Improved T cell receptor costimulatory molecule chimeras
Patent Information
- Application Number
- JP2023509453
- Authority / Receiving Office
- JP · JP
- Patent Type
- Patents
- Current Assignee / Owner
- Priority Date
- 2020-12-24
- Filing Date
- 2021-05-06
- Publication Date
- 2025-03-14
- Estimated Expiration
- 2041-05-06
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Figure 0007645500000029 
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Abstract
Description
[Technical field]
[0001] The present invention relates to the field of biomedicine, to improved T cell receptor-costimulatory molecule chimeras, in particular T cell receptors (TCRs) or TCR complexes comprising costimulatory molecules, immune cells comprising TCRs or TCR complexes, and uses thereof. [Background technology]
[0002] Cell therapy, especially T cell-related therapy, has been developing rapidly this year, with chimeric antigen receptor T cell (CAR-T) therapy and TCR-T therapy attracting considerable attention.
[0003] CAR-T therapy is based on the expression of CAR molecules in T cells. CAR molecules consist of three parts: an ectodomain, which is an antigen-recognition domain derived from an antibody and is responsible for the recognition of target antigens; a transmembrane domain; and an endodomain, which is a signal molecule and a costimulatory signal molecule derived from a T cell receptor and is responsible for transmitting T cell activation signals after stimulation. When CAR molecules bind to their corresponding antigens, they aggregate and initiate the effector function of T cells to kill target tumor cells.
[0004] TCR-T therapy is based on the T cell receptor (TCR). TCR is the identity of T cells, which can be divided into αβT cells and γδT cells based on the type of TCR. During development, T precursor cells undergo VDJ rearrangement in the TCR γ and TCR δ chains, which develop into γδT cells if the rearrangement is successful, or undergo VDJ recombination in the TCR α and TCR β chains and then develop into αβT cells if the rearrangement ends in failure. αβT cells account for 90%-95% of peripheral blood T cells, and γδT cells account for 5%-10% of peripheral blood T cells. The two types of T cells recognize antigens in an MHC-restricted and MHC-unrestricted manner, respectively, and play important roles in immunity against pathogens and tumors.
[0005] T cell receptor (TCR) complex molecules contain multiple chains, TCRα and TCRβ chains (or TCRγ and TCRδ chains) are responsible for the recognition of MHC polypeptide molecules, and the other six CD3 subunits bind to the TCRα / β chains (or TCRγ / δ chains) to play a signal transduction role. The natural TCR complex contains 10 ITAM signal sequences, which can theoretically transmit stronger signals than CAR. By utilizing the signal transduction function of natural TCR, it is possible to construct a new receptor to alleviate T cell damage, which can play a better anti-solid tumor role. The ectodomain of TCR is very similar to the Fab domain of antibody, so that the variable region sequence of TCR can be replaced with the variable region sequence of antibody to obtain a synthetic TCR and antigen receptor (STAR) that not only has antibody specificity but also has the excellent signal transduction function of natural TCR for mediating T cell activation.
[0006] However, STAR-T derived from natural TCR lacks costimulatory signals for T cell activation and their proliferation and activation capacity is often affected. Therefore, there is still a need in the field for improved TCRs and corresponding TCR-T therapies. [Brief description of the drawings]
[0007] [Figure 1] Schematic diagram of STAR optimization by constant region cysteine engineering, transmembrane domain and endodomain engineering. [Diagram 2] FIG. 1 is a schematic diagram of the optimization of STAR by adding costimulatory molecule receptor endodomains to the α and / or β chains. [Diagram 3] FIG. 1 is a schematic diagram of the optimization of STAR by deletion of α- and / or β-chain endodomains followed by addition of a costimulatory molecule receptor endodomain directly or via a linker. [Figure 4] FIG. 1 is a schematic diagram of the optimization of STAR by adding a costimulatory molecule receptor endodomain to the CD3 subunit. [Diagram 5]FIG. 1 is a schematic diagram of the optimization of STAR by adding cytokine receptor signaling domains to the alpha and / or beta chains. [Figure 6] FIG. 10. Comparison of tumor target cell killing ability between WT-STAR T cells and mut-STAR T cells. [Figure 7] FIG. 1. Effect of different costimulatory receptor endodomains on the target killing capacity of STAR-T cells at different effector to target (E:T) ratios. [Figure 8] FIG. 1. Effect of different costimulatory receptor endodomains on the target killing capacity of STAR-T cells at different co-culture times. [Figure 9] FIG. 14. Effect of OX40 endodomains appended to the α, β, α and β chains on the target killing capacity of STAR-T cells at different E:T ratios. [Figure 10] FIG. 14. Effect of OX40 endodomains added to the α-chain, β-chain, α-chain and β-chain on the target killing capacity of STAR-T cells at different co-culture times. [Figure 11] FIG. 1. Effect of different costimulatory receptor endodomains on cytokine secretion in STAR-T cells. [Figure 12] FIG. 1. Effect of different costimulatory receptor endodomains on STAR-T cell proliferation. [Figure 13] FIG. 1. Effect of OX40 endodomains appended to the α, β, α and β chains on the target killing ability of STAR-T cells. [Figure 14] FIG. 14. Tumor killing capacity of mut-STAR with different costimulatory receptor endodomains linked to the TCR α chain. [Figure 15] FIG. 1. Effect of different costimulatory receptor endodomains appended to different CD3 subunits on the target killing capacity of STAR-T cells. [Figure 16] FIG. 1. Effect of different costimulatory receptor endodomains appended to different CD3 subunits on proliferation of STAR-T cells. [Figure 17]FIG. 1. Effect of OX40 endodomain linked to an endodomain-deleted α-chain via different G4S linkers on the target killing capacity of STAR-T cells. [Figure 18] FIG. 1. Effect of OX40 endodomain linked to endodomain-deleted β-chains via different G4S linkers on the target killing capacity of STAR-T cells. [Figure 19] FIG. 1. Effect of OX40 endodomain linked to endodomain-deleted α-chain and / or β-chain via different G4S linkers on IL-2 secretion in STAR-T cells. [Figure 20] FIG. 1. Effect of OX40 endodomain linked to endodomain-deleted α-chain and / or β-chain via different G4S linkers on IFN-γ secretion in STAR-T cells. [Figure 21] FIG. 1 shows the effect of OX40 endodomain linked to an endodomain-deleted α-chain via different G4S linkers on central memory T cell differentiation. [Figure 22] FIG. 1 shows the effect of OX40 endodomain linked to an endodomain-deleted α-chain via different G4S linkers on T cell differentiation. [Figure 23] FIG. 1. Effect of lysine modifications in the transmembrane or endodomain on the target killing capacity of STAR-T cells. [Figure 24] FIG. 1. Effect of lysine modifications in the transmembrane or endodomain on IFN-γ secretion in STAR-T cells. [Diagram 25] FIG. 1. Effect of lysine modifications in the transmembrane or endodomain on IL-2 secretion in STAR-T cells. [Figure 26] FIG. 1. Effect of lysine modifications in the transmembrane domain or endodomain on central memory T cell differentiation. [Figure 27] FIG. 1. Effect of lysine modifications in the transmembrane or endodomain on T cell differentiation. [Figure 28]FIG. 1. Effect of different cytokine receptor signaling transduction domains linked to the α and / or β chain on the target killing capacity of STAR-T cells. [Figure 29] FIG. 11 Comparison of killing effects between mutant STAR and α-del-(G4S)3-OX40-STAR with different cytokine receptor stimulatory domains connected. [Diagram 30] FIG. 1. Effect of different cytokine receptor signaling transduction domains linked to the α and / or β chain on IL-2 secretion in STAR-T cells. [Diagram 31] FIG. 1. Effect of different cytokine receptor signaling transduction domains linked to the α and / or β chain on IFN-γ secretion in STAR-T cells. [Diagram 32] FIG. 1. Effect of various cytokine receptor signaling transduction domains linked to the α and / or β chain on central memory T cell differentiation. [Diagram 33] FIG. 1. Effect of various cytokine receptor signaling transduction domains linked to the α and / or β chain on T cell differentiation. [Diagram 34] FIG. 14. Antitumor in vivo effects of αβ OX40-STAR T, mut-STAR T and CAR-T in an in vivo mouse tumor model. [Diagram 35] FIG. 1 shows survival curves of mice administered αβ OX40-STAR T, mut-STAR T and CAR-T. [Diagram 36] FIG. 14. In vivo expansion of αβ OX40-STAR T, mut-STAR T and CAR-T in mice. [Figure 37] FIG. 1. Antitumor in vivo efficacy of different STAR structures and CAR-T in mouse tumor models. [Figure 38] Schematic diagram of αβTCR and constant region mutants. [Figure 39] FIG. 1 is an exemplary schematic diagram of an armored-TCR. [Diagram 40]FIG. 1 is an exemplary schematic diagram of armored-CD3. [Diagram 41] FIG. 1. Proliferation and killing capacity of armored-TCR T cells with costimulatory endodomains incorporated into different TCR constant regions under chronic stimulation with excess target cells in vitro. [Diagram 42] Proliferation and killing capacity of armored-TCR T cells engineered with different costimulatory domains under chronic stimulation with excess target cells in vitro. A: E141-TCR; B: E315-TCR. [Diagram 43] FIG. 1 shows the proliferation and killing capacity of (G4S)n linker-containing armored-TCR T cells with or without deletion of the endodomain of the TCR molecule under chronic stimulation with excess target cells in vitro. [Diagram 44] Proliferation and killing capacity of armored-TCR T cells bearing TCR α, β, or α and β chains linked to the 4-1BB endodomain under chronic stimulation with excess target cells in vitro. A: E141-TCR; B: E315-TCR. [Diagram 45] Proliferation and killing capacity of armored-TCR T cells bearing TCR α, β, or TCR α and β chains linked to the OX40 endodomain under chronic stimulation with excess target cells in vitro. A: E141-TCR; B: E315-TCR. [Figure 46] FIG. 13 shows the effect of OX40 and CD40 intracellular domains linked by a G4S linker on TCR-T cell proliferation and target cell killing capacity, with or without deletion of TCRα, αβ or addition to CD3δ molecules, under chronic stimulation with excess target cells in vitro. [Figure 47] FIG. 1. Experimental scheme of mouse tumor model for evaluation of armored-TCR T cell function and in vivo imaging results of tumor progression. [Figure 48] Statistical graphs of human TCR T cell proliferation in mice. [Figure 49]FIG. 13. Survival curves of tumor-bearing mice after reinfusion of armored-TCR T cells. [Figure 50] FIG. 1 shows the proliferation and killing capacity of TCR T cells expressing armored-CD3 molecules under long-term stimulation with excess target cells in vitro. [Figure 51] FIG. 1. Detection of the killing capacity of TCR T cells expressing armored-CD3 molecules after 7 days of excessive target cell stimulation in vitro. [Figure 52] FIG. 14. IFNγ release from TCR T cells expressing armored-CD3 molecules after 7 days of excessive target cell stimulation in vitro. [Figure 53] FIG. 1 shows the experimental scheme of a mouse tumor model for the evaluation of the function of TCR T cells expressing armored-CD3 molecules and the results of in vivo imaging of tumor progression. [Figure 54] Statistical graph of proliferation of TCR T cells expressing human armored-CD3 in mice. [Figure 55] FIG. 13. Survival curves of tumor-bearing mice after reinfusion of armored-TCR T cells. [Figure 56] FIG. 1 shows the effect on the killing ability of γδTCR T cells having an OX40 endodomain linked directly to the C-terminus of the constant regions of the TCR γ chain, TCR δ chain, TCR γ and δ chain, directly to the C-terminus of the TCR γ chain and δ chain via a G4S linker, or to the C-terminus of the TCR γ chain and δ chain with intracellular amino acids deleted. [Figure 57] FIG. 1 shows the effect on IFNγ secretion of γδTCR T cells having an OX40 endodomain linked directly to the C-terminus of the constant regions of the TCRγ chain, TCRδ chain, TCRγ and δ chain, directly to the C-terminus of the TCRγ and δ chain via a G4S linker, or to the C-terminus of the TCRγ and δ chain with intracellular amino acids deleted. [Figure 58] FIG. 1 is a schematic diagram of the optimization of STAR by constant region cysteine engineering, transmembrane domain and N-terminal rearrangements. [Figure 59]FIG. 1 is a diagram of an example of the linkage position of a costimulatory molecule domain to a STAR structure. Only the connection to the alpha chain is shown. [Figure 60] FIG. 1 is a diagram of an example of a STAR structure containing a costimulatory molecule domain. [Figure 61] FIG. 11. Killing capacity of STAR and STAR with costimulatory factors. [Figure 62] FIG. 11. Nuclear RelB levels in relation to STAR and multi-STAR proliferation signals including costimulatory factors. [Figure 63] FIG. 14. Anti-CD19 results against different STARs. [Figure 64] FIG. 14. Anti-CD19 and CD20 results against different STARs. Detailed Description of the Invention
[0008] Unless otherwise indicated or defined, all terms used have their common meaning in the art as understood by those skilled in the art. See, for example, standard manuals such as Sambrook et al., "Molecular cloning: a laboratory manual"; Lewin, "Genes VIII" and Roitt et al., "Immunology" (8th edition) and the general prior art cited herein; and further, unless otherwise indicated, all methods, steps, techniques and operations not specifically detailed may be and are performed in a manner known per se and will be understood by those skilled in the art. See, for example, the standard manuals, the general prior art cited above and other references cited therein.
[0009] As used herein, the term "and / or" includes all combinations of the items associated with that term, which shall be considered as separately listed herein. For example, "A and / or B" covers "A," "A and B," and "B." For example, "A, B, and / or C" covers "A," "B," "C," "A and B," "A and C," "B and C," and "A and B and C."
[0010] The term "comprises" is used herein to describe a protein or nucleic acid sequence, which may consist of said sequence, or may have additional amino acids or nucleotides at one or both termini of said protein or nucleic acid, but still have the activity described herein. Furthermore, those skilled in the art will understand that a methionine encoded by a start codon at the N-terminus of a polypeptide may be retained in certain practical situations (e.g., when expressed in a particular expression system), but without substantially affecting the function of the polypeptide. Thus, the description of a particular polypeptide amino acid sequence, which may not contain a methionine encoded by a start codon at its N-terminus, still encompasses a sequence that includes a methionine up to that point, and correspondingly, its coding nucleotide sequence may also contain a start codon, and vice versa.
[0011] As used herein, "amino acid number refers to SEQ ID NO: x" (SEQ ID NO: x is a particular sequence listed herein) means that the position number of a particular amino acid described is the position number of the amino acid corresponding to that amino acid on SEQ ID NO: x. Amino acid correspondence between different amino acid sequences can be determined by sequence alignment methods known in the art. For example, amino acid correspondence can be determined by the EMBL-EBI online alignment tool (https: / / www.ebi.ac.uk / Tools / psa / ), which can align two sequences using the Needleman-Wunsch algorithm with default parameters. For example, if an alanine at position 46 starting from the N-terminus of a polypeptide is aligned in a sequence alignment with an amino acid at position 48 of SEQ ID NO: x, the amino acid in the polypeptide can also be described herein as "an alanine at position 48 of the polypeptide, the amino acid position refers to SEQ ID NO: x". In the present invention, for amino acid positions related to the α chain constant region, reference is made to SEQ ID NO: 3. In the present invention, for amino acid positions related to the β chain constant region, reference is made to SEQ ID NO: 4.
[0012] In one aspect, there is provided herein a modified T cell receptor (TCR) complex, wherein the TCR can be an αβTCR, the αβTCR complex comprising a TCR α chain, a TCR β chain, CD3ε, CD3γ, CD3δ and CD3ζ, and at least one functional domain is connected to the C-terminus of at least one of the TCR α chain, the TCR β chain, CD3ε, CD3γ, CD3δ and CD3ζ, wherein the TCR α chain comprises a first constant region and the TCR β chain comprises a second constant region, or The TCR may be a γδTCR, and the γδTCR complex comprises a TCRγ chain, a TCRδ chain, CD3ε, CD3γ, CD3δ and CD3ζ, and at least one functional domain is connected to the C-terminus of at least one of the TCRγ chain, the TCRδ chain, CD3ε, CD3γ, CD3δ and CD3ζ, and the TCRγ chain comprises a first constant region and the TCRδ chain comprises a second constant region.
[0013] In some embodiments, the TCR alpha chain further comprises a first target binding region. In some embodiments, the TCR beta chain further comprises a second target binding region. In some embodiments, the TCR alpha chain further comprises a first target binding region and the TCR beta chain further comprises a second target binding region.
[0014] In some embodiments, the TCR gamma chain further comprises a first target binding region. In some embodiments, the TCR delta chain further comprises a second target binding region. In some embodiments, the TCR gamma chain further comprises a first target binding region and the TCR delta chain further comprises a second target binding region.
[0015] Generally, in the TCR, the target binding region is located N-terminal to the constant region, and both can be connected directly or via a linker.
[0016] In one aspect, there is provided herein a modified T cell receptor (TCR), wherein the TCR may be an αβTCR comprising a TCR α chain and a β chain, and at least one functional domain is connected to the C-terminus of the TCR α chain and / or the β chain, wherein the TCR α chain comprises a first constant region and the TCR β chain comprises a second constant region; or The TCR may be a γδTCR comprising a TCR γ chain and a δ chain, and at least one functional domain is connected to the C-terminus of the TCR γ chain and / or the δ chain, wherein the TCR γ chain comprises a first constant region and the TCR δ chain comprises a second constant region.
[0017] In some embodiments, the TCR alpha chain further comprises a first target binding region. In some embodiments, the TCR beta chain further comprises a second target binding region. In some embodiments, the TCR alpha chain further comprises a first target binding region and the TCR beta chain further comprises a second target binding region.
[0018] In some embodiments, the TCR gamma chain further comprises a first target binding region. In some embodiments, the TCR delta chain further comprises a second target binding region. In some embodiments, the TCR gamma chain further comprises a first target binding region and the TCR delta chain further comprises a second target binding region.
[0019] In some embodiments, at least one of the native endodomains of the TCR alpha chain, the TCR beta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the alpha beta TCR complex is deleted, or at least one of the native endodomains of the TCR gamma chain, the TCR delta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the gamma delta TCR complex is deleted.
[0020] In some embodiments, the natural endodomains of the TCR alpha and / or TCR beta chains in an αβTCR are deleted, or the natural endodomains of the TCR gamma and / or TCR delta chains in a γδTCR complex are deleted.
[0021] In some embodiments, in the αβTCR complex, the functional domain is linked, directly or via a linker, to the C-terminus of at least one of the TCR α chain, TCR β chain, CD3ε, CD3γ, CD3δ and CD3ζ, which lacks a native endodomain.
[0022] In some embodiments, in the αβTCR complex, the functional domain is linked directly or via a linker to the C-terminus of the TCR α and TCR β chains that lack the native endodomain.
[0023] In some embodiments, in the γδ TCR complex, the functional domain is linked, directly or via a linker, to the C-terminus of at least one of the TCR α chain, TCR β chain, CD3ε, CD3γ, CD3δ and CD3ζ, which lacks a native endodomain.
[0024] In some embodiments, in a γδTCR complex, a functional domain is connected directly or via a linker to the C-terminus of at least one of a TCR γ chain, a TCR δ chain that has a deleted native endodomain.
[0025] In some embodiments, the linker is (G4S)n, where n represents an integer from 1 to 10. Preferably, n is an integer from 1 to 6, more preferably n is an integer from 2 to 5, and most preferably n is 3.
[0026] In some embodiments, at least one functional domain is attached to the C-terminus of one of the TCR alpha chain, the TCR beta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the alpha beta TCR complex.
[0027] In some embodiments, at least one functional domain is attached to the C-terminus of the TCR α chain and / or the TCR β chain in an αβTCR.
[0028] In some embodiments, at least one functional domain is attached to the C-terminus of one of the TCR gamma chain, the TCR delta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the gamma delta TCR complex.
[0029] In some embodiments, at least one functional domain is connected to the C-terminus of the TCR gamma chain and / or the TCR delta chain in a γδ TCR.
[0030] In some embodiments, CD3δ, CD3γ, CD3ε and CD3ζ in the TCR complex do not comprise at least one functional domain further attached to their C-terminus.
[0031] In some embodiments, at least one functional domain is attached to the C-terminus of the TCR alpha chain in the alpha beta TCR complex.
[0032] In some embodiments, at least one functional domain is attached to the C-terminus of the TCR alpha chain of an alpha beta TCR.
[0033] In some embodiments, the native endodomain of the TCR α chain is deleted.
[0034] In some embodiments, the functional domain is connected directly or via a linker to the C-terminus of a TCR α chain lacking the native endodomain, in some embodiments the linker is (G4S)n, where n represents an integer between 1 and 10, preferably between 1 and 6, more preferably between 2 and 5, and most preferably n is 3.
[0035] In some embodiments, at least one functional domain is connected to the C-terminus of a TCR β chain in the αβTCR complex.
[0036] In some embodiments, at least one functional domain is attached to the C-terminus of the TCR β chain of the αβTCR.
[0037] In some embodiments, the native endodomain of the TCR β chain is deleted.
[0038] In some embodiments, the functional domain is connected directly or via a linker to the C-terminus of a TCR β chain lacking the native endodomain, in some embodiments the linker is (G4S)n, where n represents an integer of 1 to 10, preferably 1 to 6, more preferably 2 to 5, and most preferably n is 3.
[0039] In some embodiments, at least one functional domain is connected to the C-terminus of the TCR gamma chain in the γδTCR complex.
[0040] In some embodiments, at least one functional domain is connected to the C-terminus of the TCR gamma chain in a γδTCR.
[0041] In some embodiments, the native endodomain of the TCR gamma chain is deleted.
[0042] In some embodiments, the functional domain is connected directly or via a linker to the C-terminus of a TCR gamma chain lacking the native endodomain, in some embodiments the linker is (G4S)n, where n represents an integer between 1 and 10, preferably between 1 and 6, more preferably between 2 and 5, and most preferably n is 3.
[0043] In some embodiments, at least one functional domain is connected to the C-terminus of the TCR δ chain in the γδ TCR complex.
[0044] In some embodiments, at least one functional domain is connected to the C-terminus of the TCR δ chain in a γδ TCR.
[0045] In some embodiments, the native endodomain of the TCR δ chain is deleted.
[0046] In some embodiments, the functional domain is connected directly or via a linker to the C-terminus of a TCR δ chain lacking the native endodomain, in some embodiments the linker is (G4S)n, where n represents an integer between 1 and 10, preferably between 1 and 6, more preferably between 2 and 5, and most preferably n is 3.
[0047] In some embodiments, at least one functional domain is connected to the C-terminus of two of the TCR α chain, the TCR β chain, CD3ε, CD3γ, CD3δ and CD3ζ in the αβTCR complex.
[0048] In some embodiments, at least one functional domain is connected to the C-terminus of two of the TCR gamma chain, the TCR delta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the gamma delta TCR complex.
[0049] In some embodiments, at least one functional domain is attached to the C-terminus of each of the TCR α and TCR β chains in the αβTCR complex.
[0050] In some embodiments, at least one functional domain is attached to the C-terminus of each of the TCR α and TCR β chains of an αβTCR.
[0051] In some embodiments, the native endodomains of each of the TCR α and TCR β chains are deleted.
[0052] In some embodiments, the functional domain is connected directly or via a linker to the C-terminus of each of the TCR α and TCR β chains lacking the native endodomain. In some embodiments, the linker is (G4S)n, where n represents an integer of 1 to 10, preferably 1 to 6, more preferably 2 to 5, and most preferably n is 3.
[0053] In some embodiments, at least one functional domain is connected to the C-terminus of each of the TCR gamma and TCR delta chains in a γδTCR complex.
[0054] In some embodiments, at least one functional domain is connected to the C-terminus of each of the TCR gamma and TCR delta chains of a γδTCR.
[0055] In some embodiments, the native endodomains of each of the TCR gamma and TCR delta chains are deleted.
[0056] In some embodiments, the functional domain is connected directly or via a linker to the C-terminus of each of the TCR γ chain and the TCR δ chain from which the native endodomain has been deleted. In some embodiments, the linker is (G4S)n, where n represents an integer of 1 to 10, preferably 1 to 6, more preferably 2 to 5, and most preferably n is 3.
[0057] In some embodiments, two or more of the TCR alpha chain, the TCR beta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in an alpha beta TCR complex are associated with the same or different functional domains.
[0058] In some embodiments, the TCR α and / or TCR β chains in an αβTCR are connected to the same or different functional domains.
[0059] In some embodiments, two or more of the TCR gamma chain, TCR delta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in a γδ TCR complex are connected to the same or different functional domains.
[0060] In some embodiments, the TCR gamma and / or TCR delta chains in a γδ TCR are connected to the same or different functional domains.
[0061] In some embodiments, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more functional domains are attached to the C-terminus of at least one of the TCR alpha chain, the TCR beta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the alpha beta TCR complex.
[0062] In some embodiments, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more functional domains are attached to the C-terminus of the TCR α chain and / or the TCR β chain in an αβTCR.
[0063] In some embodiments, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more functional domains are attached to the C-terminus of at least one of the TCR gamma chain, the TCR delta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the gamma delta TCR complex.
[0064] In some embodiments, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more functional domains are connected to the C-terminus of the TCR gamma chain and / or the TCR delta chain in a γδ TCR.
[0065] In some embodiments, at least one functional domain, such as a costimulatory molecule endodomain, is linked to one, two, three, four, five or six C-terminus of the TCR alpha chain, the TCR beta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the complex.
[0066] In some embodiments, at least one functional domain, such as a costimulatory molecule endodomain, is linked to the C-terminus of one of the TCR alpha chain, TCR beta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the complex.
