Lateral flow methods, assays and devices for detecting the presence or measuring the amount of ubiquitin carboxy-terminal hydrolase L1 and / or glial fibrillary acidic protein in a sample - Patent Application 20070233334
Patent Information
- Application Number
- JP2024546138
- Authority / Receiving Office
- JP · JP
- Patent Type
- Applications
- Current Assignee / Owner
- Priority Date
- 2023-02-02
- Filing Date
- 2023-02-03
- Publication Date
- 2025-03-18
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Figure 2025507303000001 
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Figure 2025507303000003
Abstract
Description
[Technical field]
[0001] This application claims priority to U.S. Patent Application No. 63 / 306,788, filed February 4, 2022, U.S. Patent Application No. 63 / 435,834, filed December 29, 2022, and U.S. Patent Application No. 63 / 482,808, filed February 2, 2023, the contents of each of which are incorporated herein by reference.
[0002] The computer readable nucleotide / amino acid sequence listing submitted herewith is incorporated by reference in its entirety into this specification and is identified as follows in a single 6,164 byte XML file named "40222-601_ST26.XML" created on February 2, 2023.
[0003] The present disclosure relates to methods for determining the amount or presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1), glial fibrillary acidic protein (GFAP), or the amount or presence of UCH-L1 and the amount or presence of GFAP, in a biological sample obtained from a subject, comprising: [Background technology]
[0004] Over 5 million mild traumatic brain injuries (TBIs) occur annually in the United States alone. Currently, there are no simple, objective, and accurate measurements available to aid in patient evaluation. Indeed, much of TBI assessment and diagnosis is based on subjective data. Unfortunately, objective measurements such as head CT and Glasgow Coma Scale (GCS) scores are not very comprehensive or sensitive in assessing mild TBI. Furthermore, head CT scans reveal nothing about mild TBI in most cases, are expensive, and expose patients to unnecessary radiation. In addition, a negative head CT does not mean that the patient is clearly not concussed, only that certain interventions, such as surgery, are not warranted. Physicians and patients need objective and reliable information to accurately assess this condition and facilitate appropriate triage and recovery. To date, there has been limited data available for the use of UCH-L1 and GFAP in emergency care situations to aid in patient assessment and management. To date, there are limited data available for the use of UCH-L1 and GFAP in the acute care setting to aid in patient assessment and management.
[0005] Mild TBI or concussion is much more difficult to detect objectively and is a routine challenge in emergency rooms worldwide. Concussion does not usually cause gross pathology such as hemorrhage or abnormalities in conventional computed tomography scans of the brain, but causes rapid-onset neurological dysfunction that resolves in a spontaneous manner over days to weeks. Approximately 15% of mild TBI patients suffer from persistent cognitive dysfunction. There is an unmet need to detect and evaluate mild TBI victims in the field, in emergency rooms and clinics, on sports fields, and in military activities (e.g., combat).
[0006] Current algorithms for assessing the severity of brain injury include the Glasgow Coma Scale score and other criteria. These criteria may be adequate to correlate acute severity, but are insufficiently sensitive to subtle pathologies that may result in persistent deficits. GCS and other criteria also do not allow for differentiation between types of injury and may not be adequate. Thus, patients classified into a single GCS level who enter clinical trials may have highly heterogeneous severity and type of injury. Inappropriate classification undermines the integrity of clinical trials, as outcomes vary accordingly. Improved classification of injury would allow for more accurate delineation of disease severity and type for TBI patients in clinical trials. Summary of the Invention [Problem to be solved by the invention]
[0007] In addition, current brain injury trials rely on outcome measures, such as the Glasgow Outcome Scale-Extended, that capture global phenomena but cannot assess nuances in outcome. Sensitive outcome measures are needed to determine how well patients have recovered from brain injury in order to test therapeutic and preventative drugs. [Means for solving the problem]
[0008] Summary of the Invention In one embodiment, the present disclosure provides: performing at least one lateral flow assay on a biological sample obtained from the subject to determine the amount or presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1), glial fibrillary acidic protein (GFAP), or the amount or presence of UCH-L1 and the amount or presence of GFAP; and and displaying the determined amount or presence of UCH-L1, GFAP, or UCH-L1 and GFAP in the sample. In some embodiments of the above-mentioned methods, at least one lateral flow assay is part of a lateral flow device. In still further embodiments of the above-mentioned methods, the lateral flow device comprises: (a) at least one test strip; or (b) at least two test strips.
[0009] In some embodiments of the above-described methods, (a) the lateral flow assay for UCH-L1 comprises a first specific binding partner that binds to an epitope in UCH-L1 and a second specific binding partner that comprises a detectable label; (b) the lateral flow assay for GFAP comprises a third specific binding partner that binds to an epitope in GFAP and a fourth specific binding partner that comprises a detectable label. In still further embodiments, the first specific binding partner, the second specific binding partner, the third specific binding partner, the fourth specific binding partner, or any combination thereof, is an antibody or an antibody fragment thereof.
[0010] In yet another embodiment, the method is used to aid in the diagnosis and assessment of a subject who has or may have suffered a head injury. For example, in another embodiment, the subject is diagnosed with a traumatic brain injury. If the subject is diagnosed with a traumatic brain injury, the subject may be further diagnosed with mild, moderate, severe, or moderate-severe traumatic brain injury.
[0011] In yet a further embodiment of the above-described method, the method may be used to determine whether a subject should undergo a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) scan, or both a head CT scan and an MRI scan.
[0012] In still yet further embodiments, the subject is a human subject (eg, an adult subject and / or a pediatric subject).
[0013] In still yet further embodiments of the above-mentioned methods, the biological sample is a sample selected from the group consisting of a whole blood sample, a urine sample, a cerebrospinal fluid sample, a tissue sample, a bodily fluid sample, a saliva sample, an oropharyngeal specimen, and a nasopharyngeal specimen. For example, in some embodiments, the sample is a whole blood sample. In other embodiments, the sample is a plasma sample. In still further embodiments, the sample is a serum sample. In still yet further embodiments, the sample is a saliva sample. In still yet further embodiments, the sample is a urine sample. In still yet other embodiments, the sample is an oropharyngeal sample. In still other embodiments, the sample is a whole blood sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In other embodiments, the sample is a plasma sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In still further embodiments, the sample is a serum sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In still yet further embodiments, the sample is a saliva sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In still yet further embodiments, the sample is a urine sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In still other embodiments, the sample is an oropharyngeal sample and the subject is a human subject (e.g., an adult and / or a pediatric subject).
[0014] In still further embodiments of the above-mentioned methods, the at least one lateral flow assay for GFAP, the at least one lateral flow assay for UCH-L1, or the at least one lateral flow assay for GFAP and the at least one lateral flow assay for UCH-L1, respectively, is performed or can be performed in less than about 30 minutes, less than about 25 minutes, less than about 20 minutes, less than about 18 minutes, or less than about 15 minutes. In still further embodiments of the above-mentioned methods, the at least one lateral flow assay for GFAP, the at least one lateral flow assay for UCH-L1, or the at least one lateral flow assay for GFAP and the at least one lateral flow assay for UCH-L1, respectively, is performed or can be performed in a time ranging from about 4 to about 20 minutes, from about 10 to about 15 minutes, or from about 15 to about 18 minutes.
[0015] In another embodiment, the present disclosure relates to a kit for carrying out the above-mentioned method. The kit can include: (a) a first lateral flow device for detecting the presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) in a sample; (b) a second lateral flow device for detecting the presence of glial fibrillary acidic protein (GFAP) in the sample; and (c) instructions for detecting the presence of UCH-L1 and GFAP in the sample.
[0016] In another embodiment, the present disclosure relates to a kit for carrying out the above-mentioned method, which can include (a) a lateral flow device for detecting the presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) and glial fibrillary acidic protein (GFAP) in a sample; and (b) instructions for detecting the presence of UCH-L1 and GFAP in a sample.
[0017] In another embodiment, the present disclosure provides: performing at least one lateral flow assay on a biological sample obtained from the subject to determine the amount or presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1), glial fibrillary acidic protein (GFAP), or both UCH-L1 and GFAP; and Visualizing the amount or presence of the determined UCH-L1, GFAP, UCH-L1 and GFAP in the sample. wherein the assay does not require a device (e.g., a reader or reading device) to read the amount or presence of UCH-L1, GFAP, or UCH-L1 and GFAP.
[0018] In some embodiments of the above-described methods, (a) the lateral flow assay for UCH-L1 comprises a first specific binding partner that binds to an epitope in UCH-L1 and a second specific binding partner that comprises a detectable label; (b) the lateral flow assay for GFAP comprises a third specific binding partner that binds to an epitope in GFAP and a fourth specific binding partner that comprises a detectable label. In still further embodiments, the first specific binding partner, the second specific binding partner, the third specific binding partner, the fourth specific binding partner, or any combination thereof, is an antibody or an antibody fragment thereof.
[0019] In yet another embodiment, the method is used to aid in the diagnosis and assessment of a subject who has or may have suffered a head injury. For example, in another embodiment, the subject is diagnosed with a traumatic brain injury. If the subject is diagnosed with a traumatic brain injury, the subject may be further diagnosed with mild, moderate, severe, or moderate-severe traumatic brain injury.
[0020] In yet a further embodiment of the above-described method, the method may be used to determine whether a subject should undergo a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) scan, or both a head CT scan and an MRI scan.
[0021] In still yet further embodiments, the subject is a human subject (eg, an adult subject and / or a pediatric subject).
[0022] In still yet further embodiments of the above-mentioned methods, the biological sample is a sample selected from the group consisting of a whole blood sample, a urine sample, a cerebrospinal fluid sample, a tissue sample, a bodily fluid sample, a saliva sample, an oropharyngeal specimen, and a nasopharyngeal specimen. For example, in some embodiments, the sample is a whole blood sample. In other embodiments, the sample is a plasma sample. In still further embodiments, the sample is a serum sample. In still yet further embodiments, the sample is a saliva sample. In still yet further embodiments, the sample is a urine sample. In still yet other embodiments, the sample is an oropharyngeal sample. In still other embodiments, the sample is a whole blood sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In other embodiments, the sample is a plasma sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In still further embodiments, the sample is a serum sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In still yet further embodiments, the sample is a saliva sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In still yet further embodiments, the sample is a urine sample and the subject is a human subject (e.g., an adult and / or a pediatric subject). In still other embodiments, the sample is an oropharyngeal sample and the subject is a human subject (e.g., an adult and / or a pediatric subject).
[0023] In still further embodiments of the above-mentioned methods, the at least one lateral flow assay for GFAP, the at least one lateral flow assay for UCH-L1, or the at least one lateral flow assay for GFAP and the at least one lateral flow assay for UCH-L1, respectively, is performed or can be performed in less than about 30 minutes, less than about 25 minutes, less than about 20 minutes, less than about 18 minutes, or less than about 15 minutes. In still further embodiments of the above-mentioned methods, the at least one lateral flow assay for GFAP, the at least one lateral flow assay for UCH-L1, or the at least one lateral flow assay for GFAP and the at least one lateral flow assay for UCH-L1, respectively, is performed or can be performed in a time ranging from about 4 to about 20 minutes, from about 10 to about 15 minutes, or from about 15 to about 18 minutes.
[0024] In another embodiment, the present disclosure relates to a kit for carrying out the above-mentioned method. The kit can include: (a) a first lateral flow device for detecting the presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) in a sample; (b) a second lateral flow device for detecting the presence of glial fibrillary acidic protein (GFAP) in the sample; and (c) instructions for detecting the presence of UCH-L1 and GFAP in the sample.
[0025] In another embodiment, the present disclosure relates to a kit for carrying out the above-mentioned method. The kit can include (a) a lateral flow device for detecting the presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) and glial fibrillary acidic protein (GFAP) in a sample; and (b) instructions for detecting the presence of UCH-L1 and GFAP in a sample. The lateral flow device contained in the kit can contain one test strip for detecting the presence or amount of UCH-L1 and GFAP in a sample. Alternatively, the lateral flow device can contain a first test strip for determining the presence or amount of UCH-L1 in a sample, and a second test strip for determining the presence or amount of GFAP in a sample. DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
[0026] The present disclosure relates to methods, lateral flow assays and devices for determining the presence or amount of GFAP, UCH-L1, or GFAP and UCH-L1 in a sample obtained from a subject. In some embodiments, the method comprises detecting the presence of GFAP, UCH-L1, or GFAP and UCH-L1 in a sample obtained from a subject by performing a lateral flow assay. In other embodiments, the method comprises determining whether the levels of GFAP, UCH-L1, or GFAP and UCH-L1 in a sample obtained from a subject are elevated by performing a lateral flow assay.
[0027] The section headings used in this section and throughout the disclosure herein are for organizational purposes only and are not intended to be limiting.
[0028] 1.Definition Unless otherwise specified, all technical and scientific terms used herein have the same meaning as commonly understood by those skilled in the art. In case of discrepancy, the present document, including definitions, will prevail. In the practice or testing of this disclosure, methods and materials similar or equivalent to those described herein may be used, but the preferred methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. The materials, methods, and examples disclosed herein are illustrative only and are not intended to be limiting.
[0029] As used herein, the terms "comprise(s)," "include(s)," "having," "having," "may be," and "containing" are open-ended transitional phrases, transitional terms, or transitional words that do not exclude additional acts or structures. The singular forms "a," "an," and "the" include plural referents unless the context clearly dictates otherwise. The present disclosure also contemplates other embodiments that "comprise," "consist of," or "consist essentially of" the embodiments or elements presented herein, whether expressly stated or not.
[0030] In this specification, to recite numerical ranges, each intervening number with the same precision is expressly contemplated. For example, for the range of 6 to 9, in addition to 6 and 9, the numbers 7 and 8 are also contemplated, and for the range of 6.0 to 7.0, the numbers 6.0, 6.1, 6.2, 6.3, 6.4, 6.5, 6.6, 6.7, 6.8, 6.9, and 7.0 are expressly contemplated.
[0031] As used herein, the suffix "free" refers to an embodiment of a technology that omits the base or root feature of the word to which it is attached. That is, the term "X-free" as used herein means "without X," where X is the feature of the technology that is omitted in the "X-free" technology. For example, a "calcium-free" composition does not contain calcium, a "mixing-free" method does not include a mixing step, etc.
[0032] Terms such as "first", "second", "third", etc. may be used herein to describe various steps, elements, compositions, components, regions, layers and / or sections, but these steps, elements, compositions, components, regions, layers and / or sections should not be limited by these terms unless otherwise indicated. These terms are used to identify a single step, element, composition, component, region, layer and / or section. Terms such as "first", "second" and other numerical terms, when used herein, do not imply a sequence or order unless clearly indicated by the context. Thus, a first step, element, composition, component, region, layer or section described herein can be referred to as a second step, element, composition, component, region, layer or section without departing from the art.
[0033] As used herein, an "affinity matured antibody" refers to an antibody that has been subjected to a process to reduce the affinity (i.e., K D , k d or k aThe term affinity matured antibody is used to refer to an antibody with one or more alterations in one or more CDRs that result in an improvement over a parent antibody without the alterations. Exemplary affinity matured antibodies have nanomolar or even picomolar affinities for the target antigen. Various procedures for generating affinity matured antibodies are known in the art, including screening combinatorial antibody libraries prepared using BioDisplay technology. For example, Marks et al., BioTechnology, 10:779-783 (1992) describes affinity maturation by VH and VL domain shuffling. Random mutagenesis of CDR and / or framework residues has been described by Barbas et al., Proc. Nat. Acad. Sci. USA, 91:3809-3813 (1994); Schier et al., Gene, 169:147-155 (1995); Yelton et al., J. Immunol., 155:1994-2004 (1995); Jackson et al., J. Immunol., 154(7):3310-3319 (1995) and Hawkins et al., J. Mol. Biol., 226:889-896 (1992). Selective mutagenesis positions and selective mutations at contact or hypermutation positions with activity enhancing amino acid residues have been described in U.S. Patent No. 6,914,128 B1.
[0034] As used herein, "amount" refers to a specified (e.g., more or less) content or number, e.g., the number can be a level, such as a location on a real or imaginary scale of amount or content, or a concentration, such as the relative amount of a given substance contained within a solution or in a particular volume of space, e.g., the amount of solute per unit volume of solution.
[0035] As used herein, "antibody" and "antibodies" include mammalian antibodies, including monoclonal antibodies, polyspecific antibodies, human antibodies, humanized antibodies (fully humanized or partially humanized), avian (e.g., duck or goose) antibodies, shark antibodies, whale antibodies, and non-primate (e.g., cow, pig, camel, llama, horse, goat, rabbit, sheep, hamster, guinea pig, cat, dog, rat, mouse, etc.) antibodies or non-human primate (e.g., monkey, chimpanzee, etc.) antibodies. It refers to, but is not limited to, animal antibodies, recombinant antibodies, chimeric antibodies, single chain Fvs ("scFvs"), single chain antibodies, single domain antibodies, Fab fragments, F(ab') fragments, F(ab')2 fragments, disulfide-linked Fvs ("sdFvs") and anti-idiotypic ("anti-Id") antibodies, dual domain antibodies, dual variable domain (DVD) or triple variable domain (TVD) antibodies (dual variable domain immunoglobulins and methods for producing them are described in Wu, C. et al., Nature Biotechnology, 25(11):1290-1297 (2007) and PCT International Application No. 2001 / 058956, the contents of each of which are incorporated herein by reference), and functionally active epitope-binding fragments of any of the above. In particular, antibodies include immunoglobulin molecules and immunologically active fragments of immunoglobulin molecules, i.e., molecules that contain an analyte-binding site. Immunoglobulin molecules can be of any type (e.g., IgG, IgE, IgM, IgD, IgA and IgY), class (e.g., IgG1, IgG2, IgG3, IgG4, IgA1 and IgA2) or subclass of molecule. For simplicity, antibodies to an analyte are frequently referred to herein as either "anti-analyte antibodies" or simply "analyte antibodies" (e.g., anti-UCH-L1 antibodies or UCH-L1 antibodies).
[0036] As used herein, an "antibody fragment" refers to a portion of an intact antibody that contains the antigen-binding site or variable region. The portion does not contain the heavy chain constant domain of the Fc region of the intact antibody (i.e., CH2, CH3 or CH4, depending on the antibody isotype). Examples of antibody fragments include, but are not limited to, Fab fragments, Fab' fragments, Fab'-SH fragments, F(ab')2 fragments, Fd fragments, Fv fragments, diabodies, single-chain Fv (scFv) molecules, single-chain polypeptides containing only one light chain variable domain, single-chain polypeptides containing three CDRs of a light chain variable domain, single-chain polypeptides containing only one heavy chain variable region, and single-chain polypeptides containing three CDRs of a heavy chain variable region.
[0037] As used herein, "binding protein" is used to refer to a monomeric or multimeric protein that binds to and forms a complex with a binding partner, such as, for example, a polypeptide, an antigen, a compound or other molecule, or a substrate of any kind. A binding protein specifically binds to a binding partner. Binding proteins include antibodies, as well as their antigen-binding fragments and various other forms and derivatives thereof known in the art and described herein below, and other molecules that contain one or more antigen-binding domains that bind to an antigen molecule or a specific site (epitope) on an antigen molecule. Thus, binding proteins include, but are not limited to, antibodies that are tetrameric immunoglobulins, IgG molecules, IgG1 molecules, monoclonal antibodies, chimeric antibodies, CDR-grafted antibodies, humanized antibodies, affinity matured antibodies, and any such antibody fragments that retain the ability to bind to an antigen.
[0038] As used herein, "bispecific antibodies" are used to refer to full-length antibodies generated by quadroma technology (see Milstein et al., Nature, 305(5934):537-540 (1983)), chemical conjugation of two different monoclonal antibodies (see Staerz et al., Nature, 314(6012):628-631 (1985)), or the knob-into-hole (KIH) method or similar techniques that introduce mutations within the Fc region (see Holliger et al., Proc. Natl. Acad. Sci. USA, 90(14):6444-6448 (1993)), resulting in a number of different immunoglobulin species, only one of which is a functional bispecific antibody. A bispecific antibody binds one antigen (or epitope) in one of its two binding arms (one pair of HC / LC) and binds a different antigen (or epitope) in its second arm (a different pair of HC / LC). By this definition, a bispecific antibody has two significantly different antigen-binding arms (both specificity and CDR sequences) and is monovalent for each antigen to which it binds.
[0039] As used herein, "CDR" is used to refer to a "complementarity determining region" within the variable sequence of an antibody. There are three CDRs in each of the heavy and light chain variable regions. From the N-terminus of the heavy or light chain, these regions are designated as "CDR1", "CDR2" and "CDR3" for each of the variable regions. As used herein, the term "CDR set" refers to a group of three CDRs occurring in a single variable region that bind to an antigen. Thus, an antigen-binding site may contain six CDRs, including a CDR set from each of the heavy and light chain variable regions. A polypeptide containing a single CDR (e.g., CDR1, CDR2 or CDR3) may be referred to as a "molecular recognition unit". Crystal structure analysis of antigen-antibody complexes supports that the amino acid residues of the CDRs make extensive contacts with the bound antigen, with the most extensive antigen contact being with the heavy chain CDR3. Thus, the molecular recognition units may be primarily responsible for the specificity of an antigen-binding site. In general, the CDR residues are directly and most substantially involved in influencing binding to antigen.
[0040] The exact boundaries of these CDRs have been defined differently according to different systems. The system described by Kabat (Kabat et al., "Sequences of Proteins of Immunological Interest," National Institutes of Health, Bethesda, Md. (1987) and (1991)) not only provides an unambiguous residue numbering system that is applicable to any variable region of an antibody, but also provides the exact residue boundaries that define the three CDRs. These CDRs may be referred to as "Kabat CDRs." Chothia and colleagues (Chothia and Lesk, J. Mol. Biol., 196:901-917 (1987); and Chothia et al., Nature, 342:877-883 (1989)) have described the Kabat CDRs in a numbered system that is applicable to any variable region of an antibody. It was found that certain sub-portions within the CDRs adopt nearly identical peptide backbone conformations despite great diversity at the amino acid sequence level. These sub-portions were designated "L1", "L2" and "L3", or "H1", "H2" and "H3", with "L" and "H" designating the light and heavy chain regions, respectively. These regions are sometimes referred to as "Chothia CDRs", which have boundaries that overlap with the Kabat CDRs. Other boundaries defining CDRs that overlap with the Kabat CDRs are described in Padlan, FASEB, and others. J., 9:133-139 (1995); and MacCallum, J. Mol. Biol., 262(5):732-745 (1996). Still other CDR boundary definitions may not strictly follow the system defined herein and may be shorter or longer in light of predicted or experimental findings that a particular residue or group of residues or even the entire CDR does not significantly affect binding to the antigen, but still overlap with the Kabat CDRs. The methods used herein may use CDRs defined according to any of these systems, although certain embodiments use the Kabat-defined CDRs or the Chothia-defined CDRs.
[0041] A "control zone" or "control line," used interchangeably herein, refers to an area of a test strip where a label can be observed to shift position, appear, change color, or disappear, indicating that the assay has been performed correctly. Detection or observation of a control zone (e.g., a control line) can be by any convenient means, depending on the particular choice of label, including, but not limited to, for example, visually, by fluorescence, by reflectance, by x-ray examination, and others. In some embodiments, a label may or may not be applied directly to the control zone, depending on the design of the control being used.
[0042] As used herein, "CT scan" refers to a computed tomography (CT) scan. A CT scan combines a series of X-ray images taken from different angles and uses computer processing to create cross-sectional images or slices of bones, blood vessels, and soft tissues within the body. A CT scan may use X-ray CT, positron emission tomography (PET), single photon emission computed tomography (SPECT), computer axial tomography (CAT scan), or computer-assisted tomography. A CT scan may be a conventional CT scan or a spiral / spiral CT scan. In a conventional CT scan, the scan is acquired slice by slice, stopping and moving to the next slice after each slice scan, e.g., from above the abdomen to the pelvis. A conventional CT scan requires the patient to hold their breath to avoid motion artifacts. A spiral / spiral CT scan is a continuous scan, acquired in a spiral, and the scanned images are continuous, making the process much quicker.
[0043] As used interchangeably herein, "decentralize," "decentralized," or "decentralized," in the context of testing, refers to the performance of one or more medical tests and / or assays outside of traditional medical settings (e.g., hospitals, doctors' offices, free-standing sample collection or research sites, etc.) at one or more locations, such as an urgent care clinic, retail clinic, pharmacy, grocery or convenience store, residence (e.g., house, apartment, etc.), workplace, and / or government office (e.g., National Transportation Safety Administration). "Hybrid decentralized" or "hybrid decentralized" refers to a situation in which a subject or patient collects a sample at their residence and / or workplace and ships the sample to a laboratory, avoiding a specialized collection site (e.g., hospital, doctors' office, or free-standing sample collection or research site, etc.).
[0044] As used herein, a "derivative" of an antibody may refer to an antibody that has one or more modifications to its amino acid sequence when compared to the original or parent antibody, and may exhibit a modified domain structure. A derivative may not only adopt an amino acid sequence capable of specifically binding to a target (antigen), but may further adopt the typical domain configuration found in a natural antibody. Typical examples of antibody derivatives are antibodies coupled to other polypeptides, rearranged antibody domains or antibody fragments. A derivative may also comprise at least one further compound, e.g. a protein domain, which is linked by covalent or non-covalent bonds. Linking may be based on gene fusion according to methods known in the art. The further domain present in a fusion protein comprising an antibody may preferably be linked by a flexible linker, advantageously a peptide linker, which comprises multiple, hydrophilic, peptide-linked amino acids of sufficient length to span the distance between the C-terminus of the further protein domain and the N-terminus of the antibody or vice versa. The antibody may have a conformation suitable for biological activity or may be linked to an effector molecule that selectively binds, for example, a solid support, a biologically active substance (e.g., a cytokine or growth hormone), a chemical agent, a peptide, a protein, or a drug.
[0045] As used herein, "bispecific antibody" is used to refer to a full-length antibody (see PCT Publication No. 02 / 02773) that can bind to two different antigens (or epitopes) in each of its two binding arms (HC / LC pair). Thus, a bispecific binding protein has two identical antigen-binding arms with identical specificity and identical CDR sequences, and is bivalent for each antigen to which it binds.
[0046] As used herein, "dual variable domain" is used to refer to two or more antigen-binding sites on a binding protein, which may be a bivalent binding protein (two antigen-binding sites), a tetravalent binding protein (four antigen-binding sites), or a multivalent binding protein. A DVD may be monospecific, i.e., capable of binding one antigen (or one specific epitope), or multispecific, i.e., capable of binding two or more antigens (i.e., two or more epitopes of the same target antigen molecule or two or more epitopes of different target antigens). A preferred DVD-binding protein comprises two heavy chain DVD polypeptides and two light chain DVD polypeptides and is referred to as a "DVD immunoglobulin" or "DVD-Ig". Such DVD-Ig binding proteins are thus tetrameric and similar to IgG molecules, but provide more antigen-binding sites than IgG molecules. Thus, each half of a tetrameric DVD-Ig molecule is similar to half of an IgG molecule and contains a heavy chain DVD polypeptide and a light chain DVD polypeptide, but unlike the heavy and light chain pair of an IgG molecule, which results in a single antigen-binding domain, the heavy and light chain pair of a DVD-Ig results in two or more antigen-binding sites.
[0047] Each antigen-binding site of a DVD-Ig binding protein may be derived from a donor ("parent") monoclonal antibody and may comprise a heavy chain variable domain (VH) and a light chain variable domain (VL) with the CDRs involved in binding to the antigen, a total of six CDRs per antigen-binding site. Thus, a DVD-Ig binding protein that binds to two different epitopes (i.e., two different epitopes on two different antigen molecules or two different epitopes on the same antigen molecule) comprises an antigen-binding site derived from a first parent monoclonal antibody and an antigen-binding site of a second parent monoclonal antibody.
[0048] The design, expression and characterization of DVD-Ig binding molecules are described in PCT Publication No. 2007 / 024715, U.S. Patent No. 7,612,181 and Wu et al., Nature Biotech., 25:1290-1297 (2007). A preferred example of such a DVD-Ig molecule comprises a heavy chain comprising the structural formula: VD1-(X1)n-VD2-C-(X2)n, where VD1 is a first heavy chain variable domain, VD2 is a second heavy chain variable domain, C is a heavy chain constant domain, X1 is a linker, provided that it is not CH1, X2 is an Fc region, and n is 0 or 1, preferably 1; and a light chain comprising the structural formula: VD1-(X1)n-VD2-C-(X2)n, where VD1 is a first light chain variable domain, VD2 is a second light chain variable domain, C is a light chain constant domain, X1 is a linker, provided that it is not CH1, X2 does not comprise an Fc region, and n is 0 or 1, preferably 1. Such a DVD-Ig can include two such heavy chains and two such light chains, where each chain includes a variable domain linked in tandem with no intervening constant region between the variable domains, where the heavy and light chains can associate to form a functional antigen binding site in tandem, and where a pair of heavy and light chains can associate with another pair of heavy and light chains to form a tetrameric binding protein with four functional antigen binding sites. In another example, a DVD-Ig molecule can include heavy and light chains including three variable domains (VD1, VD2, VD3), each linked in tandem with no intervening constant region between the variable domains, where the pair of heavy and light chains can associate to form three antigen binding sites, and where a pair of heavy and light chains can associate with another pair of heavy and light chains to form a tetrameric binding protein with six antigen binding sites.
[0049] In a preferred embodiment, a DVD-Ig binding protein not only binds to the same target molecule that its parent monoclonal antibodies bind, but also retains one or more desired properties of one or more of its parent monoclonal antibodies. Preferably, such additional properties are one or more antibody parameters of the parent monoclonal antibodies. Antibody parameters that can be contributed to a DVD-Ig binding protein derived from one or more of its parent monoclonal antibodies include, but are not limited to, antigen specificity, antigen affinity, potency, biological function, epitope recognition, protein stability, protein solubility, production efficiency, immunogenicity, pharmacokinetics, bioavailability, tissue cross-reactivity, and binding to orthologous antigens.
[0050] DVD-Ig binding proteins bind to at least one epitope of UCH-L1, GFAP, or UCH-L1 and GFAP. Non-limiting examples of DVD-Ig binding proteins include (1) DVD-Ig binding proteins that bind to one or more epitopes of UCH-L1, DVD-Ig binding proteins that bind to an epitope of human UCH-L1 and an epitope of UCH-L1 of another species (e.g., mouse), and DVD-Ig binding proteins that bind to an epitope of human UCH-L1 and an epitope of another target molecule; (2) DVD-Ig binding proteins that bind to one or more epitopes of GFAP, DVD-Ig binding proteins that bind to an epitope of human GFAP and an epitope of GFAP of another species (e.g., mouse). or (3) a DVD-Ig binding protein that binds to one or more epitopes of UCH-L1 and GFAP, a DVD-Ig binding protein that binds to an epitope of human UCH-L1, human GFAP and an epitope of UCH-L1 of another species (e.g., mouse), and a DVD-Ig binding protein that binds to an epitope of human UCH-L1, human GFAP and an epitope of another target molecule.
