg, 169 pmol, 18.6 pL, 1 .00 equiv.). The mixture was stirred at 0 °C for 3 h. LCMS showed compound I9 was consumed completely. The resultant reaction mixture was purified directly by prep-HPLC (neutral condition) to afford compound LP-2 (55.0 mg, 45.0 pmol, 27.6% yield, 95.6% purity) as a light-yellow solid. MS (ESI): [M+Na]+:1146.6;1H NMR (400 MHz, DMSO-cfe): 6 ppm 9.99 (s, 1 H), 8.94 (s, 1 H), 8.38 (d, J =8.50 Hz, 3 H), 7.96 - 8.03 (m, 2 H), 7.93 (d, J =8.63 Hz, 2 H), 7.77 (s, 1 H), 7.53 - 7.63 (m, 2 H), 7.25 - 7.46 (m, 5 H), 7.19 (br s, 2 H), 6.86 - 6.93 (m, 1 H), 5.49 - 5.60 (m, 1 H), 5.36 - 5.46 (m, 1 H), 5.07 (br s, 2 H), 4.53 (s, 2 H), 4.35 - 4.43 (m, 1 H), 4.26 - 4.32 (m, 1 H), 4.14 - 4.23 (m, 1 H), 3.93 (s, 2 H), 3.43 - 3.63 (m, 10 H), 2.98 - 3.1 1 (m, 2 H), 2.88 (s, 3 H), 2.17 - 2.30 (m, 3 H), 1 .93 - 2.05 (m, 1 H), 1 .75 - 1 .92 (m, 4 H), 1 .44 - 1 .68 (m, 3 H), 1 .26 - 1 .35 (m, 3 H), 1 .19 (d, J =6.75 Hz, 6 H), 0.77 - 0.93 (m, 6 H).
[0712] Example 4 - Synthesis of Linker-payload payload molecule-3 (LP-3) i) 2,5-dioxopyrrolidin-1-yl 1-(9H-fluoren-9-yl)-3-oxo-2,7, 10, 13-tetraoxa-4-azapentadecan-15-oate (Compound 111)
[0713] To a solution of compound 110 (25.5 g, 59.4 mmol, 1.0 eq.) in CH2CI2 (250 mL) was added HOSu (6.84 g, 59.4 mmol, 1 .0 eq.) and DCC (12.2 g, 59.4 mmol, 12.0 mL, 1 .0 eq.). The mixture was stirred at 25 °C for 12 h. Upon completion, the reaction mixture was filtered and concentrated under reduced pressure to give compound 111 as a yellow oil (31 .7 g, crude), which was used without any further purification. MS (ESI): MS calculated: 526.53, MS observed: [M+H]+= 527.1 . ii) (1-(9H-fluoren-9-yl)-3-oxo-2,7, 10, 13-tetraoxa-4-azapentadecan-15-oyl)-L-valyl-L-alanine (Compound
[0714] 112)
[0715] To a solution of compound 111 (31.3 g, 59.4 mmol, 1.0 eq.) and dipeptide Val-Ala-OH (11.1 g, 59.4 mmol, 1 .0 eq.) in DMF (300 mL) was added DIPEA (7.68 g, 59.4 mmol, 10.3 mL, 1 .0 eq.). The mixture was stirred at 25 °C for 4 h. LC-MS showed compound 111 was consumed completely. The reaction mixture was concentrated and the residue was purified by preparative HPLC to obtain compound 112 (23.5 g, 37.5 mmol, 63% yield for 2 steps) as a white solid. MS (ESI): MS calculated: 599.67, MS observed: [M+H]+= 600.3
[0716] Hi) (9H-fluoren-9-yl)methyl ((2S,5S)-1-((4-(hydroxymethyl)phenyl)amino)-5-isopropyl-2-methyl-1,4, 7- trioxo-9, 12, 15-trioxa-3,6-diazaheptadecan-17-yl)carbamate (Compound 113)
[0717] 113
[0718] To a solution of compound 112 (23.5 g, 37.5 mmol, 1.0 eq.) in CH2CI2 (235 mL) was added 4-aminobenzyl alcohol (9.25 g, 75 mmol, 2.0 eq.) and EEDQ (18.5 g, 75.0 mmol, 2.0 eq.). The mixture was stirred at 25 °C for 12 h under dark conditions. After completion, the mixture was concentrated and washed with isopropyl ether (2.35 L) to obtain compound 113 (34 g, crude) as a yellow gelatinous solid and used without further purifications. MS (ESI): MS calculated.: 704.8, MS observed: [M+H]+= 705.3 iv) ( 9H-fluoren-9-yl)m ethyl ((2S, 5S)-5-isopropyl-2-m ethyl- 1-((4-((((4- nitrophenoxy)carbonyl)oxy)methyl)phenyl)amino)-1,4, 7-trioxo-9, 12, 15-trioxa-3,6-diazaheptadecan-17- yl)carbamate (Compound 114)
[0719] To a solution of compound 113 (34 g, 45.4 mmol, 1.0 eq.) in DMF (320 mL) was added PNP2O (34.5 g, 113 mmol, 2.5 eq.) and DIPEA (15 mL, 90.8 mmol, 2.0 eq.). The mixture was stirred at 25 °C for 4 h. Upon completion, the reaction mixture was purified by preparative HPLC to obtain compound 114 (22 g, 24.6 mmol, 63% yield for 2 steps) as a yellow solid. MS (ESI): MS calculated: 869.35, MS observed: [M+H]+= 870.4
[0720] To a solution of compound 114 (2.1 g, 2.35 mmol, 1.0 eq.) and Berzosertib (1.14 g, 2.47 mmol, 1.05 eq.) in DMF (11 mL) was added HOBt (350 mg, 2.59 mmol, 1 .1 eq.) and DIPEA (778 pL, 4.71 mmol, 2.0 eq.). The mixture was stirred at 28 °C for 2 h. LC-MS analysis showed compound 114 was consumed completely. Then the reaction was concentrated and triturated with isopropyl ether (3 x 110 mL) and THE residue obtained was further purified by preparative HPLC to obtain compound 115 (2.4 g, 1 .97 mmol, 86% yield) as a yellow solid. MS (ESI): MS calculated.: 1193.49, MS observed: [M+H]+ = 1194.5
[0721] TCO-OH 116 To a solution of compound TCO-OH (200 mg, 1.58 mmol, 1.0 eq.) in dry THF (2.0 mL) was added NaH (60% dispersion in mineral oil, 190 mg, 4.75 mmol, 3.0 eq.). The mixture was stirred at 25 °C for 1 h under N2 atmosphere. Then 2-bromoacetic acid (264 mg, 1.9 mmol, 1.2 eq.) and KI (26.3 mg, 158 pmol, 0.10 eq.) were added. The mixture was stirred at 70 °C for 12 h. Upon completion, the reaction mixture was quenched with H2O (10 mL), and adjusted to pH 2 using 1 N HCI. The product was extracted with CH2CI2 (6 x 5 mL). The combined organic layers were washed with brine (3 x 5 mL) and dried over anhydrous Na2SO4, filtered, concentrated and purified by preparative HPLC to give compound 116 (82 mg, 445 pmol, 28% yield) as a white solid. MS (ESI): MS calculated.: 184.11 , MS observed: [M-H]- = 183.1.1H NMR (400 MHz, CDCI3) 6 5.77 - 5.48 (m, 1 H), 5.47 - 5.25 (m, 1 H), 3.87 - 3.69 (m, 1 H), 3.69 - 3.53 (m, 1 H), 2.99 (br d, J = 8.5 Hz, 1 H), 2.52 - 1 .63 (m, 8H), 1 .61 - 1 .40 (m, 2H).