[0067] For example, in some embodiments, at least one functional domain (such as a costimulatory molecule endodomain) is attached to the C-terminus of the TCR alpha chain in the complex. In some preferred embodiments, the costimulatory molecule endodomain is OX40 or ICOS. In some embodiments, the TCR beta chain, CD3 delta, CD3 gamma, CD3 epsilon and CD3 zeta do not comprise at least one functional domain, such as a costimulatory molecule endodomain, further attached to their C-terminus.
[0068] Alternatively, in some embodiments, at least one functional domain, such as a costimulatory molecule endodomain, is attached to the C-terminus of CD3δ in the complex, hi some embodiments, TCRα, TCRβ, CD3γ, CD3ε and CD3ζ do not contain at least one functional domain, such as a costimulatory molecule endodomain, attached to their C-terminus.
[0069] In some embodiments, at least one functional domain, such as a costimulatory molecule endodomain, is linked to two C-termini of the TCR alpha chain, the TCR beta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta in the complex.
[0070] For example, in some embodiments, at least one functional domain, such as a costimulatory molecule endodomain, is attached to the C-terminus of the TCR alpha and beta chains in the complex. In some preferred embodiments, the costimulatory molecule endodomain is OX40 or ICOS. In some embodiments, CD3 delta, CD3 gamma, CD3 epsilon and CD3 zeta do not contain at least one functional domain, such as a costimulatory molecule endodomain, further attached to their C-terminus.
[0071] In some embodiments, the functional domain is an exogenous functional domain. In some embodiments, the functional domain is an exogenous endodomain, such as a domain responsible for an intracellular transduction function.
[0072] As used herein, "exogenous" refers to a protein or nucleic acid sequence that originates from a foreign species or, if from the same species, that has been significantly altered in composition and / or location from its native form by deliberate human intervention.
[0073] As used herein, a "functional domain" is selected from the endodomains of costimulatory molecules such as CD40, OX40, ICOS, CD28, 4-1BB, CD27, and CD137; or the endodomains of co-inhibitory molecules such as TIM3, PD1, CTLA4, and LAG3; or the endodomains of cytokine receptors such as interleukin receptors (e.g., IL-2 receptor, IL-7α receptor, or IL-21 receptor), interferon receptors, tumor necrosis factor superfamily receptors, colony stimulating factor receptors, chemokine receptors, growth factor receptors, or other membrane proteins, or the domains of intracellular proteins such as NIK. The functional domain can also be a fusion of a cytokine receptor endodomain with a human STAT5 activating portion (amino acid sequence shown in SEQ ID NO: 35), either directly or via a linker (e.g., (G4S)n, where n represents an integer between 1 and 10).
[0074] In some preferred embodiments, the functional domain is a costimulatory molecule endodomain, preferably an OX40 or ICOS endodomain, more preferably an OX40 endodomain.
[0075] An exemplary CD40 endodomain contains the amino acid sequence set forth in SEQ ID NO: 10. An exemplary OX40 endodomain contains the amino acid sequence set forth in SEQ ID NO: 11. An exemplary ICOS endodomain contains the amino acid sequence set forth in SEQ ID NO: 12. An exemplary CD28 endodomain contains the amino acid sequence set forth in SEQ ID NO: 13. An exemplary 4-1BB endodomain contains the amino acid sequence set forth in SEQ ID NO: 14. An exemplary CD27 endodomain contains the amino acid sequence set forth in SEQ ID NO: 15. An exemplary IL-2β receptor endodomain contains the amino acid sequence set forth in SEQ ID NO: 32. An exemplary IL-17α receptor endodomain contains the amino acid sequence set forth in SEQ ID NO: 33. An exemplary IL-21 receptor endodomain contains the amino acid sequence set forth in SEQ ID NO: 34. An exemplary fusion amino acid sequence of an IL-2β receptor endodomain and a human STAT5 activating portion is set forth in SEQ ID NO: 36. An exemplary fusion amino acid sequence of an IL-17α receptor endodomain and a human STAT5 activating portion is set forth in SEQ ID NO: 37.
[0076] In some embodiments, the first constant region is a native TCR alpha chain constant region, such as a native human TCR alpha chain constant region (an exemplary human TCR alpha chain constant region amino acid sequence is set forth in SEQ ID NO:1) or a native mouse TCR alpha chain constant region (an exemplary mouse TCR alpha chain constant region amino acid sequence is set forth in SEQ ID NO:3), or the first constant region is a native TCR gamma chain constant region, such as a native human TCR gamma chain constant region (an exemplary human TCR gamma chain constant region amino acid sequence is set forth in SEQ ID NO:58) or a native mouse TCR gamma chain constant region (an exemplary mouse TCR gamma chain constant region amino acid sequence is set forth in SEQ ID NO:59).
[0077] In some embodiments, the first constant region is a modified TCR alpha chain constant region or a modified TCR gamma chain constant region.
[0078] In some embodiments, the modified TCR alpha chain constant region is derived from a mouse TCR alpha chain constant region in which the amino acid at position 48, such as threonine (T), is mutated to cysteine (C) compared to the wild-type mouse TCR alpha chain constant region.
[0079] In some embodiments, the modified TCR alpha chain constant region is derived from a mouse TCR alpha chain constant region in which, compared to the wild-type mouse TCR alpha chain constant region, the amino acid at position 112, such as serine (S), is mutated to leucine (L), the amino acid at position 114, such as methionine (M), is mutated to isoleucine (I), and the amino acid at position 115, such as glycine (G), is mutated to valine (V).
[0080] In some embodiments, the modified TCR α chain constant region is derived from a mouse TCR α chain constant region in which, compared to the wild-type mouse TCR α chain constant region, the amino acid at position 6 (e.g., E) is replaced with D, the K at position 13 is replaced with R, and the amino acids at positions 15 to 18 are deleted.
[0081] In some embodiments, the modified TCR alpha chain constant region is derived from a mouse TCR alpha chain constant region in which, compared to the wild-type mouse TCR alpha chain constant region, the amino acid at position 48, such as tyrosine (T), is mutated to cysteine (C), the amino acid at position 112, such as serine (S), is mutated to leucine (L), the amino acid at position 114, such as methionine (M), is mutated to isoleucine (I), and the amino acid at position 115, such as glycine (G), is mutated to valine (V).
[0082] In some embodiments, the modified TCR α chain constant region is derived from a mouse TCR α chain constant region in which, compared to a wild-type mouse TCR α chain constant region, the amino acid at position 6 (e.g., E) is substituted with D, K at position 13 is substituted with R, amino acids at positions 15 to 18 are deleted, the amino acid at position 48, such as threonine (T), is mutated to cysteine (C), the amino acid at position 112, such as serine (S), is mutated to leucine (L), the amino acid at position 114, such as methionine (M), is mutated to isoleucine (I), and the amino acid at position 115, such as glycine (G), is mutated to valine (V).
[0083] In some embodiments, the modified TCR α chain constant region is derived from a mouse TCR α chain constant region in which the constant region endodomain is deleted compared to the wild-type mouse TCR α chain constant region, e.g., amino acids 136-137 are deleted.
[0084] In some embodiments, the first constant region comprises an amino acid sequence set forth in one of SEQ ID NOs: 1, 3, 5, 7, 8, 26, 41, 42 and 56.
[0085] In some embodiments, the second constant region is a native TCR β chain constant region, such as a native human TCR β chain constant region (an exemplary human TCR β chain constant region amino acid sequence is set forth in SEQ ID NO: 2) or a native mouse TCR β chain constant region (an exemplary mouse TCR β chain constant region amino acid sequence is set forth in SEQ ID NO: 4), or the second constant region is a native TCR δ chain constant region, such as a native human TCR δ chain constant region (an exemplary human TCR δ chain constant region amino acid sequence is set forth in SEQ ID NO: 60) or a native mouse TCR δ chain constant region (an exemplary mouse TCR δ chain constant region amino acid sequence is set forth in SEQ ID NO: 61).
[0086] In some embodiments, the second constant region is a modified TCR β chain constant region or a modified TCR δ chain constant region.
[0087] In some embodiments, the modified TCR β chain constant region is derived from a mouse TCR β chain constant region in which the amino acid at position 56, such as threonine (S), is mutated to cysteine (C) compared to the wild-type mouse TCR β chain constant region.
[0088] In some embodiments, the modified TCR β chain constant region is derived from a mouse TCR β chain constant region in which, compared to the wild-type mouse TCR β chain constant region, the amino acid at position 6 (e.g., R) is replaced with K, the amino acid at position 6 (e.g., T) is replaced with F, the K at position 9 is replaced with E, the S at position 11 is replaced with A, the L at position 12 is replaced with V, and the amino acids at positions 17 and 21 to 25 are deleted.
[0089] In some embodiments, the modified TCR β chain constant region is derived from a mouse TCR β chain constant region in which, compared to the wild-type mouse TCR β chain constant region, the amino acid at position 56, such as serine (S), is mutated to cysteine (C), the amino acid at position 3 (e.g., R) is substituted with K, the amino acid at position 6 (e.g., T) is substituted with F, the K at position 9 is substituted with E, the S at position 11 is substituted with A, the L at position 12 is substituted with V, and the amino acids at positions 17 and 21 to 25 are deleted.
[0090] In some embodiments, the modified TCR β chain constant region is derived from a mouse TCR β chain constant region in which the constant region endodomain is deleted, for example, amino acids 167 to 172 are deleted, compared to a wild-type mouse TCR β chain constant region.
[0091] In some embodiments, the modified TCR β chain constant region comprises an amino acid sequence set forth in one of SEQ ID NOs: 2, 4, 6, 9, 27, 43, and 57.
[0092] As used herein, a "target binding region" refers to a domain capable of binding (preferably specifically binding) to a target molecule. In some embodiments, the target is an antigen. Thus, in some embodiments, the target binding region is an "antigen binding region."
[0093] In some embodiments, a target binding region (preferably an antigen binding region), alone or in combination with another target binding region (preferably an antigen binding region), can specifically bind to a target molecule (preferably a target antigen).
[0094] In some embodiments, the first target binding region and the second target binding region combine with each other to specifically bind to a target antigen.
[0095] In some embodiments, the antigen-binding region is derived from an antibody that specifically binds to a target antigen. In some embodiments, the antigen-binding region may also be derived from a specific receptor, whose ligand may serve as the antigen to be targeted. For example, the specific receptor may be a natural T cell receptor. In some embodiments, the antigen-binding region comprises a variable region from a natural T cell receptor. In some embodiments, the antigen-binding region may also be derived from a ligand, particularly when the antigen to be targeted is a receptor.
[0096] In some embodiments, the antigen binding region is derived from a natural specific T cell receptor. In some embodiments, the first antigen binding region comprises the variable region set forth in SEQ ID NO: 44, and the second antigen binding region comprises the variable region set forth in SEQ ID NO: 45. In some embodiments, the first antigen binding region comprises the variable region set forth in SEQ ID NO: 46, and the second antigen binding region comprises the variable region set forth in SEQ ID NO: 47. In some embodiments, the first antigen binding region comprises the variable region set forth in SEQ ID NO: 48, and the second antigen binding region comprises the variable region set forth in SEQ ID NO: 49.
[0097] In some embodiments, the target antigen is a disease-associated antigen, preferably a cancer-associated antigen, such as phosphatidylinositol proteoglycan 3 (GPC3), CD16, CD64, CD78, CD96, CLL1, CD116, CD117, CD71, CD45, CD71, CD123, CD138, ErbB2 (HER2 / neu), carcinoembryonic antigen (CEA), epithelial cell adhesion molecule (EpCAM), epidermal growth factor receptor (EGFR), EGFR variant III (EGFRvIII), CD19, CD20, CD30, CD40, disialoganglioside GD2, ductal epithelial mucin, gp36, TAG-72, glycosphingolipids, glioma-associated antigen, β-human chorionic gonadotropin, α-fetal globulin (AFP), exogenous lectin-reactive AFP, thyroglobulin, RAGE-1, MN-CA IX, human telomerase reverse transcriptase, RU1, RU2 (AS), intestinal carboxylesterase, mut hsp70-2, M-CSF, prostase, prostate specific antigen (PSA), PAP, NY-ESO-1, LAGA-1a, p53, Prostein, PSMA, survival and telomerase, prostate cancer tumor antigen-1 (PCTA-1), MAGE, ELF2M, neutrophil elastase, ephrin B2, CD22, insulin growth factor (IGF1)-I, IGF-II, IGFI receptor, mesothelin, major histocompatibility complex (MHC) molecules presenting tumor-specific peptide epitopes, 5T4, ROR1, Nkp30, NKG2D, tumor matrix antigen, ectodomain A (EDA) and ectodomain B (EDB) of fibronectin, A1 domain of tenascin-C (TnC A1), fibroblast-associated protein (fap), CD3, CD4, CD8, CD24, CD25, CD33, CD34, CD133, CD138, Foxp3, B7-1 (CD80), B7-2 (CD86), GM-CSF, cytokine receptors, endothelial factors, major histocompatibility complex (MHC) molecules, BCMA (CD269, TNFRSF17), TNFRSF17 (UNIPROT Q02223), SLAMF7 (UNIPROT Q9NQ25), GPRC5D (UNIPROT Q9NZD1), FKBP11 (UNIPROT Q9NYL4), KAMP3, ITGA8 (UNIPROT P53708) and FCRL5 (UNIPROTThe cancer-associated antigen is selected from the group consisting of:
[0098] In some embodiments, the target antigen is an antigen derived from a pathogen, such as RSVF (respiratory syncytial virus prophylaxis), PA (inhalation anthrax), CD4 (HIV infection), or a surface antigen of a cell infected with the pathogen.
[0099] In some embodiments, the target antigen is a disease-causing cell or molecule produced and secreted by cells, such as CD3 (including transplant rejection), CD25 (including acute rejection of renal transplants), C5 (including paroxysmal nocturnal hemoglobinuria), IL-1β (including cryopyrin-associated periodic syndromes), RANKL (including cancer-associated bone damage), von Willebrand factor (including adult acquired thrombotic thrombocytopenic purpura), plasma kallikrein (including angioedema), calcitonin gene-related peptide receptor (including adult migraine headache), FGF23 (including X-linked hypophosphatemia), etc.
[0100] The antigen-binding region may be derived from one or more known antibodies, including any commercially available antibody, such as FMC63, rituximab, alemtuzumab, epratuzumab, trastuzumab, bivatuzumab, cetuximab, labetuzumab, palivizumab, sevirumab, tuvilumab, basiliximab, daclizumab, infliximab, omalizumab, efalizumab, keliximab, siplizumab, natalizumab, clenoliximab, pemtumomab, edrecolomab, cantuzumab, etc.
[0101] In some embodiments, the first antigen-binding region comprises a heavy chain variable region of an antibody that specifically binds to a target antigen and the second antigen-binding region comprises a light chain variable region of the antibody, or the first antigen-binding region comprises a light chain variable region of an antibody that specifically binds to a target antigen and the second antigen-binding region comprises a heavy chain variable region of the antibody.
[0102] In some embodiments, the first antigen-binding region comprises a single chain antibody or a single domain antibody that specifically binds to a target antigen, and / or the second antigen-binding region comprises a single chain antibody or a single domain antibody that specifically binds to a target antigen.
[0103] In some embodiments, a single chain antibody comprises a heavy chain variable region and a light chain variable region linked by a linker such as (G4S)n, where n represents an integer from 1 to 10, preferably n is 1 or 3.
[0104] In some embodiments, the first antigen-binding region and the second antigen-binding region bind to the same target antigen.
[0105] In some embodiments, the first antigen-binding region and the second antigen-binding region bind to different regions (e.g., different epitopes) of the same target antigen.
[0106] In some embodiments, the first antigen-binding region and the second antigen-binding region bind to different target antigens.
[0107] For example, in some exemplary embodiments, the two antigen-binding regions may bind to CD19 and CD20, respectively, or to CD19 and CD22, respectively, or to CD38 and BCMA, respectively, or to PDL1 and EGFR, respectively, In some embodiments, the first antigen-binding region and / or the second antigen-binding region specifically binds to CD19.
[0108] In some embodiments, the first antigen binding region comprises the heavy chain variable region amino acid sequence set forth in SEQ ID NO:50 and the second antigen binding region comprises the light chain variable region amino acid sequence set forth in SEQ ID NO:51; alternatively, the first antigen binding region comprises the light chain variable region amino acid sequence as set forth in SEQ ID NO:51 and the second antigen binding region comprises the heavy chain variable region amino acid sequence as set forth in SEQ ID NO:50, whereby the TCR or TCR complex specifically binds to CD19.
[0109] In some embodiments, the first antigen-binding region comprises the light chain variable region amino acid sequence set forth in SEQ ID NO: 52 and the second antigen-binding region comprises the heavy chain variable region amino acid sequence set forth in SEQ ID NO: 53; alternatively, the first antigen-binding region comprises the heavy chain variable region amino acid sequence set forth in SEQ ID NO: 53 and the second antigen-binding region comprises the light chain variable region amino acid sequence set forth in SEQ ID NO: 52, whereby the TCR or TCR complex specifically binds to GPC3.
[0110] In some embodiments, the first antigen binding region comprises the heavy chain variable region amino acid sequence set forth in SEQ ID NO:54 and the second antigen binding region comprises the light chain variable region amino acid sequence set forth in SEQ ID NO:55; alternatively, the first antigen binding region comprises the light chain variable region amino acid sequence as set forth in SEQ ID NO:55 and the second antigen binding region comprises the heavy chain variable region amino acid sequence as set forth in SEQ ID NO:54, whereby the TCR or TCR complex specifically binds to CD19.
[0111] In some embodiments, the first antigen binding region comprises the heavy chain variable region amino acid sequence set forth in SEQ ID NO:62 and the second antigen binding region comprises the light chain variable region amino acid sequence set forth in SEQ ID NO:63; alternatively, the first antigen binding region comprises the light chain variable region amino acid sequence as set forth in SEQ ID NO:63 and the second antigen binding region comprises the heavy chain variable region amino acid sequence as set forth in SEQ ID NO:62, whereby the TCR or TCR complex specifically binds to CD20.
[0112] In some embodiments, the first antigen-binding region and / or the second antigen-binding region comprises a single chain antibody comprising the heavy chain variable region amino acid sequence set forth in SEQ ID NO:50 and the light chain variable region amino acid sequence set forth in SEQ ID NO:51, whereby the first antigen-binding region and / or the second antigen-binding region specifically binds to CD19. In certain embodiments, the heavy chain variable region amino acid sequence set forth in SEQ ID NO:50 and the light chain variable region amino acid sequence set forth in SEQ ID NO:51 are connected via a linker. In some embodiments, the linker is (G4S)n, where n represents an integer from 1 to 10, preferably n is 1 or 3.
[0113] In some embodiments, the first antigen-binding region and / or the second antigen-binding region comprises a single chain antibody comprising the heavy chain variable region amino acid sequence set forth in SEQ ID NO: 62 and the light chain variable region amino acid sequence set forth in SEQ ID NO: 63, whereby the first antigen-binding region and / or the second antigen-binding region specifically binds to CD20. In certain embodiments, the heavy chain variable region amino acid sequence set forth in SEQ ID NO: 62 and the light chain variable region amino acid sequence set forth in SEQ ID NO: 63 are connected via a linker. In some embodiments, the linker is (G4S)n, where n represents an integer from 1 to 10, preferably n is 1 or 3.
[0114] In some embodiments, the first antigen-binding region and / or the second antigen-binding region comprises a single-chain antibody comprising the heavy chain variable region amino acid sequence shown in SEQ ID NO: 52 and the light chain variable region amino acid sequence shown in SEQ ID NO: 53, whereby the first antigen-binding region and / or the second antigen-binding region specifically binds to GPC3. In certain embodiments, the heavy chain variable region amino acid sequence shown in SEQ ID NO: 52 and the light chain variable region amino acid sequence shown in SEQ ID NO: 53 are connected via a linker. In some embodiments, the linker is (G4S)n, where n represents an integer of 1 to 10, preferably n is 1 or 3.
[0115] In some embodiments, the first antigen-binding region and / or the second antigen-binding region comprises a single chain antibody comprising the heavy chain variable region amino acid sequence set forth in SEQ ID NO: 54 and the light chain variable region amino acid sequence set forth in SEQ ID NO: 55, whereby the first antigen-binding region and / or the second antigen-binding region specifically binds to CD19. In some embodiments, the heavy chain variable region amino acid sequence set forth in SEQ ID NO: 54 and the light chain variable region amino acid sequence set forth in SEQ ID NO: 55 are connected via a linker. In some embodiments, the linker is (G4S)n, where n represents an integer from 1 to 10, preferably n is 1 or 3.
[0116] In some embodiments, the first antigen-binding region comprises the scFv amino acid sequence set forth in SEQ ID NO:38 and the second antigen-binding region comprises the scFv amino acid sequence set forth in SEQ ID NO:39; alternatively, the first antigen-binding region comprises the scFv amino acid sequence set forth in SEQ ID NO:39 and the second antigen-binding region comprises the scFv amino acid sequence set forth in SEQ ID NO:38, whereby the TCR or TCR complex specifically binds to both CD19 and CD20.
[0117] In some embodiments, CD3γ, CD3δ, CD3ε and / or CD3ζ are humanized. In some embodiments, the human CD3γ comprises the amino acid sequence set forth in SEQ ID NO:28. In some embodiments, the human CD3γ comprises the amino acid sequence set forth in SEQ ID NO:29. In some embodiments, the human CD3γ comprises the amino acid sequence set forth in SEQ ID NO:30. In some embodiments, the human CD3γ comprises the amino acid sequence set forth in SEQ ID NO:31.
[0118] In another aspect, provided herein is an isolated therapeutic immune cell comprising a modified T cell receptor (TCR) or TCR complex of the invention.
[0119] In some embodiments, the immune cell is a T cell. In other embodiments, the immune cell is a NK cell.
[0120] In another aspect, the present invention provides an isolated polynucleotide comprising a nucleotide sequence encoding at least one of the TCR alpha chain, TCR beta chain, TCR gamma chain, TCR delta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta as defined above, wherein at least one exogenous functional endodomain is connected to the C-terminus of at least one of the TCR alpha chain, TCR beta chain, TCR gamma chain, TCR delta chain, CD3 epsilon, CD3 gamma, CD3 delta and CD3 zeta.
[0121] In another aspect, the present invention provides an isolated polynucleotide comprising a nucleotide sequence encoding a TCR as defined above.
[0122] In some embodiments, the isolated polynucleotide comprises a nucleotide sequence encoding a TCR α chain and / or a TCR β chain connected at its C-terminus to at least one costimulatory molecule endodomain.
[0123] In some embodiments, the polynucleotide comprises i) a nucleotide sequence encoding an alpha chain, ii) a nucleotide sequence encoding a beta chain, and iii) a nucleotide sequence encoding a self-cleaving peptide located between i) and ii) in the same reading frame. The nucleotide sequence encoding the alpha chain may be located at the 5' or 3' end of the nucleotide sequence encoding the beta chain.
[0124] In some embodiments, the isolated polynucleotide comprises a nucleotide sequence encoding a TCR gamma chain and / or a TCR delta chain connected at its C-terminus to at least one costimulatory molecule endodomain.
[0125] In some embodiments, the polynucleotide comprises i) a nucleotide sequence encoding a gamma chain, ii) a nucleotide sequence encoding a delta chain, and iii) a nucleotide sequence encoding a self-cleaving peptide located between i) and ii) in the same reading frame. The nucleotide sequence encoding the gamma chain may be located at the 5' or 3' end of the nucleotide sequence encoding the delta chain.
[0126] As used herein, the term "self-cleaving peptide" refers to a peptide that can undergo self-cleavage within a cell. For example, a self-cleaving peptide may contain a protease recognition site so that it can be recognized and specifically cleaved by a protease within a cell.
[0127] Alternatively, the self-cleaving peptide can be a 2A polypeptide. The 2A polypeptide is a type of short peptide derived from a virus, and its self-cleavage occurs during translation. When two different target proteins are linked by a 2A polypeptide and expressed in the same reading frame, the two target proteins are produced in a ratio of approximately 1:1. Common 2A polypeptides can be P2A from porcine techovirus-1, T2A from Thosea asigna virus, E2A from equine rhinitis A virus, and F2A from foot and mouth disease virus. Among these, P2A has the highest cleavage efficiency and is therefore preferred. Various functional variants of these 2A polypeptides are also known in the art and can also be used in the present invention.
[0128] In another aspect, the present invention provides an expression vector comprising a polynucleotide of the present invention operably linked to a regulatory sequence.
[0129] An "expression vector" of the present invention may be a linear nucleic acid fragment, a circular plasmid, a viral vector, or a translatable RNA (e.g., mRNA). In some preferred embodiments, the expression vector is a viral vector, such as a lentiviral vector.
[0130] The terms "regulatory sequence" and "regulatory element" are used interchangeably to refer to nucleotide sequences that are located upstream (5' non-coding sequences), in the middle or downstream (3' non-coding sequences) of a coding sequence and that affect the transcription, RNA processing or stability or translation of the associated coding sequence. Expression control elements refer to nucleotide sequences that can control the transcription, RNA processing or stability, or translation of a nucleotide sequence of interest. Regulatory sequences can include, but are not limited to, promoters, translation leader sequences, introns, enhancers, and polyadenylation recognition sequences.
[0131] As used herein, the term "operably linked" means that a regulatory element (e.g., but not limited to, a promoter sequence, a transcription termination sequence, etc.) is linked to a nucleic acid sequence (e.g., a coding sequence or an open reading frame) such that transcription of the nucleotide sequence is controlled and regulated by the transcription regulatory element. Techniques for operably linking a regulatory element region to a nucleic acid molecule are known in the art.
