Systems and methods for sample analysis

Abstract

Disclosed are sample analysis systems and methods using an assay surface, an assay processing unit (APU), an assay processing system (APS), and a laboratory system. The assay surface includes a sample processing component with multiple regions, including at least one wash region and at least one storage region configured to hold multiple solid supports movable through the region under magnetic force, and a detection component configured to receive the solid supports. The APU includes an assay surface receiving component, a magnetic element configured to generate a movable magnetic field, and one or more processors configured to move the magnetic field. The APS includes one or more assay surfaces and an APU. The laboratory system includes one or more APSs and a controller for parallel processing. Disclosed are sample processing and detection methods that reduce sample volume, shorten processing time, and / or increase sensitivity.

Description

[Technical Field]

[0001] CROSS-REFERENCE TO RELATED APPLICATIONS This application claims the benefit of U.S. Provisional Patent Application No. 63 / 017,564, filed April 29, 2020, which is incorporated herein by reference in its entirety. [Background technology]

[0002] Subject matter of the present disclosure The subject matter of the present disclosure relates to devices, systems, and methods for the preparation, detection, and analysis of analytes of interest in samples with increased sensitivity and reduced processing time.

[0003] 2. Description of Related Art Methods and devices that can accurately analyze one or more analytes of interest in a sample can be beneficial in applications involving diagnostics, prognosis, environmental assessment, food safety, detection of chemical or biological agents, etc. Such methods and devices can be configured for accuracy, precision, and / or sensitivity, and to allow individual samples to be analyzed in shorter times and with a reduced instrumentation footprint.

[0004] Sample preparation techniques in systems for sample analysis can include, for example, but are not limited to, preparing a sample by combining the sample with reagents and / or enzymes in a reaction vessel. In known commercial laboratory systems for sample analysis, sample processing times can require up to 20 minutes or more to prepare a sample for detection and analysis. The duration of sample preparation time may be at least partially due to the lack of suitable automated systems for preparing a variety of samples to perform a wide variety of assays. The volume of the sample and / or the amount of reagents used to obtain a signal suitable for detection may also affect sample preparation time. In addition, achieving a suitable concentration of analyte within the sensitivity and detection range of conventional detection systems and methods may involve increased incubation or amplification times, further increasing the time to detect the analyte of interest.

[0005] Techniques for sample detection in systems for sample analysis can include using or incorporating analog detection systems and methods. The sensitivity and detection range of such analog systems and methods can be factors that determine the sample size and / or processing time used to achieve a suitable concentration of analyte within the sensitivity and detection range of the sample detection device. Therefore, there is interest in methods and devices for sample detection that reduce processing time and increase detection sensitivity.

[0006] It would also be beneficial for methods and devices for sample detection to be able to prepare samples in smaller volumes and / or with reduced sample processing times. Additionally, it would be beneficial for methods and devices for sample detection to automate the sample processing and detection process and provide for sensitive detection of analytes of interest in samples for use in a laboratory environment, for example, but not limited to, a clinical or point-of-care laboratory environment.

[0007] Thus, there remains an opportunity for methods and devices for sample detection that can achieve increased throughput, at least in part, due to reduced sample preparation time and / or increased sensitivity of sample processing and detection systems. Summary of the Invention

[0008] Systems, devices, and methods for analyzing analytes of interest in a sample are disclosed herein. According to one aspect of the present disclosure, an assay surface (AS) for analyzing analytes of interest in a sample and a method for analyzing analytes of interest using the AS are disclosed herein. According to another aspect of the present disclosure, an assay processing unit (APU) for performing sample processing and analyte detection on the assay surface and a method for analyzing analytes of interest using the APU are disclosed herein. According to another aspect of the present disclosure, an assay processing system (APS) for analyzing analytes of interest in a sample and a method for analyzing analytes of interest using the APS are disclosed herein. According to another aspect of the present disclosure, a laboratory system for analyzing one or more analytes of interest in multiple samples and a method for using the laboratory system are disclosed herein. According to another aspect of the present disclosure, a laboratory system having shorter processing times and / or higher throughput and a method for using such a laboratory system are disclosed.