[0722] To a solution of compound 115 (2.0 g) in DMF (14 mL) was added triethylamine (6 mL). The mixture was stirred at 25 °C for 12 h. Upon completion, isopropyl ether (200 mL) was added to the reaction mixture and compound 115* (2.0 g, crude) was collected upon centrifugation. The product was used directly for the next step without further purification. [Note 115* has the same chemical formula as 115, but R=H].
[0723] To a solution of crude 115* (265 mg, 272 pmol, 1.0 eq.) and compound 116 (50 mg, 271 pmol, 1.0 eq.) in DMF (2.5 mL) was added HATU (154 mg, 407 pmol, 1 .5 eq.) and DIPEA (89.7 pL, 542 pmol, 2.0 eq.). The mixture was stirred at 25 °C for 2 h. LC-MS analysis indicated the completion of the reaction. The reaction mixture was purified by preparative HPLC to give LP-3 (205 mg, 49% yield) as a pale-yellow solid.1H NMR (400 MHz, DMSO-d6) 5 10.05 - 9.97 (m, 1 H), 8.95 (s, 1 H), 8.46 - 8.20 (m, 3H), 8.04 - 7.88 (m, 4H), 7.78 (s, 1 H), 7.65 - 7.52 (m, 2H), 7.52 - 7.10 (m, 8H), 5.50 (br dd, J = 3.6, 11 .6 Hz, 1 H), 5.34 (br dd, J = 4.0, 1 1 .4 Hz, 1 H), 5.07 (br s, 2H), 4.53 (s, 2H), 4.45 - 4.20 (m, 2H), 3.97 - 3.90 (m, 2H), 3.78 - 3.64 (m, 2H), 3.63 - 3.40 (m, 9H), 3.23 (q, J = 6.0 Hz, 2H), 2.93 - 2.82 (m, 3H), 2.31 - 1 .67 (m, 11 H), 1 .49 - 1 .38 (m, 2H), 1 .38 - 1 .23 (m, 4H), 1 .19 (d, J = 6.8 Hz, 6H), 0.94 - 0.76 (m, 6H). MS (ESI): MS calculated.: 1137.52, MS observed: [M+H]+ = 1 138.0. HPLC purity (254 nm) = 96.8%
[0724] Example 5 - Synthesis of Linker-payload molecules LP-4, LP-5, LP-6, LP-7, LP-8 and LP-9
[0725] 117 To a solution of compound 113 (180 mg, 250 pmol, 1.0 eq.) in CH2CI2 (2.0 mL), SOCI2 (15.2 pL) was added slowly. The mixture was stirred for 2 h at 25 °C. LC-MS analysis indicated the completion of the reaction. The reaction mixture was added dropwise to the ice-cold isopropyl ether (20 ml), centrifuged, and the desired product 117 was isolated as a yellow oily residue (160 mg, crude) and used directly for the next reaction. ii) General Procedure for payload tethering (General Procedure 1A):
[0726] To a solution of compound 114 (140 pmol, 1.2 eq) in DMF (~1.0 mL) was added DIPEA (3.0 eq.), and payload molecule (1 .0 eq.) at 25 °C. The mixture was stirred at 25 °C for 2 h. The reaction progress was monitored by LC-MS analysis. Upon completion, the reaction mixture was concentrated, and the residue was either used directly or purified by preparative HPLC.
[0727] Hi) General Procedure for payload tethering (General Procedure 1B):
[0728] To a solution of payload molecule (140 pmol, 1 .0 eq.) in CH2CI2 (1 .0 mL), DMAP (3.0 eq.) and triphosgene (0.8 eq.) were added. The mixture was stirred for 2 min at 25 °C. DIPEA (2.0 eq.) was added followed by compound 113 (1 .0 eq.). The mixture was stirred for 2 h at 25 °C. The reaction was monitored by LC-MS analysis. Upon completion the reaction mixture was poured into ice-cold isopropyl ether. The precipitate was collected and further purified by preparative HPLC. iv) General Procedure for payload tethering (General Procedure 1C):
[0729] To a solution of compound 117 (-110 pmol, 1.0 eq.) in DMF (800 pL), payload molecule (0.7 eq.) and DIPEA (3.0 eq.) were added. The mixture was stirred for 12 h at 25 °C. The reaction was monitored by LC-MS analysis. Upon completion, the reaction mixture was poured into ice-cold isopropyl ether. The precipitated product was collected and used directly without further purification.
[0730] Prepared according to the General Procedure 1A: Payload: Belotecan. 118a obtained as a white solid (42.0 mg, 76% yield). MS (ESI): MS calculated: 1164.3, MS observed: [M+H]+= 1 164.0
[0731] 118b
[0732] Prepared according to the General Procedure 1 B: Payload: SN38-(OTBS). 118b collected as a yellow solid (75 mg, 57%). MS (ESI): MS calculated: 1236.5, MS observed: [M+H]+= 1237.5
[0733] Prepared according to the General Procedure 1A: Payload: Prexasertib. 118c was obtained as a colourless solid (150 mg, crude) and used directly without further purification. MS (ESI): MS calculated: 1095.48, MS observed: [M+H]+= 1096.1.