[0132] In another aspect, the present invention provides a method for preparing a therapeutic immune cell of the present invention, comprising introducing a polynucleotide or expression vector of the present invention into an immune cell.
[0133] The immune cells of the present invention, such as T cells or NK cells, can be obtained by a variety of non-limiting methods from a number of sources, including peripheral blood mononuclear cells, bone marrow, lymph node tissue, umbilical cord blood, thymus tissue, ascites, pleural effusion, spleen tissue, and tumors. In some embodiments, the cells can be derived from healthy donors or patients diagnosed with cancer. In some embodiments, the cells can be part of a mixed population of cells exhibiting different phenotypic profiles. For example, T cells can be obtained by isolating peripheral blood mononuclear cells (PBMCs) and then activating and expanding with specific antibodies.
[0134] In some embodiments of the present invention, the immune cells, such as T cells, are derived from the subject's own cells. As used herein, "autologous" means that the cells, cell line, or population of cells used to treat the subject are derived from the subject. In some embodiments, the immune cells, such as T cells, are derived from allogeneic cells, such as a donor that is human leukocyte antigen (HLA)-matched with the subject. The donor-derived cells can be converted to non-allo-reactive cells using standard protocols and replicated as needed to produce cells that can be administered to one or more patients.
[0135] In another aspect, the invention provides a pharmaceutical composition comprising the therapeutic immune cells of the invention and a pharma- ceutically acceptable carrier.
[0136] As used herein, "pharmaceutically acceptable carrier" includes any and all physiologically compatible solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, etc. Preferably, the carrier is suitable for intravenous, intramuscular, subcutaneous, parenteral, spinal or epidermal administration (e.g., by injection or infusion).
[0137] In another aspect, the invention provides the use of a therapeutic immune cell of the invention in the preparation of a medicament for treating a disease in a subject.
[0138] As used herein, "subject" refers to an organism suffering from or prone to suffering from a disease (e.g., cancer) that can be treated by the cells, methods, or pharmaceutical compositions of the present invention. Non-limiting examples include humans, cows, rats, mice, dogs, monkeys, goats, sheep, cattle, deer, and other non-mammals. In some preferred embodiments, the subject is a human.
[0139] In another aspect, the invention provides a method of treating a disease, such as cancer, in a subject, comprising administering to the subject an effective amount of a therapeutic immune cell or pharmaceutical composition of the invention.
[0140] As used herein, a "therapeutically effective amount" or a "therapeutically effective dose" or an "effective amount" refers to an amount of a substance, compound, material, or cell that is at least sufficient to produce a therapeutic effect after administration to a subject. Thus, it is the amount necessary to prevent, cure, ameliorate, block, or partially block the symptoms of a disease or disorder. For example, an "effective amount" of the cells or pharmaceutical composition of the present invention may preferably result in a decrease in the severity of the symptoms of the disorder, an increase in the frequency and duration of asymptomatic periods of the disorder, or prevention of injury or damage as a result of suffering from the disorder. For example, for the treatment of a tumor, an "effective amount" of the cells or pharmaceutical composition of the present invention may preferably inhibit tumor cell growth or tumor growth by at least about 10%, preferably at least about 20%, more preferably at least about 30%, more preferably at least about 40%, more preferably at least about 50%, more preferably at least about 60%, more preferably at least about 70%, and more preferably at least about 80%, compared to an untreated subject. The ability to inhibit tumor growth can be evaluated in an animal model system that may be predictive of efficacy in human tumors. Alternatively, the evaluation can be carried out by examining the ability to inhibit the growth of tumor cells, which can be determined in vitro by tests known to those skilled in the art.
[0141] In practice, the dosage level of the cells in the pharmaceutical composition of the present invention may be varied to obtain an amount of active ingredient that can effectively achieve the desired therapeutic response for a particular patient, composition and route of administration without toxicity to the patient. The selected dosage level will depend on a variety of pharmacokinetic factors, including the activity of the particular composition of the present invention applied, the route of administration, the time of administration, the excretion rate of the particular compound applied, the duration of treatment, other drugs, compounds and / or materials applied in combination with the particular composition applied, the age, sex, weight, condition, general health and medical history of the patient being treated, and similar factors known in the medical arts.
[0142] Administration of the therapeutic immune cells or pharmaceutical compositions or drugs according to the present invention may be performed in any convenient manner, such as injection, infusion, implantation or transplantation. Administration of the cells or compositions described herein may be intravenous, intralymphatic, intradermal, intratumoral, intramedullary, intramuscular or intraperitoneal. In one embodiment, the cells or compositions of the present invention are preferably administered by intravenous injection.
[0143] In various embodiments of the present invention, the disease is, for example, cancer, and examples of such cancers include lung cancer, ovarian cancer, colon cancer, rectal cancer, melanoma, kidney cancer, bladder cancer, breast cancer, liver cancer, lymphoma, hematological malignancies, head and neck cancer, glioma, gastric cancer, nasopharyngeal cancer, laryngeal cancer, cervical cancer, uterine body tumors, osteosarcoma, bone cancer, pancreatic cancer, skin cancer, prostate cancer, uterine cancer, anal cancer, testicular cancer, fallopian tube cancer, endometrial cancer, vaginal cancer, vulvar cancer, Hodgkin's disease, non-Hodgkin's lymphoma, esophageal cancer, small intestine cancer, endocrine system cancer, thyroid cancer, parathyroid cancer, adrenal cancer, soft tissue sarcoma, and the like. cancer, urethral cancer, penile cancer, chronic or acute leukemia (including acute myeloid leukemia, chronic myeloid leukemia, acute lymphocytic leukemia, chronic lymphocytic leukemia), solid tumors of childhood, lymphocytic lymphoma, bladder cancer, kidney or ureter cancer, renal pelvis cancer, central nervous system (CNS) tumors, primary CNS lymphoma, tumor angiogenesis, spinal cord tumor, brain stem glioma, pituitary adenoma, Kaposi's sarcoma, epidermoid carcinoma, squamous cell carcinoma, T-cell lymphoma, environmentally induced cancer (including asbestos induced cancer), and combinations thereof.
[0144] In various embodiments of the present invention, the disease is, for example, a pathogen infection, examples of pathogens include, but are not limited to, respiratory syncytial virus, Bacillus anthracis, human immunodeficiency virus, and the like.
[0145] In various embodiments of the present invention, the disease is, for example, a cardiovascular disease, diabetes, neurological disease, post-transplant rejection, and the like. EXAMPLES
[0146] Example 1 Improvement of STAR 1. Design of wild-type T cell receptors and their constant domain mutant STAR molecules 1.1 STAR Prototype Design Secretory antibodies (antibodies, Abs) or B cell receptors (BCRs) produced by B cells have great similarity to T cell receptors (TCRs) in terms of gene structure, protein structure and spatial conformation. Both antibodies and TCRs consist of variable and constant regions, where the variable regions play a role in antigen recognition and binding, and the constant region domains play a role in structural interaction and signal transduction. By replacing the variable regions of the TCR α and β chains (or the TCR γ and δ chains) with the heavy chain variable region (VH) and light chain variable region (VL) of an antibody, an artificially synthesized chimeric molecule called synthetic T cell receptor and antibody receptor (STAR / WT-STAR) can be constructed with its structure shown in Figure 1 (left).
[0147] A STAR molecule has two chains, the first obtained by fusing an antigen recognition sequence (e.g. an antibody heavy chain variable region) with the constant region (C α) of the T cell receptor alpha chain (TCR α) and the second obtained by fusing an antigen recognition sequence (e.g. an antibody light chain variable region) with the constant region (C β) of the T cell receptor beta chain (TCR β). The antigen recognition domains (such as VH, VL or scFv) and the constant domains (constant domains of TCR alpha, beta, gamma and delta) in the constructs can be arranged and combined to form a variety of constructs with different composition but similar functions.
[0148] After being expressed in T cells, the first and second chains of the STAR molecule bind to endogenous CD3εδ, CD3γε and CD3ζ chains in the endoplasmic reticulum to form an eight-subunit complex, which is present on the surface of the cell membrane in the form of a complex. The immunoreceptor tyrosine-based activation motif (ITAM) is a signaling motif in TCR molecules with its conserved sequence of YxxL / V. The endodomains of CD3ε, δ, γ and ε chains contain one ITAM sequence, and the endodomain of CD3ζ chain contains three ITAM sequences, so the complete STAR complex has a total of 10 ITAM sequences. When the antigen recognition sequence of the STAR receptor binds to its specific antigen, the intracellular ITAM sequence is successively phosphorylated, which then activates downstream signaling pathways and activates transcription factors such as NF-κβ, NFAT and AP-1 to initiate T cell activation and produce effector functions. Previous studies by the present inventors have shown that STAR can activate T cells better than conventional chimeric antigen receptor CARs, and background activation in the absence of antigen stimulation is significantly reduced, thus having significant advantages (see China Invention Patent Application No. 201810898720.2). However, further improvements to STAR are still desired.
[0149] 1.2. Design of mutated STARs (mut-STARs) and transmembrane- and endodomain-modified STARs (ub-STARs) The STAR prototype design used humanized TCR α / β chain (or TCR γ and δ chain) constant region sequences (wild type human TCR α constant region, SEQ ID NO: 1; wild type human TCR β constant region, SEQ ID NO: 2). The constant region sequences of human, primate and mouse TCR α / β chains (mouse TCRaC-WT, SEQ ID NO: 3; mouse TCRbC-WT, SEQ ID NO: 4) are highly conserved and also have the same key amino acid sequences, so they can be substituted for each other.
[0150] After being transferred into T cells, STAR molecules mismatch with the endogenous TCR of T cells through the constant region. On the one hand, this mismatch problem reduces the efficiency of correct pairing of STAR molecules and weakens their function, and on the other hand, it increases the possibility of unknown specificity caused by mismatch and increases security risk. To solve this problem, we replaced the constant region of STAR molecules with mouse sequences to enhance the function of STAR molecules after being transferred into human T cells. To further optimize the design of STAR molecules, we performed cysteine mutations in STAR molecules to introduce intermolecular disulfide bonds, thereby strengthening the mutual pairing between the two chains of STAR molecules and reducing the mismatch with endogenous TCR. Specifically, in the TCR α chain constant region, the threonine (T) at position 48 was mutated to a cysteine (C) (mouse TCRaC-Cys, SEQ ID NO: 5), and in the TCR β chain constant region, the serine (S) at position 56 was mutated to a cysteine (C) (mouse TCRbC-Cys, SEQ ID NO: 6). The two newly added cysteines form disulfide bonds between the two chains of STAR, thereby reducing the mismatch between the two chains of STAR with the endogenous TCR chain, helping the STAR molecule to form a more stable complex, thereby obtaining better function. Furthermore, to further optimize the design of the STAR molecule, the inventors made hydrophobic amino acid substitutions to the transmembrane domain of the STAR molecule to increase the stability of the STAR molecule and help it to perform a more sustained function. Specifically, three amino acid mutations were made at amino acid positions 111-119 of the transmembrane domain of the TCR α chain constant region, with the serine (S) at position 112 being mutated to leucine (L), the methionine (M) at position 114 being mutated to isoleucine (I), and the glycine (G) at position 115 being mutated to serine (V). The entire amino acid sequence of this region was changed from LSVMGLRIL to LLVIVLRIL, and this modification was designated mouse TCRaC-TM9, producing the constant region sequence of SEQ ID NO:7.This design increases the hydrophobicity of the transmembrane domain, counteracting the instability caused by the positive charge carried by the TCR transmembrane domain, making the STAR molecule more stable on the cell membrane and therefore better functional in its structure shown in Figure 1 (middle).
[0151] After TCR binds to antigen and activation is completed, lysines in the endodomain and transmembrane domain of TCR molecule undergo ubiquitin modification through a series of ubiquitination reactions by ubiquitin-activating enzymes, ubiquitin-conjugating enzymes and ubiquitin ligases ubiquitinate, thereby generating T cell endocytosis and resulting in endocytosis of TCR molecules into cells for further degradation by lysosomes, thus reducing the concentration of TCR molecules on the surface of the T cell membrane and resulting in a continuous reduction in the effect of T cell activation. Amino acids in the transmembrane domains or endodomains of the α and β chains in mut-STAR molecules were modified by the inventors, including mutating lysines in the endodomain of the α chain constant region and the transmembrane domain of the β chain constant region of STAR molecules to arginines, generating the constant region sequence of mouse TCRαC-Arg mut (SEQ ID NO: 8) and the constant region sequence of mouse TCRβC-Arg mut (SEQ ID NO: 9), respectively, to reduce the endocytosis of STAR molecules caused by lysine ubiquitination. This design reduces the ubiquitination probability of the transmembrane and endodomains of the STAR molecule, thus reducing the endocytosis of the STAR molecule, making it more stable on the cell membrane and allowing it to function better, with the structure shown in Figure 1 (right).
[0152] 2. Design of wild-type and mutant STAR molecules containing costimulatory receptor endodomains In order to improve the in vivo proliferation capacity, effective survival time and ability of mut-STAR cells to infiltrate the tumor microenvironment and efficiently kill target cells, new structures have been designed by the inventors, in which the mut-STAR complexes have been modified and the enhanced mut-STAR cells can be tailored as needed to improve TCR-T clinical responses and achieve sustained curative effects.
[0153] 2.1. Design of mut-STAR molecules (co-STARs) containing costimulatory molecule receptor endodomains TCR is a special marker on the surface of all T cells and can be divided into αβTCR and γδTCR, whose corresponding T cells are αβT cells and γδT cells, respectively. αβ-STAR and γδ-STAR have been modified by the inventors with costimulatory signals to improve the performance of αβT cells and γδT cells, respectively.
[0154] The TCR of αβT cells consists of the TCRα and TCRβ chains, which account for 90%-95% of all T cells. The αβTCR consists of a variable region and a constant region, where the variable region has a wide diversity and is responsible for antigen recognition and binding, while the constant region domain is responsible for structural interactions and signal transduction. To enhance the toxicity and proliferation persistence of T cells, according to the present invention, the endodomain sequence of a humanized costimulatory receptor is introduced at the C-terminus of the αβ-STAR constant region (Figure 2) and the effect on STAR T cell function is tested. The STAR constant regions of the present invention include the unmodified WT-STAR constant region, the cys-STAR constant region containing an additional intermolecular disulfide bond, the murine hm-STAR constant region, and the mut-STAR combining the three modifications described in subsection 1. The costimulatory signaling structure comprises the intracellular signaling domains of CD40, OX40, ICOS, CD28, 4-1BB or CD27, with the sequences of SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14 and SEQ ID NO: 15, respectively. The costimulatory endodomain can be connected to the C-terminus of the TCR alpha or beta chain, or to both the TCR alpha and beta chains (co-STAR). Furthermore, the costimulatory endodomain can be linked to the C-terminus of the TCR constant region, or to the C-terminus of a TCR constant region in which the endodomain sequence of the TCR molecule has been deleted (endodomain-deleted TCR alpha chain constant region containing both cysteine substitutions and hydrophobic region modifications (mouse TCRaC-del mut, SEQ ID NO: 26), endodomain-deleted TCR beta chain constant region containing cysteine substitutions (mouse TCR beta C-del mut, SEQ ID NO: 27)) (co-linker-STAR, Figure 3), either directly or via a linker G4S / (G4S)n (G4S linker sequences are SEQ ID NO: 16, SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO: 24, SEQ ID NO: 25, respectively).
[0155] The TCR of γδ T cells consists of TCRγ and TCRδ chains, and γδ T cells can be divided into three subgroups based on the type of TCRδ chain: γδ1, γδ2, and γδ3, and different subgroups have different distribution in the human body. γδ T cells recognize antigens in an MHC-restricted manner, which plays an important role in pathogen and tumor surveillance. Experiments have shown that CD28 or 4-1BB and similar costimulatory signals play an important role in the activation and proliferation of γδ T cells. The endodomain sequences of human costimulatory molecule receptors were introduced by the inventors into the C-terminus of TCRγ and TCRδ, respectively (Figure 2, right) to improve the performance of γδ T cells.
[0156] 2.2. Design of CD3 molecules containing costimulatory molecule receptor endodomains (co-CD3-STAR) The CD3 subunits contain γ, δ, ε and ζ chains and form a T cell receptor complex with the TCR molecule that transmits signals from the ectodomain to the endodomain to regulate the state of the cell and its response to stimuli. To engineer enhanced TCR T cells and improve the tumor killing, proliferation and survival of T cells in vivo, the CD3 molecule was modified by the inventors by introducing human costimulatory molecule receptor endodomains at the C-terminus of the CD3 γ (SEQ ID NO: 28), δ (SEQ ID NO: 29), ε (SEQ ID NO: 30) and ζ (SEQ ID NO: 31) chains ( FIG. 4 ). The modified CD3 molecule was expressed in mut-STAR T cells to improve its function.
[0157] 2.3. Design of CD3 molecules containing the stimulatory domain of the cytokine receptor (cytokine-STAR, CK-STAR) Cytokines play an important role in the proliferation, anti-tumor and differentiation of T cells. Various cytokines combine with their respective receptors to transmit signals from ectodomain to endodomain, so as to regulate the state of cells and their response to stimuli. Furthermore, research has shown that downstream molecule STAT5 (SEQ ID NO: 35) is activated by a cascade reaction at IL-2 receptor endodomain, thus enhancing the transcription of T cell proliferation-related molecules and enhancing the proliferation ability of CAR-T cells. To engineer enhanced STAR-T cells and improve the tumor killing, proliferation and survival time of T cells in vivo, STAR molecules were modified by the inventors by linking intracellular signalling domains of human cytokine receptors (e.g. IL-2β receptor endodomain IL2Rb, SEQ ID NO: 32; IL-7α receptor endodomain, SEQ ID NO: 33; IL-21 receptor endodomain, SEQ ID NO: 34 etc.) to the C-terminus of the TCR α or β chain or both α and β chains, or by further linking a STAT5 activating moiety to the IL-2β or IL-7Rα receptor endodomain via G4S (IL-2RbQ, SEQ ID NO: 36; IL-7RbQ, SEQ ID NO: 37) (Figure 5).
[0158] 3. Construction of vectors for wild-type and mutant STAR molecules containing costimulatory receptor endodomains 3.1 Vector sources Vectors used in the present invention, such as viral vectors, plasmid vectors, etc., are purchased from commercial sources or synthesized, and the full length sequences of these vectors are available and the specific cleavage sites are known.
[0159] 3.2. Fragment sources The TCR referred to in the present invention can be any functional TCR, including WT-STAR, mut-STAR, ub-STAR, co-STAR, co-linker-STAR, CK-STAR, co-CD3-STAR, etc., used in the present invention. The gene fragments used in the present invention, such as the variable region of TCR, the constant region of TCR, the endodomain of the costimulatory molecule receptor, the intracellular signaling region of the cytokine receptor, the tag sequence, the linker, etc., were all synthesized by commercial companies. These gene fragments were linked by PCR.
[0160] In this example, optimization of the TCR complex was verified using STAR comprising an ScFv as set forth in SEQ ID NO: 38 (derived from a CD20 targeting antibody, OFA) and / or an ScFv as set forth in SEQ ID NO: 39 (derived from a CD19 targeting antibody, FMC63) and compared to a blank control group Mock expressing only the RFP protein as set forth in SEQ ID NO: 40 (red fluorescent protein, RFP).
[0161] Vector construction The lentiviral vector used here was pHAGE-EF1α-IRES-RFP, where the linear vector was obtained by restriction enzymes Not I / Nhe I, the gene fragment was obtained by synthesis and PCR, and the complete vector was obtained by homologous recombination.
[0162] 4. Cell Line Construction: 4.1 Construction of plasmid pHAGE-luciferase-GFP As a lentiviral vector, pHAGE can stably insert target genes into the genome of target cells, which is an important method for constructing stable cell lines. Luciferase is a kind of enzyme with catalytic activity that can catalyze the chemical autoluminescence of the substrate to stably express luciferase in target cells, and can indicate the number of target cells after adding the substrate, thus reflecting the effect of functional cells on the target cells. The pHAGE-EF1A vector with restriction endonuclease NotI / ClaI cutting sites was cut by the two enzymes, and the luciferase and GFP sequences were obtained by NCBI, and the luciferase gene and the GFP gene were combined by Overlap PCR by the commercially available Ruiboxingke to synthesize the fragment, and then the luciferase-GFP fragment was ligated into the pHAGE vector by homologous recombination.
[0163] 4.2 Construction of luciferase-bearing target cell lines We successfully constructed a lentiviral vector with luciferase and GFP, packed the lentivirus in Lenti-X-293T, concentrated the lentiviral solution with PEG8000, measured the virus titer by gradient dilution, and then infected the lymphoma cell line Raji. 72 hours after infection, observed the presence or absence of GFP-positive cells under a fluorescent microscope, then separated the GFP-positive cells with a flow sorter, and selected monoclonal cells for library construction and storage. At the same time, luciferase substrate was used to incubate with target cells, and the expression and detection level of luciferase were detected to determine the expression level.
[0164] 4.3 Construction of TCRα-β knockout Jurkat cell line Based on the structure and sequence characteristics of TCR, guide sequences were designed in the constant regions of the α and β chains to construct a TCRα-β-Jurkat cell line. The exon sequences of the constant regions of the TCRα and β chains were obtained from NCBI, and the exon 1 sequences of the constant regions of the TCRα and β chains were submitted to the tools.genome-engineering.org website for the design of guide sequences. Based on the results, oligo sequences were synthesized, and then sgRNA-LentiCRISPR lentiviral vectors (purchased from Aidi gene) were constructed. The guide sequence of the α chain was linked to LentiCRISPR-puro, and the guide sequence of the β chain was linked to LentiCRISPR-BSD.
[0165] sgRNA-LentiCRISPR lentivirus: HEK-293T packaging was plated in a 10 cm dish in advance, and when the cells grew to 80%-90%, the transfection system was added to HEK-293T and the cells were returned to a 37°C incubator for culture. This time was counted as 0 hours, and fresh 10% FBS-DMEM was added 12 hours after transfection. Virus was harvested 48 and 72 hours after transfection. The culture medium containing the virus was centrifuged, filtered, mixed with PEG8000, and placed at 4°C for more than 12 hours, then centrifuged at 3500 rpm for 30 minutes, the supernatant was discarded, and then resuspended and precipitated in an appropriate volume of medium. Frozen at -80°C or used directly.
[0166] Infection and screening of Jurkat T cells and identification of monoclonal cell lines: Jurkat T cells were inoculated into 12 or 24 well plates, followed by addition of α-chain and β-chain sgRNA-LentiCRISPR viruses simultaneously in appropriate volumes, as well as polybrene (added at a ratio of 1:1000 based on the total volume) and mixing thoroughly. Centrifugation infection was performed at 1000 rpm, 32°C for 90 min. The result was placed in a 37°C incubator, counting as 0 hours. After 10-12 hours, the liquid was replaced, and after 48 hours, puromycin was added to the appropriate final concentration, and after another 48 hours of treatment, all the cells in the non-infected control group were killed, as indicated. The surviving cells were aspirated, centrifuged, and cultured in complete medium to obtain the TCRα-β-Jurkat cell bank. Single cells from the TCRα-β-Jurkat cell bank were sorted into 96 well plates by flow sorter Aria, and after 2 weeks of culture, the expanded monoclones were aspirated for amplification culture. Monoclonal cell lines were identified with TCR α- and β-chain antibodies, respectively, and cell lines lacking both chains were expanded to obtain endogenous TCR knockout Jurkat-T cell lines.
[0167] 5. Constructs of viral packaging systems for transducing T cells 5.1 Lentiviral systems and packaging methods (different generations) Lentix-293T cells were inoculated at 5×105 / mL into a 10 cm culture dish and cultured in a 5% CO2, 37°C incubator, and transfection was performed when the cell density reached approximately 80% (observed under a microscope). The three plasmids were mixed with 500 μL of serum-free DMEM according to a 1:2:3 ratio of PMD2.G:PSPAX:transfer plasmid. 54 μL of PEI-Max and 500 uL of serum-free DMEM were mixed uniformly and left at room temperature for 5 minutes (volume and mass ratio of PEI-Max to plasmids 3:1). The PEI-max mixture was slowly added to the plasmid mixture, gently blown in, mixed uniformly, and then left at room temperature for 15 minutes. The final mixture was slowly added to the culture medium, mixed uniformly, and then returned to the incubator for 12 h to 16 h for another culture, then replaced with 6% FBS DMEM medium for another culture, and the virus solution was collected at 48 h and 72 h.
