Nucleoside dimers, methods of making and use in DNA synthesis

CN116903690BActive Publication Date: 2026-08-28ACADEMY OF MILITARY MEDICAL SCIENCES
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Patent Information

Application Number
CN202310865673.2
Authority / Receiving Office
CN · China
Patent Type
Patents(China)
Current Assignee / Owner
Filing Date
2023-07-14
Publication Date
2026-08-28
Estimated Expiration
2043-07-14

AI Technical Summary

Technical Problem

但是也存在诸多问题,一是甲酯不易脱保护,合成寡核苷酸链越长,所需脱除的甲酯越多,常用苯硫酚才能将甲酯保护脱除完全,后再使用氨水脱除其他保护基,而苯硫酚是一种带有恶臭味的剧毒化学品,不利于基于二聚体的模块化DNA合成的推广使用;二是合成亚磷酰胺(P(III))时,甲酯的稳定性不及氰乙基酯,现有文献报道的工艺均为小量的克级(1g)制备,仅应用于简单序列、短链寡核苷酸(低于30nt)的制备,对于长链寡核苷酸及高保真DNA合成未见报道

Benefits of technology

[0090](1)本发明核苷二聚体采用甲基磷酸酯、β-氰乙基亚磷酰胺的混合骨架,提高寡核苷酸合成的效率,满足合成生物学对高保真DNA合成的需求;

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Abstract

The application provides a nucleoside dimer, a preparation method thereof and application in DNA synthesis. The nucleoside dimer of the application adopts a mixed skeleton of methyl phosphate and beta-cyanoethyl phosphoramidite, a new preparation method of the nucleoside dimer is obtained by optimizing a synthesis method and a purification process, and a foundation for high-quality DNA synthesis is laid. On this basis, the nucleoside dimer with the new skeleton is applied to DNA synthesis, an oligonucleotide fragment synthesis method suitable for the dimer is established, and an oligonucleotide fragment with a length of 100 nt is synthesized. Fidelity experiment shows that the error rate of the DNA fragment synthesized by using the dimer is only 3.75 errors / Kb, and high-fidelity DNA synthesis is realized. The preparation method of the nucleoside dimer with the new skeleton can realize large-scale and high-purity preparation, the nucleoside dimer can play an important role in improving the length and fidelity of oligonucleotide synthesis, and has practical value.
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Citation Information

Patent Citations

  • Method and system for synthesizing oligonucleotide

    WO2019158007A1