[0734] I18d
[0735] Prepared according to the General Procedure 1 C: Payload: Adavosertib; 118d was obtained as a yellow oil (70 mg, crude). MS (ESI): MS calculated: 1187.6, MS observed: [M+H]+= 1188.9
[0736] Prepared according to the General Procedure 1 C: Payload: AZD0156; 118e was obtained as a yellow oil
[0737] (70 mg, crude). MS (ESI): MS calculated: MS calculated: 1 148.5, MS observed: [M+H]+= 1149.5 x) (9H-fluoren-9-yl)methyl ((2S,5S)-1-((4-(((((S)-(2-chloro-4-fluoro-5-(7-morpholinoquinazolin-4- yl)phenyl)(6-methoxypyridazin-3-yl)methoxy)carbonyl)oxy)methyl)phenyl)amino)-5-isopropyl-2-methyl- 1,4, 7-trioxo-9, 12, 15-trioxa-3,6-diazaheptadecan-17-yl)carbamate (Compound I18f)
[0738] Prepared according to the General Procedure 1A: Payload: Nedisertib; 118f (50 mg, 40%, white solid).
[0739] MS (ESI): MS calculated: 1211.45, MS observed: [M+H]+= 1212.0. xi) General Procedure for the -NHFmoc deprotection (General Procedure 2):
[0740] To a solution of Fmoc protected amine (-40-60 pmol, 1 .0 eq.) in DMF (-0.60 mL) was added triethylamine (-0.25 mL). The reaction mixture was then stirred for 3 h at 25 °C. Upon completion, the solvents were removed and purified by preparative HPLC to get the desired product.
[0741] Prepared according to the General Procedure 2: 119a was obtained as a white solid (30 mg, 88% yield).
[0742] MS (ESI): MS calculated.: 942.0, MS observed: [M]+= 942.0. xiii) 4-((2S,5S)-17-amino-5-isopropyl-2-methyl-4,7-dioxo-9, 12, 15-trioxa-3,6- diazaheptadecanamido)benzyl ((S)-4, 11-diethyl-9-hydroxy-3, 14-dioxo-3,4, 12, 14-tetrahydro-1H- pyrano[3',4':6, 7]indolizino[1,2-b]quinolin-4-yl) carbonate (Compound 119b)
[0743] 119b
[0744] Prepared according to the General Procedure 2: 119b was obtained as a yellow solid (50 mg, crude). LC (ESI): MS calculated: 900.3, MS observed: [M+H]+=901.5
[0745] Prepared according to the General Procedure 2: 119c was obtained as a white solid (30 mg, 42% yield). MS (ESI): MS calculated: 873.41 , MS observed: [M+H]+= 874.0.
[0746] I19d
[0747] Prepared according to the General Procedure 2: 119d was obtained as a yellow solid (40 mg, 70% yield).
[0748] MS (ESI): MS cal.: 965.5, MS observed: [M+H]+= 966.5 xvi) N-(4-((2S,5S)-17-amino-5-isopropyl-2-methyl-4, 7-dioxo-9, 12, 15-trioxa-3,6- diazaheptadecanamido)benzyl)-N,N-dimethyl-3-((5-(3-methyl-2-oxo-1-(tetrahydro-2H-pyran-4-yl)-2,3- dihydro- 1H-imidazo[4, 5-c]quinolin-8-yl)pyridin-2-yl)oxy)propan- 1-aminium ( Compound 119e)
[0749] Prepared according to the General Procedure 2: 119e was obtained as a yellow solid (40 mg, 31% yield).
[0750] MS (ESI): MS calculated: 926.5, MS observed: [M+H]+= 927.5 xvii) 4-((2S,5S)-17-amino-5-isopropyl-2-methyl-4, 7-dioxo-9, 12, 15-trioxa-3,6- diazaheptadecanamido)benzyl ((S)-(2-chloro-4-fluoro-5-(7-morpholinoquinazolin-4-yl)phenyl)(6- methoxypyridazin-3-yl)methyl) carbonate (Compound 119f)
[0751] Prepared according to the General Procedure 2: 119f was isolated as a yellow solid (40 mg, 98% yield).
[0752] MS (ESI): MS calculated: 989.39, MS observed: [M+H]+= 990.4. xviii) General Procedure for DBCO coupling (General Procedure 3A):
[0753] To a solution of amine (30 pmol, 1 .0 eq.) in DMF (1 .0 mL) was added DBCO-OSu (2.0 eq.) and DIPEA (3.0 eq.). The mixture was stirred for 2 h at 25 °C. LC-MS analysis indicated the complete conversion of the amine to the desired product. The reaction mixture was concentrated under reduced pressure and directly purified by preparative HPLC to afford the desired product. xix) General Procedure for TCO coupling (General Procedure 3B):