[0168] 5.2 Viral titration Jurkat-C5 cells were seeded at 1.5×105 cells / mL into flat-bottom 96-well plates, and 100uL of 1640 medium containing 10% FBS and 0.2uL of 1000x polybrene was added to each well. Virus dilutions were performed using 10-fold dilutions of 1640 complete medium, and the virus dose in the first well was 100uL if determined as virus stock solution, and 1uL if determined as concentrated solution. The diluted cells were added to the virus wells at 100uL / well, mixed at 32°C, centrifuged at 1500rpm for 90 minutes, and cultured in a 37°C incubator with 5% CO2 for 72 hours. The cells from the flat-bottom 96-well plates were aspirated into round-bottom 96-well plates, centrifuged at 4°C and 1800rpm for 5 minutes, and the supernatant was discarded. 200uL of 1×PBS was added, followed by centrifugation at 4°C and 1800rpm for 5 minutes, and the supernatant was discarded. 200uL of 4% tissue fixative was added, and the resulting solution was shielded from light and measured by flow cytometry. The infection efficiency was measured by flow cytometry, and wells with an efficacy rate of 2-30% were selected when calculating the titer according to the formula: titer (TU / mL) = 1.5 x 104 x positive rate / virus amount (μL) x 1000. Viruses of the following plasmids were packaged by the above method.pHAGE-EF1A-IRES-RFP, WT-STAR, mut-STAR, co-WT-STAR(αβ-4-1BB-WT, αβ-CD27-WT, αβ-CD28-WT, αβ-ICOS-WT, αβ-OX40-WT, αβ-OX40 -WT), co-STAR (αβ-4-1BB, αβ-CD27, αβ-CD28, αβ-ICOS, αβ-OX40, αβ-OX40), co-CD3-STAR (CD3δ-4-1BB, CD3δ-CD28, CD3δ-ICOS, CD3δ-O X40, CD3ε-4-1BB, CD3ε-CD28, CD3ε-ICOS, CD3ε-OX40, CD3γ-OX40, CD3γ-ICOS, CD3γ-OX40, CD3ζ-41BB, CD3ζ-CD28, CD3ζ-ICOS, CD3ζ-O X40), co-linker-STAR (TCRβ-del-OX40, TCRα-del-G4S-OX40, TCRα-del-G4S-OX40, TCRβ-del-(G4S)3-OX40, TCRβ-del-(G4S)7-OX40), C K-STAR (β-IL-2Rb STAR, β-IL-2RbQ STAR, α-IL-2RbQ STAR, α-IL-7RA STAR, α-IL-7RAQ STAR, α-IL-21R STAR), etc.
[0169] 6. Establishment of T cell culture and infection methods 6.1 Jurkat T cell line culture Jurkat T cell line was cultured in RPMI1640 medium containing 10% FBS with a culture density of 3*105 / ml and up to 3*106 / ml, and subcultured every 1-2 days. After cell counting, the required number of cells was taken, adjusted to the above density by supplementing the culture medium, and placed in a CO2 incubator for culture.
[0170] 6.2 Jurkat T cell line infection The cells were counted, 1x106 / ml cells were harvested, centrifuged, replaced with liquid, resuspended in 1mL RPMI1640 medium containing 10% FBS, added to a 24-well plate that also contained an appropriate amount of virus solution, centrifuged at 1500 rpm for 90 min, and placed in a CO2 incubator for culture. 12 hours after infection, the liquid was completely changed with fresh RPMI1640 medium containing 10% FBS, and the positive rate was detected after 72 hours.
[0171] 6.3 Human primary T cell culture Primary T cells were isolated by the Ficoil method and cultured in X-VIVO medium containing 10% FBS and 100 IU / mL IL-2, the initial culture density was 1×106 / mL, and then added to CD3- and Retronectin r-fibronectin (final concentration 5ug / ml each) precoated well plates. The density of the later culture was from 5×105 / mL to 3×106 / mL, and subculture was performed every 1-2 days.
[0172] 6.4 Human primary T cell infection After 48 hours of culture, primary T cells were added with virus solution at MOI=20, centrifuged at 1500 rpm for 90 minutes, and then placed in a CO2 incubator for culture. After 24 hours of infection, the cells were supplemented with X-VIVO medium containing 10% FBS and 100 IU / mL IL-2, the wells were rotated, and after 72 hours, the infection efficiency was detected by tag protein or antibody.
[0173] 6.5. Methods for detecting infection efficiency After 72 h of infection, cells were uniformly infused, counted, harvested at 5 × 105 / ml, centrifuged, then the supernatant was discarded, the staining solution used was PBS + 2% FBS + 2 mM EDTA, the corresponding antibody was added for 30 min incubation, then PBS was added twice for washing, and the detection was performed on computer.
[0174] 7. In vitro functional assays of WT-STAR receptor and its mutant mut-STAR T cells 7.1. In Vitro Co-Culture Methods of T Cells and Target Cells The target cells Raji-luciferase, RajiCD19KO-luciferase, RajiCD20KO-luciferase and primary T cells were floating cells, and for co-incubation, the corresponding number of cells were collected, mixed with target cell medium, and centrifuged for culture. The specific steps were as follows: Primary T cells were infected with packaged and purified WT-STAR and mut-STAR T viruses, and one day before co-culture, the infection efficiency was detected by flow cytometry, and the ratio of effector cells to target cells was determined, generally used at a ratio of 1:1, and the total number of T cells was calculated according to the infection efficiency, and the general use of target cells was 1 x 105 / well (96-well plate).
[0175] 7.2. Stimulation of T cells by target antigen The target antigen of the present invention is generally a cell surface protein that can be directly used in T cell activation to detect T cell function. Positive T cells were usually added at 1×105 cells / well, centrifuged, and activated for 24 hours, after which T cells or target cells were harvested to detect T cell function.
[0176] 7.3. Validation of T cell killing function: Luciferase assay T cells were co-cultured with target cells for 24 hours, then the cell suspension was gently blown evenly, 150 μL of cell suspension was taken per well, added to a white 96-well plate, centrifuged at 1500 rpm / min for 5 minutes, the supernatant was taken, and cell lysate was added for lysis at room temperature for 15 minutes, then centrifuged at 4000 rpm / min for 15 minutes at 4 °C, then two parallel wells were taken for each well to take the supernatant, luciferase substrate (firefly luciferase assay reagent) was added, and then the gain value was fixed at 100 and detected by a multifunctional microplate reader to obtain the chemiluminescence value. Cell killing calculation: Cell killing efficiency = 100% - (effector cells per well - target cell value / control cells per well - target cell value).
[0177] 7.4. The detection results of T cell killing function test by luciferase assay, as shown in Figure 6 and Table 1, showed that after mut-STAR T cells targeting CD19 and CD20 were killed by Raji-luciferase, RajiCD19KO-luciferase and RajiCD20KO-luciferase, the mutant mut-STAR T cells showed stronger T cell tumor killing ability, and the survival rates of the residual tumors were 2.41%, 13.94% and 24.40%, respectively, which were significantly better than that of WT-STAR by 45.73%, 77.00% and 76.16%, respectively, indicating that the mutant mut-STAR had a more significant tumor killing effect. [Table 1]
[0178] 8. Effects of costimulatory endodomains attached to the C-terminus of both the TCR α and TCR β chains, or to the C-terminus of the TCR α or TCR β chain, on the function of STAR-T cells 8.1. In Vitro Co-Culture Methods of T Cells and Target Cells The target cells Raji-luciferase and primary T cells were floating cells, and for co-incubation, the corresponding number of cells were collected and mixed with target cell culture medium, and then centrifuged for culture. The specific steps were as follows: primary T cells were infected with packaged and purified WT-STAR and mut-STAR T viruses, and one day before co-culture, the infection efficiency was detected by flow cytometry, and the ratio of effector cells to target cells was determined, and the co-incubation was usually performed at a ratio of 8:1, 4:1, 2:1, 1:1, 1:2, 1:4 and 1:8, and the difference in the time of co-incubation was also usually detected at 6 hours, 12 hours, 24 hours, 36 hours and 48 hours. To detect the proliferation of co-STAR T cells, target cells Raji-luciferase were incubated with primary T cells for 7 days to observe the changes in cell proliferation number and IL-2 secretion, and then the positive T cells were selected by flow cytometry and rest cultured for 2 days without antigen stimulation, and then co-cultured with target cells again for 24 hours to detect T cell killing, and the typical amount of target cells used was 1×105 / well (96-well plate).
[0179] 8.2. Methods for stimulating T cells with target antigens The target antigen of the present invention is generally a cell surface protein, which can be directly used to activate T cells and detect the function of T cells, in particular, the target antigen is added to positive T cells, usually 1×105 / well, and centrifuged and activated for 24 hours to recover the cell suspension or culture supernatant for detecting the T cell function, or activated for 6 hours, 12 hours, 24 hours, 36 hours, 48 hours or 7 days to detect the killing function of T cells.
[0180] 8.3. Validation of T cell killing function: Luciferase assay T cells were co-cultured with target cells for different times, then the cell suspension was gently blown evenly, 150 μL of cell suspension per well was taken, added to a white 96-well plate, centrifuged at 1500 rpm / min for 5 min, the supernatant was taken, and cell lysate was added for lysis at room temperature for 15 min, then centrifuged at 4000 rpm / min for 15 min at 4 °C, then two parallel wells were taken for each well to take the supernatant, luciferase substrate (firefly luciferase assay reagent) was added, and then the gain value was fixed at 100 and detected by a multifunctional microplate reader to obtain the chemiluminescence value. Cell killing calculation: Cell killing efficiency = 100% - (effector cells per well - target cell value / control cells per well - target cell value).
[0181] The detection results of T cell killing function test by luciferase assay showed that mut-STAR with costimulatory endodomains linked to the C-terminus of both TCR α and β chains showed similar tumor killing effect at different E:T ratios of T cells and target cells, and there was no significant difference in the residual tumor viability at different E:T ratios, as shown in Figure 7 and Table 2. However, regarding the detection results of tumor killing at different time points, as shown in Figure 8 and Table 3, mut-STAR with OX40 endodomains linked to the C-terminus of both TCR α and β chains (αβ-OX40) and mut-STAR with 48 hours incubation with Raji-luciferase showed similar tumor killing effect of about 24% and 19%, respectively, which were significantly better than mut-STAR with other costimulatory endodomains linked to the C-terminus of both TCR α and β chains (αβ-41BB, αβ-CD27, αβ-CD28, αβ-ICOS). From the above results, it was found that the endodomain of the costimulatory molecule OX40 linked to the C-terminus of both the TCR α chain and the β chain did not affect the killing effect of mut-STAR. In addition, from the above results, only mut-STAR with the OX40 endodomain linked to the C-terminus of the TCR α chain (α-OX40) or β chain (β-OX40) was detected on the killing function of T cells by luciferase assay, and the detection results showed that, at different E:T ratios or 24-hour co-incubation with tumor cells co-incubated with T cells, α-OX40 and β-OX40 did not show significant differences from α-β-OX40, as shown in Figures 9 and 10 and Tables 4 and 5. From the above killing results, there was no significant difference between mut-STAR, in which the endodomain of the costimulatory molecule OX40 was linked to the C-terminus of both the TCR α and β chains (αβ-OX40), and mut-STAR (α-OX40), in which the endodomain of the costimulatory molecule OX40 was linked to the C-terminus of the TCR α chain, or mut-STAR (β-OX40), in which the endodomain of the costimulatory molecule OX40 was linked to the C-terminus of the TCR β chain, alone, but their tumor killing ability was significantly superior to that of mut-STAR.
[0182] 8.4. Analysis of cytokine secretion by T cells: ELISA During T cell activation, a number of cytokines, such as TNF-α, IFN-γ and IL-2, were released to help T cells kill target cells or promote their own proliferation. After T cells were stimulated by target cells or antigens, the T cells were collected, centrifuged, and the supernatant was taken. The TNF-α, IFN-γ and IL-2 ELISA kits used were human IL-2 non-coated ELISA, human TNF-α non-coated ELISA and human IFN-γ non-coated ELISA (No. 88-7025, No. 88-7346, No. 88-7316, respectively). The specific steps were as follows: 10X coating buffer was diluted to 1X with ddH2O, coating antibody (250X) was added, the wells were mixed, and added to a 96-well plate at 100μL / well. After sealing with plastic wrap and leaving it at 4℃ overnight, it was washed three times with 1x PBST (1x PBS with 0.05% Tween20) at 260μL / well each time, and 5x ELISA / ELISPOT Diluent was diluted to 1x with ddH2O, then added to the 96-well plate at 200μL / well and left at room temperature for 1 hour. It was washed once with PBST, diluted according to the standard curve (ranges of 2-250, 4-500, and 4-500, respectively), and diluted 20-50 times with 1xDiluent. The sample diluted according to the standard curve was added at 100 microliters / well, two parallel wells were taken, incubated at room temperature for 2 hours, PBST was used for washing three times, then detection antibody diluted in 1xDiluent was added, after 1 hour incubation, PBST was used for washing three times, then HRP diluted in 1xDiluent was added, after 30 minutes incubation, the solution was washed six times, TMB was added for color development with a color development time of less than 15 minutes, 2N H2SO4 was added for termination, and the light absorption at 450 nm was detected.
[0183] The ELISA results showed that after T cells were co-incubated with target cells for 24 hours, IL-2 secretion of mut-STAR (αβ-OX40), in which the OX40 endodomain was linked to the C-terminus of both the TCR α and β chains, was about 10000pg / ml, which was significantly higher than that of STAR with other structures, and IL-2 secretion of mut-STAR, αβ-41BB, αβ-CD27, αβ-CD28 and αβ-ICOS was about 7700pg / ml, 6450pg / ml, 6690pg / ml, 6000pg / ml and 6050pg / ml, respectively. Regarding the secretion of TNFα and IFN-γ, αβ-OX40 also showed similar results to mut-STAR, while the other structures showed different reductions, as shown in Figure 11 and Table 6. ELISA results showed that IL-2 secretion by mut-STAR (αβ-OX40), in which the endodomain of the costimulatory molecule OX40 was linked to the C-terminus of both the TCR α and β chains, was significantly higher than that by mut-STAR.
[0184] 8.5. Detection of changes in T cell proliferation: Enumeration by flow cytometry During T cell activation, numerous cytokines were released to help T cells kill target cells or promote their own proliferation, and the most obvious occurrence of T cell proliferation was the significant change in the number of T cells. T cells were incubated with target cells for 7 days, then centrifuged and resuspended in 200uL with PBS, and the number of positive T cells was counted by flow cytometry. Change in T cell proliferation: proliferation fold=number of positive T cells after 7 days / initial number of positive T cells added.
[0185] After sorting, mut-STAR-T cells with various structures were co-cultured with Raji-luciferase cells at an E:T ratio of 1:3, counting as day 0, and then the cells were collected for flow analysis on days 1 and 7, respectively. Among them, the medium used was 1640 complete medium without IL-2, the initial number of TCR T cells was 1×105 cells, the samples at each time point were incubated independently, and the remaining co-incubated samples were half-replaced with liquid the next day and replenished with target cells. The cells used for flow analysis were stained with anti-human CD3 antibody in advance, and their specific volumes were collected and recorded when analyzed by machine, and the number and percentage of T cells in the system were known by conversion. As shown in Figure 12 and Table 7, from the proliferation fold curve of the absolute number of mut-STAR cells, mut-STAR (αβ-OX40), in which the OX40 endodomain was connected to the C-terminus of both TCR α and β chains, showed better activation and proliferation after recognizing the target cell epitope, which was significantly higher than mut-STAR. The proliferation of mut-STAR with OX40 endodomain attached to the C-terminus of only TCR α chain (α-OX40) or β chain (β-OX40) is shown in Figure 13 and Table 8. After 7 days, the T cell proliferation of mut-STAR with OX40 endodomain attached to the C-terminus of only TCR α chain (α-OX40) was 11.75 times, while other structures such as mut-STAR, β-OX40 and αβ-OX40 were 2.755 times, 4.128 times and 6.744 times, respectively, and the proliferation effect of α-OX40 was significantly higher than other structures. Combining the above tumor killing results, ELISA results and T cell proliferation results, mut-STAR with only OX40 endodomain (α-OX40) attached to the C-terminus of TCR α chain showed enhanced proliferation and tumor killing ability than other structures.
[0186] From the above results, it was found that the best proliferation effect was obtained by linking the costimulatory molecule OX40 to the TCR-α chain without affecting the killing effect of T cells. Therefore, mut-STAR with intracellular domains of different costimulatory molecules was linked in tandem to the TCRα chain. Different effector-to-target ratios of T cells and target cells showed that the killing effect of the intracellular domain of the costimulatory molecule OX40 linked to mut-STAR was better than that of STAR linked to other costimulatory domains. At E:T ratios of 1:2 and 1:4, the effect of mut-STAR T cells linked to the endodomain of the costimulatory molecule OX40 (α-OX40) was similar to that of αβ-OX40 and superior to that of mut-STAR T cells linked to other costimulatory molecules. The results are shown in Figure 14 and Table 9. Based on the above killing results, the tumoricidal and proliferation potency obtained by mut-STAR (α-OX40), in which the OX40 endodomain was linked to the TCR α chain, was significantly superior to that of mut-STAR.
[0187] [Table 2] [Table 3] [Table 4] [Table 5] [Table 6] [Table 7] [Table 8] [Table 9]
[0188] 9. Effect of costimulatory structures linked to different CD3 chains (co-CD3-STAR) on the function of STAR T cells 9.1. In Vitro Co-Culture Methods of T Cells and Target Cells The target cells Raji-luciferase and primary T cells were floating cells, and for co-incubation, the corresponding number of cells were collected, mixed with target cell culture medium, and then centrifuged for culture. The specific steps were as follows: Primary T cells were infected with packaged and purified WT-STAR and mut-STAR T viruses, and one day before co-culture, the infection efficiency was detected by flow cytometry to determine the ratio of effector cells to target cells, and co-incubation was usually performed at a ratio of 1:1 or 2:1, and the target cells Raji-luciferase and primary T cells were co-incubated for 7 days to observe the change in cell proliferation number. The total number of T cells was calculated based on the infection efficiency, and the general usage of target cells was 1 x 105 cells / well (96-well plate).
[0189] 9.2. Stimulation of T cells by target antigen The target antigen of the present invention is generally a cell surface protein that can be directly used in T cell activation to detect T cell function. Positive T cells were usually added at 1×105 / well, centrifuged, activated for 24 hours, and the cell suspension or culture supernatant was collected to detect T cell function.
[0190] 9.3. Validation of T cell killing function: Luciferase assay T cells were co-cultured with target cells for different times, then the cell suspension was gently blown evenly, 150 μL of cell suspension per well was taken, added to a white 96-well plate, centrifuged at 1500 rpm / min for 5 min, the supernatant was taken, and cell lysate was added for lysis at room temperature for 15 min, then centrifuged at 4000 rpm / min for 15 min at 4 °C, then two parallel wells were taken for each well to take the supernatant, luciferase substrate (firefly luciferase assay reagent) was added, and then the gain value was fixed at 100 and detected by a multifunctional microplate reader to obtain the chemiluminescence value. Cell killing calculation: Cell killing efficiency = 100% - (effector cells per well - target cell value / control cells per well - target cell value).
[0191] The detection results of T cell killing function test by luciferase assay showed that when the costimulatory endodomain was connected to the C-terminus of CD3δ or CD3γ or CD3ε or CD3ζ chain and co-expressed on mut-STAR T, the results at 1:1 E:T ratio of different T cells to target cells showed that all co-CD3-STAR showed no better target cell killing effect than αβ-OX40, but showed similar tumor killing effect compared with mut-STAR, CD3δ-OX40, CD3ζ-41BB, CD3ζ-CD28, CD3ζ-ICOS, CD3ζ-OX40, and the residual tumor viability of co-CD3-STAR was not significantly different at 1:1 E:T ratio, as shown in Figure 15 and Table 10. Based on the above results, by linking the costimulatory endodomain to the C-terminus of different CD3 chains, the tumor-killing effect of mut-STAR was not significantly improved, whereas the effect of mut-STAR with a costimulatory endodomain linked to the C-terminus of the CD3ζ chain was not significantly reduced.
[0192] 9.4 Detection of changes in T cell proliferation: Enumeration by flow cytometry During T cell activation, numerous cytokines were released to help T cells kill target cells or promote their own proliferation, and the most obvious occurrence of T cell proliferation was the significant change in the number of T cells. T cells were incubated with target cells for 7 days, then centrifuged and resuspended in 200uL with PBS, and the number of positive T cells was counted by flow cytometry. Change in T cell proliferation: proliferation fold=number of positive T cells after 7 days / initial number of positive T cells added.
[0193] After sorting, mut-STAR-T cells with various structures were co-cultured with Raji-luciferase cells at an E:T ratio of 1:3, counting as day 0, and then the cells were collected for flow analysis on days 1 and 7, respectively. Among them, the medium used was 1640 complete medium without IL-2, the initial number of TCR T cells was 1×105 cells, the samples at each time point were incubated independently, and the remaining co-incubated samples were half-replaced with liquid the next day and replenished with target cells. The cells used for flow analysis were stained with anti-human CD3 antibody in advance, and their specific volume was collected and recorded when analyzed by machine, and the number and percentage of T cells in the system were known by conversion. As shown in Figure 16 and Table 11, the proliferation fold curves of the absolute number of mut-STAR cells show that, compared with αβ-OX40-mut-STAR, all co-CD3-STAR did not show better target cell killing effects, but CD3ε-CD28, CD3δ-OX40, CD3ζ-CD28, CD3ζ-ICOS, CD3ζ-OX40, etc. showed similar proliferation effects. Considering the results of killing detection by luciferase assay and T cell proliferation, the structures in which the costimulatory endodomain is linked to the C-terminus of CD3δ or CD3γ or CD3ε or CD3ζ chain and co-expressed on mut-STAR T did not show better tumor killing and proliferation effects compared with αβ-OX40-mut-STAR T cells.
[0194] [Table 10] [Table 11]
[0195] 10. Effect of costimulatory endodomains containing the linker G4S linked to endodomain-deleted α or β constant regions on the function of STAR T cells 10.1. In Vitro Co-Culture Methods of T Cells and Target Cells The target cells Raji-luciferase and primary T cells were floating cells, and for co-incubation, the corresponding number of cells were collected, mixed with target cell culture medium, and then centrifuged for culture. The specific steps were as follows: Primary T cells were infected with packaged and purified WT-STAR and mut-STAR T viruses, and one day before co-culture, the infection efficiency was detected by flow cytometry to determine the ratio of effector cells to target cells, and co-incubation was usually performed at a ratio of 1:1 or 2:1, and the target cells Raji-luciferase and primary T cells were co-incubated for 7 days to observe the change in cell proliferation number. The total number of T cells was calculated based on the infection efficiency, and the general usage of target cells was 1 x 105 cells / well (96-well plate).
[0196] 10.2. Stimulation of T cells by target antigen The target antigen of the present invention is generally a cell surface protein, which can be directly used to activate T cells and detect T cell function, in particular, the target antigen was added to positive T cells, usually 1×105 / well, and centrifuged and activated for 24 hours to collect the cell suspension or culture supernatant for detecting T cell function.
[0197] 10.3. Validation of T cell killing function: Luciferase assay T cells were co-cultured with target cells for different times, then the cell suspension was gently blown evenly, 150 μL of cell suspension per well was collected into a white 96-well plate, centrifuged at 1500 rpm / min for 5 min, the supernatant was collected, and cell lysate was added for lysis at room temperature for 15 min, then centrifuged at 4000 rpm / min for 15 min at 4 °C, then two parallel wells were collected for each well to collect the supernatant, luciferase substrate (firefly luciferase assay reagent) was added, and then the gain value was fixed at 100 and detected by a multifunctional microplate reader to obtain the chemiluminescence value. Cell killing calculation: Cell killing efficiency = 100% - (effector cells per well - target cell value / control cells per well - target cell value).
[0198] The detection results of T cell killing function test by luciferase assay showed that costimulatory endodomains with different lengths of G4S linkers were linked to endodomain-deleted α or β constant regions, and the results at 1:1 E:T ratio of T cells to target cells showed that when the linker was linked to α constant region endodomain, α-del-OX40, α-OX40, α-del-G4S-OX40, α-del-(G4S)3-OX40 and α-β-ox40 showed similar killing effect, which was better than α-del-(G4S)7-OX40 and α-del-(G4S)10-OX40, and when the linker was linked to β constant region endodomain, β-del-OX40, β-ox40, β-del-(G4S)3-OX40 and α-β-ox40 showed similar killing effect, but the longer the linker, the weaker the T cell killing effect. The conjugation of OX40 (α-del-OX40 or β-del-OX40) after the removal of the constant region endodomain showed little difference in effect compared to the absence of such removal, but after the addition of a linker (the number of linkers was 3 or less), the effect of α-del-(G4S)1-3-OX40 or β-del-(G4S)1-3-OX40 was better than that of α-del-OX40 or β-del-OX40. When comparing the effect of linking a linker to an α constant region endodomain with the effect of linking a linker to a β constant region endodomain, the effect of linking a linker to an α constant region endodomain was better than that of linking a linker to a β constant region endodomain. However, as shown in Figures 17 and 18 and Tables 12 and 13, there was no significant difference in the residual tumor viability at an E:T ratio of 2:1. Based on the above results, mut-STAR with a costimulatory endodomain containing a G4S linker linked to an endodomain-deleted α or β constant region did not affect the tumor-killing effect of mut-STAR, and the effect when linked to an α constant region endodomain was better than that when linked to a β constant region endodomain, but the longer the linker length, the weaker the tumor-killing effect instead.
[0199] 10.4. Analysis of cytokine secretion by T cells: ELISA During T cell activation, a number of cytokines, such as TNF-α, IFN-γ and IL-2, were released to help T cells kill target cells or promote their own proliferation. After T cells were stimulated by target cells or antigens, the T cells were collected, centrifuged, and the supernatant was taken. The TNF-α, IFN-γ and IL-2 ELISA kits used were human IL-2 non-coated ELISA, human TNF-α non-coated ELISA and human IFN-γ non-coated ELISA (No. 88-7025, No. 88-7346, No. 88-7316, respectively). The specific steps were as follows: 10X coating buffer was diluted to 1X with ddH2O, coating antibody (250X) was added, the wells were mixed, and added to a 96-well plate at 100μL / well. After sealing with plastic wrap and leaving it at 4℃ overnight, it was washed three times with 1x PBST (also called washing buffer, 1x PBS with 0.05% Tween20) at 260μL / well each time, and 5x ELISA / ELISPOT Diluent was diluted to 1x with ddH2O, then added to the 96-well plate at 200μL / well and left at room temperature for 1 hour. It was washed once with PBST, diluted according to the standard curve (ranges of 2-250, 4-500, and 4-500, respectively), and diluted 20-50 times with 1xDiluent. The standard curve samples were added at 100 microliters / well, two parallel wells were taken, incubated at room temperature for 2 hours, PBST was used for washing three times, then detection antibody diluted in 1xDiluent was added, after 1 hour incubation, PBST was used for washing three times, then HRP diluted in 1xDiluent was added, after 30 minutes incubation, the solution was washed six times, TMB was added for color development with a color development time of less than 15 minutes, 2N H2SO4 was added for termination, and the light absorption at 450 nm was detected.