[0051] "Epitope" or "epitopes" or "epitope of interest" refers to a site on any molecule that can be recognized and bind to a complementary site on its specific binding partner. The molecule and specific binding partner are part of a specific binding pair. For example, an epitope can be on a polypeptide, a protein, a hapten, a carbohydrate antigen (such as, but not limited to, a glycolipid, glycoprotein, or lipopolysaccharide), or a polysaccharide. The specific binding partner can be, but is not limited to, an antibody.
[0052] As used herein, "Fab (fragment antigen-binding) fragment" or "Fab fragment" refers to a fragment of an antibody that binds to an antigen and contains one complete light chain and part of one heavy chain, which is one antigen-binding site. Fab is a monovalent fragment consisting of the VL, VH, CL and CH1 domains. Fab is composed of one constant domain and one variable domain of each heavy and light chain. The variable domain contains a paratope (antigen-binding site) that includes a set of complementarity determining regions at the amino terminus of the monomer. Thus, each arm of the Y binds to an epitope on the antigen. Fab fragments can be produced as described in the art, for example, using papain, an enzyme that can be used to cleave an immunoglobulin monomer into two Fab fragments and an Fc fragment, or can be produced by recombinant means.
[0053] As used herein, "F(ab')2 fragment" refers to an antibody generated by pepsin digestion of a whole IgG antibody, removing most of the Fc region while leaving part of the hinge region intact. The F(ab')2 fragment is a bivalent fragment with two antigen-binding F(ab) portions linked together by disulfide bonds, resulting in a molecular weight of approximately 110 kDa. Bivalent antibody fragments (F(ab')2 fragments) are smaller than whole IgG molecules, allowing better tissue penetration and thus facilitating better antigen recognition in immunohistochemistry. The use of F(ab')2 fragments also avoids non-specific binding to Fc receptors or protein A / G on live cells. The F(ab')2 fragments can bind and precipitate antigens.
[0054] As used herein, "framework" (FR) or "framework sequence" may refer to the remaining sequence of the variable region, excluding the CDRs. The exact definition of the CDR sequence may be determined by different systems (see, for example, above), and the meaning of the framework sequence is subject to different interpretations accordingly. The six CDRs (CDR-L1, CDR-L2, and CDR-L3 of the light chain and CDR-H1, CDR-H2, and CDR-H3 of the heavy chain) also divide the framework regions on the light and heavy chains into four subregions (FR1, FR2, FR3, and FR4) on each chain, where CDR1 is located between FR1 and FR2, CDR2 is located between FR2 and FR3, and CDR3 is located between FR3 and FR4. As mentioned by others, if a particular subregion is not specified as FR1, FR2, FR3, or FR4, the framework region represents the combination of FRs in the variable region of a single, naturally occurring immunoglobulin chain. As used herein, FR refers to one of the four subregions, and FR refers to two or more of the four subregions that make up a framework region.
[0055] Human heavy and light chain FR sequences are known in the art that can be used as heavy and light chain "acceptor" framework sequences (or simply, "acceptor" sequences) to humanize non-human antibodies using techniques known in the art. In one embodiment, the human heavy and light chain acceptor sequences are selected from framework sequences listed in publicly available databases, such as V-base (hypertext transferprotocol: / / vbase.mrc-cpe.cam.ac.uk / ) or the international ImMunoGeneTics® (IMGT®) information system (hypertext transferprotocol: / / imgt.cines.fr / texts / IMGTrepertoire / LocusGenes / ).
[0056] As used herein, a "functional antigen-binding site" can refer to a site on a binding protein (e.g., an antibody) that can bind to a target antigen. The antigen-binding affinity of an antigen-binding site may not be as strong as that of the parent binding protein, e.g., the parent antibody, from which the antigen-binding site is derived, but the ability to bind to an antigen must be measurable using any one of a variety of known methods for assessing antigen-binding proteins, e.g., antibodies. Furthermore, the antigen-binding affinity of each of the antigen-binding sites of a multivalent protein, e.g., a multivalent antibody herein, does not need to be quantitatively the same.
[0057] "GFAP" is used herein to describe glial fibrillary acidic protein. GFAP is a protein that is encoded by the GFAP gene in humans and GFAP gene counterparts in other species, and can be produced (e.g., in other species by recombinant means).
[0058] "GFAP status" can mean either the level or amount of GFAP at a point in time (such as by a single measure of GFAP), the level or amount of GFAP in relation to monitoring (such as by repeated testing in a subject to identify increases or decreases in GFAP amounts), the level or amount of GFAP in relation to treatment for traumatic brain injury (whether primary brain injury and / or secondary brain injury), or a combination thereof.
[0059] As used herein, "Glasgow Coma Scale" or "GCS" refers to a 15-point scale (described, for example, in 1974 by Graham Teasdale and Bryan Jennett, Lancet 1974;2:81-4) that provides a practical method for assessing impairment in level of consciousness in patients who have suffered brain injury. The test measures best motor response, verbal response and eye opening response with these values: I. best motor response (6: follows two-part request; 5: brings hand to head / neck stimulus above clavicle; 4: arm bent sharply at elbow but not primarily abnormal in character; 3: arm bent at elbow, clearly primarily abnormal in character; 2: arm extended at elbow; 1: no arm / leg movement, no interfering factors; NT: paralyzed or other limiting factors); II. verbal response (5: gives name, place and date correctly; 4: disoriented but communicates coherently; 3: understandable words; 2: moans / growls only; 1: no audible response, no interfering factors; NT: factors impeding communication) and III. eyes open (4: open before stimulus; 3: after verbal or shouted request; 2: after fingertip stimulus; 1: eyes not open at any time, no interfering factors; NT: closed due to local factors). The final score is determined by adding the values of I + II + III. If the GCS score is 13-15, the subject is considered to have mild TBI. If the GCS score is 9-12, the subject is considered to have moderate TBI. If the GCS score is 8 or less, typically 3-8, the subject is considered to have severe TBI.
[0060] As used herein, "Glasgow Outcome Scale" refers to a global scale for functional outcome that grades a patient's condition into one of five categories: death, vegetative state, severe disability, moderate disability, or good recovery. "Extended Glasgow Outcome Scale" or "GOSE", used interchangeably herein, provides a more detailed classification into eight categories by subdividing the severe disability, moderate disability, and good recovery categories into upper and lower categories as shown in Table 1.
[0061] [Table 1]
[0062] As used herein, "humanized antibody" is used to describe an antibody that contains heavy and light chain variable region sequences derived from a non-human species (e.g., mouse), but where at least a portion of the VH and / or VL sequences have been altered to be more "human-like", i.e., more similar to human germline variable sequences. A "humanized antibody" is an antibody or variant, derivative, analog or fragment thereof that immunospecifically binds to an antigen of interest and contains a framework (FR) region that has substantially the amino acid sequence of a human antibody and a complementarity determining region (CDR) that has substantially the amino acid sequence of a non-human antibody. As used herein, the term "substantially" in the context of a CDR refers to a CDR that has an amino acid sequence that is at least 80%, at least 85%, at least 90%, at least 95%, at least 98% or at least 99% identical to the amino acid sequence of the non-human antibody CDR. A humanized antibody comprises substantially all of at least one, but typically two, variable domains (Fab, Fab', F(ab')2, FabC, Fv) in which all or substantially all of the CDR regions correspond to those of a non-human immunoglobulin (i.e., donor antibody) and all or substantially all of the framework regions are those of a human immunoglobulin consensus sequence. In certain embodiments, the humanized antibody also comprises at least a portion of an immunoglobulin constant region (Fc), typically the Fc region of a human immunoglobulin. In some embodiments, the humanized antibody contains at least the variable domain of the heavy chain as well as the light chain. The antibody may also contain the CH1, hinge, CH2, CH3 and CH4 regions of the heavy chain. In some embodiments, the humanized antibody contains only a humanized light chain. In some embodiments, the humanized antibody contains only a humanized heavy chain. In specific embodiments, the humanized antibody contains only humanized variable domains of the light chain and / or humanized heavy chain.
[0063] The humanized antibody may be selected from any class of immunoglobulins, including IgM, IgG, IgD, IgA, and IgE, and any isotype, including, without limitation, IgG1, IgG2, IgG3, and IgG4. The humanized antibody may comprise sequences from more than one class or isotype, and particular constant domains may be selected to optimize desired effector functions, using techniques well known in the art.
[0064] The framework regions and CDRs of a humanized antibody need not correspond exactly to the parental sequences, for example, the donor antibody CDR or consensus framework may be mutagenized by substitution, insertion and / or deletion of at least one amino acid residue such that the CDR or framework residue at this site does not correspond to the donor antibody or consensus framework. However, in a preferred embodiment, such mutations are not extensive mutations. Typically, at least 80%, preferably at least 85%, more preferably at least 90%, and most preferably at least 95% of the humanized antibody residues correspond to the residues of the parental FR and CDR sequences. The term "consensus framework" as used herein refers to a framework region within a consensus immunoglobulin sequence. The term "consensus immunoglobulin sequence" as used herein refers to a sequence formed from the most frequently occurring amino acids (or nucleotides) in a family of related immunoglobulin sequences (see, for example, Winnaker, "From Genes to Clones" (Verlagsgesellschaft, Weinheim, 1987)). Thus, a "consensus immunoglobulin sequence" may comprise a "consensus framework region" and / or a "consensus CDR." Within a family of immunoglobulins, each position within a consensus sequence is occupied by the amino acid that occurs most frequently at that position within the family. If two amino acids occur equally frequently, either may be included within the consensus sequence.
[0065] "Identical" or "identity" as used herein in the context of two or more polypeptide or polynucleotide sequences may mean that the sequences have a specified percentage of residues that are the same over a specified region. The percentage may be calculated by optimally aligning the two sequences, comparing the two sequences over a specified region, determining the number of positions in both sequences where identical residues occur to determine the number of matched positions, dividing the number of matched positions by the total number of positions in the specified region, and multiplying the result by 100 to determine the percentage of sequence identity. If the two sequences are of different length or the alignment results in one or more sticky ends and the specified comparison region includes only a single sequence, the residues of the single sequence are included in the denominator of the calculation, but not in the numerator.
[0066] The term "immunoassay" as used herein refers to a biochemical test that measures the presence or concentration of a macromolecule or a small molecule in a solution by using an antibody or an antigen. Any suitable immunoassay may be used, and a wide variety of immunoassay types, configurations and formats are known in the art and are within the scope of the present disclosure. Suitable types of immunoassays include, but are not limited to, enzyme-linked immunosorbent assay (ELISA), lateral flow assay, competitive inhibition immunoassay (e.g., forward and reverse), radioimmunoassay (RIA), fluoroimmunoassay (FIA), chemiluminescence immunoassay (CLIA), counting immunoassay (CIA), enzyme multiplexed immunoassay technique (EMIT), one-step antibody detection assay, homogeneous assay, heterogeneous assay, capture on the fly assay, single molecule detection assay, and the like. Such methods are disclosed, for example, in U.S. Pat. Nos. 6,143,576; 6,113,855; 6,019,944; 5,985,579; 5,947,124; 5,939,272; 5,922,615; 5,885,527; 5,851,776; 5,824,799; 5,679,526; 5,525,524; and 5,480,792; International Patent Application Publication Nos. WO2016 / 161402 and WO2016 / 161400; and Adamczyk et al., Anal. Chim. Acta, 579(1):61-67 (2006).
[0067] Immunoassay formats can be "direct" or "indirect" "sandwich". Sandwich formats involve the use of capture and detection antigens to immobilize and detect antigens in a sample. Specifically, the surface of a solid support (e.g., ELISA plate, beads, etc.) is coated with a capture antibody or an antigen-binding fragment thereof, which binds to and immobilizes the target antigen present in a sample applied thereto. A detection antibody is then added or contacted with the complex. The detection antibody can be directly labeled with the antibody to allow detection and quantification of the antigen ("direct sandwich immunoassay"). Alternatively, if the detection antibody is not labeled, a secondary enzyme-conjugated detection antibody can be used ("indirect sandwich assay").
[0068] Thus, the disclosed methods can further include contacting the sample with a conjugate comprising a second antibody, where the second antibody or an antigen-binding fragment or portion thereof of the conjugate specifically binds to the target antigen (e.g., GFAP, UCH-L1 derived protein, or a fragment or epitope thereof), thereby resulting in linkage of the conjugate to the captured analyte and formation of an immunosandwich (also referred to herein as an "immunosandwich complex"). In a sandwich immunoassay format, it is recognized that the first and second antibodies recognize two different, non-overlapping epitopes on the target analyte / antigen.
[0069] As used herein, the term "immunochromatographic test(s)" (ICT) refers to an assay or test that includes a cartridge(s) or strip(s) (typically single-use and / or disposable) that produces a detectable (e.g., colored, etc.) end product that can be interpreted as positive or negative. Immunochromatographic tests typically rely on the capture of a target analyte (e.g., antigen and / or antibody) from a biological sample. The assay or test utilizes a first specific binding member (e.g., antigen and / or antibody) mounted on a test strip (test zone) as an immobilized capture specific binding member. Capillary flow is used to migrate a detectably labeled second specific binding member conjugate, which binds to the target analyte in the mobile phase as it migrates toward the capture first specific binding member in the immobile phase. A positive test result is produced by the capture of the migrating labeled second specific binding member complex by the first immobilized specific binding member in the test zone and the formation of a colored line or pattern. One example of an ICT is a lateral flow assay.
[0070] "Head injury" or "head injury", used interchangeably herein, refers to any trauma to the scalp, skull, or brain. Such injury may include only a minor bump on the head, or may be a severe brain injury. Such injury includes primary injury to the brain and / or secondary injury to the brain. Primary brain injury occurs during the initial insult and results from the displacement of the brain's physical structures. More specifically, primary brain injury is physical damage to the parenchyma (tissue, blood vessels) that occurs during the traumatic event, resulting in shearing and compression of the surrounding brain tissue. Secondary brain injury occurs subsequent to the primary injury and may involve a series of cellular processes. More specifically, secondary brain injury refers to changes that develop over a period of time (hours to days) following the primary brain injury. Secondary brain injury includes a whole cascade of cellular, chemical, tissue, or vascular changes in the brain that contribute to further destruction of brain tissue.
[0071] Injuries to the head can be closed or open (penetrating). A closed head injury is a trauma to the scalp, skull, or brain without the penetration of the skull by an impacting object. An open head injury is a trauma to the scalp, skull, or brain with the penetration of the skull by an impacting object. Head injuries can be caused by physical shaking of a person, by external mechanical or other forces resulting in closed or open head injuries (vehicle accidents such as with a car, plane, train, etc.; blows to the head such as with a baseball bat or from a firearm), cerebrovascular accidents (e.g., strokes), one or more falls (e.g., during sports or other activities), blunt impact from an explosion or blast (collectively, "blast injuries"), and by other types of blunt force trauma. Alternatively, head injuries can be caused by ingestion of and / or exposure to chemicals, toxins, or combinations of chemicals and toxins. Examples of such chemicals and / or toxins include fire, mold, asbestos, pesticides and insecticides, organic solvents, paints, adhesives, gases (such as carbon monoxide, hydrogen sulfide, and cyanide), organometallics (such as methylmercury, tetraethyl lead, and organotins), and / or one or more drugs of abuse. Alternatively, head injury may result from a subject suffering from an autoimmune disease, metabolic disorder, brain tumor, hypoxia, viral infection (e.g., SARS-CoV-2), fungal infection, bacterial infection, meningitis, hydrocephalus, or any combination thereof. In some cases, it is not possible to ascertain whether any such event or injury has occurred or occurred. For example, there may be no medical history for the patient or subject, the subject may be unable to speak, the subject may be aware of what event the subject has been exposed to, etc. Such situations are described herein as a subject "possibly having suffered a head injury" or as a "suspected injury." In certain embodiments herein, closed head injury does not include, and specifically excludes, cerebrovascular accidents, such as stroke.
[0072] As used herein, an "isolated polynucleotide" can mean a polynucleotide that, by its origin, is not associated with all or a portion of a polynucleotide with which the "isolated polynucleotide" is found in nature; that is operably linked to a polynucleotide with which it is not linked in nature; or that does not exist in nature as part of a larger sequence (e.g., by genomic, cDNA, or synthetic origin, or a combination of portions thereof).
[0073] As used herein, "label" and "detectable label" refer to a moiety attached to an antibody or analyte such that the reaction of the antibody with the analyte can be detected, and the antibody or analyte so labeled is said to be "detectably labeled". The label may provide a signal detectable by visual or instrumental means. Various labels include signal generators such as chromogens, fluorescent compounds, chemiluminescent compounds, radioactive compounds, and the like. Representative examples of labels include moieties that provide light, e.g., acridinium compounds, and moieties that provide fluorescence, e.g., fluorescein. Other labels are also described herein. In this regard, the moiety itself may not be detectable, but may become detectable upon reaction with yet another moiety. The term "detectably labeled" is intended to encompass such labels. Any suitable detectable label known in the art may be used.
[0074] A "lateral flow device" or "test device," used interchangeably herein, refers to a device that allows for lateral flow detection of biomarkers immobilized on a substrate (e.g., a test strip, a membrane, an absorbent pad (e.g., a wicking pad), etc.) using a specific binding agent. Described herein are exemplary lateral flow devices and methods of using such devices that allow for efficient lateral flow detection of GFAP, UCH-L1, and / or GFAP and UCH-L1 immobilized on a substrate using a specific binding agent (e.g., an anti-GFAP antibody, an anti-UCH-L1 antibody, or an anti-GFAP and anti-UCH-L1 antibody).
[0075] A "linking sequence" or "linking peptide sequence" refers to a naturally occurring or artificial polypeptide sequence connected to one or more polypeptide sequences of interest (e.g., full length sequences, sequence fragments, etc.). The term "connected" refers to the joining of the linking sequence to the polypeptide sequence of interest. Such polypeptide sequences are preferably joined by one or more peptide bonds. The linking sequence may have a length of about 4 to about 50 amino acids. Preferably, the length of the linking sequence is about 6 to about 30 amino acids. A naturally occurring linking sequence may be modified by amino acid substitution, addition, or deletion to create an artificial linking sequence. Linking sequences may be used for many purposes, including use in recombinant Fab. Exemplary linking sequences include, but are not limited to: (i) histidine (His) tags, such as a 6×His tag, having an amino acid sequence of HHHHHH (SEQ ID NO: 3), are useful as linking sequences to facilitate isolation and purification of polypeptides and antibodies of interest; (ii) enterokinase cleavage sites, such as a His tag, are used in the isolation and purification of proteins and antibodies of interest. Enterokinase cleavage sites are often used in conjunction with His tags in the isolation and purification of proteins and antibodies of interest. A variety of enterokinase cleavage sites are known in the art. An example of an enterokinase cleavage site includes, but is not limited to, the amino acid sequence of DDDDK (SEQ ID NO: 4) and derivatives thereof (e.g., ADDDDK (SEQ ID NO: 5) and the like; (iii) other sequences may also be used to link or connect the light chain variable regions and / or heavy chain variable regions of the single chain variable region fragment. Other examples of linking sequences may be found in Bird et al., Science, 242:423-426 (1988); Huston et al., PNAS USA 85:5879-5883 (1988) and McCafferty et al., Nature, 348:552-554 (1990). Linking sequences may also be modified for additional functions, such as conjugation of drugs or conjugation to solid supports. In the context of the present disclosure, a monoclonal antibody may contain a linking sequence, such as, for example, a His tag, an enterokinase cleavage site, or both.
[0076] As used herein, "monoclonal antibody" refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e., the individual antibodies that make up the population are identical, except for possible natural mutations that may be present in minor amounts. Monoclonal antibodies are highly specific and are made against a single antigen (although, for example, cross-reactivity or shared reactivity may occur). Furthermore, in contrast to polyclonal antibody preparations, which typically contain different antibodies directed against different determinants (epitopes), each monoclonal antibody is directed against a single determinant on the antigen. Monoclonal antibodies herein include, inter alia, "chimeric" antibodies in which a portion of the heavy and / or light chain is identical or homologous to corresponding sequences in antibodies from a particular species or belonging to a particular antibody class or subclass, while the remainder of the chains is identical or homologous to corresponding sequences in antibodies from another species or belonging to another antibody class or subclass, as well as fragments of such antibodies, so long as they exhibit the desired biological properties.
[0077] "Magnetic Resonance Imaging" or "MRI," as used interchangeably herein, refers to a medical imaging technique (e.g., referred to interchangeably herein as "MRI," "MRI procedure," or "MRI exam") used in radiology to produce images of the anatomy and physiological processes of the body, both in health and disease. MRI is a form of medical imaging that measures the response of atomic nuclei in body tissues to radio frequency radio waves when placed in a strong magnetic field, producing images of internal organs. MRI scanners are based on the science of nuclear magnetic resonance (NMR) and use strong magnetic fields, radio waves, and field gradients to produce images of the inside of the body.
[0078] As used herein, "multivalent binding protein" is used to refer to a binding protein that contains two or more antigen-binding sites (also referred to herein as "antigen-binding domains"). Multivalent binding proteins are preferably engineered to have three or more antigen-binding sites and are generally not naturally occurring antibodies. The term "multispecific binding protein" refers to binding proteins that can bind to two or more related or unrelated targets, including binding proteins capable of binding to two or more different epitopes of the same target molecule.
[0079] As used herein, "proximal end" refers to the end of a test device or test strip that includes the sample application opening of a test device and / or the sample application zone of a test strip.
[0080] "Recombinant antibody" and "recombinant antibodies" refer to antibodies prepared by recombinant methods, by one or more steps including cloning a nucleic acid sequence encoding all or a portion of one or more monoclonal antibodies into a suitable expression vector, and then expressing the antibody in a suitable host cell. The terms include, but are not limited to, recombinantly produced monoclonal antibodies, chimeric antibodies, humanized antibodies (fully or partially humanized antibodies), multispecific or multivalent structures formed from antibody fragments, bifunctional antibodies, heteroconjugate Abs, DVD-Ig®, and other antibodies described in (i) herein (dual variable domain immunoglobulins and methods for making them are described in Wu, C. et al., Nature Biotechnology, 25:1290-1297 (2007)). The term "bifunctional antibody" as used herein refers to an antibody that contains a first arm that has specificity for one antigenic site and a second arm that has specificity for a different antigenic site, i.e., a bifunctional antibody has dual specificity.
[0081] As used herein, a "result" refers to an item of information obtained by performing an assay. In one embodiment, the result is the amount of a biomarker (e.g., UCH-L1, GFAP, or any combination thereof) in a test sample. In another embodiment, the result is an identification of the presence of a biomarker (e.g., UCH-L1, GFAP, or any combination thereof) in a sample. In some embodiments, the result is displayed as a numerical value, e.g., obtained by use of a reading device or reader. In other embodiments, the result is displayed visually (e.g., as a colored line).
[0082] As used herein, "risk assessment," "risk classification," "risk identification," or "risk stratification" of a subject (e.g., patient) refers to the assessment of factors, including biomarkers, to predict the risk of developing a future event, including disease onset or disease progression, so that treatment decisions for the subject can be made on a more informed, condition-based basis.
[0083] As used herein, "sample," "test sample," "specimen," "sample from a subject," and "patient sample" may be used interchangeably and may be a sample of blood, e.g., whole blood (including, e.g., capillary blood, venous blood, mixed samples of venous and capillary blood, mixed samples of capillary blood and interstitial fluid, dried blood spots, etc.), tissue, urine, semen, serum, plasma, saliva, sweat, sputum, mucus, tears, lymph, amniotic fluid, lower respiratory tract specimens, such as, but not limited to, sputum, endotracheal aspirate or bronchoalveolar lavage, cerebrospinal fluid, placental cells or tissue, endothelial cells, leukocytes, or monocytes. The sample may be used directly as obtained from the patient or may be pretreated, such as by filtration, distillation, extraction, concentration, centrifugation, inactivation of interfering components, addition of reagents, and the like, to modify the characteristics of the sample in some manner, as described herein or otherwise known in the art.
[0084] A variety of cell types, tissues or body fluids can be utilized to obtain samples. Such cell types, tissues and body fluids can include sections of tissue, e.g., biopsy and autopsy samples, oropharyngeal specimens, nasopharyngeal specimens, nasal mucus specimens, frozen sections taken for histological purposes, blood (whole blood, capillary blood, venous blood, mixed samples of venous and capillary blood, mixed samples of capillary blood and interstitial fluid, dried blood spots, etc.), plasma, serum, red blood cells, platelets, anal samples (e.g., anal swab specimens), interstitial fluid, cerebrospinal fluid, etc. Cell types and tissues can also include lymphatic fluid, cerebrospinal fluid, or any body fluid collected by aspiration. Tissues or cell types can be provided by removing samples of cells from humans and non-human animals, but may also be achieved by using previously isolated cells (e.g., isolated by another person, at another time, and / or for another purpose). Archival tissues, e.g., tissues with a history of treatment or outcome, may be used. Protein or nucleotide isolation and / or purification may not be necessary. In some embodiments, the sample is a whole blood sample. In some embodiments, the sample is a capillary blood sample. In some embodiments, the sample is a dried blood spot. In some embodiments, the sample is a serum sample. In still other embodiments, the sample is a plasma sample. In some embodiments, the sample is an oropharyngeal specimen. In other embodiments, the sample is a nasopharyngeal specimen. In other embodiments, the sample is sputum. In other embodiments, the sample is an endotracheal aspirate. In still other embodiments, the sample is bronchoalveolar lavage. In still other embodiments, the sample is mucus. In still other embodiments, the sample is saliva. In still further embodiments, the sample is urine.
[0085] As used herein, "sample application aperture" refers to the portion of a test device where an opening in the test device provides access to the sample application zone of a test strip.
[0086] A "sample application zone" is the portion of a test strip where the sample is applied. In some embodiments, a "sample pad" comprises a sample application zone.
[0087] "Sensitivity" refers to the proportion of subjects with a positive outcome who are correctly identified as positive (e.g., correctly identifying a subject who has the disease or medical condition for which the subject is being tested). For example, this can include correctly identifying a subject as having a TBI separately from subjects who do not have TBI, correctly identifying a subject with a moderate, severe, or moderate-severe TBI separately from subjects who have a mild TBI, correctly identifying a subject as having a mild TBI separately from subjects who have a moderate, severe, or moderate-severe TBI, correctly identifying a subject as having a moderate, severe, or moderate-severe TBI separately from subjects who do not have TBI, or correctly identifying a subject as having a mild TBI from subjects who do not have TBI, etc.
[0088] As used herein, the "specificity" of an assay refers to the proportion of subjects whose outcome is negative who are correctly identified as negative (e.g., the proportion of subjects who correctly identify that they do not have the disease or medical condition for which they are being tested). For example, this can include correctly identifying subjects who have TBI as distinct from subjects who do not have TBI, correctly identifying subjects who do not have moderate, severe, or moderate-severe TBI as distinct from subjects who have mild TBI, correctly identifying subjects who do not have mild TBI as distinct from subjects who have moderate, severe, or moderate-severe TBI, or correctly identifying subjects who do not have any TBI, or correctly identifying subjects who have mild TBI as distinct from subjects who do not have TBI, etc.
[0089] As used herein, "specific binding" or "specifically binding to" can refer to the interaction of an antibody, protein, or peptide with a second chemical species, where the interaction is dependent on the presence of a particular structure (e.g., an antigenic determinant or epitope) on the chemical species; for example, an antibody recognizes and binds to a specific protein structure, rather than proteins in general. If an antibody is specific for epitope "A", then the presence of a molecule containing epitope A (or free A, unlabeled A) in a reaction containing labeled "A" and the antibody will reduce the amount of labeled A bound to the antibody.
[0090] A "specific binding partner" is a member of a specific binding pair. A specific binding pair includes two different molecules that specifically bind to each other through chemical or physical means. Thus, in addition to the typical immunoassay specific binding pair of antigen and antibody, other specific binding pairs can include biotin and avidin (or streptavidin), carbohydrates and lectins, complementary nucleotide sequences, effector and receptor molecules, cofactors and enzymes, enzymes and enzyme inhibitors, and the like. Furthermore, specific binding pairs can include members that are analogs of the original specific binding member, e.g., analyte analogs. Immunoreactive specific binding members include antigens, antigen fragments, and monoclonal and polyclonal antibodies, as well as antibodies, including complexes and fragments thereof, whether isolated or recombinantly produced.
[0091] "Statistically significant" as used herein refers to the likelihood that a relationship between two or more variables is caused by something other than random chance. Statistical hypothesis testing is used to determine whether the results of a data set are statistically significant. In statistical hypothesis testing, a statistically significant result is reached whenever the observed p-value for the test statistic is less than the significance level defined for the study. The p-value is the probability of obtaining a result at least as extreme as the result observed if the null hypothesis is true. Examples of statistical hypothesis analysis include Wilcoxon's matched rank test, t-test, chi-square test, or Fisher's exact test. "Significant" as used herein refers to a change that has not been determined to be statistically significant (e.g., may not have been subjected to statistical hypothesis testing).
[0092] As used interchangeably herein, "subject" and "patient" refer to any vertebrate, including, but not limited to, mammals (e.g., cows, pigs, camels, llamas, horses, goats, rabbits, sheep, hamsters, guinea pigs, cats, dogs, rats and mice, non-human primates (e.g., monkeys such as cynomolgus or rhesus monkeys, chimpanzees) and humans). In some embodiments, the subject can be human or non-human. In some embodiments, the subject is human. The subject or patient may be undergoing other forms of treatment. In some embodiments, the subject is a human who may be undergoing other forms of treatment. In some embodiments, the subject is a subject that is a helper to humans, such as a horse, dog, or other species that assists humans in performing their daily tasks (e.g., companion animals) or duties (e.g., service animals).
[0093] As used herein, a "test strip" can include one or more bibulous or non-bibulous materials. When a test strip includes two or more materials, the two or more materials are preferably in fluid communication. One material of the test strip can be overlaid on another material of the test strip, such as filter paper overlaid on nitrocellulose. Alternatively or in addition, the test strip can include a region containing one or more materials followed by a region containing one or more different materials. In this case, the regions are in fluid communication and may or may not overlap each other. Suitable materials for test strips include, but are not limited to, cellulose-derived materials, such as filter paper, chromatography paper, nitrocellulose and cellulose acetate, as well as materials made of glass fiber, nylon, polyethylene terephthalate (e.g., DACRON brand polymers), PVC, polyacrylamide, cross-linked dextran, agarose, polyacrylate, ceramic materials, and others. The material or materials of the test strip can be optionally treated to modify its capillary flow characteristics or the characteristics of the applied sample. For example, the sample application area of a test strip may be treated with a buffer to correct the pH, salt concentration, or specific gravity of the applied sample to optimize test conditions.
[0094] The material(s) may be a unitary structure, such as a sheet cut into strips, or may be several strips or particulate material bound to a support or solid surface, such as those found in thin layer chromatography, with an absorbent pad as an integral part or in liquid contact. The material may be a sheet with lanes thereon that can be spotted to induce lane formation, and a separate assay can be performed in each lane. The material may have a rectangular, circular, elliptical, triangular or other shape, provided that there is at least one direction of traversal of the test solution by capillary migration. Other directions of traversal may occur, such as in an elliptical or circular piece contacted with the test solution in the center. The main consideration, however, is that there is at least one direction of flow toward a given site.