[0754] To a solution of amine (35 pmol, 1.0 eq.) in DMF (0.3 mL) was added compound 116 (1.0 eq.), HATU (2.0 eq.) and DIPEA (2.0 eq.). The reaction mixture was stirred for 2 h at 25 °C. LC-MS analysis indicated the complete conversion of the amine to the desired product. The reaction mixture was concentred under reduced pressure and the residue was directly purified by preparative HPLC to give the desired product. xx) [4-[[(2S)-2-[[(2S)-2-[[2-[2-[2-[2-[[4-(2-azatricyclo[10.4.0.04, 9]hexadeca-1(12), 4(9), 5, 7, 13, 15-hexaen- 10-yn-2-yl)-4-oxo-butanoyl]amino]ethoxy]ethoxy]ethoxy]acetyl]amino]-3-methyl- butanoyl]amino]propanoyl]amino]phenyl]methyl N-[2-[( 19S)-19-ethyl-19-hydroxy- 14, 18-dioxo- 17-oxa-
[0755] 3, 13-diazapentacyclo[11.8.0.02, 11.04,9.015,20]henicosa-1(21),2,4,6,8, 10, 15(20)-heptaen-10-yl]ethyl]-N- isopropyl-carbamate (LP-4)
[0756] LP-4 was synthesized according to General Procedure 3A from 119a. Yield: 45%.1H NMR (400 MHz, DMSO-cfe.) 6 ppm 10.13 - 9.88 (m, 1 H), 8.43 - 8.29 (m, 1 H), 8.25 - 8.09 (m, 1 H), 8.01 - 7.82 (m, 1 H), 7.79 - 7.54 (m, 6H), 7.53 - 7.29 (m, 10H), 6.60 - 6.40 (m, 1 H), 5.51 - 5.28 (m, 4H), 5.18 - 5.05 (m, 2H), 4.49 - 4.11 (m, 3H), 4.06 - 3.85 (m, 2H), 3.67 - 3.39 (m, 18H), 3.11 - 3.03 (m, 4H), 2.71 - 2.65 (m, 2H), 2.02 - 1 .97 (m, 2H), 1 .32 - 1 .23 (m, 6H), 1 .14 - 1 .11 (m, 3H), 0.91 - 0.80 (m, 9H). MS (ESI): MS calculated: 1229.3, MS observed: [M+H]+= 1229.4. Purity (HPLC, 254 nm) = 95.5%
[0757] LP-5 was synthesized according to General Procedure 3A from 119b. Yield: 38%.1H NMR (400 MHz, DMSO-d6) 6 ppm 10.16 - 10.72 (m, 1 H), 9.93 - 10.11 (m, 1 H), 8.35 - 8.46 (m, 1 H), 8.02 - 8.09 (m, 1 H), 7.73 - 7.78 (m, 1 H), 7.65 - 7.69 (m, 1 H), 7.57 - 7.60 (m, 2 H), 7.45 - 7.46 (m, 1 H), 7.43 - 7.44 (m, 1 H),
[0758] 7.41 - 7.42 (m, 1 H), 7.35 - 7.37 (m, 1 H), 7.31 - 7.34 (m, 2 H), 7.29 - 7.30 (m, 1 H), 6.93 - 6.96 (m, 1 H),
[0759] 5.48 - 5.55 (m, 2 H), 5.29 - 5.34 (m, 2 H), 5.27 - 5.35 (m, 2 H), 5.05 - 5.11 (m, 2 H), 4.36 - 4.43 (m, 1 H),
[0760] 4.27 - 4.34 (m, 1 H), 3.92 - 3.98 (m, 2 H), 3.57 - 3.60 (m, 2 H), 3.53 - 3.55 (m, 2 H), 3.49 - 3.51 (m, 2 H),
[0761] 3.44 - 3.47 (m, 3 H), 3.44 - 3.47 (m, 3 H), 3.07 - 3.12 (m, 3 H), 2.65 - 2.71 (m, 1 H), 2.31 - 2.36 (m, 1 H),
[0762] 2.12 - 2.28 (m, 4 H), 2.06 - 2.10 (m, 1 H), 1.96 - 2.04 (m, 3 H), 1.86 - 1.94 (m, 2 H), 1.28 - 1.32 (m, 6 H), 1 .23 - 1 .26 (m, 3 H), 0.87 - 0.92 (m, 6 H), 0.80 - 0.83 (m, 3 H). MS (ESI): MS cal.: 1187.4, MS observed: [M+H]+= 1188.7. Purity (HPLC, 254 nm) = 96.2% LP-6 was synthesized according to General Procedure 3B from 118c. Yield: 46%.1H NMR(400 MHz, DMSO-cfe) 6 ppm 12.31 - 12.25 (m, 1 H), 10.68 (br s, 1 H), 10.00 (s, 1 H), 8.61 (s, 1 H), 8.40 (d, J = 6.8 Hz, 1 H), 7.56 (br d, J = 8.4 Hz, 2H), 7.49 - 7.43 (m, 2H), 7.34 - 7.21 (m, 4H), 6.91 (br d, J = 4.5 Hz, 1 H), 6.74 (t, J = 8.6 Hz, 2H), 5.59 - 5.47 (m, 1 H), 5.39 - 5.27 (m, 1 H), 4.92 (s, 2H), 4.34 (s, 2H), 4.02 (br t, J = 5.8 Hz, 2H), 3.94 (s, 2H), 3.81 (s, 2H), 3.71 (d, J = 8.6 Hz, 2H), 3.59 - 3.50 (m, 8H), 3.42 - 3.39 (m, 2H), 3.26 - 3.21 (m, 2H), 3.19 - 3.15 (m, 2H), 3.05 - 2.99 (m, 1 H), 2.33 - 2.15 (m, 4H), 2.05 - 1 .97 (m, 2H), 1 .90 - 1 .83 (m, 4H), 1 .78 - 1 .70 (m, 3H), 1 .48 - 1 .40 (m, 2H), 1 .30 (d, J = 7.1 Hz, 3H), 0.89 - 0.81 (m, 6H). MS (ESI): MS calculated: 1039.51 , MS observed: [M+H]+= 1040.5. Purity (HPLC, 254 nm) = 96.4%
[0763] LP-7 was synthesized according to General Procedure 3B using 119d . Yield: 37%.1H NMR(400 MHz, DMSO-cfe) 5 ppm 10.23 - 10.57 (m, 1 H), 8.83 - 8.88 (m, 1 H), 8.69 - 8.81 (m, 1 H), 7.99 - 8.06 (m, 1 H), 7.73 - 7.80 (m, 3 H), 7.58 - 7.67 (m, 3 H), 7.44 - 7.54 (m, 4 H), 6.99 - 7.04 (m, 2 H), 5.61 - 5.72 (m, 1 H),
[0764] 5.49 - 5.57 (m, 1 H), 5.28 - 5.37 (m, 2 H), 4.96 - 5.02 (m, 1 H), 4.78 - 4.86 (m, 1 H), 4.61 - 4.71 (m, 4 H),
[0765] 4.26 - 4.43 (m, 2 H), 3.92 - 3.97 (m, 2 H), 3.64 - 3.73 (m, 4 H), 3.54 - 3.62 (m, 6 H), 3.50 - 3.53 (m, 4 H),
[0766] 3.38 - 3.43 (m, 4 H), 3.21 - 3.25 (m, 3 H), 2.99 - 3.04 (m, 4 H), 2.31 - 2.34 (m, 1 H), 2.23 - 2.29 (m, 3 H),
[0767] 2.15 - 2.20 (m, 1 H), 1 .97 - 2.07 (m, 3 H), 1 .83 - 1 .92 (m, 3 H), 1 .74 - 1 .79 (m, 2 H), 1 .46 (s, 6 H), 1 .31 - 1.35 (m, 3 H), 0.81 - 0.90 (m, 6 H). MS (ESI): MS calculated: 1131.6, MS observed: [M+H]+= 1132.1.