[0200] The ELISA results showed that after T cells were co-incubated with target cells for 24 hours, the IL-2 and IFN-γ secretions of mut-STAR with the structure of α-del-(G4S)7-OX40OX40 were significantly lower than that of mut-STAR, while the IL-2 secretions of other structures β-del-OX40, α-del-OX40, α-del-G4S-OX40 and α-del-(G4S)3-OX40 were similar to that of mut-STAR, respectively. As shown in Figures 19 and 20 and Tables 14 and 15, only β-del-OX40 showed IFN-γ secretion similar to that of mut-STAR, while the IFN-γ secretions of the other structures showed different decreases. According to the ELISA results, in the structures having α or β constant region endodomains, the deletion of the α chain endodomain affected IFN-γ secretion but not IL-2 secretion, and the deletion of the β chain endodomain had no effect on either IL-2 or IFN-γ secretion. At the same time, after the α chain endodomain was deleted, it was linked to the OX40 endodomain using a linker, and in the case of a linker with a length of less than 7, it had no effect on IL-2 secretion but reduced IFN-γ secretion.
[0201] 10.5. Detection of changes in T cell differentiation: flow cytometric analysis During T cell activation, numerous cytokines and other chemokines were released, and signals were transmitted into the nucleus via cytokine or chemokine receptors to regulate T cell differentiation. T cells differentiate from early T cells (naive) to central memory T cells (Tcm), effector memory T cells (Tem), and finally to effector T cells (Teff). However, the proliferation and persistence of T cells in vivo is influenced by the number of T cells differentiated from central memory T cells (Tcm) to effector memory T cells (Tem). Memory T cells can be classified into stem cell T cells, central memory T cells, and effector memory T cells. The differentiation ratio of central memory T cells affects the sustained killing effect of T cells in vivo. The ratio of early T cells to effector T cells affects the tumor killing effect and persistence of T cells in vivo. The expression of CD45RA and CCR7 on the surface of T cells can be detected by flow cytometry to know the differentiation of T cells. T cells were incubated with target cells for 7 days, centrifuged, stained with anti-human-CD45RA-Percp-cy5.5 and anti-human-CCR7-APC flow antibodies for 30 min, centrifuged again, washed with PBS, fixed with 4% paraformaldehyde solution, and T cell differentiation was detected by flow cytometry.
[0202] From the flow cytometry results, as shown in Figure 21 and Table 16, when the costimulatory endodomain containing the G4S linker was linked to the structure in which the endodomain of the α or β constant region was deleted, the resulting α-del-(G4S)3-OX40 showed significant differentiation of central memory T cells, but the structure in which OX40 was directly linked to the endodomain of the α (α-del-OX40) or β (β-del-OX40) constant region also promoted the differentiation of central memory T cells. At the same time, the number of effector T cells of mut-STAR T cells with various modified structures was significantly lower than that of mut-STAR, but the percentage of naive T cells was significantly higher (28.3%) than that of mut-STAR, respectively, as shown in Figure 22 and Table 17. Combining tumor killing results, ELISA results and flow cytometric detection of cell differentiation, mut-STAR with deleted α or β constant region endodomains connected to OX40 endodomains via (G4S)3 linkers can significantly improve differentiation of memory populations of T cells without affecting tumor killing efficacy and IL-2 secretion.
[0203] [Table 12] [Table 13] [Table 14] [Table 15] [Table 16] [Table 17]
[0204] 11. Effect of TCR endocytosis-associated lysine modification to arginine in the transmembrane domain or endodomain on the function of mutant STAR-T cells 11.1. In Vitro Co-Culture Methods of T Cells and Target Cells The target cells Raji-luciferase and primary T cells were floating cells, and for co-incubation, the corresponding number of cells were collected, mixed with target cell culture medium, and then centrifuged for culture. The specific steps were as follows: Primary T cells were infected with packaged and purified WT-STAR and mut-STAR T viruses, and one day before co-culture, the infection efficiency was detected by flow cytometry to determine the ratio of effector cells to target cells, and co-incubation was usually performed at a ratio of 1:1 or 2:1, and the target cells Raji-luciferase and primary T cells were co-incubated for 7 days to observe the change in cell proliferation number. The total number of T cells was calculated based on the infection efficiency, and the general usage of target cells was 1 x 105 cells / well (96-well plate).
[0205] 11.2. Stimulation of T cells by target antigen The targets of the present invention are generally cell surface proteins, which can be directly used to activate T cells and detect T cell function, in particular, positive T cells, usually 1×105 / well, were added to the target antigen, centrifuged and activated for 24 hours, and the cell suspension or culture supernatant was collected for detecting T cell function.
[0206] 11.3. Validation of T cell killing function: Luciferase assay T cells were co-cultured with target cells for different times, then the cell suspension was gently blown evenly, 150 μL of cell suspension per well was collected into a white 96-well plate, centrifuged at 1500 rpm / min for 5 min, the supernatant was collected, and cell lysate was added for lysis at room temperature for 15 min, then centrifuged at 4000 rpm / min for 15 min at 4 °C, then two parallel wells were collected for each well to collect the supernatant, luciferase substrate (firefly luciferase assay reagent) was added, and then the gain value was fixed at 100 and detected by a multifunctional microplate reader to obtain the chemiluminescence value. Cell killing calculation: Cell killing efficiency = 100% - (effector cells per well - target cell value / control cells per well - target cell value).
[0207] The detection results of T cell killing function test by luciferase assay showed that the tumor cell killing effect of ub-STAR, a mut-STAR with TCR endocytosis-associated lysine modified to arginine in the transmembrane domain or endodomain, was significantly lower than that of mut-STAR T cells at an E:T ratio of 2:1 or 1:1 of T cells to target cells, as shown in Figure 23 and Table 18.
[0208] 11.4. Analysis of cytokine secretion by T cells: ELISA During T cell activation, a number of cytokines, such as TNF-α, IFN-γ and IL-2, were released to help T cells kill target cells or promote their own proliferation. After T cells were stimulated by target cells or antigens, the T cells were collected, centrifuged, and the supernatant was taken. The IFN-γ and IL-2 ELISA kits used were human IL-2 non-coated ELISA, human IFN-γ non-coated ELISA (No. 88-7025, No. 88-7346, No. 88-7316, respectively). The specific steps were as follows: 10X coating buffer was diluted to 1X with ddH2O, coating antibody (250X) was added, the wells were mixed, and added to a 96-well plate at 100μL / well. After sealing with plastic wrap and leaving it at 4℃ overnight, it was washed three times with 1x PBST (also called washing buffer, 1x PBS with 0.05% Tween20) at 260μL / well each time, and 5x ELISA / ELISPOT Diluent was diluted to 1x with ddH2O, then added to the 96-well plate at 200μL / well and left at room temperature for 1 hour. It was washed once with PBST, diluted according to the standard curve (ranges of 2-250, 4-500, and 4-500, respectively), and diluted 20-50 times with 1xDiluent. The sample diluted according to the standard curve was added at 100 microliters / well, two parallel wells were taken, incubated at room temperature for 2 hours, PBST was used for washing three times, then detection antibody diluted in 1xDiluent was added, after 1 hour incubation, PBST was used for washing three times, then HRP diluted in 1xDiluent was added, after 30 minutes incubation, the solution was washed six times, TMB was added for color development with a color development time of less than 15 minutes, 2N H2SO4 was added for termination, and the light absorption at 450 nm was detected.
[0209] The ELISA results, as shown in Figures 24 and 25 and Tables 19 and 20, showed that IL-2 and IFN-γ secretion by ub-STAR, a mut-STAR with TCR endocytosis-associated lysine modified to arginine in the transmembrane or endodomain, co-incubated with target cells for 24 hours at an E:T ratio of 2:1, 1:1 or 1:2 of T cells to target cells, was significantly lower than IL-2 and IFN-γ secretion by ub-STAR of mut-STAR T cells.
[0210] 11.5. Detection of changes in T cell differentiation: flow cytometric analysis During T cell activation, numerous cytokines and other chemokines are released, and signals are transmitted into the nucleus via cytokine or chemokine receptors to regulate T cell differentiation, and the proliferation and persistence of T cells in vivo was influenced by the number of T cells differentiated into memory T cells. Memory T cells can be classified into stem cell T cells, central memory T cells and effector memory T cells. The expression of CD45RA and CCR7 on the surface of T cells can be detected by flow cytometry to know the differentiation of T cells. T cells were incubated with target cells for 7 days, centrifuged, stained with anti-human-CD45RA-Percp-cy5.5 and anti-human-CCR7-APC flow antibodies for 30 minutes, centrifuged again, washed with PBS, fixed with 4% paraformaldehyde solution, and the differentiation of T cells was detected by flow cytometry.
[0211] Flow cytometry results showed that there was no significant difference in either central memory T cell differentiation or the ratio of naive to effector T cells between mut-STAR and ub-STAR (mut-STAR with TCR endocytosis-associated lysine modified to arginine in the transmembrane domain or endodomain), indicating that TCR endocytosis-associated lysine modification to arginine in the transmembrane domain or endodomain did not significantly affect mut-STAR T cell differentiation, as shown in Figures 26 and 27 and Tables 21 and 22. Combining tumor killing results, ELISA results and flow cytometry tests of cell differentiation, ub-STAR, i.e., mut-STAR with TCR endocytosis-associated lysine modified to arginine in the transmembrane domain or endodomain, did not have an effective promoting effect on mut-STAR modification.
[0212] [Table 18] [Table 19] [Table 20] [Table 21] [Table 22]
[0213] 12. Effects of mutant STARs with different cytokine receptor stimulatory domains attached to α or β constant region endodomains on the function of STAR T cells 12.1. In Vitro Co-Culture Methods of T Cells and Target Cells The target cells Raji-luciferase and primary T cells were floating cells, and for co-incubation, the corresponding number of cells were collected, mixed with target cell culture medium, and then centrifuged for culture. The specific steps were as follows: Primary T cells were infected with packaged and purified WT-STAR and mut-STAR T viruses, and one day before co-culture, the infection efficiency was detected by flow cytometry to determine the ratio of effector cells to target cells, and co-incubation was usually performed at a ratio of 1:1 or 2:1, and the target cells Raji-luciferase and primary T cells were co-incubated for 7 days to observe the change in cell proliferation number. The total number of T cells was calculated based on the infection efficiency, and the general usage of target cells was 1 x 105 cells / well (96-well plate).
[0214] 12.2. Stimulation of T cells by target antigen The targets of the present invention are generally cell surface proteins, which can be directly used to activate T cells and detect T cell function, in particular, positive T cells, usually 1×105 / well, were added to the target antigen, centrifuged and activated for 24 hours, and the cell suspension or culture supernatant was collected for detecting T cell function.
[0215] 12.3. Validation of T cell killing function: Luciferase assay T cells were co-cultured with target cells for different times, then the cell suspension was gently blown evenly, 150 μL of cell suspension per well was taken, added to a white 96-well plate, centrifuged at 1500 rpm / min for 5 min, the supernatant was taken, and cell lysate was added for lysis at room temperature for 15 min, then centrifuged at 4000 rpm / min for 15 min at 4 °C, then two parallel wells were taken for each well to take the supernatant, luciferase substrate (firefly luciferase assay reagent) was added, and then the gain value was fixed at 100 and detected by a multifunctional microplate reader to obtain the chemiluminescence value. Cell killing calculation: Cell killing efficiency = 100% - (effector cells per well - target cell value / control cells per well - target cell value).
[0216] The detection results of T cell killing function test by luciferase assay, as shown in Figure 28 and Table 23, when different cytokine receptor stimulatory domains were connected to the α or β domain endodomain of mutant STAR, at an E:T ratio of T cells to target cells of 2:1, β-IL-2Rb, α-IL-2Rb, α-IL-7RA, α-IL21R all showed similar killing effect to that of mut-STAR, while β-IL2RbQ, α-IL2RbQ and α-IL7RAQ showed significantly lower tumor killing effect than that of mut-STAR. Furthermore, the killing effects of mutant STARs linked to different cytokine receptor stimulatory domains were detected and compared with that of α-del-(G4S)3-OX40-STAR. As shown in Figure 29 and Table 24, at E:T ratios of 2:1 and 1:1, the killing effect of α-IL7RA was slightly lower than that of α-del-(G4S)3-OX40-STAR, while the killing effects of STARs linked to other cytokine receptor structures were significantly lower than that of α-del-(G4S)3-OX40-STAR.
[0217] 12.4. Analysis of Cytokine Secretion by T Cells: ELISA During T cell activation, a number of cytokines, such as TNF-α, IFN-γ and IL-2, were released to help T cells kill target cells or promote their own proliferation. After T cells were stimulated by target cells or antigens, the T cells were collected, centrifuged, and the supernatant was taken. The IFN-γ and IL-2 ELISA kits used were human IL-2 non-coated ELISA, human IFN-γ non-coated ELISA (No. 88-7025, No. 88-7346, No. 88-7316, respectively). The specific steps were as follows: 10X coating buffer was diluted to 1X with ddH2O, coating antibody (250X) was added, the wells were mixed, and added to a 96-well plate at 100μL / well. After sealing with plastic wrap and leaving it at 4℃ overnight, it was washed three times with 1x PBST (also called washing buffer, 1x PBS with 0.05% Tween20) at 260μL / well each time, and 5x ELISA / ELISPOT Diluent was diluted to 1x with ddH2O, then added to the 96-well plate at 200μL / well and left at room temperature for 1 hour. It was washed once with PBST, diluted according to the standard curve (ranges of 2-250, 4-500, and 4-500, respectively), and diluted 20-50 times with 1xDiluent. The sample diluted according to the standard curve was added at 100 microliters / well, two parallel wells were taken, incubated at room temperature for 2 hours, PBST was used for washing three times, then detection antibody diluted in 1xDiluent was added, after 1 hour incubation, PBST was used for washing three times, then HRP diluted in 1xDiluent was added, after 30 minutes incubation, the solution was washed six times, TMB was added for color development with a color development time of less than 15 minutes, 2N H2SO4 was added for termination, and the light absorption at 450 nm was detected.
[0218] The ELISA results showed that when T cells were incubated with target cells for 24 hours at an E:T ratio of 1:1 or 1:2, IL-2 secretion of β-IL-2Rb was significantly higher than that of mut-STAR, whereas α-IL-2Rb, β-IL-2RbQ and α-IL-7RAQ showed similar IL-2 secretion, but IL-2 secretion of α-IL-2RbQ was significantly lower than that of mut-STAR, as shown in Figure 30 and Table 25. IFN-γ secretion of β-IL-2Rb was significantly higher than that of mut-STAR, whereas IFN-γ secretion of other constructs was significantly lower than that of mut-STAR, as shown in Figure 31 and Table 26.
[0219] 12.5. Detection of changes in T cell differentiation: flow cytometric analysis During T cell activation, numerous cytokines and other chemokines are released, and signals are transmitted into the nucleus via cytokine or chemokine receptors to regulate T cell differentiation, and the proliferation and persistence of T cells in vivo was influenced by the number of T cells differentiated into memory T cells. Memory T cells can be classified into stem cell T cells, central memory T cells and effector memory T cells. The expression of CD45RA and CCR7 on the surface of T cells can be detected by flow cytometry to know the differentiation of T cells. T cells were incubated with target cells for 7 days, centrifuged, stained with anti-human-CD45RA-Percp-cy5.5 and anti-human-CCR7-APC flow antibodies for 30 minutes, centrifuged again, washed with PBS, fixed with 4% paraformaldehyde solution, and the differentiation of T cells was detected by flow cytometry.
[0220] Mutant STARs with different cytokine receptor stimulatory regions linked to α or β constant region endodomains showed various differences in the differentiation of central memory T cells and the ratio of naive to effector T cells, where α-IL-2Rb, β-IL-2Rb, α-IL-2RbQ, β-IL-2RbQ showed no significant difference compared to mut-STAR, whereas α-IL-7RA, α-IL-7RAQ and α-IL-21R showed no significant difference compared to mut-STAR, as shown in Figures 32 and 33, and Tables 27 and 28. Based on the above results, the differentiation of mutated STAR T cells was significantly affected when different cytokine receptor stimulatory regions were connected to the α or β constant region endodomains of mutant STARs.
[0221] [Table 23] [Table 24] [Table 25] [Table 26] [Table 27] [Table 28]
[0222] 13. Evaluation of in vivo expansion and antitumor capacity of various STAR-like T cells 1) Experimental Animal Models In this experiment, NSG immunodeficient mice were used as a model. The mouse genotype was NOD-Prkdcem26Il2rgem26 / Nju, which lacked T cells, B cells, and NK cells, and was also deficient in macrophages and dendritic cells. NSG mice are the most complete immunodeficient mouse strain at present, and can be widely used in preclinical research of T cell therapy because they do not reject transplanted tumors and T cells. In this experiment, 6-8 week-old female NSG mice were used, and the weight difference of mice in each batch was controlled within 2 g. The mice were kept in independent ventilated cages in a specific pathogen-free (SPF) barrier and were given a normal diet and drinking water with a slightly acidic pH to prevent pathogen contamination.
[0223] 2) Construction of tumor models In constructing the hematological tumor model, human Burkitt's lymphoma cell line Raji cells were used for xenograft transplantation. Raji cells are a cell line expressing luciferase gene by lentiviral vector, and the development and changes of Raji tumors were monitored in real time by fluorescein chemiluminescence and in vivo imaging in mice. In this model, different doses (generally about 1-3 × 106 cells) of Raji-luciferase cells were mixed with matrix gel and inoculated into 6-8 week-old female NSG mice by intraperitoneal injection. After 3 days, the mice were intraperitoneally injected with fluorescein potassium salt solution, and the fluorescent signal of the tumor cells was detected by in vivo imaging. Raji cells grew rapidly in mice, producing solid tumors in the peritoneal cavity and causing symptoms such as weight loss in mice. In the absence of therapeutic treatment, the Raji tumor mass led to death in mice in about 40 days.
[0224] 3) Animal experiment procedures All animal procedures were performed after approval of the Animal Protocol.
[0225] 4) Means for monitoring tumor growth In this experiment, in vivo fluorescence imaging was used by basically injecting tumor cells with luciferase gene into animals for colony formation. Fluorescein potassium salt solution, which releases a specific wavelength of light as a substrate in the presence of enzyme, was injected into the abdominal cavity of mice, and the fluorescence signal of tumor cells was detected in vivo by in vivo imaging. Quantitative analysis of the fluorescence signal was performed, and a heat map was drawn to quantitatively reflect tumor growth.
[0226] 5) Methods for detecting T cell activity and expansion in animals The survival and proliferation of T cells in vivo are directly related to their final antitumor effect. To detect the activity and proliferation of T cells in animals, blood samples were collected from mice periodically to analyze the percentage, cell status and cell grouping of STAR-T cells in peripheral blood. The specific operations were as follows. Every 3-4 days, mice were anesthetized with isoflurane, and about 100uL of blood was collected from the mouse's orbit. The blood samples were subjected to anticoagulation, plasma collection and red blood cell cleavage, and then the remaining cells were subjected to flow staining to detect the ratio of CD4 to CD8 and molecules such as CCR7, CD45RA, PD-1, LAG-3 and TIM-3, which were used for T cell subset analysis and cell status analysis. At the same time, the absolute number of STAR-T cells in the peripheral blood of mice was obtained by flow cytometry or digital PCR. In addition, at the end of the experiment, the mice can be dissected to detect the percentage of T cells in other immune organs of the mice.
[0227] 6) Methods for assessing T cell safety in animals To evaluate the toxicity and safety of STAR-T cells, we investigated whether side effects were caused by STAR-T cells in experimental animals. By observing the behavioral state of the mice, analyzing the pathology of the mice, and analyzing sections taken from the vital organs of the mice, we could evaluate whether the reinjected T cells had significant toxicity. At the same time, by analyzing the infiltration of T cells in the non-tumor tissues of the mice, we could determine whether the T cells have an off-target killing effect on the non-tumor tissues of the mice. Furthermore, by detecting the levels of cytokines such as IL-2, IFN-γ, TNFα, or IL-6 in the mouse blood, we could determine whether the T cells can cause a systemic cytokine storm.
[0228] 7) Methods for evaluating T cell tumor infiltration The ability of T cells to infiltrate tumors is the core ability of T cells to challenge solid tumors. To detect the infiltration ability of T cells, tumor tissues can be first separated, followed by digestion and pulverization to obtain single cells, which are subjected to flow staining to detect the proportion of T cells in tumor tissues. At the same time, tumor cells, tumor stromal cells and immune cells in tumor suspensions can be further separated by density gradient centrifugation (e.g., Percoll gradient, Ficoll gradient, etc.) to obtain purified tumor-infiltrating T cells, and the characteristics of purified tumor-infiltrating T cells, such as chemokine receptor expression, T cell exhaustion, etc., can be analyzed in detail by sequencing and other methods.
[0229] 8) Results According to the above in vitro function results, 5×105 Raji-luciferase tumor cells were inoculated into 6-8 week old NCG female mice via tail vein to establish mouse tumor models (Figure 34) to further evaluate the in vivo function of expressing αβ OX40-STAR or mut-STAR T cells. On day 6, tumor-bearing mice were divided into 4 groups: A: PBS-injected group (injected with equal volume of PBS); B: mut-STAR T cell-injected group; C: αβ OX40-STAR T cell-injected group; D: BBz-CAR-T cell-injected group. Mice in groups B / C / D were injected with 5×105 TCR T cells via tail vein, and mice in group A were injected with equal volume of 200 μL PBS. In the following weeks, tumor cell growth, in vivo TCR T cell proliferation and mice survival were monitored. As shown in Figures 34 and 35, compared with the control group, the αβOX40-STAR T and mut-STAR T cells constructed in this example can significantly extend the survival time of tumor-bearing mice, but after the tumor disappeared and tumor cells were reinjected into the mice at different time points, αβOX40-STAR T and mut-STAR T can properly eliminate tumor cells, the effect of αβOX40-STAR T is better than that of mut-STAR T, and the survival time of mice in the αβOX40-STAR T group was higher than that of the STAR-T group and CAR-T group. Also, as shown in Figure 36, compared with the STAR-T group, the in vivo proliferation effect of αβOX40-STAR T cells is better than that of STAR-T cells, and in the case of tumor reinjection, there was a slight proliferation in αβOX40-STAR T cells, but not in STAR-T cells. From the results of the above animal experiments, it can be found that the in vitro and in vivo effects of the αβOX40-STAR structure are better than those of mut-STAR.
[0230] According to the above in vitro function results, 2×106 Raji-luciferase tumor cells were intraperitoneally inoculated into 6-8 week old NCG female mice to establish a mouse tumor model (Figure 37) to further evaluate the in vivo function of mut-STAR T cells expressing different effects. On the 8th day, the tumor-bearing mice were divided into 7 groups: A: PBS-injected group (injected with equal volume of PBS); B: dual-car; C: dual-STAR-T cell-injected group; D: αβOX40-STAR T cell-injected group; E: α-del-OX40-STAR-T cell-injected group; F: α-del-(G4S)3-OX40-STAR-T cell-injected group; and G: α-IL7R-STAR-T cell-injected group. Mice in groups B / C / D / E / F / G were injected with 2×106 TCR T cells via tail vein, and mice in group A were injected with equal volume of 200μL PBS. In the following weeks, tumor cell growth, in vivo STAR-T cell proliferation and mouse survival were monitored. As shown in Figure 37, the α-del-(G4S)3-OX40-STAR-T cells constructed in this example could significantly kill tumor cells in tumor-bearing mice compared with the control group, and the effect of α-del-(G4S)3-OX40-STAR-T cells was superior to other groups. From the results of animal experiments, it can be seen that the in vitro and in vivo effects of α-del-(G4S)3-OX40-STAR structure are better than mut-STAR.
[0231] Example 2 Improved TCR 1. Design of T cell receptors and mutant T cell receptors with constant region mutations After being transferred into T cells, exogenous TCR molecules may mismatch with the endogenous TCR of T cells to form mismatches, which on the one hand may reduce the efficiency of correct pairing of TCR molecules and weaken the function of TCR T cells, and on the other hand may result in potential off-target toxicity and increase the risk of treatment. To solve this problem, according to the present invention, the constant region of the wild-type αβTCR sequence (wtTCR, left side of Figure 38) was mutated and modified, resulting in the design of cysTCR, hmTCR and mut-ohmTCR, respectively (Figure 38).
[0232] 1.1. Design of cysTCR with intermolecular disulfide bonds in the constant region We mutated threonine (Thr) at position 48 of the TCR α chain constant region to cysteine (Cys) and serine (Ser) at position 56 of the TCR β chain constant region to cysteine (Cys). The two newly added cysteines form disulfide bonds between the two chains of the exogenous TCR (cysTCR, the second one on the left in Figure 38), thereby helping the TCR molecule form a more stable complex and thus obtain better function.