[0095] If a support is desired or necessary, the support for the test strip is usually water-insoluble, often non-porous and rigid, but may be elastic, usually hydrophobic and porous, and usually of the same length and width as the strip, but may be larger or smaller. The support material may be transparent, and when the test device of the present disclosure is assembled, the transparent support material forms a protective layer over the test strip, where it can be viewed by the user on the side of the test strip, as it may be exposed to the outside environment, such as by an opening in the front of the test device. A wide variety of mobile and non-mobile materials, both natural and synthetic, and combinations thereof, may be used, provided only that the support does not interfere with the capillary action of the material(s) or non-specifically bind to the assay components or interfere with the signal producing system. Illustrative polymers include polyethylene, polypropylene, poly(4-methylbutene), polystyrene, polymethacrylate, poly(ethylene terephthalate), nylon, poly(butyl butyrate), glass, ceramics, metals, and others. The elastic substrate may be made of polyurethane, neoprene, latex, silicone rubber, and others.
[0096] As used herein, "treating", "treating" or "treatment" are used interchangeably to describe, respectively, preventing, alleviating or inhibiting the progression of a disease and / or injury or one or more symptoms of such disease to which such term applies. Depending on the subject's condition, the term also refers to preventing disease, including preventing the onset of a disease or preventing symptoms associated with a disease. Treatment can be performed acutely or chronically. The term also refers to reducing the severity of a disease or symptoms associated with such disease prior to contraction of the disease. Such prevention or reduction of the severity of a disease prior to contraction refers to administration of a pharmaceutical composition to a subject not suffering from the disease at the time of administration. "Preventing" also refers to preventing the recurrence of a disease or one or more symptoms associated with such disease. "Treatment" and "therapeutically" refer to the act of treating, where "treating" is as defined above.
[0097] "Traumatic brain injury" or "TBI", used interchangeably herein, refers to a complex injury with a wide range of symptoms and disability. TBI is most often an acute event that resembles other injuries. TBI can be classified as "mild", "moderate", "moderate-severe", or "severe". Causes of TBI are diverse and include, for example, physical shaking by a person, automobile accidents, injuries from weapons, cerebrovascular accidents (e.g., strokes), falls, explosions or blasts, and other types of blunt force trauma. Other causes of TBI include ingestion of and / or exposure to one or more fires, chemicals or toxins, such as mold, asbestos, pesticides and insecticides, organic solvents, paints, glues, gases (such as carbon monoxide, hydrogen sulfide, and cyanides), organometallics (such as methylmercury, tetraethyl lead, and organotins), one or more addictive drugs, or combinations thereof. Alternatively, TBI may occur in subjects suffering from autoimmune diseases, metabolic disorders, brain tumors, hypoxia, viral infections (e.g., SARS-CoV-2, meningitis, etc.), fungal infections, bacterial infections (e.g., meningitis), hydrocephalus, or any combination thereof. Young adults and the elderly are the age groups at highest risk for TBI. In certain embodiments herein, traumatic brain injury or TBI does not include, and specifically excludes, cerebrovascular accidents such as stroke.
[0098] As used herein, "mild TBI" refers to head injury in which the subject may or may not experience loss of consciousness. In subjects who experience loss of consciousness, the loss of consciousness is typically brief, usually lasting only a few seconds or minutes. Mild TBI is also referred to as concussion, mild head trauma, mild TBI, mild brain injury, and mild head injury. MRI and CT scans are often normal, but individuals with mild TBI may have cognitive problems such as headaches, difficulty thinking, memory problems, attention deficits, mood swings, and frustration.
[0099] Mild TBI is the most common type of TBI and is often overlooked at the time of initial injury. Typically, subjects have a GCS score between 13-15 (such as 13-15 or 14-15). Of people with mild TBI, fifteen percent (15%) have symptoms that persist for three months or more. Common symptoms of mild TBI include fatigue, headache, visual impairment, memory loss, decreased attention / concentration, sleep disorders, vertigo / loss of balance, irritability (emotional disturbance), feelings of depression, and seizures. Other symptoms associated with mild TBI include nausea, loss of smell, sensitivity to light and sound, mood changes, confusion or confusion, and / or slowed thinking.
[0100] As used herein, "moderate TBI" refers to a brain injury in which loss of consciousness and / or confusion and disorientation occurs for 1-24 hours and the subject has a Glasgow Coma Scale (GCS) score between 9-13 (e.g., 9-12 or 9-13). Individuals with moderate TBI may have abnormal brain imaging results.
[0101] As used herein, "severe TBI" refers to brain injury in which loss of consciousness exceeds 24 hours, memory loss following injury or penetrating skull injury exceeds 24 hours, and subjects have a Glasgow Coma Scale (GCS) score between 3 and 8. Deficits range from high level cognitive impairment to coma. Survivors may have limited arm or leg function, speech or language abnormalities, loss of thinking skills, or emotional problems. Individuals with severe injuries may remain in a prolonged refractory state. For many people with severe TBI, prolonged rehabilitation is often required to maximize function and independence.
[0102] As used herein, "moderate-severe" TBI includes changes over time from moderate to severe TBI, and thus refers to a range of brain damage (e.g., over time) including moderate TBI alone, severe TBI alone, and combined moderate-severe TBI. For example, in some clinical situations, a subject may be initially diagnosed with a moderate TBI, but over time (minutes, hours, or days), the subject will have a severe TBI (e.g., in the setting of a cerebral hemorrhage). Alternatively, in some clinical situations, a subject may be initially diagnosed with a severe TBI, but over time (minutes, hours, or days), the subject will have a moderate TBI. Such subjects are considered examples of patients that can be classified as "moderate-severe." Common symptoms of moderate to severe TBI include problems with attention, concentration, distractibility, memory, processing speed, confusion, perseveration, impulsivity, language processing and / or "executive function", not understanding spoken words (receptive aphasia), difficulty speaking and being understood (expressive aphasia), slurred speech, very fast or very slow speech, problems reading, problems writing, interpreting touch, temperature, movement, limb position and fine discrimination, difficulties integrating or patterning sensory impressions into psychologically meaningful data, partial or total loss of vision, weak eye muscles and double vision (diplopia), blurred vision, difficulty judging distances. Problems with hearing, involuntary eye movements (nystagmus), light intolerance (photophobia), hearing problems such as reduced or lost hearing, ringing in the ears (tinnitus), hypersensitivity to sound, loss or diminished sense of smell (anosmia), loss or diminished sense of taste, convulsions associated with epilepsy, which can be of several types and may involve problems with consciousness, sensory perception or movement, bowel and bladder control, sleep disorders, loss of energy, changes in appetite, regulation of internal temperature, menstrual difficulties, addictive behaviors, problems with emotional capacity or stability, lack of motivation, irritability, aggression, depression, disinhibition, or cognitive deficits including denial / lack of consciousness. Subjects with moderate to severe TBI can have a Glasgow Coma Scale (GCS) score of 3 to 12 (including a range of 9 to 12 for moderate TBI and 3 to 8 for severe TBI).
[0103] "Ubiquitin carboxy-terminal hydrolase L1" or "UCH-L1," used interchangeably herein, refers to the deubiquitinating enzyme encoded by the UCH-L1 gene in humans and UCH-L1 gene counterparts in other species. UCH-L1, also known as ubiquitin carboxyl-terminal esterase L1 and ubiquitin thiolesterase, is a member of a gene family whose products hydrolyze small C-terminal appendages of ubiquitin to generate ubiquitin monomers.
[0104] "UCH-L1 status" can mean the level or amount of UCH-L1 at a point in time (such as a point in time involving a single measurement of UCH-L1), the level or amount of UCH-L1 associated with monitoring (such as monitoring involving repeated testing to identify increases or decreases in the amount of UCH-L1 in a subject), the level or amount of UCH-L1 associated with treatment for traumatic brain injury (whether primary brain injury and / or secondary brain injury), or a combination thereof.
[0105] As used herein, "variant" is used to describe a peptide or polypeptide that differs in amino acid sequence by insertion, deletion, or conservative substitution of amino acids, but retains at least one biological activity. Representative examples of "biological activity" include the ability to be bound by a specific antibody or the ability to stimulate an immune response. As used herein, variant is also used to describe a protein with an amino acid sequence that is substantially identical to a reference protein with an amino acid sequence that retains at least one biological activity. It is recognized in the art that conservative substitutions of amino acids, i.e., replacing an amino acid with a different amino acid that has similar properties (e.g., hydrophilicity, degree of charge, and distribution of charged regions), typically involve small changes. As understood in the art, these small changes can be identified, in part, by considering the hydrophobicity index of an amino acid (Kyte et al., J. Mol. Biol. 157:105-132 (1982)). The hydrophobicity index of an amino acid is based on a consideration of its hydrophobicity and charge. It is known in the art that amino acids with similar hydrophilicity indexes may be substituted and still retain protein function. In one embodiment, amino acids with hydrophobicity indexes of ±2 are substituted. The hydrophilicity of amino acids may also be used to identify substitutions that result in proteins that retain biological function. Consideration of the hydrophilicity of amino acids in the context of a peptide allows for the calculation of the maximum local average hydrophilicity of the peptide, a useful measure that has been reported to correlate well with antigenicity and immunogenicity (U.S. Pat. No. 4,554,101, incorporated herein by reference). Substitution with amino acids with similar hydrophilicity values may result in peptides that retain biological activity, such as immunogenicity as understood in the art. Substitutions may be made with amino acids with hydrophilicity values within ±2 of each other. Both the hydrophobicity index and hydrophilicity value of an amino acid are influenced by the particular side chain of the amino acid.Consistent with this observation is the understanding that amino acid substitutions that are compatible with biological function depend on the relative similarity of the amino acids, as revealed by hydrophobicity, hydrophilicity, charge, size and other properties, and in particular on the side chains of those amino acids. "Variants" may also be used to refer to antigenically reactive fragments of anti-UCH-L1 antibodies that differ in amino acid sequence from the corresponding fragments of anti-UCH-L1 antibodies, but that are still antigenically reactive and can compete with the corresponding fragments of anti-UCH-L1 antibodies for binding to UCH-L1. "Variants" may also be used to describe polypeptides or fragments thereof that have been processed differently, such as by proteolysis, phosphorylation, or other post-translational modifications, but that retain their antigenic reactivity.
[0106] As used herein, "vector" is used to describe a nucleic acid molecule that can carry another nucleic acid to which it has been linked. One type of vector is a "plasmid," which refers to a circular double-stranded DNA loop into which additional DNA segments can be ligated. Another type of vector is a viral vector, into which additional DNA segments can be ligated into the viral genome. Certain vectors are capable of autonomous replication in a host cell into which they are introduced (e.g., bacterial vectors having a bacterial origin of replication and mammalian episomal vectors). Other vectors (e.g., mammalian non-episomal vectors) can be integrated into the genome of the host cell upon introduction into the host cell, and thereby replicated along with the host genome. Moreover, certain vectors are capable of directing the expression of genes to which they are operatively linked. Such vectors are referred to herein as "recombinant expression vectors" (or simply, "expression vectors"). In general, expression vectors useful in recombinant DNA techniques are often in the form of plasmids. Since plasmids are the most commonly used form of vector, "plasmid" and "vector" can be used interchangeably. However, other forms of expression vectors, such as viral vectors (e.g., replication-defective retroviruses, adenoviruses, and adeno-associated viruses), which serve equivalent functions, may also be used. In this regard, RNA forms of vectors, including viral RNA vectors, may also be used in the context of the present disclosure.
[0107] As used herein, a "zone" refers to an area on a test strip. In some embodiments, a zone may be a "reagent zone." As used herein, a "reagent zone" refers to an area of a test strip where a reagent is provided. A reagent zone may be on a reagent pad, which is a separate segment of bibulous or non-bibulous material contained on the test strip, or may be an area of bibulous or non-bibulous material of a test strip that also includes other zones, such as an analyte detection zone. A reagent zone may carry a detectable label, which may be a direct or indirect label. Preferably, the reagent is provided in a form that is immobile in the dry state and mobile in the wet state. A reagent may be a specific binding member, an analyte or analyte analog, an enzyme, a substrate, an indicator, a component of a signal producing system, a chemical or compound that contributes to the function of the test strip assay, such as a buffer, a reducing agent, a chelating agent, a surfactant, etc.
[0108] In other embodiments, the zone may be a test result zone. As used herein, a "test result zone" refers to an area of a test strip that provides a detectable signal indicative of the presence of an analyte. The test result zone may include an immobilized binding reagent specific for the analyte ("specific binding member") and / or an enzyme that reacts with the analyte. The test result zone may include one or more analyte detection zones, e.g., "test lines". Other substances that may enable or enhance detection of the analyte, such as substrates, buffers, salts, etc., may also be provided in the test result zone. One or more members of the signal producing system may be directly or indirectly coupled to the detection zone. The test result zone may optionally include one or more control zones (e.g., "control lines") that provide an indication that the test was performed properly.
[0109] Unless otherwise specified, technical and scientific terms used herein shall have the same meaning as commonly understood by those skilled in the art. For example, the terminology used in connection with and techniques for cell and tissue culture, molecular biology, immunology, microbiology, genetics, and protein and nucleic acid chemistry and hybridization described herein are well-known and commonly used in the art. The meaning and scope of the terms shall be clear, but in the unlikely event of any potential ambiguity, the definitions provided herein shall take precedence over any dictionary or external definitions. Furthermore, unless otherwise required by context, singular terms shall include the plural and plural terms shall include the singular.
[0110] 2. Lateral flow assays, devices and methods for detecting the presence or amount of GFAP, UCH-L1, or both UCH-L1 and GFAP in a sample obtained from a subject In one embodiment, the present disclosure relates to lateral flow assays. Lateral flow assays are generally provided as part of a lateral flow device or test device that includes a lateral flow test strip (e.g., nitrocellulose or filter paper), a sample application area (e.g., a sample pad), a test result area (e.g., where the result is displayed (e.g., as a test line or a numerical value)), an optional control result area (e.g., a control line), and an analyte-specific binding partner bound to a detectable label (e.g., a colored particle or an enzyme detection system). See, for example, U.S. Patent Nos. 6,485,982; 6,187,598; 5,622,871; 6,548,309; 6,565,808; and 6,809,687, and U.S. Patent Application Publication No. 2004 / 0184954, each of which is incorporated herein by reference.
[0111] In some embodiments, the lateral flow assay is performed to determine the presence (e.g., qualitative determination) or amount (e.g., quantitative determination) of GFAP in a sample (e.g., by using at least one specific binding partner such as an anti-GFAP antibody). For example, the lateral flow assay can be used to determine the presence or amount of GFAP in a sample by using at least one specific binding partner that specifically binds to an epitope in GFAP and a second specific binding partner that includes a detectable label and specifically binds to an epitope different from the first specific binding partner in GFAP. In other embodiments, the lateral flow assay can be used to determine the presence (e.g., qualitative determination) or amount (e.g., quantitative determination) of UCH-L1 in a sample (e.g., by using at least one specific binding partner such as an anti-UCH-L1 antibody). For example, a lateral flow assay determines the presence or amount of UCH-L1 in a sample by using at least one specific binding partner that specifically binds to an epitope in UCH-L1, and a second specific binding partner that includes a detectable label and specifically binds to an epitope different from the first specific binding partner in UCH-L1. In yet further embodiments, a lateral flow assay is used to determine the presence or amount of GFAP and UCH-L1, respectively, in a sample. In some embodiments, at least two separate lateral flow assays are used to determine the presence or amount of GFAP and UCH-L1 in a sample (e.g., by using at least one first specific binding partner for GFAP, such as an anti-GFAP antibody, and at least one second specific binding partner for UCH-L1, such as an anti-UCH-L1 antibody). When at least two separate lateral flow assays are used to determine the presence or amount of GFAP and UCH-L1 in a sample, the assays can be performed simultaneously or sequentially, in any order. In other embodiments, a single lateral flow assay may be used to determine the presence or amount of GFAP and UCH-L1 in a sample.For example, a single lateral flow assay may be used to determine the presence or amount of at least one epitope in GFAP (e.g., by using at least one first specific binding partner for GFAP) and at least one epitope in UCH-L1 (e.g., by using at least one second specific binding partner for UCH-L1) in a sample, as previously described herein. In yet other embodiments, the lateral flow assay detects both GFAP and UCH-L1 in a sample.
[0112] In some embodiments, the present disclosure relates to a test device comprising a test strip impregnated with a reagent to provide a specific binding assay, e.g., an immunoassay. In some embodiments, a sample is applied to one portion of the test strip and is typically allowed to penetrate the strip material with the aid of an elution medium, e.g., water and / or a suitable buffer. In additional embodiments, the strip material may further comprise a surfactant. The sample proceeds to or through a detection zone in the test strip, where at least one specific binding partner (e.g., at least one antibody) for an analyte suspected to be in the sample (e.g., GFAP, UCH-L1, or GFAP and UCH-L1) or a fragment or variant thereof is immobilized. Any analyte (e.g., GFAP, UCH-L1, or GFAP and UCH-L1) present in the sample can become bound in the detection zone. The extent to which the analyte (e.g., GFAP, UCH-L1, or GFAP and UCH-L1) becomes bound in the zone can be determined with the aid of a labeled reagent (e.g., a specific binding partner labeled with a detectable label, such as, for example, a labeled anti-GFAP antibody and / or a labeled anti-UCH-L1 antibody), which may also be incorporated in the test strip or subsequently applied thereto. More specifically, in some embodiments, the lateral flow device comprises a single strip containing a specific binding partner (e.g., at least one antibody) for UCH-L1 and at least one specific binding partner (e.g., at least one antibody) for GFAP. Any UCH-L1 and / or GFAP present in the sample can become bound within the detection zone in the test strip, as previously described herein. In other embodiments, the lateral flow device comprises at least two single strips, a first strip containing a specific binding partner (e.g., at least one antibody) to UCH-L1 and a second strip containing a specific binding partner (e.g., at least one antibody) to GFAP.Any UCH-L1 and / or GFAP present in the sample can become bound within the detection zones on each respective strip.
[0113] In some embodiments, the analytical test device comprises a hollow casing constructed of a moisture-impermeable solid material containing a dry porous carrier in direct or indirect communication with the exterior of the casing so that a liquid test sample can be applied to the porous carrier. In some embodiments, the device also comprises a labeled specific binding partner for the analyte, the labeled specific binding partner being freely mobile within the porous carrier when in a wet state. In some embodiments, the device comprises an unlabeled specific binding partner for the same analyte, the unlabeled reagent being permanently immobilized in a detection zone on the carrier material and therefore not mobile in a wet state. The relative positioning of the labeled reagent and the detection zone is such that a liquid sample applied to the test device can pick up the labeled reagent and then permeate into the detection zone, and the test device provides the extent, if any, that the labeled reagent becomes observed in the detection zone.
[0114] Another embodiment of the present disclosure relates to a test device comprising a porous solid phase material carrying a labeled reagent in a first zone that is retained in the first zone while the porous material is in a dry state, but that is free to migrate through the porous material when the porous material is wetted, for example by application of an aqueous liquid sample suspected of containing the analyte. In some embodiments, the porous material comprises an unlabeled specific binding partner in a second zone, spatially distinct from the first zone, that has specificity for the analyte and can participate with the labeled reagent in either a "sandwich" or "competitive" reaction. The unlabeled specific binding partner is rigidly immobilized in the porous material such that it is not free to migrate when the porous material is in a wet state.
[0115] In other embodiments, the present disclosure also provides methods in which a test device as described herein is contacted with an aqueous liquid sample suspected of containing an analyte such that the sample permeates by capillary action through the porous solid phase material through the first zone to the second zone, carrying therewith the labeled reagent from the first zone to the second zone, and the presence of the analyte in the sample is determined by observing the extent, if any, that the labeled reagent becomes bound in the second zone.
[0116] In some embodiments, the labeled reagent is a specific binding partner for the analyte (e.g., GFAP and / or UCH-L1). The labeled reagent, the analyte (if present), and the immobilized unlabeled specific binding partner cooperate together in a "sandwich" reaction. This results in the labeled reagent being bound in the second zone if the analyte is present in the sample. In the sandwich format, the two binding reagents have specificity for (e.g., specifically bind to) different epitopes in the analyte.
[0117] In some embodiments, the labeled reagent is an antibody against the analyte (e.g., an anti-GFAP antibody labeled with a detectable label and / or an anti-UCH-L1 antibody labeled with a detectable label), the analyte itself (e.g., GFAP conjugated with a detectable label and / or UCH-L1 conjugated with a detectable label) or a fragment or variant thereof. In some embodiments, the labeled antibody or the labeled analyte or a fragment or variant thereof migrates through the porous solid phase material to the second zone and binds to the immobilized reagent. Analyte present in the sample (e.g., GFAP and / or UCH-L1) competes with the labeled reagent in this binding reaction. Such competition results in a reduction in the amount of labeled reagent bound in the second zone and a consequent decrease in the intensity of the signal observed in the second zone compared to the signal observed in the absence of the analyte in the sample.
[0118] In some embodiments, the test strip (e.g., carrier material) comprises nitrocellulose. This has a considerable advantage over some other strip materials, such as paper, because it has a natural ability to bind proteins without the need for prior sensitization. Specific binding partners, such as antibodies (such as anti-GFAP antibodies, anti-UCH-L1 antibodies, or anti-GFAP antibodies and anti-UCH-L1 antibodies), can be directly applied to the nitrocellulose and immobilized thereon. No chemical treatment is required that may interfere with the intrinsic specific binding activity of the reagent. Unused binding sites on the nitrocellulose can then be blocked using a simple material, such as polyvinyl alcohol. Furthermore, nitrocellulose is readily available in a range of pore sizes, which facilitates the selection of a carrier material that is particularly suited to the requirements, such as sample flow rate.
[0119] In some embodiments, the disclosure includes the use of one or more direct labels attached to one of the specific binding partners. In some embodiments, the technology uses labels including, for example, colloidal metals (e.g., sols or colloidal suspensions of gold or silver particles (e.g., gold nanoparticles, silver nanoparticles, etc.), colloidal non-metals (e.g., sols or colloidal suspensions of selenium or tellurium particles) in a fluid, typically water or an aqueous buffer), colors or dyes (e.g., dye sols), latex particles (including colored or uncolored latex particles), or any combination thereof. In some embodiments, the labels produce an immediate analytical result without the need to add additional reagents to develop a detectable signal. In addition, such labels are visible to the naked eye (e.g., do not require the use of a device (e.g., a reader or reading device) to read the amount or presence of UCH-L1, GFAP, or UCH-L1 and GFAP). They are robust and stable, and therefore can be easily used in analytical test devices that are stored in a dry state. Their release upon contact with an aqueous sample can be modulated, for example, by the use of soluble glazes.
[0120] In some embodiments, the development of the test device described herein involves the selection of technical features that allow the directly labeled specific binding partners to be used in carrier-based analytical test devices, e.g., strip-format based analytical test devices, to produce rapid and unambiguous results. In some embodiments, the results of the assay are displayed visually (e.g., distinguishable by eye), and to facilitate this, it is necessary that the direct label becomes concentrated in the detection zone. To achieve this, the directly labeled reagent should be easily and rapidly transportable by the developing liquid. Furthermore, it is preferred that the entire developing sample liquid is directed through a relatively small detection zone, so that the probability of an observable result being obtained is increased. In other embodiments, the results of the assay are displayed as a numerical value. In these embodiments, when the results are in the form of a numerical value, optionally a reader or reading device may be used, e.g., to generate the displayed value.
[0121] In some embodiments, the present disclosure includes the use of directly labeled specific binding partners on a carrier material comprising nitrocellulose. In some embodiments, the nitrocellulose has a pore size of at least about 1 micron. In some embodiments, the nitrocellulose has a pore size of about 20 microns or less. In some embodiments, the direct labels are colored latex particles that are spherical or nearly spherical in shape and have a maximum diameter of about 0.5 microns or less. In some embodiments, such particles range in size from about 0.05 to about 0.5 microns.
[0122] In some embodiments, the porous solid phase material is connected to a porous receiving member to which a liquid sample may be applied and from which the sample can permeate into the porous solid phase material. In some embodiments, the porous solid phase material is contained in a moisture-impermeable casing or housing, and the porous receiving member to which the porous solid phase material is connected extends outside the housing and can act as a means for allowing the liquid sample to enter the housing and permeate into the porous solid phase material. The housing should comprise a means, for example a suitably positioned opening, that allows a second zone of the porous solid phase material (carrying the immobilized unlabeled specific binding partner) to be observable from outside the housing so that the result of the assay can be observed. If desired, the housing can also comprise a further means that allows a further zone of the porous solid phase material to be observed from outside the housing, this further zone incorporating a control reagent that allows an indication to be obtained as to whether the assay procedure has been completed. In some embodiments, the housing comprises a removable cap or cover that can protect the protruding porous receiving member during storage prior to use. In some embodiments, if desired, the cap or cover may be replaced over the protruding porous receiving member after sample application while the assay procedure is being performed. Optionally, the labeled reagent may be incorporated elsewhere within the test device, for example, in the bibulous sample collection member.
[0123] In some embodiments, the test device is provided as a kit suitable for use in a hospital or decentralized setting. For example, the test device may be used in an urgent care clinic, a pharmacy, a grocery store or other convenience store, a residence, a workplace, and / or a government office. In other embodiments, the test device is provided as a kit suitable for use by an end user (e.g., as a self-test). In some embodiments, the kit includes multiple (e.g., two) test devices individually wrapped in a moisture-impermeable envelope and packaged with appropriate instructions for the user. For example, in this embodiment, the kit includes a first lateral flow device for detecting the presence or amount of GFAP in a sample and / or a second lateral flow device for detecting the presence or amount of UCH-L1 in a sample. In other embodiments, the kit includes a single test device individually wrapped in a moisture-impermeable envelope and packaged with appropriate instructions for the user. For example, in this embodiment, the kit includes a lateral flow device containing one or more strips for detecting the presence or amount of GFAP and / or UCH-L1 in a sample.
[0124] In some embodiments, the test device includes a porous sample receiving member. In some embodiments, the test device includes a hollow elongated casing containing a dry porous nitrocellulose carrier in indirect communication with the exterior of the casing via a water-absorbent sample receiving member protruding from the casing. In some embodiments, the porous sample receiving member is made of any water-absorbent, porous or fibrous material capable of rapidly absorbing liquid. The porosity of the material can be unidirectional (e.g., with pores or fibers running entirely or predominantly parallel to the axis of the member) or multidirectional (omnidirectional, such that the member has an amorphous sponge-like structure). Porous plastic materials such as polypropylene, polyethylene (preferably of very high molecular weight), polyvinylidene fluoride, ethylene vinyl acetate, acrylonitrile and polytetrafluoroethylene may be used. It may be advantageous to pretreat the member with a surfactant during manufacture, for example to reduce any inherent hydrophobicity in the member and thus enhance its ability to rapidly and efficiently take up and deliver wet samples. The porous sample receiving member may be made of paper or other cellulose-derived materials, such as nitrocellulose. Materials currently used for so-called felt tip pens are particularly suitable, and such materials can be molded or extruded into various lengths and cross sections suitable in the context of the present invention. In some embodiments, the material constituting the porous receiving member is chosen so that the porous member can be saturated with aqueous liquid within a few seconds. Preferably, the material remains robust when wet, and for this reason, paper and similar materials are not preferred in any embodiment in which the porous receiving member protrudes from the housing. The liquid must then freely permeate from the porous sample receiving member into the porous solid phase material.
[0125] In some embodiments, the test device includes an optional "control zone." If present, the "control" zone may be designed to convey an independent signal to the user that the test device has functioned. For example, the control zone may be loaded with a labeled antibody from the first zone, e.g., an antibody (e.g., anti-rabbit IgG) that binds to labeled rabbit IgG, to confirm that the sample has penetrated the test strip. In some embodiments, the first zone contains an antigen and / or antibody that is independent of the analyte (e.g., GFAP and / or UCH-L1) and is specifically captured in the control zone. In some embodiments, the control zone may contain an anhydrous reagent that produces a color change or color generation when moistened, e.g., anhydrous copper sulfate that turns blue when moistened with an aqueous sample. As an additional alternative, the control zone may contain an immobilized analyte that reacts with excess labeled reagent from the first zone. Since the purpose of the control zone is to indicate to the user that the test is complete, the control zone should be located downstream of the second zone where the desired test result is recorded. The positive control indicator therefore tells the user that the sample has penetrated the required distance through the test device.
[0126] The label can be any entity whose presence can be easily detected. In some embodiments, the label is a direct label, e.g., an entity that is easily visible in its native state, with the naked eye, or with the aid of optical filters and / or applied stimuli, e.g., UV light to promote fluorescence. For example, tiny colored particles, e.g., dye sols, metallic sols (e.g., gold), and colored latex particles, are very suitable. Concentration of the label into a small zone or volume results in an easily detectable signal, e.g., a strongly colored area. This can be assessed by eye, or by an instrument if desired.
[0127] In other embodiments, the present disclosure includes the use of indirect labels. Indirect labels, such as enzymes, such as alkaline phosphatase and horseradish peroxidase, may be used, but they typically require the addition of one or more developing reagents, such as substrates, before a visible signal can be detected. Such additional reagents may be incorporated into the porous solid phase material or into the sample receiving member, if present, so as to dissolve or disperse in the aqueous liquid sample. Alternatively, the developing reagents may be added to the sample prior to contact with the porous material, or the porous material may be exposed to the developing reagents after the binding reaction has taken place.
[0128] Coupling of the label to the specific binding partner can be done covalently, if desired, or by hydrophobic bonds.
[0129] In some embodiments, the labeled reagent travels with the liquid sample as it progresses to the detection zone. In other embodiments, the flow of the sample continues beyond the detection zone, and sufficient sample is applied to the porous material for this to occur, so that any excess labeled reagent from the first zone that is not involved in any binding reaction in the second zone is washed away from the detection zone by this continued flow. If desired, an absorbent "sink" may be provided at the distal end of the carrier material. For example, the absorbent sink may include, for example, Whatman 3 MM chromatography paper, to provide sufficient absorption capacity to allow any unbound conjugate to be washed away from the detection zone. As an alternative to such a sink, it may be sufficient to have a length of porous solid phase material that extends beyond the detection zone.
[0130] In some embodiments, the presence or intensity of the signal from the label that becomes bound in the second zone provides a qualitative (e.g., presence) or quantitative (e.g., amount) measurement of GFAP, UCH-L1, or GFAP and UCH-L1 in the sample. Multiple detection zones arranged in sequence on a porous solid phase material through which an aqueous liquid sample can be progressively passed may be used to provide a quantitative measurement of GFAP, UCH-L1, or GFAP and UCH-L1, or may be individually loaded with different specific binding agents to provide a multi-analyte test.
[0131] In some embodiments, the immobilized specific binding partner in the second zone is an antibody (e.g., a monoclonal antibody) that specifically binds to GFAP, UCH-L1, or GFAP and UCH-L1. In embodiments of the technique involving a sandwich reaction, the labeled reagent is also an antibody (e.g., a monoclonal antibody) that specifically binds to GFAP, UCH-L1, or GFAP and UCH-L1. The immobilized antibody and the labeled antibody should bind to different epitopes on GFAP, UCH-L1, or GFAP and UCH-L1, respectively.