[0009] According to one aspect of the present disclosure, an assay surface (AS) can include a sample processing component configured to process a sample for detection, the sample processing component including a plurality of sample preparation areas including at least one wash area configured to hold a volume of liquid and at least one storage area configured to hold a plurality of solid supports, the plurality of solid supports being movable through the plurality of sample preparation areas under magnetic force; and a detection component configured to receive the plurality of solid supports by magnetic force and to detect the presence of or determine the level or concentration of an analyte.

[0010] Additionally or alternatively, the multiple solid supports can be magnetic or paramagnetic microparticles or beads, and can specifically bind to the analyte of interest or at least one reagent or conjugate. Additionally or alternatively, the sample processing component can further include multiple solid supports in at least one storage area. Additionally or alternatively, the sample processing component can further include at least one mixing area configured to mix the multiple solid supports, the analyte of interest, and at least one reagent or conjugate. Additionally or alternatively, the sample processing component can further include at least one reagent or conjugate in the at least one mixing area. Furthermore, the at least one mixing area can have a volume of about 25 μL or less.

[0011] Additionally or alternatively, the at least one reagent may be selected from the group consisting of a detectable label, a binding member, a dye, a surfactant, a diluent, and combinations thereof. Further, the binding member may comprise a receptor or an antibody.

[0012] Additionally or alternatively, the at least one wash area can be configured to wash away any molecules not bound to any solid support, and further, the at least one wash area has a volume of about 10 μL or less.

[0013] Additionally or alternatively, the assay surface can include a plurality of channels, each of the plurality of channels being between the first sample preparation region and the second sample preparation region. Additionally or alternatively, the assay surface can include a plurality of stop elements, the assay surface including a plurality of stop elements, at least one of the plurality of stop elements being between the first sample preparation region and the second sample preparation region. Additionally or alternatively, upon removal of at least one stop element, the volume of liquid in the first region is fluidly connected to the volume of liquid in the second region. Further, after passing through at least one wash region, the plurality of solid supports are moved into the detection component under magnetic force.

[0014] Additionally or alternatively, the detection component can be configured for optical detection, analog detection, or digital detection. Furthermore, the detection component can include an array of elements, each of which is dimensioned to hold at least one of the plurality of solid supports. Additionally or alternatively, the array of elements can include an array of nanowells. Additionally or alternatively, the detection component can include a region containing a volume of an inert liquid, such as oil, configured to seal the array of nanowells. Furthermore, the detection component can be configured to acquire an image of the array of elements after the plurality of solid supports have been transferred into the detection component. Additionally or alternatively, the detection component can be configured for single molecule counting.

[0015] Additionally or alternatively, the assay surface comprises a hydrophobic material. Additionally or alternatively, the assay surface can further comprise multiple volumes of liquid, multiple solid supports, and at least one reagent or conjugate in the multiple sample preparation areas.

[0016] According to aspects of the present disclosure, a method for analyzing an analyte of interest in a sample using an assay surface can include loading at least one volume of liquid into at least one wash region of the assay surface, the assay surface including a sample processing component configured to process the sample for detection, the sample processing component including multiple sample preparation regions, including at least one wash region configured to hold a volume of liquid and at least one storage region configured to hold a plurality of solid supports, the multiple solid supports being movable through the multiple sample preparation regions under magnetic force, and a detection component configured to receive the multiple solid supports by magnetic force and detect the presence of an analyte or determine the level or concentration of the analyte; loading at least one volume of liquid into the detection component; loading a volume of liquid containing the analyte into the sample processing component; and detecting the analyte of interest in the detection component. The assay surface used can include any assay surface disclosed herein.

[0017] Additionally or alternatively, if the sample processing component comprises a plurality of solid supports, the method may further comprise moving the plurality of solid supports under magnetic force through a plurality of sample preparation regions into the detection component prior to detecting the analyte of interest in the detection component.

[0018] Additionally or alternatively, the method further includes loading a plurality of solid supports onto the sample processing component and moving the plurality of solid supports under magnetic force through a plurality of sample preparation regions into the detection component prior to detecting the analyte of interest in the detection component.