[0233] 1.2. Design of mouse hmTCR The constant region sequences of TCR α and β chains are highly conserved in different species, such as humans and mice. Research has shown that mouse TCR constant regions are less likely to form mismatches with humanized TCR constant regions, and mouse constant regions have higher affinity with human CD3 molecules, forming more stable complexes in human T cells, which can greatly improve the function of TCR T cells. Therefore, the constant region sequence of humanized TCR was replaced with the constant region sequence of mouse TCR to construct a TCR molecule with a mouse constant region, i.e., hmTCR (the second one on the right in Figure 38).
[0234] 1.3. Design of mouse mut-ohmTCR with transmembrane hydrophobic amino acid substitutions and additional intermolecular disulfide bonds To further optimize the design of the TCR molecule, the mouse constant region designed for hmTCR was codon-humanized to be compatible with the expression of the TCR molecule in human T cells. At the same time, threonine (Thr) at position 48 in the mouse TCR α chain constant region was mutated to cysteine (Cys), and serine (Ser) at position 56 in the TCR β chain constant region was mutated to cysteine (Cys) to form additional intermolecular disulfide bonds and help the TCR molecule form a more stable complex. The study also showed that changing the amino acid region from 111 to 119 in the TCR α chain transmembrane region from LSVMGLRIL to LLVIVLRIL, i.e., mutating the serine (Ser) at position 112 to leucine (Leu), the methionine (Met) at position 114 to isoleucine (Ile), and the glycine (Gly) at position 115 to valine (Val), could increase the hydrophobicity of the transmembrane region, offset the instability caused by the positive charge of the TCR transmembrane region, and make the TCR molecule more stable on the cell membrane, thus resulting in better function. Therefore, by combining these three ideas (right side of Figure 38), the Mut-ohmTCR structure was designed to improve the function of TCR T cells.
[0235] 2. Design of TCR-CD3 molecules containing costimulatory molecule receptor endodomains In order to improve the in vivo proliferation ability, effective survival time, and ability of TCR T cells to infiltrate the tumor microenvironment to efficiently kill target cells, the inventors designed a new structure by modifying the TCR-CD3 complex, thereby enabling enhanced regulation of TCR-CD3 cells as needed to improve the clinical response of TCR-T and achieve a sustained curative effect.
[0236] 2.1. Design of TCR molecules containing costimulatory molecule receptor endodomains (armored-TCR) TCR is a special marker on the surface of all T cells and is divided into αβTCR and γδTCR with corresponding T cells: αβT cells and γδT cells. αβTCR and γδTCR were modified by the inventors with costimulatory signals to improve the performance of αβT cells and γδT cells, respectively.
[0237] The TCR of αβT cells consists of TCRα and TCRβ chains, which accounted for 90%-95% of all T cells. αβTCR consists of a variable region and a constant region, where the variable region has a wide diversity and plays a role in antigen recognition and binding, while the constant region domain plays a role in structural interaction and signal transduction. To enhance the toxicity and proliferation persistence of T cells, according to the present invention, a humanized costimulatory molecule receptor endodomain sequence was introduced into the C-terminus of the αβTCR constant region (left, Figure 39) and its effect on the function of STAR T cells was studied. The αβTCR constant region of the present invention included the unmodified wtTCR constant region, the cysTCR constant region containing an additional intermolecular disulfide bond, the mouse hmTCR constant region, and the mut-STAR with a combination of the three modifications described in subsection 1. The costimulatory signaling structure included the intracellular signaling domains of CD40 / OX40 / ICOS / CD28 / 4-1BB / CD27. The costimulatory endodomain could be attached to the C-terminus of the TCR α or β chain, or to both the TCR α and β chains. Furthermore, the costimulatory molecule domain could be attached to the C-terminus of the TCR constant region, either directly or via G4S / (G4S)n, or to the C-terminus of the TCR constant region after deleting the endodomain sequence of the TCR molecule.
[0238] The TCR of γδ T cells consists of TCRγ and TCRδ chains, and γδ T cells can be divided into three subgroups based on the type of TCRδ chain: γδ1, γδ2, and γδ3, and different subgroups have different distribution in the human body. γδ T cells recognize non-peptide antigens in an MHC-restricted manner and play an important role in pathogen and tumor surveillance. Experiments have shown that CD28 / 4-1BB and similar costimulatory signals play an important role in the activation and proliferation of γδ T cells. The endodomain sequences of human costimulatory molecule receptors were introduced by the inventors into the C-terminus of TCRγ and TCRδ, respectively (right, Figure 39) to improve the performance of γδ T cells.
[0239] 2.2. Design of CD3 molecules containing costimulatory molecule receptor endodomains (armored-CD3) CD3 subunits include γ, δ, ε and ζ chains, and formed T cell receptor complexes with TCR molecules that transmit signals from ectodomain to endodomain to regulate cell status and response to stimuli. To engineer enhanced TCR T cells and improve the tumor killing ability, proliferation ability and survival time of T cells in vivo, the inventors modified the CD3 molecule by introducing human co-stimulatory molecule receptor endodomains at the C-terminus of CD3 γ, δ, ε and ζ chains ( FIG. 40 ), and expressed the modified CD3 molecule in TCR T cells to improve the function of TCR T cells.
[0240] 3. Construction of plasmids for TCRs containing costimulatory molecule receptor endodomains and their mutants 3.1 Plasmid sources The vectors used in the present invention, including lentiviral vectors, retroviral vectors, protein expression vectors, phagocytes, lentiviral packaging plasmids, retroviral packaging plasmids, etc., were purchased from or synthesized by commercial companies, and the full-length sequences of these vectors were obtained and the specific cleavage sites were known.
[0241] 3.2. Fragment sources The TCR referred to in the present invention can be any functional TCR, including TCR-E 141, TCR-E 315, and TCR-E 316 used in the present invention. The gene fragments used in the present invention include the variable regions of TCR-E141 / TCR-E315 / TCR-E316, wtTCR constant region, cysTCR constant region, hmTCR constant region, mut-ohmTCR constant region, costimulatory receptor endodomain, tag sequence, and linker, etc., all of which were synthesized by commercial companies. One or more target fragments were linked by PCR to synthesize primers to obtain the corresponding functional sequence.
[0242] 3.3 Vector construction The lentiviral vector used here was pHAGE-EF1α-IRES-RFP, where the linear vector was obtained by restriction enzymes Not I / Nhe I, the gene fragment was obtained by synthesis and PCR, and the complete vector was obtained by homologous recombination.
[0243] 4. Construction of human primary TCR T cell and target cell lines 4.1 Lentiviral packaging The aseptically extracted target gene plasmid and packaging plasmids psPAX2 and pMD2.G were mixed with PEI (polyethyleneimine, PEI) in a fixed ratio to transfect Lenti-X293T cells, and the cell culture supernatant was collected at 48 hours and 72 hours, then filtered and mixed with PEG8000 (polyethylene glycol, PEG), followed by standing overnight at 4°C. The supernatant was discarded, then centrifuged at 3500 rpm for 30 minutes, and then resuspended in a small amount of medium to obtain concentrated lentivirus.
[0244] 4.2 Isolation, culture and lentiviral infection of human primary T cells Peripheral blood mononuclear cells (PBMCs) were isolated from the peripheral blood of volunteers using Ficoll, a solution used for the separation of lymphocytes, and then T cells were obtained from the PBMCs by negative selection according to the product instructions of the EasySep human T cell isolation kit (stem cell technologies), which were resuspended at 1×106 cells / mL using 1640 complete medium containing IL-2 (100 U / mL), and then activated on culture dishes coated with anti-CD3 / CD28 antibodies. After 48 hours of activation, T cells were infected with TCR or / and CD3-loaded viral particles using the lentivirus system by centrifugation at 1500 rpm for 2 hours at 32°C, then removed and incubated in a cell culture incubator at 37°C for 10 hours, then the infection was terminated by the addition of medium, and the cells were continuously cultured in a cell culture incubator at 37°C. Three days after infection, TCR-positive cells were sorted by flow cytometry.
[0245] 4.3 Construction of target cell lines Logarithmic growth phase Raji cells were infected with virus particles loaded with LMP2-RFP, HLA-A*1101-BSD and luciferase-GFP using lentivirus system. Drug screening and flow sorting were used to obtain Raji cells stably expressing LMP2, HLA-A*1101 and luciferase simultaneously, which were named Raji-HLA-A*1101-LMP2-luciferase cells.
[0246] 5. Effects of costimulatory signals on the function of TCR T cells with different constant regions To investigate whether costimulatory signals can improve the in vivo proliferation and enhance the tumor killing effect of TCR T cells, OX40, CD40 and ICOS endodomains were added to the C-terminus of TCR α and β chains with four different constant domains (wtE141, cysE141, hmE141, mut-ohmE141), respectively, thus creating plasmids wtE141-αβ-OX40, cysE141-αβ-OX40, hmE141, mut-ohmE141, and mut-ohmE141. 141-αβ-OX40, mut-ohmE141-αβ-CD40, cysE141-αβ-CD40, hmE141-αβ-CD40, mut-ohmE141-αβ-CD40, wtE141-αβ-ICOS, cysE141-αβ-ICOS, hmE141-αβ-ICOS, mut-ohmE141-αβ-ICOS and mut-ohmE141-αβ-ICOS were constructed. In addition, plasmids were also constructed by adding OX40, CD40 or ICOS to the C-terminus of the α and β chains of TCR-E315 and TCR-E316 with various constant regions. The virus was packaged with second generation packaging plasmids, which were then used to infect primary T cells and select positive cells. The sorted TCR T cells were co-cultured with Raji-HLA-A*1101-LMP2-luciferase cells according to the scheme in section 5, counting as day 0, and then the cells were harvested on days 1, 3, 5, 7 and 10 for flow analysis, respectively. Among them, the medium used was 1640 complete medium without IL-2, the initial number of TCR T cells was 1×105 cells, the samples at each time point were incubated independently, and the remaining co-incubated samples were half-replaced with liquid the next day and replenished with target cells. The cells used for flow analysis were stained with anti-human CD3 antibody in advance, and their specific volume was collected and recorded when analyzed by machine, and the number and percentage of T cells in the system were obtained by conversion (Figure 41A). As can be seen from the growth curve of the absolute number of E141 TCR T cells (left, Figure 41A), after recognizing the target cell epitope, the TCR T cells with OX40 receptor added to the C-terminus of the TCR constant region showed better activation and proliferation.Furthermore, the proportion of T cells and remaining target cells in the system was analyzed (right, Figure 41A), and it was found that TCR T cells supplemented with OX40 showed stronger tumor clearance ability, especially for mut-ohmE141 TCR T cells, and the costimulatory signal significantly improved the function of T cells. Furthermore, in vitro long-term co-culture of TCR-E141 supplemented with CD40 or ICOS also showed that the chimeric costimulatory signal could significantly improve cell proliferation and enhance the tumor-killing ability of T cells. Similar results were obtained when TCR was replaced with TCR-E315 (Figure 41B) and TCR-E316. According to the above experimental results, the fusion of the endodomains of costimulatory domains such as OX40, CD40 and ICOS at the C-terminus of TCR can significantly enhance the proliferation ability of TCR T cells and their ability to kill tumor cells, among which, the addition of the endodomains of the costimulatory domains to the constant region of mut-ohm TCR improved the proliferation and killing ability of the corresponding TCR T cells most significantly.
[0247] 6. Effects of different costimulatory signals on TCR T cell function To compare the performance of TCR T cells modified by different costimulatory signals, the endodomains of 4-1BB, CD28, ICOS, OX40, OX40, CD27 and CD40 molecules were added to the C-terminus of the mut-ohmE141 TCR constant region, respectively, and then the constructed mut-ohmE141-αβ-4-1BB, mut-ohmE141-αβ-CD28, mut-ohmE141-αβ-ICOS, mut-ohmE141-αβ-OX40, mut-ohmE141-αβ-CD27, mut-ohmE141-αβ-CD27, mut-ohmE141-αβ-CD40 TCR T cells were co-cultured with Raji-HLA-A*1101-LMP2-luciferase cells according to the co-culture scheme in section 5, and the number and percentage of T cells in the system were analyzed by flow cytometry. The results of the proliferation curve and the E:T ratio of the absolute number of T cells (Figure 42A) show that TCR T cells with CD40, OX40, ICOS or CD28 added to the C-terminus of the TCR constant region showed superior activation and proliferation ability and significantly improved killing function compared to mut-ohmE141-αβ-wt without costimulatory signal modification. Among them, TCR T cells with CD40 and OX40 added showed more significant activation, proliferation and tumor clearance. In addition, TCR-E315 and TCR-E316 plasmids with the C-terminus of both α and β chains connected to the costimulatory molecules described in this example were also constructed to analyze the effect of different costimulatory molecules on target cell killing by either TCR T cell. The results showed that similar results to TCR-E141 were also obtained from TCR-E315 (Figure 42B) and TCR-E316, indicating that selective chimerization of costimulatory signals at either C-terminus of functional TCR constant region could significantly increase the proliferation and killing ability of corresponding TCR T cells. Based on this, TCR T cells can be customized according to the requirements to improve the performance of TCR T cells by chimerizing costimulatory signals or other functional domains at the TCR C-terminus.
[0248] 7. Effect of (G4S)n linker and endodomain sequences of TCR molecules on the function of armored-TCR T cells (G4S)n linkers are widely used in protein engineering and can provide fusion molecules with better flexibility to improve the function of the fusion molecules. To further improve the function of the TCR molecule incorporating the costimulatory receptor endodomain, the effect of (G4S)n linkers on the function of the fusion protein armored-TCR molecule was studied. The mut-ohmE141-αβ-G4S-OX40 and mut-ohmE141-αβ-(G4S)3-OX40 plasmids were constructed by introducing one or three G4S linkers between the costimulatory receptor domain and the C-terminus of the mut-ohmE141TCR molecule, and in addition, the mut-ohmE141-αβ-delC-G4S-OX40 and mut-ohmE141-αβ-delC-(G4S)3-OX40 plasmids were also designed by deleting the C-terminal endodomain of the mut-ohmTCRαβ constant region and then connecting it to the costimulatory receptor domain via one or three G4S linkers. Similarly, linkers were introduced into mut-ohmE141-αβ-CD40, mut-ohmE141-αβ-ICOS, and TCR-E315 and TCR-E316 with OX40, CD40 and ICOS modifications to construct the corresponding plasmids. After transfecting Lenti-X293T with the second generation packaging plasmids, viruses were obtained and used to infect primary T cells and select positive cells. The sorted TCR T cells were co-cultured with Raji-HLA-A*1101-LMP2-luciferase cells according to the scheme in section 5, counting as day 0, and then the cells were harvested on days 1, 3, 5, 7 and 10, respectively, for flow analysis. The results of T cell proliferation curves and absolute number E:T ratios (Figure 43A) show that the introduction of one or three G4S between the C-terminus of the TCR constant region and the OX40 endodomain can enhance the proliferation and killing ability of TCR T cells, and the deletion of intracellular amino acids at the C-terminus of the TCR constant region can further improve the function of TCR T cells compared with mut-ohmE141-αβ-wt without the addition of a linker.After further replacing OX40 with CD40 or ICOS, the proliferation and killing ability of TCR T cells were also significantly enhanced after the above modification compared with the control groups mut-ohmE141-αβ-CD40 and mut-ohmE141-αβ-ICOS, while similar results were obtained from TCR-E315 (Figure 43B) and TCR-E316.
[0249] 8. Effect of linking costimulatory structures to different TCR chains on T-cell function To investigate the effect of linking costimulatory domains to different TCR chains on T cell function, 4-1BB and OX40 endodomains were added to the C-terminus of TCRα, TCRβ, or both TCRα and β chains to construct plasmids as follows: mut-ohmE141-α-4-1BB, mut-ohmE141-β-4-1BB, mut-ohmE141-αβ-4-1BB, mut-ohmE141-α-OX40, mut-ohmE141-β-ox40, and mut-ohmE141-αβ-ox40. Similarly, plasmids were constructed with OX40 or 4-1BB endodomains added to different chains of TCR-E315 and TCR-E316. Virus was packaged with second generation packaging plasmids, which were then used to infect primary T cells. TCR positive T cells were co-cultured with Raji-HLA-A*1101-LMP2-luciferase cells according to the scheme in section 5, counting as day 0, and then cells were harvested on days 1, 3, 5, 7, and 10 for flow analysis, respectively. As can be seen from the results of the proliferation curve and the E:T ratio of the absolute number of T cells (Figure 44, Figure 45; A is E141, B is E315), compared with mut-ohmE141-wt without the addition of a costimulatory signal, TCR T cells in which the 4-1BB domain was introduced at the C-terminus of only one of the TCR α chain or β chain constant regions showed better activation and proliferation than those in which the 4-1BB domain was introduced at the C-terminus of both the TCR α chain and β chain, and such introduction showed a slightly better effect when it was performed only on the TCR α chain than when it was performed only on the TCR β chain. In contrast, the design of introducing the OX40 domain into the C-terminus of only the TCR α chain constant region was significantly superior to the design of introducing the OX40 domain into only the TCR β chain or into both chains (Figure 45). Meanwhile, similar results were obtained from TCR-E315 and TCR-E316. The above experimental results showed that the introduction of the costimulatory endodomain at the C-terminus of the TCR α chain promoted the best activation and proliferation of TCR T cells after recognition of the antigenic epitope of the target cell, and showed a strong improvement in killing function compared with the chimerization of the costimulatory domain in only the TCR β chain or in both the TCR α chain and the β chain simultaneously.
[0250] 9. Effect of ligation of a costimulatory endodomain containing a G4S linker to the C-terminus of the TCR α chain on the function of TCR T cells Combining the results of subsections 6, 7 and 8, to further improve the function of armored-TCR T cells incorporating costimulatory receptor endodomains, we tested the effect on armored-TCR T cell function of linking a costimulatory receptor endodomain directly to the C-terminus of the TCR α chain or to the C-terminus of the TCR α chain after removal of intracellular amino acids. Plasmids: wtE141-α-OX40, wtE141-α-G4S-OX40, wtE141-α-delC-G4S-OX40, wtE141-αβ-delC-G4S-OX40, hmE141-α-OX40, hmE141-α-G4S-OX40, hmE141-α-delC-G4S-OX40, hmE141-αβ-delC-G4S-OX40, cysE141-α-OX 40, cysE141-α-G4S-OX40, cysE141-α-delC-G4S-OX40, cysE141-αβ-delC-G4S-OX40, mut-ohmE141-α-OX40, mut-ohmE141-α-G4S-OX40, mut-ohmE141-α-delC-G4S-OX40 and mut-ohmE141-αβ-delC-G4S-OX40 were constructed. Plasmids: TCR-E141 with CD40 and ICOS, and TCR-E315, TCR-E316 with OX40, CD40 and ICOS were also constructed. Virus was packaged with second generation packaging plasmids, which were then used to infect primary T cells. TCR positive T cells were co-cultured with Raji-HLA-A*1101-LMP2-luciferase cells according to the scheme in section 5, counting as day 0, and then cells were harvested on days 1, 3, 5, 7 and 10 for flow analysis, respectively. The results (Figure 46) showed that the introduction of one G4S between the C-terminus of the TCR α chain and the costimulatory molecule increased the proliferation and killing ability of TCR T cells, and the deletion of intracellular amino acids at the C-terminus of the TCR constant region could further improve the function of TCR T cells compared to the control group without adding a linker. Compared with the group in which the chimeric molecule was added simultaneously to both the TCR α chain and the β chain, the same modification to the α chain showed a significantly better effect than the same modification to both chains simultaneously.Moreover, after further replacing OX40 with CD40 or ICOS, the proliferation and killing ability of TCRT linked to CD40 or ICOS via G4S after removing the intracellular amino acids of the α chain was also significantly enhanced compared with the control group, while similar results were obtained from TCR-E315 and TCR-E316.
[0251] 10. Evaluation of in vivo proliferation and antitumor activity of armored-TCR T cells To verify the proliferation and antitumor effects of TCR T cells containing costimulatory domains in vivo, 4×105 Raji-HLA-A*1101-LMP2-luciferase tumor cells were inoculated into 5-6 week old NOD / Scid IL-2R gamma null (NCG) female mice via tail vein to establish a mouse tumor model (see FIG. 47). On day 6, the mice were divided into 5 groups as follows: A: PBS injection group (injected with equal volume of PBS); B: mut-ohmE141 TCR T cell injection group; C: mut-ohmE141-αβ-ox40 TCR T cell injection group, D: mut-ohmE141-α-OX40 TCR T cell injection group, and E: mut-ohmE141-αβ-delC-G4S-OX40 TCR T cell injection group, where mice in B / C / D / E groups were injected with 4×105 TCR T cells by tail vein, and group A was injected with equal volume of 200μL PBS. In the following weeks, tumor cell growth in mice, human TCR T cell proliferation in mice, and mouse survival were monitored. As shown in Figure 48, TCR T cells containing the costimulatory molecules constructed in this example showed better proliferation in mice compared to the control group. Furthermore, as shown in Figures 47 and 49, compared with the control group, the mut-ohmE141-α-OX40 TCR T cells constructed in this example significantly extended the survival time of tumor-bearing mice, thus improving the survival rate of the mice.
[0252] 11.Evaluation of the function of TCR T cells expressing armored-CD3 molecules (1) In vitro functional evaluation To compare the effect of introducing a human costimulatory receptor endodomain into the C-terminus of different CD3 subunits, including the delta, epsilon, gamma and zeta chains, on TCR T cell function, according to the present invention, the CD3 molecule was modified to construct the following plasmids: CD3 delta -4-1BB, CD3 delta -CD28, CD3 delta -ICOS, CD3 delta -OX40, CD3 epsilon -4-1BB, CD3 epsilon -CD28, CD3 epsilon -ICOS, CD3 epsilon -OX40, CD3 gamma -4-1BB, CD3 gamma -CD28, CD3 gamma -ICOS, CD3 gamma -OX40, CD3 zeta -4-1BB, CD3 zeta -CD28, CD3 zeta -ICOS and CD3 zeta -OX40, in which CD3 was linked to the costimulatory receptor domain via a (G4S)3 linker. The modified armored-CD3 and cysE141 TCR molecules were simultaneously expressed in T cells, and then the double-positive cells obtained by flow sorting were co-cultured with Raji-HLA-A*1101-LMP2-luciferase according to Section 5 to evaluate the function of TCR T cells. From the results of the in vivo T cell proliferation curve, E:T ratio shown in Figure 50, and E:T ratio on day 7 shown in Figure 51, the cysE141 TCR T cells expressing CD3δ-OX40 or CD3γ-ICOS molecules had significantly superior proliferation and killing ability compared to other armored-CD3TCR T cells or the cysE141 TCR T control group without armored-CD3 molecules. At the same time, the cytokine IFNγ levels in the co-culture supernatants collected on day 7 ( FIG. 52 ) indicated that expression of CD3δ-OX40 or CD3γ-ICOS promoted better activation of cysE141 TCR T cells compared to cysE141 without armored-CD3 molecules, while similar results were obtained from TCR-E315 and TCR-E316.
[0253] (2) In vivo functional evaluation According to the above in vitro function results, 4×105 Raji-HLA-A*1101-LMP2-luciferase tumor cells were inoculated into 5-6 week old NCG female mice via tail vein to establish mouse tumor model (FIG. 53) to further evaluate the in vivo function of cysE141 TCR T cells expressing CD3δ-OX40 or CD3γ-ICOS molecules. On day 6, tumor-bearing mice were divided into four groups: A: PBS-injected group (injected with equal volume of PBS); B: cysE141TCR T cell-injected group; C: CD3δ-OX40cysE141TCR T cell-injected group; and D: CD3γ-ICOS cysE141TCR T cell-injected group, where mice in B / C / D / E groups were injected with 4×105 TCR T cells via tail vein, while mice in A group were injected with equal volume of 200 μL PBS. In the following weeks, tumor cell growth, in vivo TCR T cell proliferation and mouse survival were monitored. As shown in Figure 53 and Figure 55, compared with the control group, the CD3δ-OX40cysE141TCR T cells constructed in this example significantly extended the survival time of tumor-bearing mice. Furthermore, as shown in Figure 54, compared with the control group, the cysE141TCR T cells expressing CD3δ-OX40 molecules showed better proliferation in mice.
[0254] 12. Effect of costimulatory signals on TCR T cell function To investigate whether costimulatory molecules affect the function of γδTCR T cells, the endodomain sequences of human costimulatory molecules were introduced into the C-terminus of both TCRγ, TCRδ, and TCRγ and TCRδ constant regions, respectively. To further improve the function of γδTCR T cells incorporating costimulatory receptor endodomains, the costimulatory receptor domains were directly linked to the C-terminus of the TCRγ and δ chains via G4S linkers, with or without the removal of their intracellular amino acids, and plasmids were constructed as follows: TCR-G115-γ-OX40, TCR-G115-δ-OX40, TCR-G115-γδ-OX40, TCR-G115-γδ-G4S-OX40, TCR-G115-γδ-delC-G4S-OX40. The virus was packaged with a second generation packaging plasmid, which was then used to infect primary T cells and select positive cells. The selected γδTCR T cells were used as effector cells, and human Daudi cells (Burkitt's lymphoma) were used as target cells. The complete medium of 1640 without IL2 was used as the medium, and the cells were co-cultured for 24 hours at an E:T ratio of 5:1. The operation was performed according to the instructions of the lactate dehydrogenase (LDH) release method (Promega). The cell killing rate was calculated as follows: Cell killing rate (%) = [(A experimental cells - A effector cell spontaneous release well - A target cell spontaneous well) / (A target cell spontaneous maximum release well - A target cell spontaneous well)] × 100%. In addition, the supernatant after 24 hours of co-culture was collected and operated according to the instructions of the ELISA kit (Invitrogen) to detect the IFN-γ level in the supernatant. The results (Figures 56 and 57) show that, compared to the control group, γδT cells with the endodomain of a costimulatory molecule added to the C-terminus of the TCR have a stronger tumor clearance ability, and the design in which OX40 is introduced into the C-terminus of both the TCR γ and δ chains is significantly superior to the design in which OX40 is introduced into the C-terminus of only one of the TCR γ and δ chains. Compared to the control group without such introduction, the design by introducing G4S between the C-terminus of the TCR constant region with deletion of intracellular amino acids and the costimulatory molecule increased the killing ability of γδTCR T cells.