[0768] Purity (HPLC, 254 nm): 97.3%
[0769] LP-8 was synthesized according to General Procedure 3B from I19e. Yield: 32% (obtained as a mixture of quaternary salts).1H NMR (400 MHz, DMSO-cfc) 5 ppm 10.17 - 10.33 (m, 1 H), 8.90 - 8.95 (m, 1 H), 8.69 (d, J=2.75 Hz, 1 H), 8.41 - 8.47 (m, 2 H), 8.22 - 8.27 (m, 1 H), 8.14 - 8.19 (m, 1 H), 7.95 - 8.00 (m, 1 H), 7.71 - 7.76 (m, 2 H), 7.39 - 7.50 (m, 4 H), 6.97 - 7.04 (m, 1 H), 5.47 - 5.57 (m, 1 H), 5.29 - 5.38 (m, 1 H), 5.11 - 5.21 (m, 1 H), 4.50 - 4.54 (m, 2 H), 4.42 - 4.46 (m, 2 H), 4.35 - 4.40 (m, 1 H), 4.27 - 4.32 (m, 1
[0770] H), 4.03 - 4.09 (m, 2 H), 3.92 - 3.96 (m, 2 H), 3.69 - 3.72 (m, 1 H), 3.51 - 3.58 (m, 10 H), 3.21 - 3.26 (m, 4
[0771] H), 2.97 - 3.00 (m, 6 H), 2.64 - 2.77 (m, 4 H), 2.30 - 2.38 (m, 4 H), 2.24 - 2.29 (m, 2 H), 2.14 - 2.21 (m, 1
[0772] H), 1 .85 - 2.04 (m, 7 H), 1 .69 - 1 .77 (m, 2 H), 1 .41 - 1 .47 (m, 2 H), 1 .30 - 1 .34 (m, 3 H), 1 .23 - 1 .26 (m, 1
[0773] H), 0.87 - 0.90 (m, 3 H), 0.79 - 0.83 (m, 3 H). MS (ESI): MS calculated: 1092.6, MS observed: [M+H]+=1093.0. Purity (HPLC, 254 nm): 99.9% (mixture of quaternary salts)
[0774] LP-9 was synthesized according to General Procedure 3B from 119f. Yield: 39%.1H NMR (400 MHz, DMSO-cfe) 6 ppm 10.04 (s, 1 H), 9.1 1 (s, 1 H), 8.40 (d, J = 6.8 Hz, 1 H), 7.85 (d, J = 9.3 Hz, 1 H), 7.83 - 7.77 (m, 2H), 7.60 - 7.55 (m, 2H), 7.53 (dd, J = 2.5, 6.6 Hz, 1 H), 7.47 - 7.42 (m, 2H), 7.29 (dd, J = 8.9, 12.5 Hz, 3H), 7.20 (d, J = 1.9 Hz, 1 H), 7.18 (s, 1 H), 5.56 - 5.46 (m, 1 H), 5.37 - 5.26 (m, 1 H), 5.14 (s, 2H), 4.39 (t, J = 7.1 Hz, 1 H), 4.29 (dd, J = 6.5, 8.9 Hz, 1 H), 4.01 (s, 3H), 3.94 (s, 2H), 3.80 - 3.73 (m, 4H), 3.70 (d, J = 8.8 Hz, 2H), 3.62 - 3.50 (m, 8H), 3.46 - 3.38 (m, 6H), 3.26 - 3.20 (m, 2H), 3.01 (br dd, J = 3.2, 9.9 Hz, 1 H), 2.31 - 2.13 (m, 3H), 2.06 - 1 .95 (m, 2H), 1.91 - 1 .80 (m, 2H), 1 .78 - 1 .70 (m, 2H), 1 .48 - 1 .39 (m, 2H), 1 .30 (d, J = 7.0 Hz, 3H), 1 .23 (s, 1 H), 0.90 - 0.80 (m, 6H). MS (ESI): MS calculated: 1155.48, MS observed: [M+H]+= 1156.5. Purity (HPLC, 254 nm): 95.2% N-[20-(11 ,12-Didehydrodibenzo[b,f]azocin-5(6H)-yl)-17,20-dioxo-4,7,10,13-tetraoxa-16-azaicosan-1- °yl]glycylglycyl-L-phenylalanyl-N-[(2-{[(1S,9S)-9-ethyl-5-fluoro-9-hydroxy-4-methyl-10,13-dioxo-2,3,9,1 0,13,15-hexahydro-1 H,12H-benzo[de]pyrano[3',4':6,7]indolizino[1 ,2-b]quinolin-1-yl]amino}-2- oxoethoxy)methyl]glycinamide) is available commercially (CAS No. : 2694856-51-2) from suppliers such as Key Organics Ltd, UK.