[0019] According to another aspect of the present disclosure, disclosed herein is an assay processing unit (APU) for performing sample processing and analyte detection on an assay surface comprising a sample processing component and a detection component. The APU can include an assay surface receiving component configured to receive and hold the assay surface, a magnetic element configured to generate a magnetic field, the magnetic field being movable along the assay surface when received by the receiving component, and one or more processors configured to move the magnetic field to urge at least one solid support disposed on the assay surface through at least one volume of liquid in at least one region of the sample processing component to the detection component of the assay surface using the magnetic field.

[0020] Additionally or alternatively, the magnetic element can be a magnet. Additionally or alternatively, the APU can include a sliding element, e.g., a motor, configured to move the magnetic element, under the control of one or more processors, along a horizontal direction of a plane defined by the upper surface of the assay surface when received by the receiving component. Additionally or alternatively, the APU can include a drive element, e.g., a motor or a string, configured to move the magnetic element, under the control of the processor, in a direction perpendicular to the plane defined by the upper surface of the assay surface when received by the receiving component. Additionally or alternatively, the magnetic element can include an electromagnet configured to generate a moving magnetic field. Additionally or alternatively, the APU can include a mixing dynamics element, e.g., a vibration motor or an electromagnet, controlled by one or more processors, configured to mix at least one volume of liquid in at least one region of the assay surface when received by the receiving component at a predetermined frequency. Additionally or alternatively, the one or more processors can cause a detection component of the assay surface to acquire an image of the detection component when received by the receiving component.

[0021] According to aspects of the present disclosure, a method for performing sample processing and analyte detection on an assay surface comprising a sample processing component and a detection component using an APU includes receiving an assay surface in an assay surface receiving component of the APU, generating a magnetic field by a magnetic element of the APU, the magnetic field being movable along the assay surface, and detecting an analyte of interest in a detection component controlled by one or more processors of the APU.

[0022] Additionally or alternatively, if the assay surface comprises multiple solid supports, the method may further comprise, prior to detecting the analyte of interest in the detection component, moving a magnetic field controlled by one or more processors of the APU to urge at least one solid support disposed on the assay surface using the magnetic field through at least one volume of liquid in at least one region of the sample processing component to the detection component of the assay surface.

[0023] Additionally or alternatively, the method can further include loading a plurality of solid supports onto the sample processing component, and prior to detecting the analyte of interest in the detection component, moving a magnetic field controlled by one or more processors of the APU to urge at least one solid support disposed on the assay surface through at least one volume of liquid in at least one region of the sample processing component using the magnetic field to the detection component of the assay surface. The method can be used with any assay surface or APU disclosed herein.

[0024] According to another aspect of the present disclosure, an assay processing system (APS) for the analysis of an analyte of interest in a sample is disclosed. The APS can include one or more assay surfaces, at least one of which includes a sample processing component configured to process a sample for detection, the sample processing component including a plurality of sample preparation areas including at least one wash area configured to hold a volume of liquid and at least one storage area configured to hold a plurality of solid supports, the plurality of solid supports being movable through the plurality of sample preparation areas under magnetic force; and a detection component configured to receive the plurality of solid supports by magnetic force and to detect the presence of or determine the level or concentration of an analyte; and an assay processing unit (APU) comprising: an assay surface receiving component configured to receive and hold the one or more assay surfaces; a magnetic element configured to generate a magnetic field, the magnetic field movable along the at least one assay surface when received by the receiving component; and one or more processors configured to move the magnetic field to urge at least one solid support disposed on the at least one assay surface through at least one volume of liquid in at least one area of ​​the sample processing component using the magnetic field to the detection component of the assay surface.

[0025] Additionally or alternatively, the APS can include any suitable assay surface in accordance with the presently disclosed subject matter. Additionally or alternatively, the APS can include any suitable APU in accordance with the presently disclosed subject matter.