[0132] In some embodiments, the carrier material is in the form of a strip or sheet to which reagents in spatially distinct zones are applied and the liquid sample is allowed to permeate through the sheet or strip from one side or end to another.
[0133] In some embodiments, the test device of the present disclosure incorporates two or more separate bodies, e.g., separate strips or sheets, of porous solid phase material, carrying mobile and immobilized reagents, respectively. For example, these separate bodies can be arranged in parallel, such that a single application of a liquid sample to the test device simultaneously initiates sample flow in the separate bodies. Separate analytical results that can be determined in this way can be used as control results. If different reagents are used on different carriers, simultaneous determination of multiple analytes in a single sample can be made. Alternatively, multiple samples can be applied individually to an array of carriers and analyzed simultaneously.
[0134] In other embodiments, the test device is capable of performing more than one lateral flow assay, and each lateral flow assay contained in the device can incorporate one or more solid phase materials, e.g., strips or sheets, carrying mobilizable and immobilized reagents, respectively.
[0135] In some embodiments, the material that constitutes the porous solid phase is nitrocellulose. This has the advantage that the antibody in the second zone can be firmly immobilized without prior chemical treatment. If the porous solid phase material comprises, for example, paper, the immobilization of the antibody in the second zone must be carried out by chemical coupling, for example, using CNBr, carbonyldiimidazole or tresyl chloride.
[0136] After application of the antibody to the detection zone, in some embodiments, the remainder of the porous solid phase material may be treated to block any remaining binding sites elsewhere. Blocking may be achieved, for example, by treatment with a protein (e.g. bovine serum albumin or milk protein) or with polyvinyl alcohol or ethanolamine or any combination of these agents. The labeled reagent for the first zone may then be dispensed onto the dry support and becomes mobile in the support when placed in moist conditions. Between each of these various process steps (sensitization, application of unlabeled reagent, blocking and application of labeled reagent), the porous solid phase material is dried.
[0137] In some embodiments, the labeled reagent is applied to the carrier as a surface layer rather than impregnated into the thickness of the carrier to support free mobility of the labeled reagent when the porous carrier is wetted with the sample. This can minimize interactions between the carrier material and the labeled reagent. In some embodiments, the carrier is pretreated with a glazing material in the area where the labeled reagent will be applied. Glazing can be achieved, for example, by depositing an aqueous sugar or cellulose solution, such as a solution of sucrose or lactose, on the carrier in the relevant area and drying. The labeled reagent can then be applied to the glazed area. In some embodiments, the remainder of the carrier material is not glazed.
[0138] In some embodiments, the porous solid phase material is a nitrocellulose sheet having a pore size of at least about 1 micron, e.g., greater than about 5 microns (e.g., about 8 to about 12 microns). In other embodiments, the nitrocellulose sheet has a nominal pore size of up to about 12 microns.
[0139] In some embodiments, the nitrocellulose sheet is "backed" with, for example, a plastic sheet, to increase its handling strength. This can be easily produced by forming a thin layer of nitrocellulose on a sheet of backing material. The actual pore size of the nitrocellulose when backed in this manner tends to be lower than that of the corresponding unbacked material. In some embodiments, a preformed sheet of nitrocellulose can be tightly sandwiched between two supporting sheets of solid material, for example, plastic sheets.
[0140] In some embodiments, the flow rate of the aqueous sample through the porous solid phase material is such that in untreated material the aqueous liquid moves at a rate of approximately 1 cm in 2 minutes or less, although slower flow rates may be used if desired. In some embodiments, the spatial separation between the zones and the flow rate characteristics of the porous carrier material are selected to allow adequate reaction time for the required specific binding to occur, and to allow the labeled reagent in the first zone to dissolve or disperse in the liquid sample and migrate through the carrier. Further control of these parameters may be achieved by the incorporation of viscosity modifiers (e.g., sugars and modified celluloses) in the sample to slow down reagent migration.
[0141] In yet other embodiments, the immobilized reagent in the second zone is impregnated throughout the thickness of the carrier in the second zone (e.g., throughout the thickness of the sheet or strip if the carrier is in the form of a sheet or strip). Such impregnation can enhance the extent to which the immobilized reagent can capture any analyte present in the moving sample.
[0142] The reagents can be applied to the carrier material in various ways. Various "printing" techniques can be used to apply liquid reagents to the carrier, including, for example, microsyringes, pens using metering pumps, direct printing and inkjet printing, any of which techniques may be used in the present context. For ease of manufacture, the carrier (e.g., a sheet) can be treated with the reagent and then subdivided into smaller parts (e.g., small, thin strips, each embodying a required reagent-containing zone) to provide a plurality of identical carrier units.
[0143] Thus, some embodiments of the present disclosure provide a test strip. One end of the test strip is a sample site where a sample is to be applied. The sample site includes a sample pad to which the sample is transferred. Incorporated into the sample site or sample pad, or downstream of the sample site, is a labeled specific binding partner (e.g., antibody or antigen) for which the sample is being tested. In some embodiments of the present disclosure provided herein, the assay test device includes a labeled anti-GFAP antibody, a labeled anti-UCH-L1 antibody, or a labeled anti-GFAP antibody and a labeled anti-UCH-L1 antibody.
[0144] In some embodiments, metal sol particles are prepared by directly coupling the analyte (e.g., GFAP, UCH-L1, or GFAP and UCH-L1) to gold particles. Additionally, labeled components can be prepared by coupling the analyte to the particles using a biotin / avidin linkage. In this latter aspect, the substance can be biotinylated and metal containing particles coated with an avidin compound are used. The biotin in the analyte can then react with the avidin compound on the particle to couple the substance and particle together. In another alternative form of the invention, labeled components can be prepared by coupling the analyte to a carrier such as bovine serum albumin (BSA), keyhole limpet hemocyanin (KLH) or ovalbumin and using this to bind to the metal particles.
[0145] In some embodiments, the metal sol particles are prepared by methodologies well known in the art. For example, the preparation of gold sol particles disclosed by G. Frens, Nature, 241, 20-22 (1973), the contents of which are incorporated herein by reference, may be used. In addition, the metal sol particles may contain a metal or metal compound, or a polymer core coated with a metal or metal compound, as described in U.S. Pat. No. 4,313,734, the contents of which are incorporated herein by reference. Other methods well known in the art may be used to attach the analyte to the gold particles. Methods include, but are not limited to, covalent coupling and hydrophobic bonding. The metal sol particles may be made of platinum, gold, silver, selenium, or copper, or any number of metal compounds that exhibit characteristic colors.
[0146] In some embodiments, the analyte is not attached to a metal sol particle, but instead to a dyed or fluorescently labeled microparticle, such as latex, polystyrene, dextran, silica, polycarbonate, methyl methacrylate, or carbon. The metal sol particle, dyed particle, or fluorescently labeled microparticle should be visible to the naked eye (e.g., as a colored line) or be readable with an appropriate instrument or reading device (e.g., reader) (spectrophotometer, fluorescent reader, etc.). Various embodiments provide multiple ways in which the gold-labeled antigen can be deposited on the strip. For example, in some embodiments, the gold-labeled antigen / antibody is deposited and dried on a rectangular or square absorbent pad, which is located downstream from where the sample is applied on the strip. In other embodiments, the analyte is attached to a microsphere. This has the effect of increasing the number of reactive sites (epitopes) in a given area. The analyte can be attached to these alternative solid phases by various methodologies. In some embodiments, hydrophobic or electrostatic domains in proteins are used for passive coating. The suspension of spheres is mixed with antigen / antibody in water or phosphate buffer solution after sonication, which is then incubated at room temperature for 10-75 minutes. The mixture is then centrifuged and the pellet containing the antigen / antibody-linked microspheres is suspended in a buffer containing 1-5% weight / volume bovine serum albumin (BSA) at room temperature for 1 hour. The BSA blocks any unreacted surface of the microspheres. After another centrifugation, the spheres are resuspended in a buffer (TBS with 5% BSA) and stored at about 4°C before use.
[0147] In some embodiments, the solid phase particles include known water-dispersible particles, such as polystyrene latex particles, as disclosed in U.S. Patent No. 3,088,875, which is incorporated herein by reference. Such solid phase materials simply consist of a suspension of small water-insoluble particles to which antigens / antibodies can bind. Suitable solid phase particles are also disclosed in, for example, U.S. Patent Nos. 4,184,849, 4,486,530, and 4,636,479, each of which is incorporated herein by reference.
[0148] In some embodiments, the analyte (e.g., GFAP and / or UCH-L1) is attached to a fluorescent microsphere or fluorescent microparticle. Characteristically, fluorescent microspheres incorporate a fluorescent dye in the solid outer matrix or the internal volume of the microsphere. Fluorescent spheres are typically detected by a fluorescence reading device or reader that excites the molecule at one wavelength and detects the emission of fluorescent waves at another wavelength. For example, Nile Red particles excite at 526 nm and emit at 574 nm, Far Red excites at 680 nm and emits at 720 nm, and Blue excites at 365 nm and emits at 430 nm. In a lateral flow format, detection of fluorescent microparticles involves the use of a reflectance reading device or reader with an appropriate excitation source (e.g., HeNe, argon, tungsten or diode laser) and appropriate emission filters for detection. The use of a diode laser allows the use of a detection system that uses low-cost lasers with detection above 600 nm. Most background fluorescence comes from molecules that emit fluorescence below 550 nm.
[0149] In some embodiments, the fluorescent microspheres contain surface functional groups such as carboxylate, sulfate or aldehyde groups that make them suitable for covalent coupling of proteins and other amine-containing biomolecules. In addition, sulfate, carboxyl and amidine microspheres are hydrophobic particles that passively absorb almost all proteins or lectins. Thus, coating is similar to that for non-fluorescent microspheres. In some embodiments, a suspension of fluorescent spheres is mixed with antigen / antibody in water or phosphate buffer solution after sonication, which is then incubated at room temperature for about 10 to about 75 minutes. EDAC (soluble carbodiimide), succinimidyl esters and isothiocyanates and other crosslinkers can be used for covalent coupling of proteins and lectins to the microspheres. After the proteins are attached to the surface of the microparticles, the mixture is centrifuged and the pellet containing the antigen or antibody linked to the fluorescent microparticles is suspended in a buffer containing 1 to 5% bovine serum albumin for 1 hour. After another centrifugation, the spheres are resuspended in buffer (TBS with 5% BSA or other suitable buffer) and stored at about 4° C. prior to use.
[0150] In some embodiments, the solid phase particles include, for example, particles of latex or other support materials, such as silica, agarose, glass, polyacrylamide, polymethylmethacrylate, carboxylate-modified latex, and sepharose. Preferably, the particles vary in size from about 0.2 microns to about 10 microns. In some embodiments, the particles are coated with a layer of antigen coupled thereto in a manner known per se in the art to present the solid phase component.
[0151] Thus, another embodiment involves providing a sample suspected of containing GFAP, UCH-L1, or GFAP and UCH-L1, which reacts with a first labeled antibody (e.g., an anti-GFAP antibody, an anti-UCH-L1 antibody, or an anti-GFAP antibody and an anti-UCH-L1 antibody) on a test strip to form a first antibody-GFAP, UCH-L1, or GFAP and UCH-L1 complex. After formation, the first antibody-GFAP, UCH-L1, or GFAP and UCH-L1 complex begins to travel along the test strip into or through a detection zone in the test strip that contains at least one second antibody that binds to a different epitope than the first antibody, forming a first labeled antibody-GFAP, UCH-L1, or GFAP and UCH-L1-second antibody complex, which is detected.
[0152] In yet other embodiments, the test strip includes three binding sites. For example, the first binding site binds GFAP or UCH-L1. The second binding site binds either UCH-L1 or GFAP, whichever is not bound by the first binding site. The third binding site is for a control. More specifically, each binding site is in the form of a striped line along the width of the test strip. Each binding site includes an antibody. As another example, in some embodiments, an anti-GFAP antibody or an anti-UCH-L1 antibody is immobilized at the first binding site, and an anti-UCH-L1 or anti-GFAP antibody is immobilized at the second site. One or both antibodies at the first and second binding sites may be labeled with a detectable label. At the control site, an antibody against a control substance (e.g., a labeled antibody or an antigen) is immobilized.
[0153] Thus, provided herein is at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in less than about 30 minutes, respectively. In some other embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in less than about 25 minutes, respectively. In still further embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in less than about 20 minutes, respectively. In still other embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in less than about 18 minutes, respectively. In still other embodiments, the at least one lateral flow assay for GFAP and / or the at least one lateral flow assay for UCH-L1 are each performed or can be performed in less than about 15 minutes. In still other embodiments, the at least one lateral flow assay for GFAP and / or the at least one lateral flow assay for UCH-L1 are each performed or can be performed in a time ranging from about 4 to about 20 minutes, optionally from about 10 to about 15 minutes. In still further embodiments, the at least one lateral flow assay for GFAP and / or the at least one lateral flow assay for UCH-L1 are each performed or can be performed in a time ranging from about 15 to about 18 minutes.
[0154] In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 4 minutes. In some embodiments, at least one lateral flow assay for GFAP and at least one lateral flow assay for UCH-L1 is or can be performed in about 5 minutes. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 6 minutes. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 7 minutes. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 8 minutes. In some embodiments, the at least one lateral flow assay for GFAP and / or the at least one lateral flow assay for UCH-L1 is or can be performed in about 9 minutes, respectively. In some embodiments, the at least one lateral flow assay for GFAP and / or the at least one lateral flow assay for UCH-L1 is or can be performed in about 10 minutes, respectively. In some embodiments, the at least one lateral flow assay for GFAP and / or the at least one lateral flow assay for UCH-L1 is or can be performed in about 11 minutes, respectively. In some embodiments, the at least one lateral flow assay for GFAP and / or the at least one lateral flow assay for UCH-L1 is or can be performed in about 12 minutes, respectively.In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 13 minutes, respectively. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 14 minutes, respectively. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 15 minutes, respectively. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 16 minutes, respectively. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 17 minutes, respectively. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 18 minutes, respectively. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 19 minutes, respectively. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 20 minutes, respectively. In some embodiments, at least one lateral flow assay for GFAP and / or at least one lateral flow assay for UCH-L1 is or can be performed in about 25 minutes, respectively.In some embodiments, the at least one lateral flow assay for GFAP and / or the at least one lateral flow assay for UCH-L1 are each performed or capable of being performed in about 30 minutes.
[0155] In another embodiment, the present disclosure relates to a system including a lateral flow device or test strip, a reading device or reader, a data analyzer, and a memory. The reading device or reader includes a port or opening for receiving a lateral flow device or a test strip from a lateral flow device. When a lateral flow device or a test strip from a lateral flow device is loaded into the port or opening, the reading device or reader obtains light intensity measurements from the device or test strip. In some embodiments, the light intensity measurements may be unfiltered or filtered for at least one wavelength and polarization. The data analyzer calculates at least one parameter from one or more of the light intensity measurements. The results of the assays performed on the test strip may be transmitted by the reading device or reader. In other embodiments, the systems described herein do not contain a reading device or reader. In such embodiments, the system may include a lateral flow device or test strip, and a computer with a memory. The results of the assays performed on the test strip may be input into the computer.
[0156] In other embodiments, the disclosure relates to methods of using the lateral flow assays and lateral flow devices described herein to determine the presence or amount of GFAP, UCH-L1, or GFAP and UCH-L1 in a sample obtained from a subject to assess, determine, and / or diagnose whether the subject has suffered an injury and / or a disease or other medical condition. For example, determining the presence or amount of GFAP, UCH-L1, or GFAP and UCH-L1 can be used to assess and / or determine whether a subject has suffered an injury to the head (such as a traumatic brain injury), suffered a stroke (such as an ischemic stroke), has SARS-CoV-2, or has Alzheimer's disease. As another example, determining the presence or amount of GFAP may be used to assess, determine and / or diagnose whether a subject has suffered an injury to the head (such as, for example, a traumatic brain injury), suffered a stroke (such as an ischemic stroke), intracerebral hemorrhage or astrocyte damage (such as that caused by SARS-CoV-2), or has Alzheimer's disease, Alexander's disease, cancer (such as, for example, glioblastoma), or an infection (such as Toxocara ova, Lyme neuroborreliosis, etc.). As yet another example, determining the presence or amount of UCH-L1 may be used to assess, determine and / or diagnose whether a subject has suffered an injury to the head (such as, for example, a traumatic brain injury), suffered a stroke (such as an ischemic stroke), neuronal apoptosis (such as that induced by deep hypothermic circulatory arrest), or has white matter pathology (subcortical), Parkinson's disease, or Alzheimer's disease. In some embodiments, the method is performed using an immunoassay. The immunoassay can be an enzyme-linked immunosorbent assay (ELISA) or a lateral flow immunoassay (LFA).
[0157] In still other embodiments, the present disclosure relates to a method for determining the presence or amount of GFAP, UCH-L1, or GFAP and UCH-L1 in a sample obtained from a subject who may or has suffered a head injury using the lateral flow assays and lateral flow devices described herein. In some embodiments, the lateral flow assay is an immunoassay. In some embodiments, the method comprises detecting the presence of GFAP, UCH-L1, or GFAP and UCH-L1 in a sample obtained from the subject by performing a lateral flow assay. In some embodiments, the lateral flow assay is an immunoassay. In other embodiments, the method comprises determining whether the levels of GFAP, UCH-L1, or GFAP and UCH-L1 are elevated in a sample obtained from the subject by performing a lateral flow assay. In some embodiments, the lateral flow assay is an immunoassay. In yet other embodiments, determining whether (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 in a sample; or (2) the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are elevated aids in the diagnosis and assessment of whether a subject has suffered a head injury. In some embodiments, the methods for determining (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 in a sample; or (2) the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are elevated may aid in determining whether a subject requires further assessment, such as by a head computed tomography (CT) scan and / or magnetic resonance imaging (MRI) procedure.
[0158] In some embodiments, the visual limit of detection (LOD) for GFAP is about 0.5 pg / mL to about 1250 pg / mL, about 1 pg / mL to about 1250 pg / mL, about 2 pg / mL to about 1250 pg / mL, about 3 pg / mL to about 1250 pg / mL, about 4 pg / mL to about 1250 pg / mL, about 5 pg / mL to about 1250 pg / mL, about 6 pg / mL to about 1250 pg / mL, about 7 pg / mL to about 1250 pg / mL, about 8 pg / mL to about 1250 pg / mL, about 9 pg / mL to about 1250 pg / mL, about 10 pg / mL to about 1250 pg / mL, about 11 pg / mL to about 1250 pg / mL, about 12 pg / mL to about 1250 pg / mL, about 13 pg / mL to about 1250 pg / mL, about 14 pg / mL to about 1250 pg / mL, about 15 pg / mL to about 1250 pg / mL, about 16 pg / mL to about 1250 pg / mL, about 17 pg / mL to about 1250 pg / mL, about 18 pg / mL to about 1250 pg / mL, about 19 pg / mL to about 1250 pg / mL, about 20 pg / mL to about 1250 pg / mL, about 21 pg / mL to about 1250 pg / mL, about 22 pg / mL to about 1250 pg / mL, about 23 pg / mL to about 1250 pg / mL, about 24 pg / mL to about 1250 pg / mL, about 250 pg / mL, about 7 pg / mL to about 1250 pg / mL, about 8 pg / mL to about 1250 pg / mL, about 9 pg / mL to about 1250 pg / mL, about 10 pg / mL to about 1250 pg / mL, or about 15 pg / mL to about 1250 pg / mL; and / or the visual detection limit for UCH-L1 is between about 0.5 pg / mL to about 1250 pg / mL, Approx. 1 pg / mL to approx. 1250 pg / mL, approx. 2 pg / mL to approx. 1250 pg / mL, approx. 3 pg / mL to approx. 1250 pg / mL, approx. 4 pg / mL to approx. 1250 pg / mL, approx. 5 pg / mL ~ approx. 1250pg / mL, approx. 6pg / mL ~ approx. 1250pg / mL, approx. 7pg / mL ~ approx. 1250pg / mL, approx. 8pg / mL ~ approx. 1250pg / mL, approx. 9pg / mL ~ about 1250 pg / mL, about 10 pg / mL to about 1250 pg / mL, about 15 pg / mL to about 1250 pg / mL, about 20 pg / mL to about 1250 pg / mL, about 25 pg / mL to about 1250 pg / mL, about 50 pg / mL to about 1250 pg / mL, about 100 pg / mL to about 1250 pg / mL, or between about 200 pg / mL to about 1250 pg / mL. In some other embodiments, the visual detection limit for GFAP is between about 20 pg / mL to about 125 pg / mL, and / or the visual detection limit for UCH-L1 is between about 250 pg / mL to about 1250 pg / mL. In some other embodiments, the visual detection limit for GFAP is between about 25 pg / mL and about 125 pg / mL and / or the visual detection limit for UCH-L1 is between about 300 pg / mL and about 1250 pg / mL. In still other embodiments, the visual detection limit for GFAP is between about 30 pg / mL and about 125 pg / mL and / or the visual detection limit for UCH-L1 is between about 300 pg / mL and about 1250 pg / mL.In still yet other embodiments, the visual detection limit for GFAP is between about 35 pg / mL and about 125 pg / mL, and / or the visual detection limit for UCH-L1 is between about 350 pg / mL and about 1250 pg / mL. In still further embodiments, the visual detection limit for GFAP is between about 35 pg / mL and about 100 pg / mL, and / or the visual detection limit for UCH-L1 is between about 350 pg / mL and about 750 pg / mL. In still yet other embodiments, the visual detection limit for GFAP is between about 35 pg / mL and about 50 pg / mL, and / or the visual detection limit for UCH-L1 is between about 35 pg / mL and about 500 pg / mL. In still further embodiments, through optimization (e.g., of the assay, assay components, visual display, or conversion to numerical values), the visual detection limits for GFAP, UCH-L1, and GFAP and UCH-L1 may be further reduced, for example, to 5-fold more sensitive, 10-fold more sensitive, 20-fold more sensitive, 25-fold more sensitive, 30-fold more sensitive, 40-fold more sensitive, 50-fold more sensitive, 60-fold more sensitive, 70-fold more sensitive, 80-fold more sensitive, 90-fold more sensitive, or 100-fold more sensitive, etc.
[0159] The methods described herein utilize at least one sample obtained from a subject (e.g., from a human subject). In some embodiments, the sample is obtained within about 48 hours after actual or suspected head injury. In other embodiments, the sample is obtained within about 24 hours after actual or suspected head injury. In yet other embodiments, the sample is obtained within about 12 hours after actual or suspected head injury. In some embodiments, the sample is taken from a subject (e.g., a human subject) within about 48 hours of actual or suspected head injury. For example, the sample may be administered within about 0 minutes, about 1 minute, about 2 minutes, about 3 minutes, about 4 minutes, about 5 minutes, about 6 minutes, about 7 minutes, about 8 minutes, about 9 minutes, about 10 minutes, about 11 minutes, about 12 minutes, about 13 minutes, about 14 minutes, about 15 minutes, about 20 minutes, about 30 minutes, about 60 minutes, about 90 minutes, about 2 hours, about 3 hours, about 4 hours, about 5 hours, about 6 hours, about 7 hours, about 8 hours, about 9 hours, about 10 hours, about 11 hours, about 12 hours, about 13 hours, about 14 hours, about 15 hours, about 16 hours, about 17 hours, about 18 hours, or within about 2 hours after an actual or suspected head injury. , within about 19 hours, within about 20 hours, within about 21 hours, within about 22 hours, within about 23 hours, within about 24 hours, within about 25 hours, within about 26 hours, within about 27 hours, within about 28 hours, within about 29 hours, within about 30 hours, within about 31 hours, within about 32 hours, within about 33 hours, within about 34 hours, within about 35 hours, within about 36 hours, within about 37 hours, within about 38 hours, within about 39 hours, within about 40 hours, within about 41 hours, within about 42 hours, within about 43 hours, within about 44 hours, within about 45 hours, within about 46 hours, within about 47 hours, or within about 48 hours.
[0160] In other embodiments, the methods, assays, and lateral flow devices described herein further comprise performing a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) procedure, or both a CT scan or an MRI procedure on the subject if the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in a sample from the subject. For example, in still further embodiments, the method further comprises performing a head CT scan on the subject if the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in a sample from the subject. In still further embodiments, the method further comprises performing a head CT scan and an MRI procedure on the subject if the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in a sample from the subject. In still further embodiments, the method further comprises performing a head CT scan and an MRI procedure on the subject if the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in a sample from the subject.
[0161] In still other embodiments, the methods described herein further comprise performing a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) procedure, or both a CT scan or an MRI procedure on the subject if the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are elevated. For example, in some embodiments, the methods further comprise performing a head CT scan on the subject if the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are elevated. As another example, in some embodiments, the methods further comprise performing an MRI procedure on the subject if the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are elevated. In yet another embodiment, the methods further comprise performing a head CT scan and an MRI procedure on the subject if the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are elevated.
[0162] In other embodiments, the method further comprises not performing a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) procedure, or both a head CT scan or an MRI procedure on the subject if the presence of GFAP, UCH-L1, or GFAP and UCH-L1 in the sample is not detected. In still other embodiments, the method further comprises not performing a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) procedure, or both a head CT scan or an MRI procedure on the subject if the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are not elevated. In other words, the method comprises (1) not detecting the presence of GFAP, UCH-L1, or GFAP and UCH-L1 in the sample; or (2) "precluding" the need for a head CT scan, an MRI procedure, or both, if the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are not elevated.
[0163] In some embodiments, the method further comprises treating the subject for mild, moderate, moderate-severe, or severe TBI if (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in the subject's sample; or (2) the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are determined to be elevated. For example, in some embodiments, the method further comprises treating the subject for mild TBI if (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in the subject's sample; or (2) the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are determined to be elevated. In some embodiments, the method further comprises treating the subject for moderate to severe TBI if (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in the subject's sample; or (2) the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are determined to be elevated. In some embodiments, the method further comprises treating the subject for severe TBI if (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in the subject's sample; or (2) the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are determined to be elevated. In some embodiments, the selection of an appropriate treatment may be facilitated by the results of a head CT scan, MRI procedure, or both, when performed on the subject. For example, the results of a head CT scan and / or MRI procedure may help further distinguish between mild, moderate to severe, or severe TBI in the subject. Such a distinction may aid in the selection of an appropriate treatment for the subject. In some embodiments, the methods further include monitoring the subject if the subject's levels of GFAP, UCH-L1, or GFAP and UCH-L1 are elevated.
[0164] In some embodiments, the method further comprises treating a subject (e.g., a human subject) assessed as having mild, moderate, severe, or moderate-severe traumatic brain injury with a traumatic brain injury treatment, as described below. In yet other embodiments, the method further comprises treating a subject (e.g., a human subject) assessed as having mild traumatic brain injury with a traumatic brain injury treatment, as described below. In yet other embodiments, the method further comprises treating a subject (e.g., a human subject) assessed as having moderate traumatic brain injury with a traumatic brain injury treatment, as described below. In yet other embodiments, the method further comprises treating a subject (e.g., a human subject) assessed as having severe traumatic brain injury with a traumatic brain injury treatment. In some embodiments, the method further comprises monitoring a subject (e.g., a human subject) assessed as having mild traumatic brain injury, as described below. In other embodiments, the method further comprises monitoring a subject (e.g., a human subject) assessed as having moderate traumatic brain injury, as described below. In yet other embodiments, the method further comprises monitoring a subject (e.g., a human subject) assessed as having a severe traumatic brain injury, as described below, hi yet other embodiments, the method further comprises monitoring a subject (e.g., a human subject) assessed as having a moderate to severe traumatic brain injury.
[0165] 3. Treatment and Monitoring of Subjects Suffering from Traumatic Brain Injury A subject (e.g., a human subject) identified or assessed in the methods, lateral flow assays, and lateral flow devices described herein may be treated or monitored if (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected; or (2) the levels of GFAP, UCH-L1, or GFAP and UCH-L1 are determined to be elevated. In some embodiments, the method further includes treating the subject (e.g., a human subject) with a traumatic brain injury treatment, such as any treatment known in the art, if (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 in the sample is detected; or (2) the subject is determined to have elevated levels of GFAP, UCH-L1, or GFAP and UCH-L1. For example, traumatic brain injury treatment may take a variety of forms, depending on the severity of the injury to the head. For example, in a subject suffering from mild TBI, treatment may include one or more of rest, refraining from physical activity such as sports, avoiding light or wearing sunglasses when outside in bright light, medications to relieve headaches or migraines, antiemetics, etc. Treatment for patients suffering from moderate, severe, or moderate-severe TBI may include administration of one or more appropriate medications (e.g., diuretics, anticonvulsant medications, medications to sedate and put the individual into a drug-induced coma, or other pharmaceutical or biopharmaceutical medications (known or developed in the future for the treatment of TBI), etc.), one or more surgical procedures (e.g., removal of hematomas, repair of skull fractures, decompressive craniotomy, etc.), protection of the airway, and one or more therapies (e.g., one or more rehabilitation, cognitive behavioral therapy, anger management, counseling psychology, etc.).In some embodiments, the method further includes monitoring the subject (e.g., a human subject) if (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in the sample (which may be indicative of, e.g., mild, moderate, severe, or moderate-severe traumatic brain injury, or mild, moderate, severe, or moderate-severe traumatic brain injury); or (2) the subject is assessed as having elevated levels of GFAP, UCH-L1, or GFAP and UCH-L1 (which may be indicative of, e.g., mild, moderate, severe, or moderate-severe traumatic brain injury, or mild, moderate, severe, or moderate-severe traumatic brain injury). For example, if (1) the presence of GFAP, UCH-L1, or GFAP and UCH-L1 is detected in the sample; or (2) the subject is assessed as having elevated levels of GFAP, UCH-L1, or GFAP and UCH-L1, monitoring the subject can include monitoring using a CT scan and / or MRI procedure. In some embodiments, a subject identified as having a traumatic brain injury, e.g., mild traumatic brain injury, moderate traumatic brain injury, severe traumatic brain injury, or moderate-severe traumatic brain injury, or mild traumatic brain injury, moderate traumatic brain injury, severe traumatic brain injury, or moderate-severe traumatic brain injury, can be monitored using a CT scan and / or MRI.
[0166] 4. Methods for Measuring UCH-L1 Levels In the methods, lateral flow assays, and lateral flow devices described above, the UCH-L1 level may be measured by any means. In some embodiments, measuring the presence or amount of UCH-L1 comprises contacting the sample with a first specific binding member and a second specific binding member. In some embodiments, the first specific binding member is a capture antibody and the second specific binding member is a detection antibody. In some embodiments, the step of measuring the level of UCH-L1 comprises contacting the sample with a first specific binding member and a second specific binding member, in any order, with a capture antibody (e.g., a UCH-L1 capture antibody) that binds to an epitope on UCH-L1 or a UCH-L1 fragment to form a capture antibody-UCH-L1 antigen complex (e.g., a UCH-L1 capture antibody-UCH-L1 antigen complex), and (2) a detectable label that binds to an epitope on UCH-L1 not bound by the capture antibody to form a UCH-L1 antigen complex. - contacting the sample with a detection antibody (e.g., a UCH-L1 detection antibody) which forms a detection antibody complex (e.g., a UCH-L1 antigen-UCH-L1 detection antibody complex) to form a capture antibody-UCH-L1 antigen-detection antibody complex (e.g., a UCH-L1 capture antibody-UCH-L1 antigen-UCH-L1 detection antibody complex), and measuring the amount or concentration of UCH-L1 in the sample based on a signal generated by a detectable label in the capture antibody-UCH-L1 antigen-detection antibody complex.