[0775] Example 6 - Synthesis of Linker-payload molecule LP-11
[0776] To a solution of compound 114 (2.5 g, 2.8 mmol, 1 .0 eq.) and Exatecan (1 .49 g, 2.8 mmol, 1 .0 eq.) in DMF (25 mL) was added HOBt (416 mg, 3.08 mmol, 1.1 eq.) and DIPEA (725 mg, 5.61 mmol, 927 pL, 2.0 eq.). The mixture was stirred at 25 °C for 2 h. LCMS analysis indicated the completion of the reaction. Then isopropyl ether (25 mL) was added to the reaction mixture and the precipitate formed was collected by centrifugation to obtain compound I20 (4.0 g, crude) as a brown oil and directly used for the next step. MS (ESI): MS calculated: 1165.4, MS observed: [M+H]+= 1166.1 ii) 4-((2S,5S)-17-amino-5-isopropyl-2-methyl-4,7-dioxo-9, 12, 15-trioxa-3,6-diazaheptadecanamido)benzyl ((1S,9S)-9-ethyl-5-fluoro-9-hydroxy-4-methyl-10, 13-dioxo-2,3,9, 10, 13, 15-hexahydro-1H, 12H- benzo[de]pyrano[3',4':6, 7]indolizino[ 1,2-b]quinolin-1-yl)carbamate (120*)
[0777] To a solution of compound 120 (4.0 g, 1.0 eq.) in DMF (28 mL) was added triethylamine (12 mL). The mixture was stirred at 25 °C for 12 h. Upon completion, isopropyl ether (400 mL) was added to the reaction mixture and centrifuged to obtain the intermediate amine I20* (4g, crude). The crude product was characterized using LC-MS analysis and used directly for the next step. MS (ESI): MS calculated: 943.4, MS observed: [M+H]+ = 944.2. Hi) [4-[[(2S)-2-[[(2S)-3-methyl-2-[[2-[2-[2-[2-[(3, 3, 6, 6-tetramethyl- 1-oxo-1A6-thiacyclohept-4-yn- 1- ylidene)carbamoylamino]ethoxy]ethoxy]ethoxy]acetyl]amino]butanoyl]amino]propanoyl]amino]phenyl]met hyl N-[( 10S,23S)-10-ethyl-18-fluoro-10-hydroxy-19-methyl-5,9-dioxo-8-oxa-4, 15- diazahexacyclo[ 14. 7. 1.02 14.04 13.06 11.02024]tetracosa- 1, 6(11), 12, 14, 16(24), 17, 19-heptaen-23-yl]carbamate (LP-11):
[0778] Triethylamine (23.59 pL, 37.2 pmol, 2.5 equiv.) and DMAP (10.5 mg, 85.95 pmol, 0.81 equiv.) were added successively to a solution of compound I20* (100 mg, 105.9 pmol, 1 .0 equiv.) and compound TMTHSI-OSu (37.86 mg, 111 .2 pmol, 1 .05 equiv.) in DMF (1 mL). The mixture was stirred at 25 °C for 18 h. Upon completion (as observed by LC-MS analysis), the solvent was removed under reduced pressure and the residue was purified by prep-HPLC to give LP-11 (23 mg) as a yellow solid. Purity by HPLC (220 nm): 95.6%, Rt = 10.720 min; MS (ESI): [(M+H)]+=1169.4, [(M+2H)]2+=585.5.1H NMR (400 MHz, DMSO-de) 6 ppm 9.99 (s, 1 H), 8.37 (d, J=7.00 Hz, 1 H), 8.06 (d, J=8.63 Hz, 1 H), 7.78 (d, J=10.38 Hz, 1 H), 7.59 (d, J=8.63 Hz, 2 H), 7.44 (d, J=9.13 Hz, 1 H), 7.36 (d, J=8.00 Hz, 2 H), 7.31 (s, 1 H), 6.52 (d, J=6.63 Hz, 2 H), 5.45 (s, 2 H), 5.29 (br s, 3 H), 5.08 (s, 2 H), 4.29 - 4.39 (dd, J=8.63, 6.88 Hz, 2 H), 3.95 (s, 2 H), 3.84 - 3.87 (d, 2 H), 3.42 - 3.65 (m, 10 H), 3.07 (d, J=5.25 Hz, 2 H), 2.89 (s, 1 H), 2.73 (s, 1 H), 2.38 (d, J=1 .13 Hz, 4 H), 2.15 - 2.24 (m, 2 H), 1 .95 - 2.04 (m, 2 H), 1 .82 - 1 .92 (m, 2 H), 1 .28 - 1 .34 (m, 12 H), 1.18 (s, 3 H), 0.88 (d, J=7.13 Hz, 6 H), 0.83 (d, J=6.63 Hz, 3 H).
[0779] Example 7 - Synthetic route to Linker 1 a) Compound 2 may be made from compound 1 by coupling tert-butyl 2-bromoacetate, for example using triethanolamine (TEA) in THF. b) Compound 4 - Boo protection
[0780] Compound 4 may be made from compound 3 by treatment with (Boc)2O and a base (e.g. TEA) in anhydrous conditions, such as in acetonitrile. c) Compound 5 - Alcohol to azide SN2 conversion
[0781] Compound 5 may be made from compound 4 by treating with diphenylphosphoryl azide (DPPA) and 1 ,8- diazabicyclo[5.4.0]undec-7-ene (DBU) in a dry aprotic solvent (such as toluene / DMF), for example, for 48 hours. d) Compound 6 - Boc deprotection
[0782] Compound 6 may be made from compound 5 by removal of the Boc group, for example using HCI in ethyl acetate. e) Compound 7
[0783] Compound 7 may be made from compound 6 by linking compound 6B, for example using potassium carbonate in acetonitrile, such as at 60°C. f) Compound 8
[0784] Compound 8 may be made from compound 7 by removal of the Boc group, for example using HCI in ethyl acetate. g) Compound 9
[0785] Compound 9 may be made from compound 8 by linking 9H-fluoren-9-ylmethyl N-(2-oxoethyl)carbamate, for example using NaBH(OAc)3 in DCE.
[0786] h) Compound 10
[0787] Compound 10 may be made from compound 9 by using a urea formation reaction with Compound 2. i) Compound 11
[0788] Compound 11 may be made from compound 10 by removal of the Fmoc group.
[0789] J) Compound 13 Compound 13 may be made from compound 11 by coupling 2-[4-(6-methyl-1 ,2,4,5-tetrazin-3- yl)phenyl]acetic acid. k) Linker 1 Linker 1 may be made from compound 13 by removal of the Boc and t-Butoxy groups, for example using HCI in ethyl acetate.
[0790] Example 8 - Synthetic Route to Linker 2 a Compound 14 Compound 14 may be made from compound by linking 9H-fluoren-9-ylmethyl N-(2-oxoethyl)carbamate, for example using NaBH(OAc)3 in DCE b) Compound 15
[0791] Compound 15 may be made from compound 14 by coupling 2-[4-(6-methyl-1 ,2,4,5-tetrazin-3- yl)phenyl]acetic acid. c) Compound 16
[0792] Compound 16 may be made from compound 15 by removal of the Fmoc protecting group d) Compound 17
[0793] Compound 17 may be made from compound 16 by coupling 2-[4-(6-methyl-1 ,2,4,5-tetrazin-3- yl)phenyl]acetic acid. e) Linker 2
[0794] Linker 2 may be made from compound 17 by removal of the Boc and t-Butoxy groups, for example using HCI in ethyl acetate.