[0026] According to an aspect of the present disclosure, a method of analyzing an analyte of interest in a sample using an assay processing system (APS) comprising an assay surface and an assay processing unit (APU) includes loading at least one volume of liquid into at least one wash area of ​​the assay surface, the assay surface comprising a sample processing component configured to process the sample for detection, the sample processing component including a plurality of sample preparation areas including at least one wash area configured to hold a volume of liquid and at least one storage area configured to hold a plurality of solid supports, the plurality of solid supports being movable through the plurality of sample preparation areas under magnetic force. The method includes loading an assay surface into an assay surface receiving component of the APU, the assay surface receiving component comprising a sample processing component and a detection component configured to receive a plurality of solid supports by magnetic force and to detect the presence of or determine the level or concentration of an analyte; loading at least one volume of liquid into the detection component; loading a volume of liquid containing the analyte into the sample processing component; receiving the assay surface into an assay surface receiving component of the APU; generating a magnetic field by a magnetic element of the APU, the magnetic field being movable along the assay surface; and detecting the analyte of interest in the detection component controlled by one or more processors of the APU. Additionally or alternatively, one or more assay surfaces used in the method can include an assay surface in accordance with the presently disclosed subject matter. Additionally or alternatively, the APU used in the method can include an APU in accordance with the presently disclosed subject matter.

[0027] Additionally or alternatively, when at least one assay surface comprises multiple solid supports, the method further comprises, prior to detecting the analyte, moving a magnetic field controlled by one or more processors of the APU to urge at least one solid support disposed on the assay surface through at least one volume of liquid in at least one region of the sample processing component to a detection component of the assay surface using the magnetic field.

[0028] Additionally or alternatively, the method may further include loading a plurality of solid supports onto the assay surface, and prior to detecting the analyte, moving a magnetic field controlled by one or more processors of the APU to urge at least one solid support disposed on the assay surface through at least one volume of liquid in at least one region of the sample processing component to a detection component of the assay surface using the magnetic field.

[0029] According to another aspect of the present disclosure, a laboratory system for analysis of one or more analytes of interest in a plurality of samples is disclosed. The laboratory system can include one or more assay processing systems (APSs), at least one APS including one or more assay surfaces, at least one assay surface including a sample processing component configured to process samples for detection, the sample processing component including a plurality of sample preparation areas including at least one wash area configured to hold a volume of liquid and at least one storage area configured to hold a plurality of solid supports, the plurality of solid supports being movable through the plurality of sample preparation areas under magnetic force, and a detection component configured to receive the plurality of solid supports by magnetic force and to detect the presence of or determine the level or concentration of an analyte; and an assay processing unit (APU) including one or more assay surfaces, at least one assay surface including a sample processing component configured to process samples for detection, the sample processing component including at least one wash area configured to hold a volume of liquid and at least one storage area configured to hold a plurality of solid supports, the plurality of solid supports being movable through the plurality of sample preparation areas under magnetic force, and a detection component configured to receive the plurality of solid supports by magnetic force and to detect the presence of or determine the level or concentration of an analyte. an APU comprising an assay surface receiving component configured to receive and hold a surface; a magnetic element configured to generate a magnetic field, the magnetic field being movable along the at least one assay surface when received by the receiving component; and one or more processors configured to move the magnetic field to urge at least one solid support disposed on the at least one assay surface through at least one volume of liquid in at least one region of the sample processing component to a detection component of the assay surface using the magnetic field; and a controller configured to control multiple of the one or more APSs to process corresponding samples substantially in parallel and to detect the presence of or determine the level or concentration of at least one corresponding analyte.

[0030] Additionally or alternatively, one or more APSs can comprise an APS according to the presently disclosed subject matter. One or more assay surfaces can comprise any assay surface disclosed herein. Additionally or alternatively, the APU can comprise any APU disclosed herein.

[0031] Additionally or alternatively, the laboratory system is configured to perform one or more of an HIV p24 assay, an HBsAg assay, a troponin I assay, a TSH assay, a myoglobin assay, a PSA assay, a BNP assay, a PIVKA-II assay, an HIV Ab assay, an estradiol assay, and a COVID-Ag assay. Additionally or alternatively, the laboratory system has a throughput of at least 360 samples per hour. Additionally or alternatively, the laboratory system has a throughput of at least 375 of the samples per hour per square meter footprint of the laboratory system.