[0167] In some embodiments, the first specific binding member is immobilized on a solid support. In some embodiments, the second specific binding member is immobilized on a solid support. In some embodiments, the first specific binding member is a UCH-L1 antibody described below.
[0168] In some embodiments, the sample is diluted or undiluted. In some embodiments, the sample is about 1 to about 100 microliters. In some embodiments, the sample is about 10 to about 90 microliters. In some embodiments, the sample is about 1 microliter, about 5 microliters, about 10 microliters, about 20 microliters, about 30 microliters, about 40 microliters, about 50 microliters, about 60 microliters, about 70 microliters, about 80 microliters, or about 90 microliters. In some embodiments, the sample is about 1 to about 85 microliters, about 1 to about 80 microliters, about 1 to about 75 microliters, about 1 to about 65 microliters, about 1 to about 50 microliters, about 1 to about 40 microliters, about 1 to about 30 microliters, about 1 to about 20 microliters, about 1 to about 10 microliters, or about 1 to about 5 microliters. In some embodiments, the sample is about 1 microliter, about 2 microliters, about 3 microliters, about 4 microliters, about 5 microliters, about 6 microliters, about 7 microliters, about 8 microliters, about 9 microliters, about 10 microliters, about 11 microliters, about 12 microliters, about 13 microliters, about 14 microliters, about 15 microliters, about 16 microliters, about 17 microliters, about 18 microliters, about 19 microliters, about 20 microliters, about 21 microliters, about 22 microliters, about 23 microliters, about 24 microliters, about 25 microliters, about 26 microliters, about 27 microliters, about 28 microliters, about 29 microliters, about 30 microliters, about 40 microliters, about 50 microliters, about 60 microliters, about 70 microliters, about 80 microliters, about 90 microliters, or about 100 microliters. In some embodiments, the sample is about 1 to about 150 microliters or less, or about 1 to about 80 microliters or less.
[0169] 5.UCH-L1 antibody The methods described herein may use isolated antibodies that specifically bind to ubiquitin carboxy-terminal hydrolase L1 ("UCH-L1") (or fragments thereof), referred to as "UCH-L1 antibodies." UCH-L1 antibodies may be used to assess UCH-L1 status as a measure of traumatic brain injury, or to detect the presence of UCH-L1 in a sample, to quantitate the amount of UCH-L1 present in a sample, or to detect the presence of UCH-L1 in a sample and quantitate the amount of UCH-L1 in a sample.
[0170] Ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) Ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) ("UCH-L1"), also known as "ubiquitin C-terminal hydrolase", is a deubiquitinating enzyme. UCH-L1 is a member of a gene family whose products hydrolyze small C-terminal adducts of ubiquitin to generate ubiquitin monomers. Expression of UCH-L1 is highly specific to cells of the neurons and diffuse neuroendocrine system and their tumors. UCH-L1 is abundant in all neurons (accounting for 1-2% of total brain protein) and is specifically expressed in neurons and testis / ovary. The catalytic triad of UCH-L1 contains a cysteine at position 90, an aspartic acid at position 176, and a histidine at position 161, which contribute to its hydrolase activity.
[0171] Human UCH-L1 has the following amino acid sequence:
[0172] [ka] may have.
[0173] Human UCH-L1 can be a fragment or variant of SEQ ID NO: 1. Fragments of UCH-L1 can be between 5 and 225 amino acids, between 10 and 225 amino acids, between 50 and 225 amino acids, between 60 and 225 amino acids, between 65 and 225 amino acids, between 100 and 225 amino acids, between 150 and 225 amino acids, between 100 and 225 amino acids, or between 175 and 225 amino acids in length. Fragments can include consecutively numbered amino acids derived from SEQ ID NO: 1.
[0174] b.UCH-L1 recognition antibody The antibody is an antibody that binds to UCH-L1, a fragment thereof, an epitope of UCH-L1 or a variant thereof. The antibody may be a fragment of an anti-UCH-L1 antibody or a variant or derivative thereof. The antibody may be a polyclonal or monoclonal antibody. The antibody may be a chimeric antibody, a single chain antibody, an affinity matured antibody, a human antibody, a humanized antibody, a fully human antibody or an antibody fragment such as a Fab fragment or a mixture thereof. The antibody fragment or derivative may include a F(ab')2 fragment, an Fv fragment or a scFv fragment. The antibody derivative may be produced by peptidomimetics. Furthermore, techniques described for producing single chain antibodies may be adapted to produce single chain antibodies.
[0175] The anti-UCH-L1 antibody may be a chimeric or humanized anti-UCH-L1 antibody. In one embodiment, both the humanized and chimeric antibodies are monovalent. In one embodiment, both the humanized and chimeric antibodies comprise a single Fab region linked to an Fc region.
[0176] Human antibodies can be derived by phage display technology or transgenic mice expressing human immunoglobulin genes. Human antibodies can be generated and isolated as a result of a human immune response in vivo. See, for example, Funaro et al., BMC Biotechnology, 2008(8):85. Thus, the antibody can be a product of a human and may not be an animal repertoire. Because the antibody is of human origin, the risk of reactivity against self-antigens can be minimized. Alternatively, standard yeast display libraries and yeast display technology can be used to select and isolate human anti-UCH-L1 antibodies. For example, a library of naive human single chain variable fragments (scFv) can be used to select human anti-UCH-L1 antibodies. Transgenic animals can be used to express human antibodies.
[0177] A humanized antibody can be an antibody molecule derived from a non-human species antibody that binds to a desired antigen and has one or more complementarity determining regions (CDRs) from the non-human species and a framework region derived from a human immunoglobulin molecule.
[0178] The antibody is distinguishable from known antibodies in that it possesses a different biological function than antibodies known in the art.
[0179] (1) Epitope The antibody may immunospecifically bind to UCH-L1 (SEQ ID NO: 1), a fragment thereof, or a variant thereof. The antibody may immunospecifically recognize and bind to at least 3 amino acids, at least 4 amino acids, at least 5 amino acids, at least 6 amino acids, at least 7 amino acids, at least 8 amino acids, at least 9 amino acids, or at least 10 amino acids within the epitope region. The antibody may immunospecifically recognize and bind to an epitope having at least 3 consecutive amino acids, at least 4 consecutive amino acids, at least 5 consecutive amino acids, at least 6 consecutive amino acids, at least 7 consecutive amino acids, at least 8 consecutive amino acids, at least 9 consecutive amino acids, or at least 10 consecutive amino acids within the epitope region.
[0180] c. Preparation / production of antibodies Antibodies may be prepared by any of a variety of techniques, including techniques well known to those of skill in the art. In general, antibodies may be produced by conventional techniques or by cell culture techniques, including the generation of monoclonal antibodies by transfection of antibody genes, heavy and / or light chains into a suitable bacterial or mammalian cell host that allows for the production of antibodies, which may be recombinant. The term "transfection" in its various forms is intended to encompass a wide variety of techniques commonly used for the introduction of foreign DNA into prokaryotic or eukaryotic host cells, such as electroporation, calcium phosphate precipitation, DEAE-dextran transfection, and others. Although it is possible to express antibodies in either prokaryotic or eukaryotic host cells, expression of antibodies in eukaryotic cells is preferred, and expression of antibodies in mammalian host cells is most preferred, since such eukaryotic cells (especially mammalian cells) are more likely than prokaryotic cells to assemble and secrete properly folded and immunologically active antibodies.
[0181] Exemplary mammalian host cells for expressing recombinant antibodies include Chinese hamster ovary (CHO cells) used with a DHFR selectable marker as described, for example, in Kaufman and Sharp, J. Mol. Biol., 159:601-621 (1982) (including dhfr-CHO cells described in Urlaub and Chasin, Proc. Natl. Acad. Sci. USA, 77:4216-4220 (1980)), NS0 myeloma cells, COS cells, and SP2 cells. When a recombinant expression vector encoding an antibody gene is introduced into a mammalian host cell, the antibody is produced by culturing the host cell for a sufficient time to allow for expression of the antibody within the host cell or, more preferably, secretion of the antibody into the culture medium in which the host cell is grown. The antibody may be recovered from the culture medium using standard protein purification methods.
[0182] The host cells may also be used to generate functional antibody fragments, such as Fab fragments or scFv molecules. It is understood that variations on the above procedures may be implemented. For example, it may be desirable to transfect the host cells with DNA encoding functional fragments of the antibody light and / or heavy chains. Recombinant DNA technology may also be used to remove some or all of the DNA encoding either or both of the light and heavy chains that is not necessary for binding to the antigen of interest. Molecules expressed from such truncated DNA molecules are also encompassed by antibodies. In addition, bifunctional antibodies, in which one heavy and one light chain is an antibody (i.e., binds human UCH-L1) and the other heavy and light chains are specific for an antigen other than human UCH-L1, may also be generated by crosslinking the antibody to a second antibody via standard chemical crosslinking methods.
[0183] In a preferred system for recombinantly expressing an antibody or antigen-binding portion thereof, a recombinant expression vector encoding both the antibody heavy chain and the antibody light chain is introduced into dhfr-CHO cells by calcium phosphate-mediated transfection. Within the recombinant expression vector, each of the antibody heavy chain gene and the antibody light chain gene is operably linked to a CMV enhancer / AdMLP promoter regulatory element to drive high levels of gene transcription. The recombinant expression vector also carries a DHFR gene that allows for selection of CHO cells transfected with the vector using methotrexate selection / amplification. The host cells of the selected transformants are cultured to allow expression of the antibody heavy and light chains, and intact antibody is recovered from the culture medium. Standard molecular biology methods are used to prepare the recombinant expression vector, transfect the host cells, select for transformants, culture the host cells, and recover the antibody from the culture medium. Still further, a method for synthesizing a recombinant antibody is by culturing the host cells in an appropriate culture medium until the recombinant antibody is synthesized. The method may further comprise the step of isolating the recombinant antibody from the culture medium.
[0184] The method of preparing monoclonal antibodies involves the preparation of immortal cell lines capable of producing antibodies with the desired specificity. Such cell lines can be generated from spleen cells obtained from immunized animals. The animals can be immunized with UCH-L1 or fragments and / or variants thereof. The peptide used to immunize the animals can include amino acids encoding human Fc, e.g., the Fc (fragment crystallizable) region or tail region of a human antibody. The spleen cells are then immortalized, e.g., by fusion with a myeloma cell fusion partner. Various fusion techniques can be utilized. For example, spleen cells and myeloma cells are combined with a non-ionic detergent for several minutes and then plated at low density on a selective medium that supports the growth of hybrid cells but not myeloma cells. One such technique uses hypoxanthine, aminopterin, thymidine (HAT) selection. Another technique involves electrofusion. After a sufficient time, usually about 1-2 weeks, colonies of hybrids are observed. Single colonies are selected and their culture supernatants are tested for binding activity to the polypeptide. Hybridomas with high reactivity and specificity can be used.
[0185] Monoclonal antibodies can be isolated from the supernatant of growing hybridoma colonies. In addition, various techniques can be utilized to enhance the yield, such as injection of the hybridoma cell line into the peritoneal cavity of a suitable vertebrate host, such as a mouse. Monoclonal antibodies can then be harvested from the ascites fluid or blood. Contaminants can be removed from the antibody by conventional techniques, such as chromatography, gel filtration, precipitation, and extraction. Affinity chromatography is an example of a method that can be used in the process of purifying the antibody.
[0186] The proteolytic enzyme papain preferentially cleaves IgG molecules into several fragments, two of which (F(ab) fragments) contain covalent heterodimers each containing an intact antigen-binding site. The enzyme pepsin can cleave IgG molecules into several fragments, including the F(ab')2 fragment, which contains both antigen-binding sites.
[0187] Fv fragments can be generated by preferential proteolytic cleavage of IgM, and in rare cases, IgG or IgA immunoglobulin molecules. Fv fragments can be derived using recombinant methods. Fv fragments contain a non-covalent VH::VL heterodimer that contains an antigen-binding site that retains much of the antigen recognition and binding capabilities of a native antibody molecule.
[0188] Each antibody, antibody fragment or derivative may comprise a set of heavy and light chain complementarity determining regions ("CDRs") interposed between a set of heavy and light chain frameworks ("FRs") that provide support for the CDRs and define the spatial relationship of the CDRs to each other. The set of CDRs may contain three hypervariable regions, consisting of heavy chain V regions or light chain V regions.
[0189] Other suitable methods for making or isolating antibodies with the requisite specificity can be used, including, but not limited to, selection of recombinant antibodies from peptide or protein libraries (e.g., but not limited to, display libraries such as bacteriophage libraries, ribosomal libraries, oligonucleotide libraries, RNA libraries, cDNA libraries, yeast libraries, etc.) commercially available from a variety of commercial sources, such as Cambridge Antibody Technologies (Cambridgeshire, UK), MorphoSys (Martinsreid / Planegg, Del.), Biovation (Aberdeen, Scotland, UK), BioInvent (Lund, Sweden), using methods known in the art. See U.S. Patent Nos. 4,704,692; 5,723,323; 5,763,192; 5,814,476; 5,817,483; 5,824,514; and 5,976,862. An alternative method relies on immunization of transgenic animals capable of generating a repertoire of human antibodies (e.g., SCID mice, Nguyen et al. (1997), Microbiol. Immunol., 41:901-907; Sandhu et al. (1996), Crit. Rev. Biotechnol., 16:95-118; Eren et al. (1998), Immunol., 93:154-161), as known in the art and / or described herein.Such techniques include ribosome display (Hanes et al. (1997), Proc. Natl. Acad. Sci. USA, 94:4937-4942; Hanes et al. (1998), Proc. Natl. Acad. Sci. USA, 95:14130-14135); single cell antibody generation techniques (e.g., the selected lymphocyte antibody assay ("SLAM") (U.S. Patent No. 5,627,052; Wen et al. (1987) J. Immunol., 17:887-892; Babcook et al. (1996), Proc. Natl. Acad. Sci. USA, 93:7843-7848); gel microdroplets and flow cytometry (Powell et al. (1990), Biotechnol., 8:333-337; One Cell Systems (Cambridge, Mass); Gray et al. (1995), J. Imm. Meth., 182:155-163; Kenny et al. (1995), Bio / Technol., 13:787-790); B cell selection (Steenbakkers et al. (1994), Molec. Biol. Reports, 19:125-134 (1994)).
[0190] Affinity matured antibodies can be produced by any one of a number of procedures known in the art, for example, Marks et al., BioTechnology, 10:779-783 (1992) describe affinity maturation by VH and VL domain shuffling. Random mutagenesis of CDR and / or framework residues has been described by Barbas et al., Proc. Nat. Acad. Sci. USA, 91:3809-3813 (1994); Schier et al., Gene, 169:147-155 (1995); Yelton et al., J. Immunol., 155:1994-2004 (1995); Jackson et al., J. Immunol., 154(7):3310-3319 (1995); Hawkins et al., J. Mol. Biol., 226:889-896 (1992). Selective mutagenesis positions and selective mutations at contact or hypermutation positions with activity enhancing amino acid residues are described in U.S. Pat. No. 6,914,128 B1.
[0191] Antibody variants may be prepared using delivery of a polynucleotide encoding the antibody to a suitable host, e.g., to provide transgenic animals or mammals, such as goats, cows, horses, sheep, and others, which produce such antibodies in their milk. Such methods are known in the art and described, for example, in U.S. Patent Nos. 5,827,690; 5,849,992; 4,873,316; 5,849,992; 5,994,616; 5,565,362; and 5,304,489.
[0192] Antibody variants may also be prepared by delivering polynucleotides to produce transgenic plants and cultured plant cells (such as, but not limited to, tobacco, corn, and duckweed) that produce such antibodies, specified portions, or variants in plant parts or cells cultured therefrom. For example, Cramer et al. (1999), Curr. Top. Microbiol. Immunol., 240:95-118 and references cited therein, describe the production of transgenic tobacco leaves that express large amounts of recombinant proteins, for example, using inducible promoters. Transgenic corn has been used to express mammalian proteins at commercial production levels with biological activity equivalent to mammalian proteins produced in other recombinant systems or purified from natural sources. See, for example, Hood et al., Adv. Exp. Med. Biol. (1999), 464:127-147 and references cited therein. Antibody variants have also been produced in large quantities from transgenic plant seeds containing antibody fragments such as single chain antibodies (scFv), including tobacco seeds and potato tubers. See, e.g., Conrad et al. (1998), Plant Mol. Biol., 38:101-109 and references cited therein. Thus, antibodies can also be made using transgenic plants according to known methods.
[0193] Derivatives of antibodies can be made, for example, by adding exogenous sequences to modify immunogenicity or to reduce, enhance or modify binding, affinity, on-rate, off-rate, avidity, specificity, half-life or any other suitable characteristic. Generally, the non-human sequences of the variable and constant regions are replaced with human or other amino acids while maintaining some or all of the non-human or human CDR sequences.
[0194] A small antibody fragment may be a diabody having two antigen-binding sites, where the fragment comprises a heavy chain variable domain (VH) connected to a light chain variable domain (VL) (VH VL) on the same polypeptide chain. See, for example, EP 404,097; WO 93 / 11161 and Hollinger et al. (1993), Proc. Natl. Acad. Sci. USA, 90:6444-6448. By using a linker that is too short to allow pairing between the two domains on the same chain, the domains are forced to pair with complementary domains on another chain and create two antigen-binding sites. See also U.S. Pat. No. 6,632,926 by Chen et al., which is incorporated by reference in its entirety and which also discloses antibody mutants in which one or more amino acids are inserted into a hypervariable region of a parent antibody and which have a binding affinity for a target antigen that is at least about two-fold stronger than the binding affinity of the parent antibody for that antigen.
[0195] The antibody may be a linear antibody. Procedures for making linear antibodies are known in the art and are described in Zapata et al. (1995), Protein Eng., 8(10):1057-1062. Briefly, these antibodies contain a pair of tandem Fd segments (VH-CH1-VH-CH1) that form a pair of antigen-binding regions. Linear antibodies may be bispecific or monospecific.
[0196] Antibodies can be recovered and purified from recombinant cell culture by known methods, including, but not limited to, Protein A purification, ammonium sulfate or ethanol precipitation, acid extraction, anion or cation exchange chromatography, phosphocellulose chromatography, hydrophobic interaction chromatography, affinity chromatography, hydroxyapatite chromatography, and lectin chromatography. High performance liquid chromatography ("HPLC") can also be used for purification.
[0197] It may be useful to detectably label the antibody. Methods for conjugating the antibody to these agents are known in the art. By way of example only, the antibody may be labeled with a detectable moiety such as a radioactive atom, a chromophore, a fluorophore, or the like. Such labeled antibodies may be used for diagnostic methods in vivo or in an isolated test sample. Such labeled antibodies may be linked to a cytokine, to a ligand, to another antibody.Suitable agents for coupling to the antibody to achieve an anti-tumor effect include cytokines, such as interleukin 2 (IL-2) and tumor necrosis factor (TNF); photosensitizing agents for use in photodynamic therapy, including aluminum (III) phthalocyanine tetrasulfonate, hematoporphyrin and phthalocyanines; radionuclides, such as iodine-131 (131I), yttrium-90 (90Y), bismuth-212 (212Bi), bismuth-213 (213Bi), technetium-99m (99mTc), Rhenium-186 (186Re) and Rhenium-188 (188Re); antibiotics such as doxorubicin, adriamycin, daunorubicin, methotrexate, daunomycin, neocarzinostatin and carboplatin; bacterial, plant and other toxins such as diphtheria toxin, Pseudomonas exotoxin A, Staphylococcus aureus enterotoxin A, abrin-A toxin, ricin A (deglycosylated ricin A and native ricin A), TGF-alpha toxin, Chinese cobra (naja naja atra (naja naja atra) and gelonin (a plant toxin); ribosome-inactivating proteins from plants, bacteria and fungi, such as restrictocin (a ribosome-inactivating protein produced by Aspergillus restrictus), saporin (a ribosome-inactivating protein from Saponaria officinalis) and RNase; tyrosine kinase inhibitors; ly207702 (a difluorinated purine nucleoside); liposomes containing anticystants (e.g., toxins, antisense oligonucleotides encoding methotrexate, plasmids, etc.); and other antibodies or antibody fragments, such as F(ab).
[0198] The production of antibodies through hybridoma technology, selected lymphocyte antibody technique (SLAM), transgenic animals and the use of recombinant antibody libraries are described in more detail below.
[0199] (1) Anti-UCH-L1 monoclonal antibody using hybridoma technology Monoclonal antibodies can be prepared using a wide variety of techniques known in the art, including the use of hybridoma, recombinant, and phage display technologies, or a combination thereof. For example, monoclonal antibodies can be produced using hybridoma methods known in the art, including those taught in, for example, Harlow et al., Antibodies: A Laboratory Manual, 2nd Edition (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, 1988); Hammerling et al., Monoclonal Antibodies and T-Cell Hybridomas (Elsevier, NY, 1981). It is also noted that the term "monoclonal antibody" as used herein is not limited to antibodies produced via hybridoma technology. The term "monoclonal antibody" refers to an antibody derived from a single clone, including any eukaryotic, prokaryotic, or phage clone, and not the method by which it is produced.
[0200] The monoclonal antibodies produced by the method as well as the method of producing the antibodies may include a step of culturing hybridoma cells secreting the antibodies of the present disclosure, where the hybridomas are preferably produced by fusing spleen cells isolated from an animal, e.g., a rat or mouse, immunized with UCH-L1 with myeloma cells and then screening the hybridomas resulting from the fusion for hybridoma clones secreting antibodies capable of binding to the polypeptides of the present disclosure. Briefly, rats may be immunized with UCH-L1 antigen. In a preferred embodiment, the UCH-L1 antigen is administered with an adjuvant to stimulate the immune response. Such adjuvants include Freund's complete or incomplete adjuvant, RIBI (muramyl dipeptide) or ISCOM (immunostimulating complex). Such adjuvants may protect the polypeptide from rapid dispersion by encapsulating it in a local deposit, or they may contain substances which stimulate the host to secrete factors which are chemotactic for macrophages and other components of the immune system. If a polypeptide is being administered, the immunization schedule preferably involves two or more administrations of the polypeptide, spread out over a period of weeks, although a single administration of the polypeptide may also be used.
[0201] After immunization of an animal with a UCH-L1 antigen, antibodies and / or antibody-producing cells can be obtained from the animal. Anti-UCH-L1 antibody-containing serum can be obtained from the animal by bleeding or sacrificing the animal. The serum can be used as obtained from the animal, an immunoglobulin fraction can be obtained from the serum, or anti-UCH-L1 antibodies can be purified from the serum. The serum or immunoglobulins thus obtained are polyclonal and therefore have a range of heterogeneous characteristics.
[0202] Once an immune response is detected, for example, antibodies specific to the antigen UCH-L1 are detected in rat serum, the rat spleen is removed and spleen cells are isolated. The spleen cells are then fused to any suitable myeloma cells, for example, cells derived from SP20, a cell line available from American Type Culture Collection (ATCC, Manassas, Va., US), by well-known techniques. Hybridomas are selected and cloned by limiting dilution. Hybridoma clones are then assayed for cells secreting antibodies capable of binding to UCH-L1 by methods known in the art. Rats can be immunized with positive hybridoma clones to produce ascites fluid that generally contains high levels of antibodies.
[0203] In another embodiment, antibody-producing immortalized hybridomas can be prepared from the immunized animals. After immunization, the animals are sacrificed and splenic B cells are fused to immortal myeloma cells, as is well known in the art. See, e.g., Harlow and Lane, supra. In a preferred embodiment, the myeloma cells do not secrete immunoglobulin polypeptides (non-secretory cell lines). After fusion and antibiotic selection, the hybridomas are screened using UCH-L1 or a portion thereof or cells expressing UCH-L1. In a preferred embodiment, initial screening is performed using an enzyme-linked immunosorbent assay (ELISA) or radioimmunoassay (RIA), preferably an ELISA. An example of ELISA screening is provided in PCT Publication No. 00 / 37504.
[0204] Hybridomas producing anti-UCH-L1 antibodies are selected, cloned, and further screened for desired characteristics, including robust hybridoma growth, high antibody production, and desired antibody characteristics. Hybridomas can be cultured and expanded in vivo in syngeneic animals, animals lacking an immune system, such as nude mice, or in in vitro cell cultures. Methods for selecting, cloning, and expanding hybridomas are well known to those skilled in the art.
[0205] In a preferred embodiment, the hybridomas are rat hybridomas. In another embodiment, the hybridomas are made in a non-human, non-rat species, such as mouse, sheep, pig, goat, cow or horse. In yet another preferred embodiment, the hybridomas are human hybridomas, in which a human non-secretory myeloma is fused with a human cell expressing an anti-UCH-L1 antibody.
[0206] Antibody fragments that recognize specific epitopes can be produced by known techniques. For example, the Fab and F(ab')2 fragments of the present disclosure can be produced by proteolytic cleavage of immunoglobulin molecules using enzymes such as papain (resulting in two identical Fab fragments) or pepsin (resulting in an F(ab')2 fragment). The F(ab')2 fragment of an IgG molecule retains the two antigen-binding sites of the larger ("parent") IgG molecule, including both light chains (containing the light chain variable and constant regions), the CH1 domain of the heavy chain, and the disulfide-forming hinge region of the parent IgG molecule. Thus, the F(ab')2 fragment is capable of cross-linking antigen molecules in the same way as the parent IgG molecule.
[0207] (2) Anti-UCH-L1 monoclonal antibody using SLAM In another embodiment of the present disclosure, recombinant antibodies are produced from single isolated lymphocytes using a procedure referred to in the art as the selected lymphocyte antibody method (SLAM), as described in U.S. Patent No. 5,627,052; PCT Publication No. 92 / 02551 and Babcook et al., Proc. Natl. Acad. Sci. USA, 93:7843-7848 (1996). In this method, the antigen UCH-L1, a subunit of UCH-L1 or a fragment thereof is coupled to sheep red blood cells using a linker such as biotin, and a single cell, e.g., a lymphocyte from any one of the immunized animals, secreting the antibody of interest is screened using an antigen-specific hemolytic plaque assay, which is used to identify a single cell that secretes an antibody with specificity for UCH-L1. After identifying the antibody-secreting cells of interest, cDNAs for the heavy and light chain variable regions are rescued from the cells by reverse transcriptase PCR (RT-PCR), and these variable regions are then expressed in the context of an appropriate immunoglobulin constant region (e.g., a human constant region) in a mammalian host cell, such as a COS or CHO cell. Host cells transfected with the amplified immunoglobulin sequences derived from in vivo selected lymphocytes may then undergo further analysis and selection in vitro, for example, by panning the transfected cells to isolate cells expressing antibodies against UCH-L1. The amplified immunoglobulin sequences may be further manipulated in vitro, such as by in vitro affinity maturation methods. See, e.g., PCT Publication Nos. 97 / 29131 and 00 / 56772.
[0208] (3) Anti-UCH-L1 monoclonal antibody using transgenic animals In another embodiment of the disclosure, the antibodies are produced by immunizing a non-human animal that contains a portion or all of the human immunoglobulin loci with the UCH-L1 antigen. In one embodiment, the non-human animal is a XENOMOUSE® transgenic mouse, an engineered mouse strain that contains large fragments of the human immunoglobulin loci and is deficient in the production of mouse antibodies. See, e.g., Green et al., Nature Genetics, 7:13-21 (1994), and U.S. Patent Nos. 5,916,771; 5,939,598; 5,985,615; 5,998,209; 6,075,181; 6,091,001; 6,114,598, and 6,130,364. See also PCT Publication Nos. 91 / 10741; PCT Publication No. 94 / 02602; PCT Publication No. 96 / 34096; PCT Publication No. 96 / 33735; PCT Publication No. 98 / 16654; PCT Publication No. 98 / 24893; PCT Publication No. 98 / 50433; PCT Publication No. 99 / 45031; PCT Publication No. 99 / 53049; PCT Publication No. 00 / 09560, and PCT Publication No. 00 / 37504. XENOMOUSE® transgenic mice produce an adult-like human repertoire of fully human antibodies and generate antigen-specific human monoclonal antibodies. The XENOMOUSE® transgenic mice contain approximately 80% of the human antibody repertoire by introducing megabase-sized, germline-configured YAC fragments of human heavy chain and x light chain loci. See Mendez et al., Nature Genetics, 15:146-156 (1997); Green and Jakobovits, J. Exp. Med., 188:483-495 (1998), the disclosures of which are incorporated by reference.
[0209] (4) Anti-UCH-L1 monoclonal antibody using a recombinant antibody library In vitro methods may also be used to generate the antibodies of the present disclosure, where antibody libraries are screened to identify antibodies with the desired UCH-L1 binding specificity. Methods for such screening of recombinant antibody libraries are well known in the art, and are described, for example, in U.S. Pat. No. 5,223,409 (Ladner et al.); PCT Publication No. 92 / 18619 (Kang et al.); PCT Publication No. 91 / 17271 (Dower et al.); PCT Publication No. 92 / 20791 (Winter et al.); PCT Publication No. 92 / 15679 (Markland et al.); PCT Publication No. 93 / 01288 (Breitling et al.); PCT Publication No. 92 / 01047 (McCafferty et al.); PCT Publication No. 92 / 09690 (Garrard et al.); Fuchs et al., Bio / Technology, 9:1369-1372 (1991); Hay et al., Bio / Technology, 9:1369-1372 (1992 ... et al., Hum. Antibod. Hybrodomas, 3:81-85 (1992); Huse et al., Science, 246:1275-1281 (1989); McCafferty et al., Nature, 348:552-554 (1990); Griffiths et al., EMBOJ., 12:725-734 (1993); Hawkins et al., J. Mol. Biol. , 226:889-896 (1992); Clackson et al., Nature, 352:624-628 (1991); Gram et al., Proc. Natl. Acad. Sci. USA, 89:3576-3580 (1992); Garrard et al., Bio / Technology, 9:1373-1377 (1991); Hoogenboom et al., Nucl. Acids Res., 19:4133-4137 (1991); Barbas et al., Proc. Natl. Acad. Sci. USA, 88:7978-7982 (1991); U.S. Patent Application Publication No. 2003 / 0186374 and PCT Publication No. 97 / 29131.
[0210] The recombinant antibody library may be derived from a subject immunized with UCH-L1 or a portion of UCH-L1. Alternatively, the recombinant antibody library may be derived from a naive subject, i.e., a subject not immunized with UCH-L1, such as a human antibody library derived from a human subject not immunized with human UCH-L1. The antibodies of the present disclosure are selected by screening the recombinant antibody library with peptides comprising human UCH-L1, thereby selecting antibodies that recognize UCH-L1. Methods for performing such screening and selection are well known in the art, such as those described in the references in the preceding paragraph. The antibodies of the present disclosure having a specific binding affinity for UCH-L1, and which are isolated from human UCH-L1 by a specific K off To select an antibody of the present disclosure, such as an antibody that dissociates with a desired K off Surface plasmon resonance techniques known in the art can be used to select antibodies with specific rate constants. 50 To select an antibody of the present disclosure, such as an antibody with, standard methods known in the art for assessing inhibition of UCH-L1 activity can be used.