[0795] Example 9 -Synthesis of linkers 3 and 4 i) Synthesis of common intermediate AA_9: i (a) Methyl 3-(2-(2-oxoethoxy)ethoxy)propanoate (Compound AA_2)
[0796] AA_1 AA_2
[0797] To a solution of compound AA_1 (37 g, 192 mmol, 1 .0 eq.) in CH2CI2 (100 mL) was added a solution of Dess-Martin periodinane (DMP) (122 g, 288 mmol, 1.5 eq.) in CH2CI2 (200 mL). The mixture was stirred at 25 °C for 4 h. Then the reaction contents were poured into saturated aqueous NaHCO3(100 mL) and extracted with CH2CI2 (3 x 100 mL). The combined organic layers were washed with saturated aqueous Na2S2O3(100 mL) and brine (3 x 50 mL), dried over anhydrous Na2SO4, and concentrated to give a residue. The residue was triturated with MeOH (200 mL) for 2 h, and the filtrate was concentrated to give compound AA_2 (>38 g, crude) as a yellow oil. The crude material was used directly for the next step without any further purification.
[0798] To a solution of compound AA_2 (36.6 g, 194 mmol, 1 .0 eq.) in MeOH (500 mL) was added compound AA_3 (68 g, 291 mmol, 1 .5 eq.), AcOH (16.7 mL, 291 mmol, 1 .5 eq.) and NaBH3CN (24.4 g, 389 mmol, 2.0 eq.). The mixture was stirred at 25 °C for 4 h. Then the reaction mixture was concentrated under reduced pressure and purified by preparative HPLC to afford compound AA_4 (24 g, 58.9 mmol, 30% yield) as a yellow oil.1H NMR (400 MHz, CDCI3) <5 ppm 3.84 (br t, J = 4.14 Hz, 2 H), 3.71 - 3.80 (m, 6 H), 3.70 (m, 4 H), 3.66 (br d, J = 2.51 Hz, 4 H), 3.62 (s, 3 H), 3.57 (d, J = 5.27 Hz, 1 H), 3.49 (s, 1 H) 3.47 (d, J = 4.77 Hz, 1 H), 3.30 (br s, 2 H), 2.58 - 2.65 (m, 2 H), 2.51 (m, 2 H), 1 .46 (s, 9 H). MS (ESI): MS calculated: 407, MS observed: [M+H]+= 408.
[0799] A solution of compound AA_5 (24.7 g, 84.6 mmol, 1 .5 eq.) and triethylamine (47 mL, 338 mmol, 6.0 eq.) in CH2CI2 (200 mL) was added slowly to an ice-cold solution of triphosgene (12.5 g, 42.3 mol, 0.70 eq.) in CH2CI2 (600 mL). The mixture was stirred at 0 °C for 1 h. Then amine AA_4 (23 g, 56.4 mmol, 1 .0 eq) in CH2CI2 (100 mL) was added slowly at 0 °C for over 10 min. The mixture was stirred at 0 °C for another 2 h. The reaction mixture was poured into saturated aqueous NaHCOs (100 mL) and extracted with CH2CI2 (3 x 100 mL). The combined organic layers were washed with brine (3 x 50 mL), dried over anhydrous Na2SO4, concentrated and purified by prep-HPLC to afford compound AA_6 (22 g, 54% yield) as a yellow solid.1H NMR (400 MHz, CDCI3) <5 ppm 5.94 - 6.06 (m, 1 H), 5.08 (br s, 1 H), 3.75 (t, J = 6.40 Hz, 2 H), 3.70 (s, 3 H), 3.58 - 3.67 (m, 22 H), 3.55 (br d, J = 4.77 Hz, 4 H), 3.47 (t, J = 5.02 Hz, 4 H), 3.34 - 3.39 (m, 2 H), 3.29 - 3.34 (m, 2 H), 2.57 - 2.64 (m, 2 H) ,2.48 - 2.53 (m, 2 H), 1 .46 (d, J = 1 .51 Hz, 18 H). LCMS: MS calculated: 725, MS observed: [M+H]+= 726.
[0800]
[0801] To a solution of compound AA_6 (22 g, 30.3 mmol, 1 ...
Claims
Claims1 . An antigen-binding molecule that binds to a target antigen, comprising (i) a target antigen-binding moiety, and (ii) at least one linker-payload moiety, wherein the antigen-binding molecule comprises (a) DNA damage response (DDR) inhibitor moiety, and (b) a DNA topoisomerase I (TOP1) inhibitor moiety.
2. The antigen-binding molecule according to claim 1 , wherein the DDR inhibitor moiety is, or comprises, a DDR inhibitor selected from: an ATR inhibitor, a PARP inhibitor, an ATM inhibitor, a WEE1 inhibitor, a CHK1 / 2 inhibitor, a DNA-PK inhibitor, a PLK1 inhibitor, a Pol0 inhibitor, a RAD51 inhibitor, a USP inhibitor, a PKMYT1 inhibitor, or an Aurora-A inhibitor.
3. The antigen-binding molecule according to claim 1 or claim 2, wherein the DDR inhibitor moiety is, or comprises a DDR inhibitor which is:(a) an ATR inhibitor, optionally wherein the DDR inhibitor moiety is, or comprises, berzosertib;(b) a CHK1 / 2 inhibitor, optionally wherein the DDR inhibitor moiety is, or comprises, prexasertib;(c)a WEE1 inhibitor, optionally wherein the DDR inhibitor moiety is, or comprises, adavosertib;(d) an ATM inhibitor, optionally wherein the DDR inhibitor moiety is, or comprises, AZD0156; or(e) a DNA-PK inhibitor, optionally wherein the DDR inhibitor moiety is, or comprises, nedisertib.
4. The antigen-binding molecule according to any one of claims 1 to 3, wherein the TOP1 inhibitor moiety is, or comprises, a TOP1 inhibitor selected from: camptothecin or a derivative thereof, exatecan, exatecan mesylate (DX-8951f), A / -glycyl-exatecan, SN-38, DXd(1), DXd(2), irinotecan, etirinotecan, FL118, topotecan, gimatecan, belotecan, deruxtecan, belotecan, rubitecan, lurtotecan, diflomotecan, karenitecan, silatecan, namitecan, elomotecan, DRF-1042, delimotecan, NSC606985, chimmitecan, ZBH-1205, Genz- 644282, non-CPT1 , indotecan, indimitecan, AZ14170132, SHR9265, Ed-04, KL610023, A1.9, ZD06519, P1003, P1021 , VIP126, ZBH-01 and LMP-744.