[0032] According to aspects of the present disclosure, a method for using a laboratory system includes loading at least one volume of liquid into at least one wash area of ​​an assay surface, the assay surface comprising: a sample processing component configured to process a sample for detection, the sample processing component including a plurality of sample preparation areas including at least one wash area configured to hold a volume of liquid and at least one storage area configured to hold a plurality of solid supports, the plurality of solid supports being movable through the plurality of sample preparation areas under magnetic force; and a detection component configured to receive the plurality of solid supports by magnetic force and to detect the presence of or determine the level or concentration of an analyte. The method can include loading at least one volume of liquid into a sample processing component, loading a volume of liquid containing an analyte into a sample processing component, receiving an assay surface in an assay surface receiving component of the APU, generating a magnetic field by a magnetic element of the APU, the magnetic field being movable along the at least one assay surface, and detecting the analyte of interest in a detection component controlled by one or more processors of the corresponding APU, wherein the controller is configured to control multiple of the one or more APSs to perform corresponding steps on corresponding samples substantially in parallel and to detect the presence of or determine the level or concentration of the at least one corresponding analyte.

[0033] Additionally or alternatively, where at least one assay surface comprises multiple solid supports, the method may further comprise, prior to detecting the analyte, moving a magnetic field controlled by one or more processors of the APU to urge at least one solid support disposed on the assay surface through at least one volume of liquid in at least one region of the sample processing component to a detection component of the assay surface using the magnetic field.

[0034] Additionally or alternatively, the method may further include loading a plurality of solid supports onto at least one assay surface, and, prior to detecting the analyte, moving a magnetic field controlled by one or more processors of the APU to urge at least one solid support disposed on the assay surface through at least one volume of liquid in at least one region of the sample processing component to a detection component of the assay surface using the magnetic field.

[0035] Additionally or alternatively, the method can use an assay surface or APU according to the presently disclosed subject matter. Additionally or alternatively, the method can perform one or more of an HIV p24 assay, an HBsAg assay, a troponin I assay, a TSH assay, a myoglobin assay, a PSA assay, a BNP assay, a PIVKA-II assay, an HIV Ab assay, an estradiol assay, and a COVID-Ag assay. Additionally or alternatively, the method can be used in a laboratory system having a throughput of at least 360 samples per hour. Additionally or alternatively, the method can be used in a laboratory system having a throughput of at least 375 samples per hour per square meter footprint of the laboratory system.

[0036] According to another aspect of the present disclosure, a laboratory system for high-throughput analysis of an analyte of interest in a sample can include a sample processing component configured to process the sample for detection, the sample processing component configured to obtain a level or concentration of the analyte in the sample or a level or concentration of a conjugate indicative of the analyte in the sample suitable for detection, and a detection component configured to detect the presence of the analyte in the sample. The laboratory system can have a time-to-result of less than 6 minutes, or a time-to-result in the range of 3-5 minutes, or a time-to-result in the range of 3-7 minutes. Additionally or alternatively, the laboratory system can have a throughput of at least about 360 samples per hour. Additionally or further alternatively, the laboratory system can have a throughput of at least about 375 samples per hour per square meter footprint of the laboratory system, or a throughput in the range of 375-600 samples per hour per square meter footprint of the laboratory system.

[0037] Also provided are methods for high-throughput analysis of an analyte of interest in a sample. Such methods include processing the sample for detection, which involves obtaining a level or concentration of the analyte in the sample, or a level or concentration of a conjugate indicative of the analyte in the sample, suitable for detection, and detecting the presence of the analyte in the sample. Processing the sample and detecting the presence of the analyte in the sample is completed in less than 6 minutes, or within 3 to 5 minutes, or within 3 to 7 minutes per sample. Additionally or alternatively, processing the sample and detecting the presence of the analyte in the sample is completed for at least about 360 samples per hour. Additionally or further alternatively, processing the sample and detecting the presence of the analyte in the sample is completed for at least about 375 of the samples per hour per square meter footprint of the laboratory system, or within 375 to 600 samples per hour per square meter footprint of the laboratory system. [Brief explanation of the drawings]