[0211] In one embodiment, the present disclosure relates to an isolated antibody or antigen-binding portion thereof that binds to human UCH-L1. Preferably, the antibody is a neutralizing antibody. In various embodiments, the antibody is a recombinant antibody or a monoclonal antibody.
[0212] For example, antibodies can also be generated using various phage display methods known in the art. In phage display methods, functional antibody domains are displayed on the surface of phage particles that carry the polynucleotide sequences encoding them. Such phage can be used to display antigen-binding domains expressed from a repertoire or combinatorial antibody library (e.g., human or murine). Phage expressing an antigen-binding domain that binds to the antigen of interest can be selected or identified with the antigen, for example, using labeled antigen or antigen bound or captured to a solid surface or bead. The phage used in these methods are typically filamentous phage that contain phage-expressed fd and M13 binding domains, together with Fab, Fv or disulfide-stabilized Fv antibody domains recombinantly fused to phage gene III or phage gene VIII proteins.Examples of phage display methods that can be used to generate antibodies include those described in Brinkmann et al., J. Immunol. Methods, 182:41-50 (1995); Ames et al., J. Immunol. Methods, 184:177-186 (1995); Kettleborough et al., Eur. J. Immunol., 24:952-958 (1994); Persic et al., Gene, 187:9-18 (1997); Burton et al., Advances in Immunology, 57:191-280 (1994); PCT Publication No. 92 / 01047; PCT Publication No. 90 / 02809; PCT Publication No. 91 / 10737; PCT Publication No. 92 / 01047; PCT Publication No. 92 / 18619; PCT Publication No. 93 / 11236; PCT Publication No. 95 / 15982; PCT Publication No. 95 / 20401 and U.S. Pat. Nos. 5,698,426 and 5,223,409. Nos. 5,403,484; 5,580,717; 5,427,908; 5,750,753; 5,821,047; 5,571,698; 5,427,908; 5,516,637; 5,780,225; 5,658,727; 5,733,743 and 5,969,108.
[0213] After phage selection, as described in the above references, the antibody coding regions from the phage can be isolated and used to generate whole antibodies, including human antibodies, or any other desired antigen-binding fragment, which can be expressed in any desired host, including mammalian cells, insect cells, plant cells, yeast, and bacteria, for example, as described in detail below. Techniques can also be utilized to recombinantly generate, for example, Fab fragments, Fab' fragments, and F(ab')2 fragments, using methods known in the art, such as those disclosed in PCT Publication No. 92 / 22324; Mullinax et al., BioTechniques, 12(6):864-869 (1992); Sawai et al., Am. J. Reprod. Immunol., 34:26-34 (1995), and Better et al., Science, 240:1041-1043 (1988). Examples of techniques that can be used to make single chain Fv antibodies include those described in U.S. Pat. Nos. 4,946,778 and 5,258,498; Huston et al., Methods in Enzymology, 203:46-88 (1991); Shu et al., Proc. Natl. Acad. Sci. USA, 90:7995-7999 (1993), and Skerra et al., Science, 240:1038-1041 (1988).
[0214] Other methods known in the art for screening large combinatorial libraries, which are alternatives to screening recombinant antibody libraries by phage display, can also be applied to identify the antibodies of the present disclosure. One type of alternative expression system is the expression system in which recombinant antibody libraries are expressed as RNA-protein fusions, as described in PCT Publication No. 98 / 31700 (Szostak and Roberts) and Roberts and Szostak, Proc. Natl. Acad. Sci. USA, 94:12297-12302 (1997). In this system, covalent fusions are created between the mRNA and the peptide or protein it encodes by in vitro translation of synthetic mRNA carrying the peptidyl acceptor antibiotic puromycin at its 3' end. Thus, specific mRNAs can be enriched from a complex mixture of mRNAs (e.g., combinatorial libraries) based on the properties of the encoded peptides or proteins, e.g., antibodies or portions thereof, such as the binding of the antibodies or portions thereof to bispecific antigens. Nucleic acid sequences encoding antibodies or portions thereof recovered from screening of such libraries can be expressed by recombinant means (e.g., in mammalian host cells) as described above and subjected to further affinity maturation by further rounds of screening of mRNA-peptide fusions in which mutations are introduced into the originally selected sequences, or by other methods for affinity maturation of recombinant antibodies in vitro as described above. A preferred example of this methodology is the PROfusion display technology.
[0215] In another approach, antibodies can also be made using yeast display methods known in the art. In yeast display methods, genetic methods are used to tether antibody domains to the yeast cell wall and display them on the surface of the yeast. In particular, such yeast can be used to display antigen-binding domains expressed from a repertoire or combinatorial antibody library (e.g., human or murine). Examples of yeast display methods that can be used to make antibodies include the yeast display method disclosed in U.S. Patent No. 6,699,658 (Wittrup et al.), which is incorporated herein by reference.
[0216] d. Preparation of recombinant UCH-L1 antibody Antibodies may be produced by any of a number of techniques known in the art, such as expression from a host cell in which expression vectors encoding the heavy and light chains are transfected into the host cell by standard techniques. The various forms of the term "transfection" are intended to encompass a wide variety of techniques commonly used for the introduction of exogenous DNA into prokaryotic or eukaryotic host cells, such as electroporation, calcium phosphate precipitation, DEAE-dextran transfection, and the like. Although it is possible to express the antibodies of the present disclosure in prokaryotic or eukaryotic host cells, expression of the antibodies in eukaryotic cells, and most preferably in mammalian host cells, is preferred, since such eukaryotic cells (and in particular mammalian cells) are more likely than prokaryotic cells to assemble, properly fold, and secrete immunologically active antibodies.
[0217] Exemplary mammalian host cells for expressing recombinant antibodies of the disclosure include Chinese hamster ovary (CHO cells) (including dhfr-CHO cells described in Urlaub and Chasin, Proc. Natl. Acad. Sci. USA, 77:4216-4220 (1980)), NS0 myeloma cells, COS cells, and SP2 cells, used with, for example, the DHFR selectable marker described in Kaufman and Sharp, J. Mol. Biol., 159:601-621 (1982). When a recombinant expression vector encoding an antibody gene is introduced into a mammalian host cell, the antibody is produced by culturing the host cell for a period of time sufficient to allow for expression of the antibody in the host cell, or more preferably, secretion of the antibody into the culture medium in which the host cell was grown. The antibody may be recovered from the culture medium using standard protein purification methods.
[0218] The host cells may also be used to generate functional antibody fragments, such as Fab fragments or scFv molecules. It is understood that variations on the above procedures may be performed. For example, it may be desirable to transfect the host cells with DNA encoding functional fragments of the light and / or heavy chains of the antibodies of the present disclosure. Recombinant DNA technology may also be used to remove some or all of the DNA encoding either or both of the light and heavy chains that are not necessary for binding to the antigen of interest. Molecules expressed from such truncated DNA molecules are also encompassed by the antibodies of the present disclosure. In addition, bifunctional antibodies, in which one heavy chain and one light chain is an antibody of the present disclosure (i.e., an antibody that binds human UCH-L1) and the other heavy and light chains are specific for an antigen other than human UCH-L1, may also be generated by crosslinking an antibody of the present disclosure to a second antibody via standard chemical crosslinking methods.
[0219] In a preferred system for recombinant expression of the antibody or antigen-binding portion thereof of the present disclosure, a recombinant expression vector encoding both the antibody heavy chain and the antibody light chain is introduced into dhfr-CHO cells by calcium phosphate-mediated transfection. Within the recombinant expression vector, the antibody heavy and light chain genes are each operably linked to a CMV enhancer / AdMLP promoter regulatory element to drive high level transcription of the genes. The recombinant expression vector also carries a DHFR gene, allowing for selection of CHO cells transfected with the vector using methotrexate selection / amplification. The selected transformant host cells are cultured to allow expression of the antibody heavy and light chains, and intact antibody is recovered from the culture medium. Standard molecular biology techniques are used to prepare the recombinant expression vector, transfect the host cells, select for transformants, culture the host cells, and recover the antibody from the culture medium. Still further, the present disclosure provides a method of synthesizing a recombinant antibody of the present disclosure by culturing the host cells of the present disclosure in a suitable culture medium until the recombinant antibody of the present disclosure is synthesized. The method can further include isolating the recombinant antibody from the culture medium.
[0220] (1) Humanized antibodies A humanized antibody may be an antibody, or a variant, derivative, analog or portion thereof, that immunospecifically binds to an antigen of interest and comprises a framework (FR) region having substantially the amino acid sequence of a human antibody and a complementarity determining region (CDR) having substantially the amino acid sequence of a non-human antibody. A humanized antibody may be derived from a non-human species antibody that binds to a desired antigen and has one or more complementarity determining regions (CDRs) derived from the non-human species and a framework region derived from a human immunoglobulin molecule.
[0221] As used herein, the term "substantially" in the context of a CDR refers to a CDR that has an amino acid sequence that is at least 90%, at least 95%, at least 98% or at least 99% identical to the amino acid sequence of a non-human antibody CDR. A humanized antibody comprises substantially all of at least one, but typically two, variable domains (Fab, Fab', F(ab')2, FabC, Fv) in which all or substantially all of the CDR regions correspond to the CDR regions of a non-human immunoglobulin (i.e., donor antibody) and all or substantially all of the framework regions are those of a human immunoglobulin consensus sequence. According to one embodiment, the humanized antibody also comprises at least a portion of an immunoglobulin constant region (Fc), typically the Fc region of a human immunoglobulin. In some embodiments, the humanized antibody contains both a light chain and at least the variable domains of a heavy chain. The antibody may also comprise the CH1, hinge, CH2, CH3 and CH4 regions of the heavy chain. In some embodiments, a humanized antibody contains only a humanized light chain. In some embodiments, a humanized antibody contains only a humanized heavy chain. In specific embodiments, a humanized antibody contains only humanized variable domains of the light and / or heavy chain.
[0222] The humanized antibody may be selected from any class of immunoglobulins, including IgM, IgG, IgD, IgA, and IgE, and any isotype, including, but not limited to, IgG1, IgG2, IgG3, and IgG4. The humanized antibody may comprise sequences from more than one class or isotype, and particular constant domains may be selected to optimize desired effector functions, using techniques well known in the art.
[0223] The framework and CDR regions of a humanized antibody need not correspond exactly to the parental sequences, for example, the donor antibody CDR or consensus framework may be mutagenized by substitution, insertion and / or deletion of at least one amino acid residue such that the CDR or framework residue at this site does not correspond to the donor antibody or consensus framework. However, in one embodiment, such mutations are not extensive mutations. Typically, at least 90%, at least 95%, at least 98% or at least 99% of the humanized antibody residues correspond to the residues of the parental FR and CDR sequences. The term "consensus framework" as used herein refers to a framework region in a consensus immunoglobulin sequence. The term "consensus immunoglobulin sequence" as used herein refers to a sequence formed from the most frequently occurring amino acids (or nucleotides) in a family of related immunoglobulin sequences (see, for example, Winnaker, "From Genes to Clones" (Verlagsgesellschaft, Weinheim, Germany, 1987)). In a family of immunoglobulins, each position in the consensus sequence is occupied by the amino acid that occurs most frequently at that position in the family. If two amino acids occur equally frequently, either can be included in the consensus sequence.
[0224] Humanized antibodies can be designed to minimize unwanted immunological responses to rodent anti-human antibodies that limit the duration and effectiveness of therapeutic applications of these moieties in human recipients. A humanized antibody can have one or more amino acid residues introduced into it from a source that is non-human. Such non-human residues are often referred to as "import" residues that are typically taken from the variable domain. Humanization can be performed by substituting hypervariable region sequences for the corresponding sequences of a human antibody. Such "humanized" antibodies are thus chimeric antibodies in which substantially less than an intact human variable domain has been substituted by the corresponding sequence from a non-human species. See, for example, U.S. Pat. No. 4,816,567, the contents of which are incorporated herein by reference. A humanized antibody can be a human antibody in which some hypervariable region residues, and possibly some FR residues, have been substituted by residues from analogous sites in rodent antibodies. Humanization or engineering of the antibodies of the present disclosure may be carried out using any known method, including but not limited to those described in U.S. Pat. Nos. 5,723,323; 5,976,862; 5,824,514; 5,817,483; 5,814,476; 5,763,192; 5,723,323; 5,766,886; 5,714,352; 6,204,023; 6,180,370; 5,693,762; 5,530,101; 5,585,089; 5,225,539; and 4,816,567.
[0225] Humanized antibodies may retain high affinity for UCH-L1 and other favorable biological properties. Humanized antibodies may be prepared by analyzing parental sequences and various conceptual humanized products using three-dimensional models for the parental and humanized sequences. Three-dimensional immunoglobulin models are publicly available. Computer programs are available which illustrate and display possible three-dimensional conformational structures of selected candidate immunoglobulin sequences. Inspection of these representations allows analysis of the residues for their key role in the functioning of the candidate immunoglobulin sequence, i.e., for residues that affect the ability of the candidate immunoglobulin to bind its antigen. In this way, FR residues may be selected and combined from the recipient and import sequences such that the desired antibody characteristic, such as increased affinity for UCH-L1, is achieved. In general, hypervariable region residues may be directly and most substantially involved in influencing antigen binding.
[0226] As an alternative to humanization, human antibodies (also referred to herein as "fully human antibodies") can be produced. For example, human antibodies can be isolated from libraries via PROfusion and / or yeast-related technologies. It is also possible to produce transgenic animals (e.g., mice that are capable, upon immunization, of producing a full repertoire of human antibodies in the absence of endogenous immunoglobulin production). For example, the expression of the antibody heavy chain joining region (JC) in chimeric and germline mutant mice can be expressed in a variety of ways. HHomozygous deletion of the .) gene results in complete inhibition of endogenous antibody production. Transfer of the human germ-line immunoglobulin gene array into such germ-line mutant mice results in the production of human antibodies upon antigen challenge. Humanized or fully human antibodies may be prepared according to the methods described in U.S. Pat. Nos. 5,770,429; 5,833,985; 5,837,243; 5,922,845; 6,017,517; 6,096,311; 6,111,166; 6,270,765; 6,303,755; 6,365,116; 6,410,690; 6,682,928 and 6,984,720, the contents of each of which are incorporated herein by reference.
[0227] e. Anti-UCH-L1 antibody Anti-UCH-L1 antibodies may be generated using the techniques described above as well as using routine techniques known in the art. In some embodiments, the anti-UCH-L1 antibody is available from United State Biological (product number: 031320), Cell Signaling Technology (product number: 3524), Sigma-Aldrich (product number: HPA005993), Santa Cruz Biotechnology, Inc. (product number: sc-58593 or sc-58594), R&D Systems (product number: MAB6007), Novus Biologicals (product number: NB600-1160), Biobyt (product number: orb33715), Enzo Life Sciences, Inc. (product number: ADI-905-520-1), Bio-Rad (product number: VMA00004), BioVision (product number: 6130-50), Abcam (product number: ab75275 or ab104938), Invitrogen The anti-UCH-L1 antibody may be an unconjugated UCH-L1 antibody, such as the UCH-L1 antibody commercially available from ThermoFisher Scientific (Model No.: MA1-46079, MA5-17235, MA1-90008, or MA1-83428), EMD Millipore (Model No.: MABN48) or Sino Biological Inc. (Model No.: 50690-R011). The anti-UCH-L1 antibody may be conjugated to a fluorophore, such as the conjugated UCH-L1 antibody commercially available from BioVision (Model No.: 6960-25) or Aviva Systems Biology (Model No.: OAAF01904-FITC).
[0228] Alternatively, antibodies described in WO2018 / 067474, WO2018 / 081649, U.S. Patent No. 11,078,298, U.S. Patent Application Publication No. 2019 / 0502127, and / or Bazarian et al., "Accuracy of a rapid GFAP / UCH-L1 test for the prediction of intracranial injuries on head CT after mild traumatic brain injury," Acad. Emerg. Med. (August 6, 2021), the contents of which are incorporated by reference herein, may be used.
[0229] 6. Methods for Measuring GFAP Levels In the above-described method, GFAP level can be measured by any means. In some embodiments, measuring the level of GFAP comprises contacting the sample with a first specific binding member and a second specific binding member. In some embodiments, the first specific binding member is a capture antibody and the second specific binding member is a detection antibody. In some embodiments, the step of measuring the level of GFAP includes contacting the sample simultaneously or sequentially, in any order, with (1) a capture antibody (e.g., a GFAP capture antibody) that binds to an epitope on GFAP or a GFAP fragment to form a capture antibody-GFAP antigen complex (e.g., a GFAP capture antibody-GFAP antigen complex), and (2) a detection antibody (e.g., a GFAP detection antibody) that contains a detectable label and binds to an epitope on GFAP to which the capture antibody is not bound to form a GFAP antigen-detection antibody complex (e.g., a GFAP antigen-GFAP detection antibody complex) to form a capture antibody-GFAP antigen-detection antibody complex (e.g., a GFAP capture antibody-GFAP antigen-GFAP detection antibody complex), and measuring the amount or concentration of GFAP in the sample based on a signal generated by the detectable label in the capture antibody-GFAP antigen-detection antibody complex.
[0230] In some embodiments, the first specific binding member is immobilized on a solid support. In some embodiments, the second specific binding member is immobilized on a solid support. In some embodiments, the first specific binding member is a GFAP antibody, as described below.
[0231] In some embodiments, the sample is diluted or undiluted. In some embodiments, the sample is about 1 to about 100 microliters. In some embodiments, the sample is about 10 to about 90 microliters. In some embodiments, the sample is about 1 microliter, about 5 microliters, about 10 microliters, about 20 microliters, about 30 microliters, about 40 microliters, about 50 microliters, about 60 microliters, about 70 microliters, about 80 microliters, or about 90 microliters. In some embodiments, the sample is about 1 to about 85 microliters, about 1 to about 80 microliters, about 1 to about 75 microliters, about 1 to about 65 microliters, about 1 to about 50 microliters, about 1 to about 40 microliters, about 1 to about 30 microliters, about 1 to about 20 microliters, about 1 to about 10 microliters, or about 1 to about 5 microliters. In some embodiments, the sample is about 1 microliter, about 2 microliters, about 3 microliters, about 4 microliters, about 5 microliters, about 6 microliters, about 7 microliters, about 8 microliters, about 9 microliters, about 10 microliters, about 11 microliters, about 12 microliters, about 13 microliters, about 14 microliters, about 15 microliters, about 16 microliters, about 17 microliters, about 18 microliters, about 19 microliters, about 20 microliters, about 21 microliters, about 22 microliters, about 23 microliters, about 24 microliters, about 25 microliters, about 26 microliters, about 27 microliters, about 28 microliters, about 29 microliters, about 30 microliters, about 40 microliters, about 50 microliters, about 60 microliters, about 70 microliters, about 80 microliters, about 90 microliters, or about 100 microliters. In some embodiments, the sample is about 1 to about 150 microliters or less, or about 1 to about 80 microliters or less.
[0232] GFAP antibody The methods described herein may use isolated antibodies that specifically bind to glial fibrillary acidic protein ("GFAP") (or fragments thereof), referred to as "GFAP antibodies." GFAP antibodies may be used to assess GFAP status as a measure of traumatic brain injury, to detect the presence of GFAP in a sample, to quantitate the amount of GFAP present in a sample, or to detect the presence of GFAP in a sample and quantitate the amount of GFAP in a sample.
[0233] Glial fibrillary acidic protein (GFAP) Glial fibrillary acidic protein (GFAP) is a 50 kDa cytoplasmic fibrillary protein that constitutes part of the cytoskeleton in astrocytes and has been demonstrated to be the most specific marker for cells of astrocyte origin. GFAP protein is encoded by the GFAP gene in humans. GFAP is the major intermediate fiber of mature astrocytes. In the central rod domain of the molecule, GFAP shares a large structural homology with other intermediate fibers. GFAP is involved in astrocyte motility and shape by providing structural stability to astrocyte processes. Glial fibrillary acidic protein and its degradation products (GFAP-BDP) are brain-specific proteins released into the blood as part of the pathophysiological response after traumatic brain injury (TBI). Following injury to the human CNS caused by trauma, genetic injury or chemicals, astrocytes proliferate and show extensive hypertrophy of cell bodies and cell processes, and GFAP is significantly upregulated. In contrast, there is a progressive loss of GFAP production in growing astrocytic malignancies.GFAP can also be detected in Schwann cells, gastrointestinal glial cells, salivary gland neoplasms, metastatic renal carcinomas, epiglottic cartilage, pituitary cells, immature oligodendrocytes, papillary meningiomas, and myoepithelial cells of the mammary gland.
[0234] Human GFAP can have the following amino acid sequence:
[0235] [ka]
[0236] The human GFAP may be a fragment or variant of SEQ ID NO: 2. The fragment of GFAP may be between 5 and 400 amino acids, between 10 and 400 amino acids, between 50 and 400 amino acids, between 60 and 400 amino acids, between 65 and 400 amino acids, between 100 and 400 amino acids, between 150 and 400 amino acids, between 100 and 300 amino acids or between 200 and 300 amino acids in length. The fragment may comprise consecutive amino acids from SEQ ID NO: 2. The fragment or variant of human GFAP of SEQ ID NO: 2 may be a GFAP degradation product (BDP). The GFAP BDP may be 38 kDa, 42 kDa (faint band: 41 kDa), 47 kDa (faint band: 45 kDa); 25 kDa (faint band: 23 kDa); 19 kDa or 20 kDa. In some embodiments, a human GFAP fragment or variant can be a GFAP BDP comprising between 5 and 25 amino acids, between 5 and 50 amino acids, between 5 and 100 amino acids, or between 5 and 200 amino acids.
[0237] b.GFAP recognition antibody The antibody is an antibody that binds to GFAP, a fragment thereof, an epitope of GFAP or a variant thereof. The antibody may be a fragment of an anti-GFAP antibody or a variant or derivative thereof. The antibody may be a polyclonal or monoclonal antibody. The antibody may be a chimeric antibody, a single chain antibody, an affinity matured antibody, a human antibody, a humanized antibody, a fully human antibody or an antibody fragment such as a Fab fragment or a mixture thereof. The antibody fragment or derivative may include a F(ab')2 fragment, an Fv fragment or a scFv fragment. The antibody derivative may be produced by peptidomimetics. Furthermore, techniques described for producing single chain antibodies may be adapted to produce single chain antibodies.
[0238] The anti-GFAP antibody may be a chimeric or humanized anti-GFAP antibody. In one embodiment, both the humanized and chimeric antibodies are monovalent. In one embodiment, both the humanized and chimeric antibodies comprise a single Fab region linked to an Fc region.
[0239] Human antibodies can be derived from phage display technology or transgenic mice expressing human immunoglobulin genes. Human antibodies can be generated and isolated as a result of a human in vivo immune response. See, for example, Funaro et al., BMC Biotechnology, 2008(8):85. Thus, the antibody can be a product of a human and may not be an animal repertoire. Because the antibody is of human origin, the risk of reactivity against self-antigens can be minimized. Alternatively, standard yeast display libraries and yeast display technology can be used to select and isolate human anti-GFAP antibodies. For example, a library of naive human single chain variable fragments (scFv) can be used to select human anti-GFAP antibodies. Transgenic animals can be used to express human antibodies.
[0240] A humanized antibody can be an antibody molecule derived from a non-human species that binds a desired antigen, having one or more complementarity determining regions (CDRs) from the non-human species and a framework region from a human immunoglobulin molecule.
[0241] The antibody is distinguishable from known antibodies in that it possesses a different biological function than antibodies known in the art.
[0242] (1) Epitope The antibody may immunospecifically bind to GFAP (SEQ ID NO: 2), a fragment or variant thereof. The antibody may immunospecifically recognize and bind to at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9 or at least 10 amino acids within the epitope region. The antibody may immunospecifically recognize and bind to an epitope having at least 3 consecutive amino acids, at least 4 consecutive amino acids, at least 5 consecutive amino acids, at least 6 consecutive amino acids, at least 7 consecutive amino acids, at least 8 consecutive amino acids, at least 9 consecutive amino acids or at least 10 consecutive amino acids within the epitope region.
[0243] c. Preparation / production of antibodies Antibodies may be prepared by any of a variety of techniques, including techniques well known to those of skill in the art. In general, antibodies may be produced by conventional techniques to allow for the production of antibodies, which may be recombinant, or by cell culture techniques, including the generation of monoclonal antibodies by transfection of antibody genes, heavy and / or light chains into a suitable bacterial or mammalian cell host. The various forms of the term "transfection" are intended to encompass a wide variety of techniques commonly used for the introduction of exogenous DNA into prokaryotic or eukaryotic host cells, such as electroporation, calcium phosphate precipitation, DEAE-dextran transfection, and the like. Although antibodies can be expressed in prokaryotic or eukaryotic host cells, expression of antibodies in eukaryotic cells is preferred, and expression in mammalian host cells is most preferred, since such eukaryotic cells (and, in particular, mammalian cells) are more likely than prokaryotic cells to assemble, properly fold, and secrete immunologically active antibodies.
[0244] Exemplary mammalian host cells for expressing recombinant antibodies include Chinese hamster ovary (CHO cells) used with a DHFR selectable marker as described, for example, in Kaufman and Sharp, J. Mol. Biol., 159:601-621 (1982) (including dhfr-CHO cells described in Urlaub and Chasin, Proc. Natl. Acad. Sci. USA, 77:4216-4220 (1980)), NS0 myeloma cells, COS cells, and SP2 cells. When a recombinant expression vector encoding an antibody gene is introduced into a mammalian host cell, the antibody is produced by culturing the host cell for a sufficient time to allow for expression of the antibody within the host cell or, more preferably, secretion of the antibody into the culture medium in which the host cell is grown. The antibody can be recovered from the culture medium using standard protein purification methods.
[0245] The host cells may also be used to generate functional antibody fragments, such as Fab fragments or scFv molecules. It is understood that variations on the above procedures may be performed. For example, it may be desirable to transfect the host cells with DNA encoding functional fragments of the light and / or heavy chains of the antibody. Recombinant DNA technology may also be used to remove some or all of the DNA encoding either or both of the light and heavy chains that is not necessary for binding to the antigen of interest. Molecules expressed from such truncated DNA molecules are also encompassed by antibody. In addition, bifunctional antibodies, in which one heavy and one light chain is an antibody (i.e., binds human GFAP) and the other heavy and light chains are specific for an antigen other than human GFAP, may be generated by crosslinking the antibody to a second antibody via standard chemical crosslinking methods.
[0246] In a preferred system for recombinant expression of an antibody or antigen-binding portion thereof, a recombinant expression vector encoding both the antibody heavy chain and the antibody light chain is introduced into dhfr-CHO cells by calcium phosphate-mediated transfection. Within the recombinant expression vector, the antibody heavy and light chain genes are each operably linked to a CMV enhancer / AdMLP promoter regulatory element to drive high level transcription of the genes. The recombinant expression vector also carries a DHFR gene, allowing for selection of CHO cells transfected with the vector using methotrexate selection / amplification. The selected transformant host cells are cultured to allow expression of the antibody heavy and light chains, and intact antibody is recovered from the culture medium. Standard molecular biology techniques are used to prepare the recombinant expression vector, transfect the host cells, select for transformants, culture the host cells, and recover the antibody from the culture medium. Still further, the method of synthesizing a recombinant antibody can be done by culturing the host cells in a suitable culture medium until the recombinant antibody is synthesized. The method can further include isolating the recombinant antibody from the culture medium.
[0247] Methods for preparing monoclonal antibodies include the preparation of immortal cell lines capable of producing antibodies with the desired specificity. Such cell lines can be made from spleen cells obtained from immunized animals. Animals can be immunized with GFAP or fragments and / or variants thereof. The peptide used to immunize the animals can include amino acids encoding human Fc, e.g., the fragment crystallizable region or tail region of a human antibody. The spleen cells can then be immortalized, e.g., by fusion with a myeloma cell fusion partner. Various fusion methods can be utilized. For example, spleen cells and myeloma cells can be combined with a non-ionic detergent for a few minutes and then plated at low density on a selection medium that supports the growth of hybrid cells but not myeloma cells. One such technique uses hypoxanthine, aminopterin, thymidine (HAT) selection. Another technique involves electrofusion. After a sufficient time, usually about 1-2 weeks, hybrid colonies can be observed. Single colonies are selected and their culture supernatants are tested for binding activity to the polypeptide. Hybridomas with high reactivity and specificity can be used.
[0248] Monoclonal antibodies may be isolated from the supernatant of growing hybridoma colonies. In addition, various techniques may be used to enhance yields, such as injection of the hybridoma cell line into the peritoneal cavity of a suitable vertebrate host, such as a mouse. Monoclonal antibodies may then be collected from the ascites fluid or blood. Contaminants may be removed from the antibody by conventional techniques, such as chromatography, gel filtration, precipitation, and extraction. Affinity chromatography is one example of a method that may be used in the process to purify the antibody.
[0249] The proteolytic enzyme papain preferentially cleaves IgG molecules into several fragments, two of which (F(ab) fragments) contain covalent heterodimers each containing an intact antigen-binding site. The enzyme pepsin can cleave IgG molecules into several fragments, including the F(ab')2 fragment, which contains both antigen-binding sites.
[0250] Fv fragments can be generated by preferential proteolytic cleavage of IgM, but in rare cases, IgG or IgA immunoglobulin molecules. Fv fragments can be derived using recombinant methods. Fv fragments contain a non-covalent VH::VL heterodimer that contains an antigen-binding site that retains much of the antigen recognition and binding capabilities of the native antibody molecule.
[0251] Each antibody, antibody fragment or derivative may comprise a set of heavy and light chain complementarity determining regions ("CDRs") interposed between a set of heavy and light chain frameworks ("FRs") that provide support for the CDRs and define the spatial relationship of the CDRs to each other. The set of CDRs may contain three hypervariable regions, consisting of heavy chain V regions or light chain V regions.