[0255] Example 3 Effect of N-terminal modification of the STAR constant region on STAR 1. Design of STAR receptor constant region domains In this example, hSTAR refers to a STAR comprising a human TCR constant region. hmct STAR refers to a STAR comprising a constant region with cysteine substitutions and transmembrane domain modifications as shown in Example 1, the mouse TCR alpha chain constant region is hmct STAR TCR alpha (SEQ ID NO: 41) and the mouse TCR beta chain constant region is hmct STAR TCRb (SEQ ID NO: 6), the specific structures are shown in Figure 58.
[0256] To further optimize the design of the STAR molecule, the N-terminus of the constant region of the STAR molecule was specifically rearranged to obtain better results based on constant region mouserization, cysteine site mutation and hydrophobic amino acid mutation in the α-chain constant region. The rearrangement means that some sequences were deleted, while some sequences were humanized. The importance of the humanized mutation was to reduce the non-human sequences in the STAR molecule as much as possible to avoid the possibility that STAR-T cells are rejected by the receptor in clinical applications to the greatest extent possible, while ensuring the function of the STAR molecule.
[0257] The schedule of 18 amino acid rearrangements (mouse sequence was DIQNPEPAVYQLKDPRSQ) at the N-terminus of the TCR α chain constant region was analyzed based on amino acid characteristics, and it was found that E6D, K13R, R16K and Q18S in the mouse and humanized sequences belonged to homologous amino acid substitutions, while the P15S substitution belonged to a non-polar to polar amino acid substitution, so it could be considered that the protein around this site is not conservative in nature and can be modified without affecting the protein function. In summary, the amino acid sequence at positions 1-14 was retained and humanized, and amino acids at positions 15-18 were deleted.
[0258] The schedule of 25 amino acid rearrangements (mouse sequence was DLRNVTPPKVSLFEPSKAEIANKQK) at the N-terminus of the TCR β chain constant region was analyzed based on amino acid characteristics, and it was found that only R3K and L12V in the mouse and humanized sequences were homologous amino acid substitutions, while T6F, K9E, S11A, K17E, A21S, N22H and K23T were heterogeneous amino acid substitutions, so it could be considered that the proteins around these sites are not conservative in nature and can be modified without affecting the function of the protein. In summary, the amino acid sequence at positions 1 to 16 was retained and humanized, and amino acids at positions 17 and 21 to 25 were deleted.
[0259] Specific structures are shown in Figure 58, after N-terminal configuration the resulting TCR alpha chain constant region was Nrec STAR TCRa (SEQ ID NO: 42) and the resulting TCR beta chain constant region was Nrec STAR TCRb (SEQ ID NO: 43).
[0260] 2. Design of STAR costimulatory factors 1) Combination of different optimization methods in STAR To test the effect of costimulatory factors on different STAR functions, the original non-optimized STAR structure (human TCRα / β STAR, hSTAR), hmct STAR based on hSTAR with C-region murine, cystine and transmembrane modifications, and Nrec STAR based on hmct STAR with N-terminal modifications were selected.
[0261] 2) Design of STAR structures containing costimulatory factors According to the present invention, in order to enhance the toxicity and T cell proliferation persistence of STAR-T cells, a humanized costimulatory receptor endodomain sequence was introduced at the C-terminus of the STAR constant region (Figure 59) to study the effect on STAR-T cell function. As the STAR constant region structures of the present invention, the original non-optimized STAR structure (human TCR α / β STAR, hSTAR), hmct STAR modified based on hSTAR, and Nrec STAR based on hmct STAR modified at the N-terminus were selected. The costimulatory signaling structures included the intracellular signaling domains of CD40, OX40, ICOS, CD28, 4-1BB and CD27. In the present invention, the modifications can occur in the TCR α chain, β chain, and α chain and β chain. In the present invention, the costimulatory molecule modifications occurred in the TCR α chain and β chain, as shown in Figure 60.
[0262] 3.GC33-STAR-T function targets GPC39 1) Determination of CD19-targeting antibody sequence The published scFv sequence FMC63 was selected as the GPC3-targeting antibody heavy chain variable region (anti-GPC3 GC33VH, SEQ ID NO: 53) and antibody light chain variable region (anti-GPC3 GC33-VL, SEQ ID NO: 52).
[0263] 2) Construction of vectors containing CD19-targeting STAR and costimulatory factors STAR contained two polypeptide chains: the first polypeptide chain formed by fusing anti-GPC3 FMC63-VL with the TCR bC chain of hSTAR / hmct STAR / Nrec STAR, respectively, and the second polypeptide chain formed by fusing anti-GPC3 GC33 VH with the TCR aC chain of hSTAR / hmct STAR / Nrec STAR, respectively. The GM-CSF signal peptide was used for both chains. The two chain sequences of hSTAR / hmct STAR / Nrec STAR were linked by a polypeptide fragment of Furin-SGSG-p2A protease cleavage site, transcribed and translated together into protein, and then cleaved by proteases corresponding to Furin and p2A, finally producing two independent protein chains. The whole gene was inserted into the lentiviral expression vector pHAGE via the restriction endonuclease sites NheI and NotI. The vector had an ampicin resistance gene, an EF 1 alpha promoter, and an IRES-RFP fluorescent reporter gene. The following plasmids were obtained by cloning, assembling, transformation, sequencing and plasmid extraction of gene fragments: GC33-hSTAR, GC33-hmct STAR and GC33-Nrec STAR.
[0264] Construction of STAR vectors containing costimulatory factors: Based on three GPC3-targeting STAR vectors: GC33-hSTAR, GC33-hmct STAR and GC33-Nrec STAR, STAR vectors containing costimulatory factors CD40, OX40, ICOS, CD28, 41BB and CD27 were constructed, and the above sequences were obtained by gene synthesis. The costimulatory factors were added to the GC33-hSTAR, GC33-hmct STAR and GC33-Nrec STAR vectors by PCR, and at the same time, homologous recombination was added by adding the same costimulatory factors to the TCR α and β chains. GC33-hSTAR-CD40, GC33-hSTAR-OX40, GC33-hSTAR-ICOS, GC33-hSTAR-CD28, GC33-hSTAR-41BB, GC33-hSTAR-CD27, GC33-hmct STAR-CD40, GC33-hmct STAR-OX40, GC33-hmct STAR-ICOS, GC33-hmct STAR-CD28, GC33-hmct STAR-41BB, GC33-hmct STAR-CD27, GC33-Nrec STAR-CD40, GC33-Nrec STAR-OX40, GC33-Nrec STAR-ICOS, GC33-Nrec STAR-CD28, GC33-Nrec STAR-41BB and GC33-Nrec STAR-CD27 was finally constructed.
[0265] 3) Detection of the killing capacity of CD19-targeted STAR and STAR-T with costimulatory factors Non-infected T cells (NC group) and GC33-hSTAR, GC33-hmct STAR, GC33-Nrec STAR GC33-hSTAR-CD40, GC33-hSTAR-OX40, GC33-hSTAR-ICOS, GC33-hSTAR-CD28, GC33-hSTAR-41BB, GC33-hSTAR-CD27, GC33-hmct STAR-CD40, GC33-hmct STAR-OX40, GC33-hmct STAR-ICOS, GC33-hmct STAR-CD28, GC33-hmct STAR-41BB, GC33-hmct STAR-CD27, GC33-Nrec STAR-CD40, GC33-Nrec STAR-OX40, GC33-Nrec STAR-ICOS, GC33-Nrec STAR-CD28, GC33-Nrec T cells expressing STAR-41BB and GC33-Nrec STAR-CD27 were co-cultured with HUH-7-luc cells in 24-well plates for 24 hours. The positive number of T cells was adjusted to 4E5 according to the RFP positive rate, respectively, and the number of RAJI-luc cells was 4E5, totaling 1mL of co-culture system. After 24 hours of co-culture, cells were centrifuged at 1500 rpm and room temperature for 5 minutes, and the supernatant was gently discarded, and then 400 microliters of protein lysate was added at room temperature to dissolve under shaking for 10 minutes, then transferred to EP tubes and centrifuged at 12000 rpm at 4°C for 10 minutes, and two multiple wells were taken for each sample with 20 microliters per well and added to a white 96-well plate, and 50 μL of luciferase substrate was added to detect the fluorescence value by a multifunctional microplate reader, and the killing of target cells in each group was calculated. The results showed that the killing efficiency of hSTAR was significantly lower than that of hmct STAR and Nrec STAR, of which Nrec STAR was the highest. The results of the same STAR containing costimulatory factors showed that OX40 and ICOS could significantly increase the killing effect of STAR, while other costimulatory factors had no significant effect on the killing ability of STAR, and 41BB reduced the killing function of STAR, but the difference was not significant (Figure 61).
[0266] Figure 4. Detection of nuclear RelB levels in GPC3-targeted STAR and STAR-T with costimulatory factors. The following viruses were obtained: GC33-hSTAR, GC33-hmct STAR, GC33-Nrec STAR, GC33-hSTAR-CD40, GC33-hSTAR-OX40, GC33-hSTAR-ICOS, GC33-hSTAR-CD28, GC33-hSTAR-41BB, GC33-hSTAR-CD27, GC33-hmct STAR-CD40, GC33-hmct STAR-OX40, GC33-hmct STAR-ICOS, GC33-hmct STAR-CD28, GC33-hmct STAR-41BB, GC33-hmct STAR-CD27, FMC63-Nrec STAR-CD40, FMC63-Nrec STAR-OX40, FMC63-Nrec STAR-ICOS, FMC63-Nrec STAR-CD28, FMC63-Nrec STAR-41BB and FMC63-Nrec STAR-CD27 were infected in Jurkat cells at a titer of MOI=1, and 4 days after infection, the T cell lines were co-cultured with the HUH-7-luc cell line in a 12-well plate where the STAR-T cells were 4E6 and the target cells were 2E5 (the target cells were seeded in the 12-well plate 1 day before), and after 6 hours of co-culture, the cells were harvested for nuclear protein extraction and detected by Western blotting for nuclear RelB levels. The results, as shown in Figure 62, showed that after adding costimulatory factors, the nuclear RelB levels were very low in the GC33-hSTAR, GC33-hmct STAR and GC33-Nrec STAR groups without costimulatory factors, which was consistent with the uninfected STAR-T group, and other costimulatory factors except CD28 significantly increased the nuclear RelB levels, of which 41BB improved the nuclear RelB levels the most.
[0267] 4. CD19-targeted FMC63-STAR-T Function 1) Determination of CD19-targeting antibody sequence The published scFv sequence FMC63 was selected as the CD19-targeting antibody heavy chain variable region (anti-CD19 FMC63-VH, SEQ ID NO: 50) and antibody light chain variable region (anti-CD19 FMC63-VL, SEQ ID NO: 51).
[0268] 2) Construction of vectors containing CD19-targeting STAR and costimulatory factors STAR contained two polypeptide chains: the first polypeptide chain formed by fusing anti-CD19 FMC63-VL with the TCR bC chain of hSTAR / hmct STAR / Nrec STAR, respectively, and the second polypeptide chain formed by fusing anti-CD19 FMC63 VH with the TCR aC chain of hSTAR / hmct STAR / Nrec STAR, respectively. The GM-CSFR signal peptide was used for both chains. The two chain sequences of hSTAR / hmct STAR / Nrec STAR were linked by a polypeptide fragment of Furin-SGSG-p2A protease cleavage site, transcribed and translated together into protein, and then cleaved by proteases corresponding to Furin and p2A, finally producing two independent protein chains. The whole gene was inserted into the lentiviral expression vector pHAGE via the restriction endonuclease sites NheI and NotI. The vector had an ampicin resistance gene, an EF 1 alpha promoter, and an IRES-RFP fluorescent reporter gene. The following plasmids were obtained by cloning, assembling, transformation, sequencing and plasmid extraction of gene fragments: FMC63-hSTAR, FMC63-hmct STAR, FMC63-Nrec STAR.
[0269] Construction of STAR vectors containing costimulatory factors: Based on three CD19-targeting STAR vectors, FMC63-hSTAR, FMC63-hmct STAR and FMC63-Nrec STAR, costimulatory factors CD40, OX40, ICOS, CD28, 41BB and CD27 were constructed, and the above sequences were obtained by gene synthesis. The costimulatory factors were added to the FMC63-hSTAR, FMC63-hmct STAR and FMC63-Nrec STAR vectors by PCR and homologous recombination by adding the same costimulatory factors to the TCR α and β chains simultaneously. FMC63-hSTAR-CD40, FMC63-hSTAR-OX40, FMC63-hSTAR-ICOS, FMC63-hSTAR-CD28, FMC63-hSTAR-41BB, FMC63-hSTAR-CD27, FMC63-hmct STAR-CD40, FMC63-hmct STAR-OX40, FMC63-hmct STAR-ICOS, FMC63-hmct STAR-CD28, FMC63-hmct STAR-41BB, FMC63-hmct STAR-CD27, FMC63-Nrec STAR-CD40, FMC63-Nrec STAR-OX40, FMC63-Nrec STAR-ICOS, FMC63-Nrec STAR-CD28, FMC63-Nrec STAR-41BB and FMC63-Nrec STAR-CD27 was finally constructed.
[0270] 3) Detection of the killing capacity of CD19-targeted STAR and STAR-T with costimulatory factors Non-infected T cells (NC group), FMC63-hSTAR, FMC63-hmct STAR, FMC63-Nrec STAR, FMC63-hSTAR-CD40, FMC63-hSTAR-OX40, FMC63-hSTAR-ICOS, FMC63-hSTAR-CD28, FMC63-hSTAR-41BB, FMC63-hSTAR-CD27, FMC63-hmct STAR-CD40, FMC63-hmct STAR-OX40, FMC63-hmct STAR-ICOS, FMC63-hmct STAR-CD28, FMC63-hmct STAR-41BB, FMC63-hmct STAR-CD27, FMC63-Nrec STAR-CD40, FMC63-Nrec STAR-OX40, FMC63-Nrec STAR-ICOS, FMC63-Nrec STAR-CD28, FMC63-Nrec STAR-41BB and FMC63-Nrec STAR-CD27 were co-cultured with RAJI-luc cells in 24-well plates for 24 hours. The positive cell number of T cells was adjusted to 4E5 according to the RFP positive rate, respectively, and the number of RAJI-luc cells was 4E5, totaling 1mL of co-culture system. After 24 hours of co-culture, the co-cultured cells were mixed evenly, 150μL of suspension was sucked out, 70μL of luciferase substrate was added, and after low-speed shaking in the dark for 10 minutes, the fluorescence value was detected by a multi-function microplate reader, and the target cell killing effect of each group was calculated. The results showed that the killing efficiency of hSTAR was significantly lower than that of hmct STAR and Nrec STAR, among which Nrec STAR was the highest. The results of the same STAR with costimulatory factors showed that OX40 and ICOS could significantly increase the killing effect of STAR, while other costimulatory factors had no significant effect on the killing ability of STAR, and 41BB reduced the killing function of STAR, but the difference was not significant (Figure 61).
[0271] 4) Detection of nuclear RelB levels in CD19-targeted STAR and STAR-T cells containing costimulatory factors Obtained viruses: FMC63-hSTAR, FMC63-hmct STAR, FMC63-Nrec STAR, FMC63-hSTAR-CD40, FMC63-hSTAR-OX40, FMC63-hSTAR-ICOS, FMC63-hSTAR-CD28, FMC63-hSTAR-41BB, FMC63-hSTAR-CD27, FMC63-hmct STAR-CD40, FMC63-hmct STAR-OX40, FMC63-hmct STAR-ICOS, FMC63-hmct STAR-CD28, FMC63-hmct STAR-41BB, FMC63-hmct STAR-CD27, FMC63-Nrec STAR-CD40, FMC63-Nrec STAR-OX40, FMC63-Nrec STAR-ICOS, FMC63-Nrec STAR-CD28, FMC63-Nrec STAR-41BB and FMC63-Nrec STAR-CD27 were infected in Jurkat cells at a titer of MOI=1, and 4 days after infection, T cell lines and CD19 protein were co-cultured in 12-well plates (2 μg / mL, 500 μL was coated on 12-well plates and left in a 4°C refrigerator overnight) with STAR-T cells at 4E6 and target cells at 2E5 (target cells were seeded on 12-well plates 1 day before), and after 6 hours of incubation, cells were harvested for extraction of nuclear proteins, which were detected by Western blotting for nuclear RelB levels. The results, as shown in Figure 62, showed that after the addition of costimulatory factors, the nuclear RelB levels were very low in the FMC63-hSTAR, FMC63-hmct STAR and FMC63-Nrec STAR groups without costimulatory factors, which was consistent with the uninfected STAR-T group, and other costimulatory factors except CD28 significantly increased the nuclear RelB levels, of which 41BB improved the nuclear RelB levels the most.
[0272] 5.CD19 targeting 334-STAR-T function 1) Determination of CD19-targeting antibody sequence The 334 antibody sequence developed by the inventors was selected as the CD19-targeting antibody heavy chain variable region (anti-CD19 334-VH, SEQ ID NO: 54) and antibody light chain variable region (anti-CD19 334-VL, SEQ ID NO: 55).
[0273] 2) Construction of vectors containing CD19-targeting STAR and costimulatory factors STAR contained two polypeptide chains: the first polypeptide chain formed by fusing anti-CD19 334-VL with the TCR bC chain of hSTAR / hmct STAR / Nrec STAR, respectively, and the second polypeptide chain formed by fusing anti-CD19 334 VH with the TCR aC chain of hSTAR / hmct STAR / Nrec STAR, respectively. The GM-CSFR signal peptide was used for both chains. The two chain sequences of hmct STAR / Nrec STAR were linked by a polypeptide fragment of Furin-SGSG-p2A protease cleavage site, transcribed and translated together into protein, and then cleaved by proteases corresponding to Furin and p2A, finally producing two independent protein chains. The whole gene was inserted into the lentiviral expression vector pHAGE via the restriction endonuclease sites NheI and NotI. The vector had an ampicin resistance gene, an EF 1 alpha promoter and an IRES-RFP fluorescent reporter gene. The following plasmids were obtained by cloning, assembling, transformation, sequencing and plasmid extraction of gene fragments: 334-hmct STAR, 334-Nrec STAR.
[0274] Construction of STAR vectors containing costimulatory factors: Based on the CD19-targeting STAR vectors, 334-hmct STAR and 334-Nrec STAR, costimulatory factor OX40 was constructed, and the above sequence was obtained by gene synthesis. The costimulatory factors were added to the 334-hmct STAR and 334-Nrec STAR vectors by PCR and homologous recombination by adding the same costimulatory factors to the TCR α and β chains simultaneously. Finally, 334-hmct STAR-OX40 and 334-Nrec STAR-OX40 were constructed.
[0275] 3) Detection of the killing capacity of CD19-targeted STAR and STAR-T with costimulatory factors Non-infected T cells (NC group), 334-hmct STAR, 334-Nrec STAR, 334-hmct STAR-OX40 and 334-Nrec STAR-OX40 were co-cultured with RAJI-luc cells in 24-well plates for 24 hours. The positive cell number of T cells was adjusted to 4E5 according to the RFP positive rate, respectively, and the number of RAJI-luc cells was 4E5, totaling 1 mL of co-culture system. After 24 hours of co-culture, the co-cultured cells were mixed evenly, 150 μL of suspension was sucked out, 70 μL of luciferase substrate was added, and after low-speed shaking in the dark for 10 minutes, the fluorescence value was detected by a multi-function microplate reader, and the target cell killing effect of each group was calculated. The results showed that the killing efficiency of hmct STAR was significantly lower than that of Nrec STAR, which was the highest. In addition, OX40 can significantly increase the killing effect of STAR and the nuclear RelB level. Please refer to Figure 63.
[0276] 6. Dual targeting of CD19 and CD20 STAR-T function 1) Determination of CD19 and CD20 targeting antibody sequences CD19-targeting antibody heavy chain variable region (anti-CD19 FMC63-VH, SEQ ID NO:50) and antibody light chain variable region (anti-CD19 FMC63-VL, SEQ ID NO:51); CD20-targeting antibody heavy chain variable region (anti-CD20 2C6-VH, SEQ ID NO:62) and antibody light chain variable region (anti-CD20 2C6-VL, SEQ ID NO:63).
[0277] 2) Construction of CD19- and CD20-targeting STARs and vectors containing costimulatory factors STAR contained two polypeptide chains: the first polypeptide chain formed by fusing anti-CD20 2C6 VL-(G4S)3-VH with the TCR bC chain of hmct STAR / Nrec STAR, respectively, and the second polypeptide chain formed by fusing nti-CD19 FMC63 VL-(G4S)3-VH with the TCR aC chain of hmct STAR / Nrec STAR, respectively. The GM-CSFR signal peptide was used for both chains. The two chain sequences of hmct STAR / Nrec STAR were linked by a polypeptide fragment of Furin-SGSG-p2A protease cleavage site, transcribed and translated together into protein, and then cleaved by proteases corresponding to Furin and p2A, finally producing two independent protein chains. The whole gene was inserted into the lentiviral expression vector pHAGE via the restriction endonuclease sites NheI and NotI. The vector contained an ampicin resistance gene, an EF1α promoter and an IRES-RFP fluorescent reporter gene. The following plasmids were obtained by cloning, assembling, transformation, sequencing and plasmid extraction of gene fragments: FMC63-2C6-hmct STAR and FMC63-2C6-Nrec STAR.
[0278] Construction of STAR vectors containing costimulatory factors: Based on CD19 and CD20 targeting STAR vectors, FMC63-2C6-hmct STAR and FMC63-2C6-Nrec STAR, costimulatory factor OX40 was constructed, and the above sequence was obtained by gene synthesis. The costimulatory factor was added to FMC63-2C6-hmct STAR and FMC63-2C6-Nrec STAR vectors by PCR and homologous recombination by adding the same costimulatory factor to TCR α chain and β chain simultaneously. Finally, FMC63-2C6-hmct STAR-OX40 and FMC63-2C6-Nrec STAR-OX40 were constructed.
[0279] 3) Detection of the killing capacity of CD19- and CD20-targeted STAR and STAR-T with costimulatory factors Non-infected T cells (NC group), FMC63-2C6-hmct STAR, FMC63-2C6-Nrec STAR, FMC63-2C6-hmct STAR-OX40 and FMC63-2C6-Nrec STAR-OX40 were co-cultured with RAJI-luc cells in a 24-well plate for 24 hours. The positive number of T cells was adjusted to 4E5 according to the RFP positive rate, respectively, and the number of RAJI-luc cells was 4E5, totaling 1 mL of co-culture system. After 24 hours of co-culture, the co-cultured cells were mixed evenly, 150 μL of suspension was sucked out, 70 μL of luciferase substrate was added, and after low-speed shaking for 10 minutes in the dark, the fluorescence value was detected by a multi-function microplate reader, and the target cell killing effect of each group was calculated. The results showed that the killing efficiency of hmct STAR was significantly lower than that of Nrec STAR, which was the highest. Furthermore, OX40 can significantly increase the killing effect of STAR and nuclear RelB levels. See Figure 64.