5. The antigen-binding molecule according to any one of claims 1 to 4, wherein the TOP1 inhibitor moiety is, or comprises, a TOP1 inhibitor selected from: exatecan, belotecan, SN-38 and DXd.
6. The antigen-binding molecule according to any one of claims 1 to 5, wherein the antigen-binding molecule comprises a linker-payload moiety comprising (a) a DDR inhibitor moiety, and (b) a TOP1 inhibitor moiety.
7. The antigen-binding molecule according to claim 6, wherein the linker-payload moiety comprises:(a) an amino group for conjugation to an antigen-binding moiety;(b) at least one first payload comprising moiety clicked to a first click group, where the first payload comprising moiety comprises a DDR inhibitor moiety;(c) at least one second payload comprising moiety clicked to a second click group, where the second payload comprising moiety comprises a TOP1 inhibitor moiety;(d) the branching group:wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
8. A composition comprising an antigen-binding molecule according to any one of claims 1 to 7, and a pharmaceutically acceptable carrier, diluent, excipient or adjuvant.
9. An antigen-binding molecule according to any one of claims 1 to 7, or a composition according to claim 8, for use in a method of medical treatment or prophylaxis, or in a method of diagnosis or prognosis.
10. An antigen-binding molecule according to any one of claims 1 to 7, or a composition according to claim 8, for use in treating or preventing a cancer.
11. Use of an antigen-binding molecule according to any one of claims 1 to 7, or a composition according to claim 8, in the manufacture of a medicament for treating or preventing a cancer.
12. A method of treating or preventing a cancer, comprising administering to a subject a therapeutically- or prophylactically-effective amount of an antigen-binding molecule according any one of claims 1 to 7, or a composition according to claim 8.
13. The antigen-binding molecule or composition for use according to claim 10, the use according to claim 11 , or the method according to claim 12, wherein the cancer is selected from: a cancer comprising cells expressing / overexpressing the target antigen.
14. The antigen-binding molecule or composition for use according to claim 10 or claim 13, the use according to claim 11 or claim 13, or the method according to claim 12 or claim 13, wherein the cancer is refractory or relapsed to treatment with a DDR inhibitor, and / or wherein the cancer is refractory or relapsed to treatment with a TOP1 inhibitor.
15. Use of an antigen-binding molecule according to any one of claims 1 to 7, or a composition according to claim 8, to deplete or increase killing of cells expressing the target antigen.
16. An in vitro complex, optionally isolated, comprising an antigen-binding molecule according to any one of claim 1 to 7 bound to the target antigen.
17. A tri-functional linker moiety comprising:(a) an amino group for conjugation to an antigen-binding moiety;(b) at least one first click group for connecting a first payload comprising moiety;(c) at least one second click group for connection of a second payload comprising moiety;(d) the branching group:wherein RNis selected from H and -(C1-5 alkylene)-C(O)OH, where one CH2 unit may be replaced by -O-, a indicates where the amino group is linked to the branching group; b indicates where the at least one first click group is linked to the branching group; c indicates where the at least one second click group is linked to the branching group.
18. The tri-functional linker moiety according to claim 17, wherein RNis H or CH2C(O)OH.
19. The tri-functional linker moiety according to either claim 17 or claim 18, wherein the amino group is linked to the branching group by a first spacer group (A1) which is of the formula:-(CH2)xa-(C2H4O)xb-(CH2)xc-, where xa is 0 or 1 , xb is 0-12, and xc is 0 to 6, wherein at least one of xa and xb is 1 .
20. The tri-functional linker moiety according to claim 19, wherein A1 is -(CH2)5-, -(C2H4)-O-(C2H4)-, or -(C2H4O)3-(C2H4)-.21 . The tri-functional linker moiety according to any one of claims 17 to 20, wherein the first and second click groups are selected from orthogonal click-group pairs.
22. The tri-functional linker moiety according to claim 21 , wherein the first click group is azide and the second click group is:
23. The tri-functional linker moiety according to any one of claims 17 to 22, wherein the at least one first click group is linked to the branching group by a second spacer group (B1) of formula:(B1-1):RL1is -(C2H4O)xi3-(CH2)xd-(C(=O))xi4- where xl3 is 0 to 4, xd is 0 to 3, xl4 is 0 or 1 ,RNB1is -(C2H4O)xei-(CH2)xfi-(NH)xSi-(C(=O)CH2)xhi- where xe1 is 0 to 4, xf1 is 0 to 2, xg1 is 0 or 1 , and xh1 is 0 or 1 ,RNB2iS H Or -(C2H4O)xe2-(CH2)xf2-(NH)xS2-(C(=O)CH2)xh2- where xe2 is 0 to 4, xf2 is 0 to 2, xg2 is 0 or 1 , and xh2 is 0 or 1 ; and the at least one second click group is linked to the branching group by a third spacer group (B2) of formula (B2-1):RL2is -(C2H4O)xi5-(CH2)xi-(C(=O))xi6- where xl6 is 0 to 4, xi is 0 to 3, xl6 is 0 or 1 ,RNB3is -(C2H4O)xji-(CH2)xki-(NH)xn-(C(=O)CH2)xmi- where xj 1 is 0 to 4, xk1 is 0 to 2, xl1 is 0 or 1 , and xml is 0 or 1 ,RNB4is H or -(C2H4O)xj2-(CH2)xk2-(NH)xi2-(C(=O)CH2)xm2- where xj2 is 0 to 4, xk2 is 0 to 2, xl2 is 0 or 1 , and xm2 is 0 or 1 .
24. The tri-functional linker moiety according to claim 23, wherein the second spacer group (B1) and the third spacer group (B2), together with the nitrogen atom to which they are attached form a group selected from:; and25. The tri-functional linker moiety according to claim 17, which is selected from:d)26. A conjugate comprising: (a) at least a first payload and at least a second payload;(b) an antigen-binding moiety; wherein the linker between the payloads and the antibody comprises a moiety derived from a compound according to any one of claims 17 to 25.
27. A linker-payload molecule comprising at least a first payload and at least a second payload for conjugation to an antigen-binding moiety, wherein the linker for conjugation to the antibody comprises a moiety derived from a compound according to any one of claims 17 to 25.
28. A modified antigen-binding moiety comprising a moiety derived from a compound according to any one of claims 17 to 25.
Citation Information
Patent Citations
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