[0252] Other suitable methods of making or isolating antibodies with the requisite specificity may be used, including, but not limited to, selecting recombinant antibodies from peptide or protein libraries (e.g., but not limited to, display libraries such as bacteriophage libraries, ribosomal libraries, oligonucleotide libraries, RNA libraries, cDNA libraries, yeast libraries, etc.) commercially available from a variety of commercial sources, such as Cambridge Antibody Technologies (Cambridgeshire, UK), MorphoSys (Martinsreid / Planegg, Del.), Biovation (Aberdeen, Scotland, UK), BioInvent (Lund, Sweden), using methods known in the art. See U.S. Patent Nos. 4,704,692; 5,723,323; 5,763,192; 5,814,476; 5,817,483; 5,824,514; and 5,976,862. An alternative method relies on immunization of transgenic animals capable of generating a repertoire of human antibodies (e.g., SCID mice, Nguyen et al. (1997), Microbiol. Immunol., 41:901-907; Sandhu et al. (1996), Crit. Rev. Biotechnol., 16:95-118; Eren et al. (1998), Immunol., 93:154-161), as known in the art and / or described herein.Such techniques include ribosome display (Hanes et al. (1997), Proc. Natl. Acad. Sci. USA, 94:4937-4942; Hanes et al. (1998), Proc. Natl. Acad. Sci. USA, 95:14130-14135); single cell antibody generation techniques (e.g., the selected lymphocyte antibody assay ("SLAM") (U.S. Patent No. 5,627,052; Wen et al. (1987) J. Immunol., 17:887-892; Babcook et al. (1996), Proc. Natl. Acad. Sci. USA, 93:7843-7848); gel microdroplets and flow cytometry (Powell et al. (1990), Biotechnol., 8:333-337; One Cell Systems (Cambridge, Mass.); Gray et al. (1995), J. Imm. Meth., 182:155-163; Kenny et al. (1995), Bio / Technol., 13:787-790); B cell selection (Steenbakkers et al. (1994), Molec. Biol. Reports, 19:125-134 (1994)).
[0253] Affinity matured antibodies can be produced by any one of a number of procedures known in the art, see, e.g., Marks et al., BioTechnology, 10:779-783 (1992), which describes affinity maturation by VH and VL domain shuffling. Random mutagenesis of CDR and / or framework residues has been described by Barbas et al., Proc. Nat. Acad. Sci. USA, 91:3809-3813 (1994); Schier et al., Gene, 169:147-155 (1995); Yelton et al., J. Immunol., 155:1994-2004 (1995); Jackson et al., J. Immunol., 154(7):3310-3319 (1995); Hawkins et al., J. Mol. Biol., 226:889-896 (1992). Selective mutations at selective mutagenesis positions and contact or hypermutation positions with activity enhancing amino acid residues are described in U.S. Patent No. 6,914,128 B1.
[0254] Antibody variants may be prepared using delivery of a polynucleotide encoding the antibody to a suitable host, e.g., to provide transgenic animals or mammals, such as goats, cows, horses, sheep, and others, which produce such antibodies in their milk. Such methods are known in the art and described, for example, in U.S. Patent Nos. 5,827,690; 5,849,992; 4,873,316; 5,849,992; 5,994,616; 5,565,362; and 5,304,489.
[0255] Antibody variants may be prepared by delivering polynucleotides to obtain transgenic plants and cultured plant cells (including, but not limited to, tobacco, corn, and duckweed) that produce such antibodies, specified portions, or variants in plant parts or cells cultured therefrom. For example, Cramer et al. (1999) Curr. Top. Microbiol. Immunol. 240:95-118 and references cited therein describe the production of transgenic tobacco leaves that express large amounts of recombinant proteins, for example, using inducible promoters. Transgenic corn has been used to express mammalian proteins at commercial production levels with biological activity equivalent to those produced in other recombinant systems or purified from natural sources. See, for example, Hood et al., Adv. Exp. Med. Biol. (1999) 464:127-147 and references cited therein. Antibody variants have also been produced in large quantities from transgenic plant seeds containing antibody fragments such as single chain antibodies (scFv), including tobacco seeds and potato tubers. See, e.g., Conrad et al. (1998) Plant Mol. Biol. 38:101-109 and references cited therein. Thus, antibodies may be produced using transgenic plants according to known methods.
[0256] Antibody derivatives can be produced, for example, by adding foreign sequences to modify immunogenicity or to reduce, enhance or modify binding, affinity, on-rate, off-rate, avidity, specificity, half-life or any other suitable characteristic. Generally, part or all of the non-human or human CDR sequences are maintained, while the non-human sequences of the variable and constant regions are replaced with human or other amino acids.
[0257] A small antibody fragment may be a diabody having two antigen-binding sites, where the fragment comprises a heavy chain variable domain (VH) connected to a light chain variable domain (VL) (VH VL) on the same polypeptide chain. See, e.g., EP 404,097; WO 93 / 1161 and Hollinger et al. (1993), Proc. Natl. Acad. Sci. USA, 90:6444-6448. By using a linker that is too short to allow pairing between the two domains on the same chain, the domains are forced to pair with complementary domains on another chain and create two antigen-binding sites. See also U.S. Pat. No. 6,632,926 by Chen et al., which is incorporated by reference in its entirety and which also discloses antibody mutants in which one or more amino acids are inserted into a hypervariable region of a parent antibody and which have a binding affinity for a target antigen that is at least about two-fold stronger than the binding affinity of the parent antibody for that antigen.
[0258] The antibody may be a linear antibody. Procedures for making linear antibodies are known in the art and are described in Zapata et al. (1995), Protein Eng., 8(10):1057-1062. Briefly, these antibodies contain a pair of tandem Fd segments (VH-CH1-VH-CH1) that form a pair of antigen-binding regions. Linear antibodies can be bispecific or monospecific.
[0259] Antibodies can be recovered and purified from recombinant cell culture by known methods, including, but not limited to, Protein A purification, ammonium sulfate or ethanol precipitation, acid extraction, anion or cation exchange chromatography, phosphocellulose chromatography, hydrophobic interaction chromatography, affinity chromatography, hydroxylapatite chromatography, and lectin chromatography. High performance liquid chromatography ("HPLC") may also be used for purification.
[0260] It may be useful to detectably label the antibody. Methods for conjugating the antibody to these agents are known in the art. By way of example only, the antibody may be labeled with a detectable moiety such as a radioactive atom, a chromophore, a fluorophore, etc. Such labeled antibodies may be used for diagnostic methods in vivo or in an isolated test sample. Such labeled antibodies may be linked to a cytokine, a ligand, another antibody. Suitable agents for coupling to antibodies to achieve an anti-tumor effect include cytokines, such as interleukin 2 (IL-2) and tumor necrosis factor (TNF); photosensitizers for use in photodynamic therapy, including aluminum (III) phthalocyanine tetrasulfonate, hematoporphyrin and phthalocyanines; radionuclides, such as iodine-131 (131I), yttrium-90 (90Y), bismuth-212 (212Bi), bismuth-213 (213Bi), technetium-99m (99mTc), rhenium-186 (186Re) and rhenium-188 (188Re); antibiotics, such as doxorubicin, adriamycin, daunorubicin, methotrexate, daunomycin, neocarzinostatin and carboplatin; bacterial, plant and other toxins, such as diphtheria toxin. , Pseudomonas exotoxin A, Staphylococcal enterotoxin A, abrin-A toxin, ricin A (deglycosylated ricin A and native ricin A), TGF-alpha toxin, cytotoxin from Chinese cobra (Naja atra) and gelonin (a plant toxin); ribosome-inactivating proteins from plants, bacteria and fungi, such as restrictocin (a ribosome-inactivating protein produced by Aspergillus restrictus), saporin (a ribosome-inactivating protein from Saponaria officinalis) and RNase; tyrosine kinase inhibitors; ly207702 (a difluorinated purine nucleoside); liposomes containing anticystants (e.g., toxins, antisense oligonucleotides encoding methotrexate, plasmids, etc.); and other antibodies or antibody fragments, such as F(ab).
[0261] The production of antibodies through hybridoma technology, selected lymphocyte antibody technique (SLAM), transgenic animals and the use of recombinant antibody libraries are described in more detail below.
[0262] (1) Anti-GFAP monoclonal antibody using hybridoma technology Monoclonal antibodies can be prepared using a wide variety of techniques known in the art, including the use of hybridoma, recombinant, and phage display technologies, or a combination thereof. For example, monoclonal antibodies can be produced using hybridoma techniques known in the art and including those taught in, for example, Harlow et al., Antibodies: A Laboratory Manual, 2nd ed. (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, 1988); Hammerling et al., In Monoclonal Antibodies and T-Cell Hybridomas (Elsevier, NY, 1981). It should also be noted that the term "monoclonal antibody" as used herein is not limited to antibodies produced by hybridoma technology. The term "monoclonal antibody" refers to an antibody derived from a single clone, including any eukaryotic, prokaryotic, or phage clone, and not the method by which it is produced.
[0263] The monoclonal antibodies produced by the method as well as the method of producing the antibodies may include a step of culturing hybridoma cells secreting the antibodies of the present disclosure, where the hybridomas are preferably produced by fusing spleen cells isolated from an animal, e.g., a rat or mouse, immunized with GFAP with myeloma cells, and then screening the hybridomas resulting from the fusion for hybridoma clones secreting antibodies capable of binding to the polypeptides of the present disclosure. Briefly, rats can be immunized with GFAP antigen. In a preferred embodiment, the GFAP antigen is administered with an adjuvant to stimulate the immune response. Such adjuvants include Freund's complete or incomplete adjuvant, RIBI (muramyl dipeptide) or ISCOM (immunostimulating complex). Such adjuvants may protect the polypeptide from rapid dispersion by encapsulating it in a localized deposit, or such adjuvants may contain substances which stimulate the host to secrete factors which are chemotactic for macrophages and other components of the immune system. If a polypeptide is being administered, the immunization schedule preferably involves two or more administrations of the polypeptide spread out over a period of weeks, although a single administration of the polypeptide may also be used.
[0264] After immunization of an animal with a GFAP antigen, antibodies and / or antibody-producing cells can be obtained from the animal. Anti-GFAP antibody-containing serum can be obtained from the animal by bleeding the animal or sacrificing the animal. The serum can be used as obtained from the animal, an immunoglobulin fraction can be obtained from the serum, or the anti-GFAP antibodies can be purified from the serum. The serum or immunoglobulins thus obtained are polyclonal and therefore have a heterogeneous set of characteristics.
[0265] Once an immune response is detected, for example, in rat serum, antibodies specific to the antigen GFAP are detected, the rat spleen is removed and spleen cells are isolated.The spleen cells are then fused to any suitable myeloma cells, for example, cells derived from SP20, a cell line available from American Type Culture Collection (ATCC, Manassas, Va., US), by well-known techniques.Hybridomas are selected and cloned by limiting dilution.The hybridoma clones are then assayed for cells secreting antibodies capable of binding to GFAP by methods known in the art.By immunizing rats with positive hybridoma clones, ascites fluid that generally contains high levels of antibodies can be produced.
[0266] In another embodiment, antibody-producing immortalized hybridomas can be prepared from the immunized animals. After immunization, the animals are sacrificed and splenic B cells are fused to immortal myeloma cells as known in the art. See, e.g., Harlow and Lane, supra. In a preferred embodiment, the myeloma cells do not secrete immunoglobulin polypeptides (non-secretory cell lines). After fusion and antibiotic selection, the hybridomas are screened using GFAP or a portion thereof or cells expressing GFAP. In a preferred embodiment, initial screening is performed using an enzyme-linked immunosorbent assay (ELISA) or radioimmunoassay (RIA), preferably an ELISA. An example of ELISA screening is provided in PCT Publication No. 00 / 37504.
[0267] Hybridomas producing anti-GFAP antibodies are selected, cloned, and further screened for desired characteristics, including robust hybridoma growth, high antibody production, and desired antibody characteristics. Hybridomas can be cultured and expanded in vivo in syngeneic animals, animals lacking an immune system, such as nude mice, or in in vitro cell culture. Methods for selecting, cloning, and expanding hybridomas are well known to those of skill in the art.
[0268] In a preferred embodiment, the hybridomas are rat hybridomas. In another embodiment, the hybridomas are made in a non-human, non-rat species, such as mouse, sheep, pig, goat, cow or horse. In yet another preferred embodiment, the hybridomas are human hybridomas, in which a human non-secretory myeloma has been fused with a human cell expressing an anti-GFAP antibody.
[0269] Antibody fragments that recognize specific epitopes can be produced by known techniques. For example, the Fab and F(ab')2 fragments of the present disclosure can be produced by proteolytic cleavage of immunoglobulin molecules using enzymes such as papain (resulting in two identical Fab fragments) or pepsin (resulting in an F(ab')2 fragment). The F(ab')2 fragment of an IgG molecule retains the two antigen-binding sites of the larger ("parent") IgG molecule, including both light chains (containing the light chain variable region and the light chain constant region), the CH1 domain of the heavy chain, and the disulfide-forming hinge region of the parent IgG molecule. Thus, the F(ab')2 fragment is still capable of cross-linking antigen molecules, just like the parent IgG molecule.
[0270] (2) Anti-GFAP monoclonal antibody using SLAM In another embodiment of the present disclosure, recombinant antibodies are produced from single isolated lymphocytes using a procedure referred to in the art as the selected lymphocyte antibody method (SLAM), as described in U.S. Patent No. 5,627,052; PCT Publication No. 92 / 02551 and Babcook et al., Proc. Natl. Acad. Sci. USA, 93:7843-7848 (1996). In this method, single cells secreting the antibody of interest, e.g., lymphocytes from any one of the immunized animals, are screened using an antigen-specific hemolytic plaque assay in which the antigen, GFAP, a subunit of GFAP or a fragment thereof, is coupled to sheep red blood cells using a linker such as biotin and used to identify single cells secreting antibodies with specificity for GFAP. After identifying the antibody-secreting cells of interest, cDNAs for the heavy and light chain variable regions are rescued from the cells by reverse transcriptase PCR (RT-PCR), and these variable regions can then be expressed in the context of appropriate immunoglobulin constant regions (e.g., human constant regions) in mammalian host cells, such as COS or CHO cells. Host cells transfected with the amplified immunoglobulin sequences derived from in vivo selected lymphocytes can then be subjected to further analysis and selection in vitro, for example, by panning the transfected cells to isolate cells expressing antibodies against GFAP. The amplified immunoglobulin sequences can be further manipulated in vitro, such as by in vitro affinity maturation methods. See, e.g., PCT Publication Nos. 97 / 29131 and 00 / 56772.
[0271] (3) Anti-GFAP monoclonal antibody using transgenic animals In another embodiment of the disclosure, the antibodies are produced by immunizing a non-human animal that contains a portion or all of the human immunoglobulin loci with the GFAP antigen. In one embodiment, the non-human animal is a XENOMOUSE® transgenic mouse, an engineered mouse strain that contains large fragments of the human immunoglobulin loci and is deficient in the production of mouse antibodies. See, e.g., Green et al., Nature Genetics, 7:13-21 (1994), and U.S. Patent Nos. 5,916,771; 5,939,598; 5,985,615; 5,998,209; 6,075,181; 6,091,001; 6,114,598, and 6,130,364. See also PCT Publication Nos. 91 / 10741; PCT Publication No. 94 / 02602; PCT Publication No. 96 / 34096; PCT Publication No. 96 / 33735; PCT Publication No. 98 / 16654; PCT Publication No. 98 / 24893; PCT Publication No. 98 / 50433; PCT Publication No. 99 / 45031; PCT Publication No. 99 / 53049; PCT Publication No. 00 / 09560, and PCT Publication No. 00 / 37504. XENOMOUSE® transgenic mice produce an adult-like human repertoire of fully human antibodies and develop antigen-specific human monoclonal antibodies. The XENOMOUSE® transgenic mice contain approximately 80% of the human antibody repertoire by introducing megabase-sized, germline-configured YAC fragments of human heavy-chain and x-light-chain loci. See Mendez et al., Nature Genetics, 15:146-156 (1997); Green and Jakobovits, J. Exp. Med., 188:483-495 (1998), the disclosures of which are incorporated herein by reference.
[0272] (4) Anti-GFAP monoclonal antibody using a recombinant antibody library In vitro methods can also be used to generate the antibodies of the present disclosure, where antibody libraries are screened to identify antibodies with the desired GFAP binding specificity. Methods for such screening of recombinant antibody libraries are well known in the art, and are described, for example, in U.S. Patent No. 5,223,409 (Ladner et al.); PCT Publication No. 92 / 18619 (Kang et al.); PCT Publication No. 91 / 17271 (Dower et al.); PCT Publication No. 92 / 20791 (Winter et al.); PCT Publication No. 92 / 15679 (Markland et al.); PCT Publication No. 93 / 01288 (Breitling et al.); PCT Publication No. 92 / 01047 (McCafferty et al.); PCT Publication No. 92 / 09690 (Garrard et al.); Fuchs et al., Bio / Technology, 9:1369-1372 (1991); Hay et al., Hum. Antibod. H. ybrodomas, 3:81-85 (1992); Huse et al., Science, 246:1275-1281 (1989); McCafferty et al., Nature, 348:552-554 (1990); Griffiths et al., EMBOJ., 12:725-734 (1993); Hawkins et al., J. Mol. Biol., 226:889-896 (1992); Clackson et al., Nature, 352:624-628 (1991); Gram et al., Proc. Natl. Acad. Sci. USA, 89:3576-3580 (1992); Garrard et al., Bio / Technology, 9:1373-1377 (1991); Hoogenboom et al., Nucl. Acids Res., 19:4133-4137 (1991); Barbas et al., Proc. Natl. Acad. Sci. USA, 88:7978-7982 (1991); U.S. Patent Application Publication No. 2003 / 0186374 and PCT Publication No. 97 / 29131, the contents of each of which are incorporated herein by reference.
[0273] The recombinant antibody library may be derived from a subject immunized with GFAP or a portion of GFAP. Alternatively, the recombinant antibody library may be derived from a naive subject, i.e., a subject not immunized with GFAP, such as a human antibody library derived from a human subject not immunized with human GFAP. The antibodies of the present disclosure are selected by screening the recombinant antibody library with peptides comprising GFAP, thereby selecting antibodies that recognize GFAP. Methods for such screening and selection are well known in the art, such as those described in the references in the preceding paragraph. The antibodies of the present disclosure having a specific binding affinity for GFAP, and which are isolated from human GFAP by a specific K off Surface plasmon resonance techniques known in the art can be used to select antibodies, such as antibodies that dissociate with a desired K off Antibodies with a specific IC 50 To select antibodies of the disclosure having specific neutralizing activity against GFAP, such as an antibody having the following formula:
[0274] In one embodiment, the disclosure relates to an isolated antibody or antigen-binding portion thereof that binds to human GFAP. Preferably, the antibody is a neutralizing antibody. In various embodiments, the antibody is a recombinant antibody or a monoclonal antibody.
[0275] For example, antibodies may be generated using various phage display methods known in the art. In phage display methods, functional antibody domains are displayed on the surface of phage particles that carry the polynucleotide sequences encoding them. Such phage can be utilized to display antigen-binding domains expressed from a repertoire or combinatorial antibody library (e.g., human or murine). Phage expressing an antigen-binding domain that binds to the antigen of interest can be antigen-selected or identified, for example, using labeled antigen or antigen bound or captured to a solid surface or bead. Phage used in these methods are typically filamentous phage that contain fd and M13 binding domains expressed from the phage, and Fab, Fv, or disulfide-stabilized Fv antibody domains are recombinantly fused to either the phage gene III or gene VIII protein. Examples of phage display methods which can be used to generate antibodies are described in Brinkmann et al., J. Immunol. Methods, 182:41-50 (1995); Ames et al., J. Immunol. Methods, 184:177-186 (1995); Kettleborough et al., Eur. J. Immunol., 24:952-958 (1994); Persic et al., Gene, 187:9-18 (1997); Burton et al., Advances in Immunology, 57:191-280 (1994); PCT Publication No. WO92 / 01047; PCT Publication No. WO90 / 02809; WO91 / 10737; WO92 / 01047; WO92 / 18619; WO93 / 11236; WO95 / 15982; WO95 / 20401; and U.S. Patent Nos. 5,698,426; 5,223,409; This includes the methods disclosed in US Pat. Nos. 403,484; 5,580,717; 5,427,908; 5,750,753; 5,821,047; 5,571,698; 5,427,908; 5,516,637; 5,780,225; 5,658,727; 5,733,743; and 5,969,108.
[0276] After phage selection, as described in the above references, antibody coding regions from the phage are isolated and used to generate whole antibodies, including human antibodies or any other desired antigen-binding fragments, which may be expressed in any desired host, including mammalian cells, insect cells, plant cells, yeast, and bacteria, as described in detail below. For example, techniques for recombinantly producing Fab, Fab', and F(ab')2 fragments may be used using methods known in the art, such as those disclosed in PCT Publication No. WO 92 / 22324; Mullinax et al., BioTechniques, 12(6):864-869 (1992); Sawai et al., Am. J. Reprod. Immunol., 34:26-34 (1995); and Better et al., Science, 240:1041-1043 (1988). Examples of techniques that can be used for the production of single chain Fvs and antibodies include those described in U.S. Pat. Nos. 4,946,778 and 5,258,498; Huston et al., Methods in Enzymology, 203:46-88 (1991); Shu et al., Proc. Natl. Acad. Sci. USA, 90:7995-7999 (1993); and Skerra et al., Science, 240:1038-1041 (1988).
[0277] Other methods known in the art for screening large combinatorial libraries, which are alternatives to screening recombinant antibody libraries by phage display, can also be applied to identify the antibodies of the present disclosure. One type of alternative expression system is the expression system in which recombinant antibody libraries are expressed as RNA-protein fusions, as described in PCT Publication No. 98 / 31700 (Szostak and Roberts) and Roberts and Szostak, Proc. Natl. Acad. Sci. USA, 94:12297-12302 (1997). In this system, a covalent fusion is created between the mRNA and the peptide or protein it encodes, by in vitro translation of a synthetic mRNA that carries the peptidyl acceptor antibiotic puromycin at its 3' end. Thus, specific mRNAs can be enriched from a complex mixture of mRNAs (e.g., combinatorial libraries) based on the properties of the encoded peptides or proteins, e.g., antibodies or portions thereof, such as the binding of the antibodies or portions thereof to bispecific antigens. Nucleic acid sequences encoding antibodies or portions thereof recovered from screening of such libraries can be expressed by recombinant means as described above (e.g., in mammalian host cells) and subjected to further affinity maturation by further rounds of screening of mRNA-peptide fusions in which mutations are introduced into the originally selected sequences, or by other methods for affinity maturation of recombinant antibodies in vitro, as described above. A preferred example of this methodology is the PROfusion display technology.
[0278] In another approach, antibodies may be generated using yeast display methods known in the art. In yeast display methods, genetic methods are used to tether antibody domains to the yeast cell wall and display them on the surface of the yeast. In particular, such yeast may be utilized to display antigen-binding domains expressed from a repertoire or combinatorial antibody library (e.g., human or mouse). Examples of yeast display methods that may be used to generate antibodies include those disclosed in U.S. Patent No. 6,699,658 (Wittrup et al.), which is incorporated herein by reference.
[0279] d. Production of recombinant GFAP antibodies Antibodies may be produced by any of a number of techniques known in the art, such as expression from a host cell in which expression vectors encoding the heavy and light chains have been transfected into the host cell by standard techniques. The various forms of the term "transfection" are intended to encompass a wide variety of techniques commonly used for the introduction of exogenous DNA into prokaryotic or eukaryotic host cells, such as electroporation, calcium phosphate precipitation, DEAE-dextran transfection, and the like. Although it is possible to express the antibodies of the present disclosure in prokaryotic or eukaryotic host cells, expression of the antibodies in eukaryotic cells, and most preferably in mammalian host cells, is preferred, since such eukaryotic cells (and particularly mammalian cells) are more likely than prokaryotic cells to assemble, properly fold, and secrete immunologically active antibodies.
[0280] Exemplary mammalian host cells for expressing recombinant antibodies of the disclosure include Chinese hamster ovary (CHO cells) used with a DHFR selectable marker as described, for example, in Kaufman and Sharp, J. Mol. Biol., 159:601-621 (1982) (including dhfr-CHO cells, described in Urlaub and Chasin, Proc. Natl. Acad. Sci. USA, 77:4216-4220 (1980)), NS0 myeloma cells, COS cells, and SP2 cells. When a recombinant expression vector encoding an antibody gene is introduced into a mammalian host cell, the antibody is produced by culturing the host cell for a sufficient time to allow for expression of the antibody within the host cell or, more preferably, secretion of the antibody into the culture medium in which the host cell is grown. The antibody can be recovered from the culture medium using standard protein purification methods.
[0281] The host cells can also be used to generate functional antibody fragments, such as Fab fragments or scFv molecules. It is understood that variations on the above procedures can be performed. For example, it may be desirable to transfect the host cells with DNA encoding functional fragments of the light and / or heavy chains of the antibodies of the present disclosure. Recombinant DNA technology can also be used to remove some or all of the DNA encoding either or both of the light and heavy chains that is not necessary for binding to the antigen of interest. Molecules expressed from such truncated DNA molecules are also encompassed by the antibodies of the present disclosure. In addition, bifunctional antibodies in which one heavy and one light chain is an antibody of the present disclosure (i.e., binds human GFAP) and the other heavy and light chains are specific for an antigen other than human GFAP can be generated by crosslinking the antibody of the present disclosure to a second antibody via standard chemical crosslinking methods.
[0282] In a preferred system for recombinantly expressing an antibody of the present disclosure or an antigen-binding portion thereof, a recombinant expression vector encoding both the antibody heavy chain and the antibody light chain is introduced into dhfr-CHO cells by calcium phosphate-mediated transfection. Within the recombinant expression vector, each of the antibody heavy chain gene and the antibody light chain gene is operably linked to a CMV enhancer / AdMLP promoter regulatory element to drive high levels of gene transcription. The recombinant expression vector also carries a DHFR gene to allow for selection of CHO cells transfected with the vector using methotrexate selection / amplification. The host cells of the selected transformants are cultured to allow expression of the antibody heavy and light chains and for intact antibody to be recovered from the culture medium. Standard molecular biology techniques are used to prepare the recombinant expression vector, transfect the host cells, select for transformants, culture the host cells, and recover the antibody from the culture medium. Still further, the present invention provides a method of synthesizing a recombinant antibody of the present disclosure by culturing the host cells of the present disclosure in an appropriate culture medium until the recombinant antibody of the present disclosure is synthesized. The method may further comprise the step of isolating the recombinant antibody from the culture medium.
[0283] (1) Humanized antibodies A humanized antibody may be an antibody, or a variant, derivative, analog or portion thereof, that immunospecifically binds to an antigen of interest and comprises a framework (FR) region having substantially the amino acid sequence of a human antibody and a complementarity determining region (CDR) having substantially the amino acid sequence of a non-human antibody. A humanized antibody may be derived from a non-human species antibody that binds to a desired antigen and has one or more complementarity determining regions (CDRs) from the non-human species and a framework region from a human immunoglobulin molecule.
[0284] As used herein, the term "substantially" in the context of a CDR refers to a CDR having an amino acid sequence that is at least 90%, at least 95%, at least 98% or at least 99% identical to the amino acid sequence of a non-human antibody CDR. A humanized antibody comprises substantially all of at least one, but typically two, variable domains (Fab, Fab', F(ab')2, FabC, Fv) in which all or substantially all of the CDR regions correspond to the CDR regions of a non-human immunoglobulin (i.e., donor antibody) and all or substantially all of the framework regions are framework regions of a human immunoglobulin consensus sequence. According to one embodiment, the humanized antibody also comprises at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin. In some embodiments, the humanized antibody contains both a light chain and at least the variable domain of a heavy chain. The antibody may also include the CH1, hinge, CH2, CH3 and CH4 regions of the heavy chain. In some embodiments, the humanized antibody contains only a humanized light chain. In some embodiments, a humanized antibody contains only a humanized heavy chain. In specific embodiments, a humanized antibody contains only humanized variable domains of the light and / or heavy chain.
[0285] The humanized antibody may be selected from any class of immunoglobulins, including IgM, IgG, IgD, IgA, and IgE, and any isotype, including but not limited to IgG1, IgG2, IgG3, and IgG4. The humanized antibody may comprise sequences from more than one class or isotype, and particular constant domains may be selected to optimize desired effector functions, using techniques well known in the art.
[0286] The framework and CDR regions of a humanized antibody need not correspond exactly to the parental sequences, for example, the donor antibody CDR or consensus framework may be mutagenized by substitution, insertion and / or deletion of at least one amino acid residue such that the CDR or framework residue at this site does not correspond to the donor antibody or consensus framework. However, in one embodiment, such mutations are not extensive mutations. Typically, at least 90%, at least 95%, at least 98% or at least 99% of the humanized antibody residues correspond to the residues of the parental FR and CDR sequences. As used herein, the term "consensus framework" refers to a framework region in a consensus immunoglobulin sequence. As used herein, the term "consensus immunoglobulin sequence" refers to a sequence formed from the most frequently occurring amino acids (or nucleotides) in a family of related immunoglobulin sequences (see, for example, Winnaker, "From Genes to Clones" (Verlagsgesellschaft, Weinheim, Germany, 1987)). In a family of immunoglobulins, each position in the consensus sequence is occupied by the amino acid that occurs most frequently at that position in the family. If two amino acids occur equally frequently, either can be included in the consensus sequence.
[0287] Humanized antibodies can be designed to minimize undesired immunological responses to anti-human rodent antibodies that limit the duration and effectiveness of therapeutic applications of these moieties in human recipients. Humanized antibodies can have one or more amino acid residues introduced into them from a source that is non-human. These non-human residues are often referred to as "import" residues, typically taken from the variable domain. Humanization can be performed by substituting hypervariable region sequences with the corresponding sequences of a human antibody. Such "humanized" antibodies are thus chimeric antibodies in which substantially less than intact human variable domains are substituted by the corresponding sequences from a non-human species. See, e.g., U.S. Pat. No. 4,816,567, the contents of which are incorporated herein by reference. Humanized antibodies can be human antibodies in which some hypervariable region residues, and possibly some FR residues, are substituted by residues from analogous sites in rodent antibodies. Humanization or engineering of the antibodies of the present disclosure can be carried out using any known method, such as, but not limited to, those methods described in U.S. Pat. Nos. 5,723,323; 5,976,862; 5,824,514; 5,817,483; 5,814,476; 5,763,192; 5,723,323; 5,766,886; 5,714,352; 6,204,023; 6,180,370; 5,693,762; 5,530,101; 5,585,089; 5,225,539 and 4,816,567.
[0288] The humanized antibody may retain high affinity for GFAP and other favorable biological properties. The humanized antibody may be prepared by analyzing the parental sequences and various conceptual humanized products using three-dimensional models for the parental and humanized sequences. Three-dimensional immunoglobulin models are generally available. Computer programs are available which illustrate and display possible three-dimensional conformational structures of selected candidate immunoglobulin sequences. Inspection of these displays allows analysis of the likely role of the residues in the functioning of the candidate immunoglobulin sequence, i.e., analysis of residues that affect the ability of the candidate immunoglobulin to bind to its antigen. In this way, FR residues can be selected and combined from the recipient and import sequences so that the desired antibody characteristic, such as increased affinity for GFAP, is achieved. In general, the hypervariable region residues may be directly and most substantially involved in influencing antigen binding.
[0289] As an alternative to humanization, human antibodies (also referred to herein as "fully human antibodies") can be produced. For example, human antibodies can be isolated from libraries via PROfusion and / or yeast-related technologies. It is also possible to produce transgenic animals (e.g., mice that are capable, upon immunization, of producing a full repertoire of human antibodies in the absence of endogenous immunoglobulin production). For example, the expression of the antibody heavy chain joining region (JC) in chimeric and germline mutant mice can be expressed in a variety of ways. HHomozygous deletion of the .ALPHA.-Asp.I.) gene results in complete inhibition of endogenous antibody production. Transfer of the human germline immunoglobulin gene array into such germline mutant mice results in the production of human antibodies upon antigen challenge. Humanized or fully human antibodies can be prepared according to the methods described in U.S. Patent Nos. 5,770,429; 5,833,985; 5,837,243; 5,922,845; 6,017,517; 6,096,311; 6,111,166; 6,270,765; 6,303,755; 6,365,116; 6,410,690; 6,682,928 and 6,984,720. The contents of each of the above patents are incorporated herein by reference.