[0280] Sequence Listing SEQ ID NO: 1: Amino acid sequence of the wild-type human TCR alpha constant region DIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDF KSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESSCDVKLVEKSFETDTNLNFQNLS VIGFRILLLKVAGFNLLMTLRLWSS* SEQ ID NO:2 Amino acid sequence of wild-type human TCR β constant region DLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVST DPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAK PVTQIVSAEAWGRADCGFTSVSYQQGVLSATILYEILLGKATLYAVLVSALVLMAMVK RKDF* SEQ ID NO:3 Amino acid sequence of wild-type mouse TCR alpha constant region DIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLSVMGLRILLLKVAGFNLLMTLRLWSS SEQ ID NO: 4: Amino acid sequence of wild-type mouse TCR β constant region DLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADCGITSASYQQGVLSATILYEILLGKATLYAVLVSTLVVMAMVKRKNS SEQ ID NO: 5 Mouse T-cell receptor alpha chain constant region with cysteine substitution (Mouse TCRaC-Cys) DIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLSVMGLRILLLKVAGFNLLMTLR LWSS SEQ ID NO:6 Mouse T cell receptor beta chain constant region with cysteine substitution (Mouse TCRβC-Cys) DLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVCTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADCGITSASYQQGVLSATILYEILLGKATLYAVLVSTLVVMAMVKRKNS SEQ ID NO: 7 Mouse T cell receptor alpha chain constant region with hydrophobic amino acid substitutions (mouse TCRaC-TM9) DIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLLVIVLRILLLKVAGFNLLMTLRL WSS SEQ ID NO: 8 Mouse T cell receptor alpha chain constant region with a cysteine substitution in the transmembrane domain (mouse TCRaC-Arg mut) DIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLLVIVLRILLLRVAGFNLLMTLRLWSS SEQ ID NO: 9 Mouse T cell receptor beta chain constant region with cysteine substitution in the endodomain (mouse TCRβC-Arg mut) DLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVCTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADCGITSASYQQGVLSATILYEILLGRATLYAVLVSTLVVMAMVRRRNS SEQ ID NO: 10 Amino acid sequence of CD40 endodomain KKVAKKPTNKAPHPKQEPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISV SEQ ID NO: 11 Amino acid sequence of OX40 endodomain RRDQRLPPDAHKPPGGGSFRTPIQEEQADAHSTLAKI SEQ ID NO: 12 Amino acid sequence of ICOS endodomain KKKYSSSVHDPNGEYMFMRAVNTAKKSRLTDVTL SEQ ID NO: 13: Amino acid sequence of CD28 endodomain RSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRS SEQ ID NO: 14: Amino acid sequence of 4-1BB endodomain KRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEEEGGCEL SEQ ID NO: 15 Amino acid sequence of CD27 endodomain QRRKYRSNKGESPVEPAEPCRYSCPREEEGSTIPIQEDYRKPEPACSP SEQ ID NO: 16 Amino acid sequence of the G4S linker GGGGS SEQ ID NO:17 Amino acid sequence of the (G4S)2 linker GGGGSGGGGS SEQ ID NO:18 Amino acid sequence of the (G4S)3 linker GGGGSGGGGSGGGGS SEQ ID NO:19 Amino acid sequence of the (G4S)4 linker GGGGSGGGGSGGGGSGGGGS SEQ ID NO:20 Amino acid sequence of the (G4S)5 linker GGGGSGGGGSGGGGSGGGGSGGGGS SEQ ID NO:21 Amino acid sequence of the (G4S)6 linker GGGGSGGGGSGGGGSGGGGSGGGGSGGGGS SEQ ID NO:22 Amino acid sequence of the (G4S)7 linker GGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGS SEQ ID NO:23 Amino acid sequence of the (G4S)8 linker GGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGS SEQ ID NO:24 Amino acid sequence of the (G4S)9 linker GGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGS SEQ ID NO:25 Amino acid sequence of the (G4S)10 linker GGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGSGGGGS SEQ ID NO: 26 Endodomain-deleted mouse T cell receptor alpha chain constant region with cysteine substitutions and hydrophobic modifications (mouse TCRαC-del mut) DIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLLVIVLRILLLKVAGFNLLMTLRLW SEQ ID NO: 27 Cysteine-substituted endodomain-deleted mouse T cell receptor beta chain constant region (mouse TCRβC-del mut) DLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVCTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADCGITSASYQQGVLSATILYEILLGKATLYAVLVSTLVVMAM SEQ ID NO: 28 Amino acid sequence of human CD3γ MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLRRN SEQ ID NO: 29 Amino acid sequence of human CD3δ MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK SEQ ID NO: 30 Amino acid sequence of human CD3ε MQSGTHWRVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS KPEDANFYLYLRARVCENCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAKPVTRGAGAGGRQRGQNKERPPPVPNPDYEPIRKGQRDLYSGLNQRRI SEQ ID NO: 31 Amino acid sequence of human CD3ζ MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR SEQ ID NO: 32 Amino acid sequence of human IL-2β receptor endodomain NCRNTGPWLKKVLKCNTPDPSKFFSQLSSEHGGDVQKWLSSPFPSSSFSPGGLAPEISPLEVLERDKVTQLLPLNTDAYLSLQELQGQDPTHLV SEQ ID NO: 33: Amino acid sequence of human IL-7α receptor endodomain KKRIKPIVWPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIHRVDDIQARDEVEGFLQDTFPQQLEESEKQRLGGDVQSPNCPSEDVVITPESFGRDSSLTCLAGNVSACDAPILSSSRSLDCRESGKNGPHVYQDLLLSLGTTNSTLPPPFSLQSGILTLNPVAQGQPILTSLGSSNQEEAYVTMSSFYQNQ SEQ ID NO: 34: Amino acid sequence of human IL-21 receptor endodomain SLKTHPLWRLWKKIWAVPSPERFFMPLYKGCSGDFKKWVGAPFTGSSLELGPWSPEVPSTLEVYSCHPPRSPAKRLQLTELQEPAELVESDGVPKPSFWPTAQNSGGSAYSEERDRPYGLVSIDTVTVLDAEGPCTWPCSCE DDGYPALDLDAGLEPSPGLEDPLLDAGTTVLSCGCVSAGSPGGLGGPLGSLLDRLKPPLADGEDWAGGLPWGGRSPGGVSESEAGSPLAGLDMDTFDSGFVGSDCSSPVECDFTSPGDEGPPRSYLRQWVVIPPPLSSPGPQAS SEQ ID NO: 35 Amino acid sequence of human STAT5 activating portion YRHQ SEQ ID NO: 36: Amino acid sequence of human IL-2β receptor endodomain and human STAT5 activation portion NCRNTGPWLKKVLKCNTPDPSKFFSQLSSEHGGDVQKWLSSPFPSSSFSPGGLAPEISPLEVLERDKVTQLLPLNTDAYLSLQELQGQDPTHLVGGGGSYRHQ SEQ ID NO: 37 Amino acid sequence of human IL-7α receptor endodomain and human STAT5 activation portion KKRIKPIVWPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIHRVDDIQARDEVEGFLQDTFPQQLEESEKQRLGGDVQSPNCPSEDVVITPESFGRDSSLTCLAGNVSACDAPILSSSRSLDCRESGKNGPHVYQDLLLSLGTTNSTLPPPFSLQSGILTLNPVAQGQPILTSLGSSNQEEAYVTMSSFYQNQGGGGSYRHQ SEQ ID NO: 38 Amino acid sequence of anti-CD20 OFA ScFv EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPITFGQGTRLEIKGGGGSGGGGSGGGS EVQLVESGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSTISWNSGSIGYADSVKGRFTISRDNAKKSLYLQMNSLRAEDTALYYCAKDIQYGNYYYGMDVWGQGTTVTVSS SEQ ID NO: 39 Amino acid sequence of anti-CD19 FMC63 ScFv DIQMTQTTSSLSASLGDRVTISCRASQDISKYLNWYQQKPDGTVKLLIYHTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPYTFGGGTKLEITGGGGSGGGGSGGGG SEVKLQESGPGLVAPSQSLSVTCTVSGVSLPDYGVSWIRQPPRKGLEWLGVIWGSETTYYNSALKSRLTIIKDNSKSQVFLKMNSLQTDDTAIYYCAKHYYYGGSYAMDYWGQGTSVTVSS SEQ ID NO: 40 Amino acid sequence of red fluorescent protein MASSEDVIKEFMRFKVRMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFQYGSKAYVKHPADIPDYLKLSFPEGFKWERVMNFEDGGVVTVTQDSSL QDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEASTERMYPEDGALKGEIKMRLKLKDGGHYDAEVKTTYMAKKPVQLPGAYKTDIKLDITSHNEDYTIVEQYERAEGRHSTGA* SEQ ID NO: 41 Mouse TCRaC-Cys-TM9 (hmct STAR TCRaC) DIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLLVIVLRILLLKVAGFNLLMTLRLWSS SEQ ID NO: 42 Mouse TCRaC-Cys-TM9-N.Rec (Nrec STAR TCRaC) DIQNPDPAVYQLRDDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLLVIVLRILLLKVAGFNLLMTLRLWSS SEQ ID NO: 43 Mouse T cell receptor beta chain constant region with N-terminal modifications and cysteine substitutions (Mouse TCRbC-Cys-N.Rec, Nrec STAR TCRbC) DLKNVFPPEVAVFEPSAEIATLVCLARGFFPDHVELSWWVNGKEVHSGVCTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADCGITSASYQQGVLSATILYEILLGKATLYAVLVSTLVVMAMVKRKNS >SEQ ID NO: 44 Amino acid sequence of the TCR-E141α variable region MKRILGALLGLLSAQVCCVRGIQVEQSPPDLILQEGANSTLRCNFSDSVNNLQWFHQNPWGQLINLFYIPSGTKQNGRLSATTVATERYSLLYISSSQTTDSGVYFCAVLNNNDMRFGAGTRLTVKP >SEQ ID NO: 45 Amino acid sequence of CR-E141β variable region MGCRLLCCAVLCLLGAVPIDTEVTQTPKHLVMGMTNKKSLKCEQHMGHRAMYWYKQKAKKPPELMFVYSYEKLSINESVPSRFSPECPNSSLLNLHLHALQPEDSALYLCASSQGRWYEQYFGPGTRLTVT >SEQ ID NO: 46 Amino acid sequence of the TCR-E315α variable region METLLGLLILWLQLQWVSSKQEVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAGKTSYDKVIFGPGTSLSVIP >SEQ ID NO: 47 Amino acid sequence of the TCR-E315β variable region MGTRLLCWAALCLLGAELTEAGVAQSPRYKIIEKRQSVAFWCNPISGHATLYWYQQILGQGPKLLIQFQNNGVVDDSQLPKDRFSAERLKGVDSTLKIQPAKLEDSAVYLCASSVFPTSVEQYFGPGTRLTVT >SEQ ID NO: 48 Amino acid sequence of the TCR-E316α variable region MSLSSLLKVVTASLWLGPGIAQKITQTQPGMFVQEKEAVTLDCTYDTSDQSYGLFWYKQPSSGEMIFLIYQGSYDEQNATEGRYSLNFQKARKSANLVISASQLGDSAMYFCAMVSGAGGGADGLTFGKGTHLIIQP >SEQ ID NO: 49 Amino acid sequence of the TCR-E316β variable region MSNQVLCCVVLCLLGANTVDGGITQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSIGVGLSNTEAFFGQGTRLTVV SEQ ID NO: 50 Anti-CD19 FMC63 VH EVKLQESGPGLVAPSQSLSVTCTVSGVSLPDYGVSWIRQPPRKGLEWLGVIWGSETTYYNSALKSRLTIIKDNSKSQVFLKMNSLQTDDTAIYYCAKHYYYGGSYAMDYWGQGTSVTVSS SEQ ID NO: 51 Anti-CD19 FMC63 VL DIQMTQTTSSLSASLGDRVTISCRASQDISKYLNWYQQKPDGTVKLLIYHTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPYTFGGGTKLEIT SEQ ID NO: 52 Anti-GPC3 GC33 VL DVVMTQSPLSLPVTPGEPASISCRSSQSLVHSNRNTYLHWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCSQNTHVPPTFGQGTKLEIKR SEQ ID NO: 53 Anti-GPC3 GC33 VH QVQLVQSGAEVKKPGASVKVSCKASGYTFTDYEMHWVRQAPGQGLEWMGALDPKTGDTAYSQKFKGRVTLTADESTSTAYMELSSLRSEDTAVYYCTRFYSYTYWGQGTLVTVSS SEQ ID NO: 54 Anti-CD19 334 VH QVQLQQSGAELVRPGASVKLSCKALGFIFTDYEIHWVKQTPVHGLEWIGAFHPGSGGSAYNQKFKGKATLTADKSSSTAYMELSSLTFEDSAVYHCTRQLGPDWGQGTLVTVS SEQ ID NO: 55 Anti-CD19 334 VL DVVMTQTPLTLSVTIGQPASISCKSSQSLLESDGKTYLNWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLRISRVEAEDLGVYYCWQGTQFPWTFGGGTKLEIK SEQ ID NO:56 Endodomain-deleted mouse T-cell receptor alpha chain constant region with N-terminal modifications, cysteine substitutions and hydrophobic modifications in the transmembrane domain DIQNPDPAVYQLRDDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLLVIVLRILLLKVAGFNLLMTLRLW SEQ ID NO:57 Endodomain-deleted mouse T cell receptor beta chain constant region with N-terminal modifications and cysteine substitutions DLKNVFPPEVAVFEPSAEIATLVCLARGFFPDHVELSWWVNGKEVHSGVCTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADCGITSASYQQGVLSATILYEILLGKATLYAVLVSTLVVMAM SEQ ID NO: 58 Wild-type human amino acid sequence of the TCR gamma chain constant region DKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWQEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRCIVRHENNKNGVDQEIIFPPIKTDVITMDPKDNCSKDANDTLLLQLTNTSAYYMYLLLLLKSVVVYFAIITCCLLRRTAFCCNGEKS SEQ ID NO: 59 Amino acid sequence of wild-type mouse TCR gamma chain constant region XKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEKFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAMGKEHRCIVKHENNKGGADQEIFFPSIKKVAVSTKPTTCWQDKNDVLQLQFTITSAYYTYLLLLLKSVIYLAIISFSLLRRTSVCGNEKKS SEQ ID NO: 60 Wild-type human amino acid sequence of the TCR delta chain constant region XSQPHHTKPSVFVMKNGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNKTVHSTDFEVKTDSTDHVKPKETENTKQPSKSCHKPKAIVHTEKVNMMSLTVLGLRMLFAKTVAVNFLLTAKLFFL* SEQ ID NO: 61 Amino acid sequence of wild-type mouse TCR δ chain constant region XSQPPAKPSVFIMKNGTNVACLVKDFYPKEVTISLRSSKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETVHSTDFEPYANSFNNEKLPEPENDTQISEPCYGPRVTVHTEKVNMMSLTVLGLRLLFAKTIAINFLLTVKLFF* SEQ ID NO: 62 Anti-CD20 2C6 VH AVQLVESGGGLVQPGRSLRLSCAASGFTFGDYTMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCTKDNQYGSGSTYGLGVWGQGTLVTVSS SEQ ID NO: 63 Anti-CD20 2C6 VL EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSG TDFTLTISSLEPEDFAVYYCQQRSNWPLTFGGGTKVEIK
Claims
1. 1. A modified T cell receptor (TCR), comprising: the TCR comprises a TCR alpha chain and a TCR beta chain, and at least one OX40 is attached to the C-terminus of at least one of the TCR alpha chain and the TCR beta chain; the TCR alpha chain comprises a first target binding region and a first constant region, and the TCR beta chain comprises a second target binding region and a second constant region; the first and / or second target binding region is an antigen binding region; Modified T cell receptors.
2. The antigen-binding region comprises: i) antibody, ii) a receptor, or iii) Ligand The modified T cell receptor of claim 1 .
3. The modified T cell receptor of claim 1 or 2, wherein at least one native endodomain of the TCR alpha and beta chains is deleted.
4. The modified T cell receptor of claim 3, wherein the OX40 is linked directly or via a linker to the C-terminus of at least one of the TCR alpha and TCR beta chains from which the native endodomain has been deleted.
5. The linker is (G 4 S) n, wherein n represents an integer from 1 to 10.
6. The modified T cell receptor of claim 5 , wherein n is 3.
7. The modified T cell receptor of any one of claims 1 to 5, wherein at least one OX40 is attached to the C-terminus of only one of the TCR alpha and beta chains.
8. The modified T cell receptor of claim 7, wherein at least one OX40 is attached to the C-terminus of a TCRα chain.
9. The modified T cell receptor of claim 8, wherein the native endodomain of the TCRα chain is deleted.
10. The modified T cell receptor of claim 9, wherein the OX40 is linked directly or via a linker to the C-terminus of the TCR alpha chain from which the native endodomain has been deleted.
11. The linker is (G 4 S) n, wherein n represents an integer from 1 to 10.
12. The modified T cell receptor of claim 11, wherein n is 3.
13. The modified T cell receptor of claim 7, wherein at least one OX40 is attached to the C-terminus of a TCRβ chain.
14. The modified T cell receptor of claim 13, wherein the native endodomain of the TCR β chain is deleted.
15. The modified T cell receptor of claim 14, wherein the OX40 is linked directly or via a linker to the C-terminus of the TCR beta chain from which the native endodomain has been deleted.
16. The linker is (G 4 S) n, wherein n represents an integer from 1 to 10.
17. The modified T cell receptor of claim 16, wherein n is 3.
18. The modified T cell receptor of any one of claims 1 to 5, wherein at least one OX40 is attached to the C-terminus of each of the TCR alpha and beta chains.
19. The modified T cell receptor of claim 18, wherein the native endodomains of each of the TCR alpha and TCR beta chains have been deleted.
20. The modified T cell receptor of claim 19, wherein the OX40 is connected directly or via a linker to the C-terminus of the TCR alpha and TCR beta chains, each of which has a deleted native endodomain.
21. The linker is (G 4 S) n, wherein n represents an integer from 1 to 10.
22. 22. The modified T cell receptor of claim 21 , wherein n is 3.
23. The modified T cell receptor of any one of claims 1 to 22, wherein 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more OX40 are attached to the C-terminus of at least one of the TCR alpha and TCR beta chains.
24. 24. The modified T cell receptor of any one of claims 1 to 23, wherein the first constant region is a native human TCR alpha chain constant region or a native mouse TCR alpha chain constant region.
25. The modified T cell receptor of any one of claims 1 to 24, wherein the first constant region is a modified TCR alpha chain constant region.
26. 26. The modified T cell receptor of claim 25, wherein the modified TCR alpha chain constant region is derived from a mouse TCR alpha chain constant region in which the amino acid at position 48, threonine (T), is mutated to cysteine (C).
27. The modified T cell receptor described in claim 25, wherein the modified TCR α chain constant region is derived from a mouse TCR α chain constant region in which the amino acid at position 112, serine (S), is mutated to leucine (L), the amino acid at position 114, methionine (M), is mutated to isoleucine (I), and the amino acid at position 115, glycine (G), is mutated to valine (V).
28. The modified T cell receptor of claim 25, wherein the modified TCR alpha chain constant region is derived from a mouse TCR alpha chain constant region, in which the amino acid E at position 6 is replaced with D, the K at position 13 is replaced with R, and the amino acids at positions 15 to 18 are deleted.
29. 26. The modified T cell receptor of claim 25, wherein the modified TCR alpha chain constant region is derived from a mouse TCR alpha chain constant region, and the amino acid at position 48, threonine (T), is mutated to cysteine (C), the amino acid at position 112, serine (S), is mutated to leucine (L), the amino acid at position 114, methionine (M), is mutated to isoleucine (I), and the amino acid at position 115, glycine (G), is mutated to valine (V).
30. The modified T cell receptor of claim 25, wherein the modified TCR alpha chain constant region is derived from a mouse TCR alpha chain constant region, and has the amino acid E at position 6 substituted with D, the K at position 13 substituted with R, the amino acids at positions 15 to 18 deleted, the threonine (T) at position 48 mutated to cysteine (C), the serine (S) at position 112 mutated to leucine (L), the methionine (M) at position 114 mutated to isoleucine (I), and the glycine (G) at position 115 mutated to valine (V).
31. The modified T cell receptor of any one of claims 1 to 24, wherein the first constant region comprises an amino acid sequence set forth in one of SEQ ID NOs: 1, 3, 5, 7, 8, 26, 41, 42 and 56.
32. The modified T cell receptor of any one of claims 1 to 31, wherein the second constant region is a native human TCR β chain constant region or a native mouse TCR β chain constant region.
33. The modified T cell receptor of any one of claims 1 to 31, wherein the second constant region is a modified TCR β chain constant region.
34. 34. The modified T cell receptor of claim 33, wherein the modified TCR beta chain constant region is derived from a mouse TCR beta chain constant region in which the amino acid at position 56, serine (S), is mutated to cysteine (C).
35. The modified T cell receptor of claim 33, wherein the modified TCR β chain constant region is derived from a mouse TCR β chain constant region, in which the amino acid R at position 3 is replaced with K, the amino acid T at position 6 is replaced with F, the K at position 9 is replaced with E, the S at position 11 is replaced with A, the L at position 12 is replaced with V, and the amino acids at positions 17 and 21 to 25 are deleted.
36. The modified T cell receptor of claim 33, wherein the modified TCR β chain constant region is derived from a mouse TCR β chain constant region, in which the amino acid serine (S) at position 56 has been mutated to cysteine (C), the amino acid R at position 3 has been substituted with K, the amino acid T at position 6 has been substituted with F, the K at position 9 has been substituted with E, the S at position 11 has been substituted with A, the L at position 12 has been substituted with V, and the amino acids at positions 17 and 21 to 25 have been deleted.
37. The modified T cell receptor of any one of claims 1 to 31, wherein the modified TCR β chain constant region comprises an amino acid sequence set forth in one of SEQ ID NOs: 2, 4, 6, 9, 27, 43 and 57.
38. 38. The modified T cell receptor of any one of claims 1 to 37, wherein the first target binding region and the second target binding region, independently or in combination, specifically bind to a target antigen.
39. The target antigen is selected from the group consisting of phosphatidylinositol proteoglycan 3 (GPC3), CD16, CD64, CD78, CD96, CLL1, CD116, CD117, CD71, CD45, CD71, CD123, CD138, ErbB2 (HER2 / neu), carcinoembryonic antigen (CEA), epithelial cell adhesion molecule (EpCAM), epidermal growth factor receptor (EGFR), EGFR variant III (EGFRvIII), CD19, CD20, CD30, CD40, disialoganglioside GD2, ductal epithelial mucin, gp36, TAG-72, glycosphingolipids, glioma-associated antigen, β-human chorionic gonadotropin, α-fetal globulin (AFP), exogenous lectin-reactive AFP, thyroglobulin, RAGE-1, MN-CA, IX, human telomerase reverse transcriptase, RU1, RU2 (AS), intestinal carboxylesterase, mut hsp70-2, M-CSF, prostase, prostate specific antigen (PSA), PAP, NY-ESO-1, LAGA-1a, p53, prostein, PSMA, survival and telomerase, prostate cancer tumor antigen-1 (PCTA-1), MAGE, ELF2M, neutrophil elastase, ephrin B2, CD22, insulin growth factor (IGF1)-I, IGF-II, IGF1 receptor, mesothelin, major histocompatibility complex (MHC) molecules presenting tumor-specific peptide epitopes, 5T4, ROR1, Nkp30, NKG2D, tumor matrix antigen, ectodomain A (EDA) and ectodomain B (EDB) of fibronectin, A1 domain of tenascin-C (TnC A1), fibroblast-associated protein (fap), CD3, CD4, CD8, CD24, CD25, CD33, CD34, CD133, CD138, Foxp3, B7-1 (CD80), B7-2 (CD86), GM-CSF, cytokine receptors, endothelial factors, major histocompatibility complex (MHC) molecules, BCMA (CD269, TNFRSF17), TNFRSF17 (UNIPROT Q02223), SLAMF7 (UNIPROT Q9NQ25), GPRC5D (UNIPROT Q9NZD1), FKBP11 (UNIPROT Q9NYL4), KAMP3, ITGA8 (UNIPROT P53708), and FCRL5 (UNIPROT Q9NYL4).
39. The modified T cell receptor of claim 38, wherein the T cell receptor is a cancer associated antigen selected from the group consisting of:
40. 40. The modified T cell receptor of any one of claims 1 to 39, wherein the first target binding region comprises a heavy chain variable region of an antibody that specifically binds to a target antigen and the second target binding region comprises a light chain variable region of the antibody, or the first target binding region comprises a light chain variable region of an antibody that specifically binds to a target antigen and the second target binding region comprises a heavy chain variable region of the antibody.
41. i) a first target binding region comprises a heavy chain variable region amino acid sequence as set forth in SEQ ID NO:50, and a second target binding region comprises a light chain variable region amino acid sequence as set forth in SEQ ID NO:51, or a first target binding region comprises a light chain variable region amino acid sequence as set forth in SEQ ID NO:51, and a second target binding region comprises a heavy chain variable region amino acid sequence as set forth in SEQ ID NO:50; or ii) the first target binding region comprises the heavy chain variable region amino acid sequence set forth in SEQ ID NO:54 and the second target binding region comprises the light chain variable region amino acid sequence set forth in SEQ ID NO:55, or the first target binding region comprises the light chain variable region amino acid sequence as set forth in SEQ ID NO:55 and the second target binding region comprises the heavy chain variable region amino acid sequence as set forth in SEQ ID NO:54; The modified T cell receptor of any one of claims 1 to 40, whereby the modified T cell receptor specifically binds to CD19.
42. 40. The modified T cell receptor of any one of claims 1 to 39, wherein the first target binding region comprises a single chain antibody or a single domain antibody that specifically binds to a target antigen, and / or the second target binding region comprises a single chain antibody or a single domain antibody that specifically binds to a target antigen.
43. The method of claim 43, wherein the first target binding region and / or the second target binding region comprises a single chain antibody comprising a heavy chain variable region amino acid sequence set forth in SEQ ID NO:50 and a light chain variable region amino acid sequence set forth in SEQ ID NO:51; and / or ii) the first target binding region and / or the second target binding region comprises a single chain antibody comprising a heavy chain variable region amino acid sequence set forth in SEQ ID NO:54 and a light chain variable region amino acid sequence set forth in SEQ ID NO:55; The modified T cell receptor of claim 42, whereby the modified T cell receptor specifically binds to CD19.
44. 44. The modified T cell receptor of claim 42 or 43, wherein the single chain antibody comprises a heavy chain variable region and a light chain variable region linked by a linker.
45. The linker (G 4 45. The modified T cell receptor of claim 44, wherein:
46. 46. The modified T cell receptor of claim 45, wherein n is 1 or 3.
47. 43. The modified T cell receptor of claim 42, wherein the first target binding region and the second target binding region bind to the same target antigen.
48. 48. The modified T cell receptor of claim 47, wherein the first target binding region and the second target binding region bind to different regions of the same target antigen.
49. 43. The modified T cell receptor of claim 42, wherein the first target binding region and the second target binding region bind to different target antigens.
50. 50. An isolated therapeutic immune cell comprising the modified T cell receptor of any one of claims 1 to 49.
51. 51. The therapeutic immune cell of claim 50, which is a T cell or a NK cell.
52. 52. A pharmaceutical composition comprising the therapeutic T cells of claim 50 or 51 and a pharma- ceutically acceptable carrier.
53. 53. Use of a therapeutic T cell according to claim 50 or 51 or a pharmaceutical composition according to claim 52 in the preparation of a medicament for treating a disease in a subject.
54. 54. The use according to claim 53, wherein the disease is cancer.
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