[0290] e. Anti-GFAP antibody Anti-GFAP antibodies may be made using the techniques described above as well as using routine techniques known in the art. In some embodiments, the anti-GFAP antibody is from Dako (product no. M0761), ThermoFisher Scientific (product no. MA5-12023, A-21282, 13-0300, MA1-19170, MA1-19395, MA5-15086, MA5-16367, MA1-35377, MA1-06701, or MA1-20035), AbCam (product no. ab10062, ab4648, ab68428, ab33922, ab207165, ab190288, ab115898, or ab21837), EMD Millipore (product no. FCMAB257P, MAB360, MAB3402, 04-1031, 04-1062, MAB5628), Santa The antibody may be an unconjugated GFAP antibody, such as a GFAP antibody commercially available from Cruz (Model No.: sc-166481, sc-166458, sc-58766, sc-56395, sc-51908, sc-135921, sc-71143, sc-65343 or sc-33673), Sigma-Aldrich (Model No.: G3893 or G6171) or Sino Biological Inc. (Model No.: 100140-R012-50). The anti-GFAP antibody may be conjugated to a fluorophore, such as conjugated GFAP antibodies commercially available from ThermoFisher Scientific (cat. no.: A-21295 or A-21294), EMD Millipore (cat. no.: MAB3402X, MAB3402B, MAB3402B or MAB3402C3) or AbCam (cat. no.: ab49874 or ab194325).
[0291] Alternatively, antibodies described in WO2018 / 067474, WO2018 / 081649, U.S. Patent No. 11,078,298, U.S. Patent Application Publication No. 2019 / 0502127, and / or Bazarian et al., "Accuracy of a rapid GFAP / UCH-L1 test for the prediction of intracranial injuries on head CT after mild traumatic brain injury," Acad. Emerg. Med. (August 6, 2021), the contents of which are incorporated by reference herein, may be used.
[0292] 7. Other Factors As described above, the method of diagnosis, prognosis and / or evaluation can further include using other factors for diagnosis, prognosis and evaluation. In some embodiments, traumatic brain injury can be diagnosed using the Glasgow Coma Scale or the Glasgow Outcome Scale Extended (GOSE). Other tests, scales or indices can also be used alone or in combination with the Glasgow Coma Scale (GCS). An example is the Ranchos Los Amigos Scale (RLAS). The Ranchos Los Amigos Scale (RLAS) measures the level of consciousness, cognition, behavior and interaction with the environment. The Ranchos Los Amigos Scale (RLAS) includes the following scales: Level I: no response; Level II: general response; Level III: local response; Level IV: confusion (agitation); Level V: confusion (inappropriate); Level VI: confusion (appropriate); Level VII: automatic (appropriate) and Level VIII: purposeful (appropriate). Another example is the Rivermead Post-Concussion Symptom Questionnaire, a self-report scale for measuring the severity of post-concussion symptoms following a TBI. Patients are asked to rate how severe each of 16 symptoms (e.g., headache, dizziness, nausea, vomiting) has become over the last 24 hours. In each case, the symptoms are compared to how severe the symptoms were before the injury occurred (pre-onset). These symptoms are reported according to severity on a scale of 0 to 4: not experienced, no problems at all, mild problems, moderate problems, and severe problems.
[0293] 8. Sample In some embodiments, the sample is obtained from a subject (e.g., a human subject) who has suffered or is suspected of suffering a head injury that may have been or may have been caused by any one or combination of factors. In some embodiments, the sample is obtained after the subject has suffered a head injury caused by physical shaking, blunt impact from an external mechanical or other force resulting in a closed or open head injury, one or more drops, explosions or blasts, or other types of blunt force trauma. In some embodiments, the sample is obtained after the subject has ingested or been exposed to fire, chemicals, or toxins, or a combination of fire, chemicals, and / or toxins. Examples of such chemicals and / or toxins include mold, asbestos, pesticides and insecticides, organic solvents, paints, glues, gases (such as carbon monoxide, hydrogen sulfide, and cyanides), organometallics (such as methylmercury, tetraethyl lead, and organotins), and / or one or more drugs of abuse. In some embodiments, the sample is obtained from a subject suffering from an autoimmune disease, a metabolic disorder, a brain tumor, hypoxia, a viral infection (SARS-CoV-2), a fungal infection, a bacterial infection, meningitis, hydrocephalus, or any combination thereof.
[0294] In yet another embodiment, the methods described herein use a sample that may be used to determine whether a subject has or is at risk for developing a TBI (such as mild TBI, moderate TBI, severe TBI, or moderate-severe TBI) by determining the level of UCH-L1 and / or GFAP in the subject using anti-UCH-L1 and / or anti-GFAP antibodies or antibody fragments thereof described below. Thus, in certain embodiments, the present disclosure also provides methods for determining whether a subject having or at risk for a traumatic brain injury, as described herein and known in the art, is a candidate for a therapy or treatment. Generally, a subject will at least (i) have experienced a head injury; (ii) have ingested and / or been exposed to one or more chemicals and / or toxins; (iii) suffer from an autoimmune disease, metabolic disorder, brain tumor, hypoxia, a viral infection (e.g., SARS-CoV-2), a fungal infection, a bacterial infection, meningitis, hydrocephalus, or any combination thereof; or (iv) be any combination of (i)-(iii); or have actually been diagnosed with or at risk for a TBI (such as, for example, a subject suffering from an autoimmune disease, metabolic disorder, brain tumor, hypoxia, a viral infection (e.g., SARS-CoV-2), a fungal infection, a bacterial infection, meningitis, hydrocephalus, or any combination thereof), and / or demonstrate an untoward (i.e., clinically undesirable) concentration or amount of UCH-L1 and / or GFAP or UCH-L1 and / or GFAP fragments as described herein.
[0295] A. Tests or Biological Samples As used herein, "sample", "test sample", "biological sample" refers to a bodily fluid sample that contains or is suspected to contain GFAP and / or UCH-L1. The sample may be from any suitable source. In some cases, the sample may include a liquid, a flowable particulate solid, or a fluid suspension of solid particles. In some cases, the sample may be processed prior to the analysis described herein. For example, the sample may be separated or purified from its source prior to analysis; however, in certain embodiments, an unprocessed sample containing GFAP and / or UCH-L1 may be assayed directly. In certain examples, the source containing GFAP and / or UCH-L1 is human (e.g., pediatric or adult human) material or material from another species. As used herein, the term "pediatric" or "pediatric subject" refers to a subject under 18 years of age (i.e., not 18 years of age or older). For example, a pediatric subject can be less than about 18 years old, or about 17 years old, about 16 years old, about 15 years old, about 14 years old, about 13 years old, about 12 years old, about 11 years old, about 10 years old, about 9 years old, about 8 years old, about 7 years old, about 6 years old, about 5 years old, about 4 years old, about 3 years old, about 2 years old, about 1 year old, or less than about 1 year old. In some embodiments, a pediatric subject can be less than about 1 year old to less than about 18 years old. In some embodiments, a pediatric subject can be less than about 1 year old to about 17 years old. For example, a pediatric subject can be any of the following in total: about 1 day, about 2 days, about 3 days, about 4 days, about 5 days, about 6 days, about 1 week, about 2 weeks, about 3 weeks, about 1 month, about 2 months, about 3 months, about 4 months, about 5 months, about 6 months, about 7 months, about 8 months, about 9 months, about 10 months, or about 11 months: less than about 18 years of age, or about 17 years of age, or about 16 years of age, or about 15 years of age, or about 14 years of age, or about 13 years of age, or about 12 years of age, or about 11 years of age, or about 10 years of age, or about 9 years of age, or about 8 years of age, or about 7 years of age, or about 6 years of age, or about 5 years of age, or about 4 years of age, or about 3 years of age, or about 2 years of age, or about 1 year of age, or less than about 1 year of age. "Adult" or "adult subject" refers to a subject who is 18 years of age or older.
[0296] The substance is optionally a bodily substance (e.g., bodily fluid, blood, e.g., whole blood, serum, plasma, urine, saliva, sweat, sputum, semen, mucus, tears, lymph, amniotic fluid, interstitial fluid, lung lavage, cerebrospinal fluid, feces, tissue, organ or other). Tissues can include, but are not limited to, skeletal muscle tissue, liver tissue, lung tissue, kidney tissue, myocardial tissue, brain tissue, bone marrow, cervical tissue, skin, and the like. The sample can be a liquid sample, or a liquid extract of a solid sample. In certain cases, the source of the sample can be an organ or tissue, such as a biopsy sample, which can be solubilized by tissue disintegration / cell lysis. In some embodiments, the sample is a whole blood sample, a serum sample, a cerebrospinal fluid sample, a mixed venous and capillary blood sample, a mixed capillary blood and interstitial fluid sample, a tissue sample, a bodily fluid, or a plasma sample.
[0297] A wide range of volumes of bodily fluid samples can be analyzed. In some exemplary embodiments, the sample volume can be about 0.5 nL, about 1 nL, about 3 nL, about 0.01 μL, about 0.1 μL, about 1 μL, about 5 μL, about 10 μL, about 100 μL, about 1 mL, about 5 mL, about 10 mL, or others. In some cases, the volume of the bodily fluid sample is between about 0.01 μL and about 10 mL, between about 0.01 μL and about 1 mL, between about 0.01 μL and about 100 μL, or between about 0.1 μL and about 10 μL.
[0298] In some cases, the body fluid sample may be diluted before use in the assay. For example, in embodiments where the source containing GFAP and / or UCH-L1 is a human biological fluid (e.g., blood, serum), the body fluid may be diluted with a suitable solvent (e.g., a buffer, e.g., a PBS buffer). The body fluid sample may be diluted about 1-fold, about 2-fold, about 3-fold, about 4-fold, about 5-fold, about 6-fold, about 10-fold, about 100-fold or more before use. In other cases, the body fluid sample is not diluted before use in the assay.
[0299] In some cases, the sample may undergo pre-analysis. Pre-analysis may provide additional functionality such as non-specific protein removal and / or effective but inexpensively feasible mixing functionality. Common methods of pre-analysis may include the use of electrokinetic trapping, AC electrokinetics, surface acoustic waves, isotachophoresis, dielectrophoresis, electrophoresis, or other pre-concentration techniques known in the art. In some cases, the body fluid sample may be concentrated before use in the assay. For example, in embodiments where the source containing GFAP and / or UCH-L1 is a biological fluid (e.g., blood, serum) from a subject (e.g., human or other species), the body fluid may be concentrated by precipitation, evaporation, filtration, centrifugation, or a combination thereof. The body fluid sample may be concentrated about 1-fold, about 2-fold, about 3-fold, about 4-fold, about 5-fold, about 6-fold, about 10-fold, about 100-fold, or more, before use.
[0300] 9. Kit Provided herein are kits that can be used to assay or evaluate test samples for UCH-L1 and / or GFAP or UCH-L1 and / or GFAP fragments. The kits include at least one lateral flow device for assaying test samples for UCH-L1 and / or GFAP. In some embodiments, the kits include multiple (e.g., two) lateral flow devices individually wrapped and packaged together in a moisture-impermeable envelope. In addition to at least one lateral flow device, the kits can also contain instructions for assaying test samples for UCH-L1 and / or GFAP. For example, the kits can include instructions for assaying test samples for UCH-L1 and / or GFAP using the lateral flow devices described herein. The instructions included in the kits can be affixed to the packaging material or included as a package insert. The instructions are typically written or printed materials, but are not limited to such. For example, in some embodiments, a bar code (e.g., a QR code) may be provided on the lateral flow device, packing material, or insert that can be scanned by a mobile device (e.g., phone, iPad, watch) to view the instructions. Indeed, any medium capable of storing such instructions and communicating them to an end user is contemplated by this disclosure. Such media include, but are not limited to, electronic storage media (e.g., magnetic disks, tapes, cartridges, chips), optical media (e.g., CD ROM), and the like. As used herein, "instructions" may include the address of an internet site that provides the instructions.
[0301] Alternatively or additionally, the kit may include a calibrator or control, e.g., purified, optionally lyophilized UCH-L1 and / or GFAP, and / or at least one container for performing the assay (e.g., a tube, microtiter plate or strip that may already be coated with an anti-UCH-L1 and / or GFAP monoclonal antibody), and / or a buffer, e.g., an assay buffer or a wash buffer (any one of which may be provided as a concentrated solution), a substrate solution for a detectable label (e.g., an enzyme label), or a stop solution. Preferably, the kit includes all components necessary to perform the assay, i.e., a lateral flow device, reagents, standards, buffers, diluents, etc.
[0302] The kit may also optionally include other reagents required to perform the assay, such as buffers, salts, enzymes, enzyme cofactors, substrates, detection reagents, etc. Other components may also be included in the kit, such as buffers and solutions for isolating and / or treating the test sample (e.g., pretreatment reagents). In addition, the kit may also include one or more other controls. One or more of the components of the kit may be lyophilized, in which case the kit may further include reagents suitable for reconstituting the lyophilized components.
[0303] The various components of the kit are optionally provided in suitable containers as needed. The kit may further include a container for holding or storing a sample (e.g., a container or cartridge for a urine sample, a whole blood sample, a plasma sample, or a serum sample). If appropriate, the kit may also optionally contain a mixing vessel and reagents or other components to facilitate preparation of the test sample. The kit may also include one or more instruments to aid in obtaining a test sample, such as a syringe, a pipette, forceps, measuring spoon, etc.
[0304] If desired, the kit can further include one or more components, either alone or in further combination with instructions for assaying the test sample for another analyte, which can be a biomarker. EXAMPLES
[0305] It will be readily apparent to one skilled in the art that other suitable modifications and adaptations of the disclosed methods described herein are readily applicable and recognizable, and may be made using appropriate equivalents without departing from the scope of the disclosure or the embodiments disclosed herein. Now, the disclosure has been described in detail, which may be more clearly understood by reference to the following examples, which are intended only to illustrate certain embodiments of the disclosure, and should not be considered as limiting to the scope of the disclosure. The disclosures of all journal references, U.S. patents, and publications mentioned herein are incorporated herein by reference in their entirety.
[0306] The present disclosure has multiple embodiments, illustrated by the non-limiting examples set forth below.
[0307] [Example 1] GFAP lateral flow assay An exemplary lateral flow assay for detecting GFAP is provided, using a sandwich-type assay.In particular, the lateral flow device comprises a first zone (e.g., reagent zone) that is specific to a first epitope in GFAP and comprises a Fab monoclonal antibody that is labeled with a detectable label, e.g., colloidal metal, e.g., colloidal gold.The device comprises an immobilized monoclonal antibody that is specific to a second, different epitope of GFAP in a second zone (e.g., detection zone).A positive test result that indicates the presence of GFAP is indicated by the appearance of a visible line in the detection zone (e.g., test line).
[0308] A monoclonal antibody pair was used, for example, antibody A as the capture monoclonal antibody and antibody B as the detection monoclonal antibody. Antibody A and antibody B are exemplary anti-GFAP antibodies developed in-house at Abbott Laboratories (Abbott Park, IL). Antibody A and antibody B bind to epitopes within the same GFAP degradation product. Other commercially available antibodies, for example, antibodies previously described herein, may be used together as capture or detection antibodies in various combinations in such lateral flow devices. Optionally, any form, combination, and / or number of antibodies may be used. For example, all antibodies used may be monoclonal antibodies, all antibodies used may be Fabs, or alternatively, there may be a mixture of monoclonal antibodies and Fabs. Two antibodies may be used, three antibodies may be used, four antibodies may be used, and so on.
[0309] Recombinant GFAP was spiked into the buffer solution (~40 pg / mL to ~1000 pg / mL) to obtain a sample volume of 80 μL. A portion of the sample was applied to the first zone of the exemplary lateral flow device. A positive test result indicating the presence of GFAP was indicated within 15 minutes by the appearance of a visible line in the detection zone. The visual detection limit was determined to be approximately 125 pg / mL. This visual detection limit corresponds to an internally assigned immunochromatographic (ICT) score of 0.5.
[0310] The ICT score is simply used to aid in standardization of results across experiments and understanding of the sensitivity limits of the test, which may allow for darker lines and a higher incidence of positive readings. Essentially, an ICT scorecard was developed that corresponds to a gradient of values to assign scores, where the lightness or darkness of the visible line that may be observed in the detection zone is indicated by graduated values of pink or another color, and the assigned number increases with increasing darkness of the value or saturation / intensity of the color. In general, it is understood that for an ICT score=0.5, an inexperienced operator (i.e., an operator with no experience in screening for visible lines) can read between 70-80% of the developed lines. The same inexperienced operator who cannot see an ICT score of 0.5 can typically see higher intensity lines at an ICT score of 0.5 or 1. An inexperienced operator can see 10-20% of the developed lines at an ICT score=0.25. In contrast, 100% of "experienced" operators (i.e., operators experienced in screening visible lines, e.g., internal R&D and QC operators) are able to see developed lines at ICT=0.5 or less.
[0311] In addition, the signal provided by recombinant GFAP spiked into buffer at between approximately 40 pg / mL and approximately 1000 pg / mL was found to be linear across the dilutions examined with ICT scores between 0.25 and 2.5 (including the zero control).
[0312] [Example 2] UCH-L1 lateral flow assay An exemplary lateral flow assay for detecting UCH-L1 is provided, using a sandwich-type assay. In particular, the lateral flow device comprises a first zone (e.g., a reagent zone) that contains a monoclonal antibody that is specific to a first epitope on UCH-L1 and is labeled with a detectable label. The device comprises an immobilized monoclonal antibody that is specific to a second, different epitope on UCH-L1 in a second zone (e.g., a detection zone). A positive test result indicating the presence of UCH-L1 is indicated by the appearance of a visible line in the detection zone (e.g., a test line).
[0313] A monoclonal antibody pair was used, for example, antibody A as a capture monoclonal antibody and antibody B as a detection monoclonal antibody. Antibody A is an exemplary anti-UCH-L1 antibody developed in-house at Abbott Laboratories (Abbott Park, IL). Antibody B recognizes a different epitope of UCH-L1 and was developed by Banyan Biomarkers (Alachua, Florida). Other antibodies developed in-house at Abbott Laboratories (Abbott Park, IL), or other commercially available antibodies, for example, those described herein, may be used together as capture or detection antibodies in various combinations in such lateral flow devices. Optionally, any form, combination, and / or number of antibodies may be used. For example, all antibodies used may be monoclonal antibodies, all antibodies used may be Fabs, or alternatively, there may be a mixture of monoclonal antibodies and Fabs. Two antibodies may be used, three antibodies may be used, four antibodies may be used, and so on.
[0314] Recombinant UCH-L1 was spiked into the buffer solution (about 400 pg / mL to about 20,000 pg / mL) to obtain a sample volume of 80 μL. A portion of the sample was applied to the first zone of the exemplary lateral flow device. A positive test result indicating the presence of UCH-L1 was indicated within 15 minutes by the appearance of a visible line in the detection zone. The visual detection limit (ICT score = 0.5) was determined to be approximately 1250 pg / mL. In addition, the signal provided by recombinant UCH-L1 spiked into the buffer between about 400 pg / mL to about 20,000 pg / mL was found to be linear with ICT scores between 0.25 and 2.5 (including the zero control).
[0315] It is understood that the foregoing detailed description and the accompanying examples are exemplary only and are not to be taken as limitations on the scope of the present disclosure, which is defined solely by the appended claims and their equivalents.
[0316] Various changes and modifications to the disclosed embodiments will be apparent to those skilled in the art. Such changes and modifications, including, without limitation, changes and modifications to the chemical structures, substituents, derivatives, intermediates, syntheses, compositions, formulations, or methods of use of the present disclosure, may be made without departing from the spirit and scope thereof.
[0317] For completeness reasons, various embodiments of the disclosure are presented in the following numbered clauses: For completeness reasons, various embodiments of the disclosure are presented in the following numbered clauses: Clause 1. performing at least one lateral flow assay in a biological sample obtained from the subject to determine the amount or presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) alone, or the amount or presence of UCH-L1 and the amount or presence of glial fibrillary acidic protein (GFAP); and Displaying the amount or presence of UCH-L1 alone or UCH-L1 and GFAP determined in the sample. The method includes: Clause 2. The method of clause 1, wherein at least one lateral flow assay is part of a lateral flow device. Clause 3. The method of clause 2, wherein the lateral flow device comprises: (a) at least one test strip; or (b) at least two test strips. Clause 4. The method of any of clauses 1 to 3, wherein (a) the lateral flow assay for UCH-L1 comprises a first specific binding partner that binds to an epitope in UCH-L1 and a second specific binding partner that comprises a detectable label; and (b) the lateral flow assay for GFAP comprises a third specific binding partner that binds to an epitope in GFAP and a fourth specific binding partner that comprises a detectable label. Clause 5. The method of clause 4, wherein the first specific binding partner, the second specific binding partner, the third specific binding partner, the fourth specific binding partner or any combination thereof is an antibody or an antibody fragment thereof. Clause 6. A method according to any one of clauses 1 to 5 for use in aiding in the diagnosis and assessment of a subject who has suffered or may have suffered a head injury. Clause 7. The method of clause 6, wherein the subject is diagnosed with a traumatic brain injury. Clause 8. The method of clause 7, wherein the subject is diagnosed with mild, moderate, severe or moderate-severe traumatic brain injury. Clause 9. The method of any of clauses 1 to 8, wherein the biological sample is a sample selected from the group consisting of a blood sample, a urine sample, a cerebrospinal fluid sample, a tissue sample, a body fluid sample, a saliva sample, an oropharyngeal specimen and a nasopharyngeal specimen. Clause 10. The method of any of clauses 1 to 9, used to determine whether a subject should undergo a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) scan, or both a head CT scan and an MRI scan. Clause 11. Performing at least one lateral flow assay on a biological sample obtained from the subject to determine the amount or presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1), glial fibrillary acidic protein (GFAP), or both UCH-L1 and GFAP; and Visualizing the amount or presence of the determined UCH-L1, GFAP, UCH-L1 and GFAP in the sample. wherein the assay does not require a device to read the amount or presence of UCH-L1, GFAP, or UCH-L1 and GFAP. Clause 12. The method of clause 11, wherein (a) the lateral flow assay for UCH-L1 comprises a first specific binding partner that binds to an epitope in UCH-L1 and a second specific binding partner that comprises a detectable label; and (b) the lateral flow assay for GFAP comprises a third specific binding partner that binds to an epitope in GFAP and a fourth specific binding partner that comprises a detectable label. Clause 13. The method of clause 12, wherein the first specific binding partner, the second specific binding partner, the third specific binding partner, the fourth specific binding partner or any combination thereof is an antibody or an antibody fragment thereof. Clause 14. A method according to any one of clauses 11 to 13 for use in aiding in the diagnosis and assessment of a subject who has suffered or may have suffered a head injury. Clause 15. The method of clause 14, wherein the subject is diagnosed with a traumatic brain injury. Clause 16. The method of clause 15, wherein the subject is diagnosed with mild, moderate, severe or moderate-severe traumatic brain injury. Clause 17. The method of any of clauses 11 to 16, wherein the biological sample is a sample selected from the group consisting of a blood sample, a urine sample, a cerebrospinal fluid sample, a tissue sample, a body fluid sample, a saliva sample, an oropharyngeal sample and a nasopharyngeal sample. Clause 18. The method of any of clauses 11 to 17, which is used to determine whether a subject should undergo a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) scan, or both a head CT scan and an MRI scan. Clause 19. The method of any of clauses 12-18, wherein the detectable label is a colloidal metal particle, a colloidal non-metallic particle, a latex particle, a colored or dyed particle, or any combination thereof. Clause 20. The method of clause 19, wherein the detectable label is a colloidal metal particle. Clause 21. The method of clause 19, wherein the colloidal metal particles are gold or silver colloidal particles. Clause 22. The method of any of clauses 12 to 21, wherein the detectable label is visible to the naked eye. Clause 23. A first lateral flow device for detecting the presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) in a sample; a second lateral flow device for detecting the presence of glial fibrillary acidic protein (GFAP) in the sample; and Instructions for detecting the presence of UCH-L1 and GFAP in a sample 12. A kit for carrying out the method according to clause 1 or 11 comprising Clause 24. A lateral flow device for detecting the presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) and glial fibrillary acidic protein (GFAP) in a sample; and Instructions for detecting the presence of UCH-L1 and GFAP in a sample 12. A kit for carrying out the method according to clause 1 or 11 comprising Clause 25. The kit according to clause 24, comprising at least one test strip. Clause 26. The kit according to clause 24, comprising at least two test strips. Clause 27. The method of any of clauses 1 to 22, wherein at least one lateral flow assay for GFAP, at least one lateral flow assay for UCH-L1, or at least one lateral flow assay for GFAP and at least one lateral flow assay for UCH-L1, is performed or can be performed in less than about 30 minutes, less than about 25 minutes, less than about 20 minutes, less than about 18 minutes or less than about 15 minutes, respectively. Clause 28. The method of any of clauses 1 to 22, wherein the at least one lateral flow assay for GFAP, the at least one lateral flow assay for UCH-L1, or the at least one lateral flow assay for GFAP and the at least one lateral flow assay for UCH-L1 are each performed or capable of being performed for a time ranging from about 4 to about 20 minutes, from about 10 to about 15 minutes, or from about 15 to about 18 minutes.
Claims
1. performing at least one lateral flow assay on a biological sample obtained from the subject to determine the amount or presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) alone, or the amount or presence of UCH-L1 and the amount or presence of glial fibrillary acidic protein (GFAP); and Displaying the amount or presence of UCH-L1 alone or UCH-L1 and GFAP determined in the sample. The method includes:
2. The method of claim 1 , wherein the at least one lateral flow assay is part of a lateral flow device.
3. 3. The method of claim 2, wherein the lateral flow device comprises: (a) at least one test strip; or (b) at least two test strips.
4. The method of any one of claims 1 to 3, wherein: (a) the lateral flow assay for UCH-L1 comprises a first specific binding partner that binds to an epitope in UCH-L1 and a second specific binding partner that comprises a detectable label; and (b) the lateral flow assay for GFAP comprises a third specific binding partner that binds to an epitope in GFAP and a fourth specific binding partner that comprises a detectable label.
5. 5. The method of claim 4, wherein the first specific binding partner, the second specific binding partner, the third specific binding partner, the fourth specific binding partner, or any combination thereof, is an antibody or an antibody fragment thereof.
6. 6. The method of any one of claims 1 to 5, used to aid in the diagnosis and assessment of a subject who has suffered or may have suffered a head injury.
7. 7. The method of claim 6, wherein the subject is diagnosed with a traumatic brain injury.
8. 8. The method of claim 7, wherein the subject is diagnosed as having mild, moderate, severe, or moderate to severe traumatic brain injury.
9. The method according to any one of claims 1 to 8, wherein the biological sample is a sample selected from the group consisting of a blood sample, a urine sample, a cerebrospinal fluid sample, a tissue sample, a body fluid sample, a saliva sample, an oropharyngeal specimen and a nasopharyngeal specimen.
10. The method of any one of claims 1 to 9, used to determine whether a subject should undergo a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) scan, or both a head CT scan and an MRI scan.
11. performing at least one lateral flow assay on a biological sample obtained from the subject to determine the amount or presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1), glial fibrillary acidic protein (GFAP), or both UCH-L1 and GFAP; and Visualizing the determined amount or presence of UCH-L1, GFAP, UCH-L1 and GFAP in the sample. wherein said assay does not require a device to read the amount or presence of UCH-L1, GFAP, or UCH-L1 and GFAP.
12. The method of claim 11, wherein: (a) the lateral flow assay for UCH-L1 comprises a first specific binding partner that binds to an epitope in UCH-L1 and a second specific binding partner that comprises a detectable label; and (b) the lateral flow assay for GFAP comprises a third specific binding partner that binds to an epitope in GFAP and a fourth specific binding partner that comprises a detectable label.
13. 13. The method of claim 12, wherein the first specific binding partner, the second specific binding partner, the third specific binding partner, the fourth specific binding partner, or any combination thereof, is an antibody or an antibody fragment thereof.
14. 14. A method according to any one of claims 11 to 13 for use in aiding in the diagnosis and assessment of a subject who has suffered or may have suffered a head injury.
15. 15. The method of claim 14, wherein the subject is diagnosed with a traumatic brain injury.
16. 16. The method of claim 15, wherein the subject is diagnosed as having mild, moderate, severe, or moderate to severe traumatic brain injury.
17. The method according to any one of claims 11 to 16, wherein the biological sample is a sample selected from the group consisting of a blood sample, a urine sample, a cerebrospinal fluid sample, a tissue sample, a body fluid sample, a saliva sample, an oropharyngeal specimen and a nasopharyngeal specimen.
18. 18. The method of any of claims 11 to 17, used to determine whether a subject should undergo a head computed tomography (CT) scan, a magnetic resonance imaging (MRI) scan, or both a head CT scan and an MRI scan.
19. The method of any of claims 12 to 18, wherein the detectable label is a colloidal metal particle, a colloidal non-metallic particle, a latex particle, a colored or dyed particle, or any combination thereof.
20. 20. The method of claim 19, wherein the detectable label is a colloidal metal particle.
21. 21. The method of claim 20, wherein the colloidal metal particles are gold or silver colloidal particles.
22. The method of any one of claims 12 to 21, wherein the detectable label is visible to the naked eye.
23. a first lateral flow device for detecting the presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) in said sample; a second lateral flow device for detecting the presence of glial fibrillary acidic protein (GFAP) in the sample; and Instructions for detecting the presence of UCH-L1 and GFAP in said sample 12. A kit for carrying out the method according to claim 1 or 11, comprising:
24. a lateral flow device for detecting the presence of ubiquitin carboxy-terminal hydrolase L1 (UCH-L1) and glial fibrillary acidic protein (GFAP) in said sample; and Instructions for detecting the presence of UCH-L1 and GFAP in said sample 12. A kit for carrying out the method according to claim 1 or 11, comprising:
25. 25. The kit of claim 24 comprising at least one test strip.
26. 25. The kit of claim 24, comprising at least two test strips.
27. 23. The method of any of claims 1 to 22, wherein the at least one lateral flow assay for GFAP, the at least one lateral flow assay for UCH-L1, or the at least one lateral flow assay for GFAP and the at least one lateral flow assay for UCH-L1 are performed or capable of being performed in less than about 30 minutes, less than about 25 minutes, less than about 20 minutes, less than about 18 minutes or less than about 15 minutes, respectively.
28. 23. The method of any of claims 1 to 22, wherein the at least one lateral flow assay for GFAP, the at least one lateral flow assay for UCH-L1, or the at least one lateral flow assay for GFAP and the at least one lateral flow assay for UCH-L1, are each performed or capable of being performed for a time ranging from about 4 to about 20 minutes, from about 10 to about 15 minutes, or from about 15 to about 18 minutes.
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