[0038] [Figure 1] FIG. 1 illustrates an exemplary assay surface for sample analysis, including a sample processing component and a detection component, in accordance with the subject matter of the present disclosure. [Figure 2] 1 illustrates an exemplary embodiment of a detection component in accordance with the subject matter of this disclosure. [Figure 3] 1 is a chart illustrating exemplary noise level performance of analog and digital detection systems for purposes of comparison and validation of the presently disclosed subject matter. [Figure 4] 1 is a chart illustrating exemplary sensitivity characteristics of an exemplary assay surface having a digital detection component in accordance with the presently disclosed subject matter compared to a system using analog detection. [Figure 5A] 1 is a chart illustrating exemplary sensitivity characteristics of an exemplary assay surface having a digital detection component in accordance with the presently disclosed subject matter compared to a system using analog detection. [Figure 5B] 1 is a chart illustrating exemplary sensitivity characteristics of an exemplary assay surface having a digital detection component in accordance with the presently disclosed subject matter compared to a system using analog detection. [Figure 5C] 1 is a chart illustrating exemplary sensitivity characteristics of an exemplary assay surface having a digital detection component in accordance with the presently disclosed subject matter compared to a system using analog detection. [Figure 5D] 1 is a chart illustrating exemplary sensitivity characteristics of an exemplary assay surface having a digital detection component in accordance with the presently disclosed subject matter compared to a system using analog detection. [Figure 6] 10 is a chart illustrating additional data regarding exemplary sensitivity performance of performing an HIV p24 assay using an exemplary assay surface having a digital detection component for sample analysis in accordance with the presently disclosed subject matter compared to a system using analog detection. [Figure 7A]1 is a chart illustrating exemplary sensitivity and dynamic range characteristics of an exemplary assay surface having a digital detection component for sample analysis in accordance with the presently disclosed subject matter for performing an estradiol assay compared to a system using analog detection. [Figure 7B] 1 is a chart illustrating exemplary sensitivity and dynamic range characteristics of an exemplary assay surface having a digital detection component for sample analysis in accordance with the presently disclosed subject matter for performing an estradiol assay compared to a system using analog detection. [Figure 7C] 1 is a chart illustrating exemplary sensitivity and dynamic range characteristics of an exemplary assay surface having a digital detection component for sample analysis in accordance with the presently disclosed subject matter for performing an estradiol assay compared to a system using analog detection. [Figure 8] 1 is a chart illustrating exemplary sensitivity and processing time characteristics of an exemplary assay surface having digital detection components in accordance with the presently disclosed subject matter compared to a system using analog detection. [Figure 9] 1 is a chart illustrating intensity profiles during an enzymatic reaction using an exemplary assay surface for sample analysis according to the presently disclosed subject matter. [Figure 10] 1A-1C illustrate exemplary detection techniques for assay surfaces for sample analysis in accordance with the subject matter of the present disclosure. [Figure 11A] 1 is a chart illustrating exemplary dynamic range characteristics of an exemplary assay surface for sample analysis using digital detection in accordance with the presently disclosed subject matter compared to a system using analog detection. [Figure 11B] 1 is a chart illustrating exemplary dynamic range characteristics of an exemplary assay surface for sample analysis using digital detection in accordance with the presently disclosed subject matter compared to a system using analog detection. [Figure 12] 1 illustrates an exemplary assay surface in plan view for use with an assay processing unit (APU) for sample analysis in accordance with the subject matter of the present disclosure. [Figure 13] 1A-1C illustrate the movement of microparticles or beads through a volume of liquid using a moving magnetic field in an exemplary assay surface in accordance with the presently disclosed subject matter. [Figure 14] 1 is an image showing an alternative embodiment of an assay surface for use with an assay processing unit (APU), assay processing system (APS), or laboratory system for sample analysis in accordance with the subject matter of the present disclosure. [Figure 15] 10A-10C illustrate alternative embodiments of assay surfaces for use with an APU, APS, or laboratory system for sample analysis in accordance with the subject matter of the present disclosure. [Figure 16A] 1 is a chart illustrating details of an exemplary washing process on an assay surface for purposes of comparison with systems using conventional sample preparation components. [Figure 16B] 1 is a chart illustrating details of an exemplary washing process on an assay surface for purposes of comparison with systems using conventional sample preparation components. [Figure 17] 1 is a chart illustrating characteristics of an exemplary assay surface for sample analysis in accordance with the presently disclosed subject matter compared to conventional systems for sample analysis. [Figure 18] 1 is a chart illustrating details of an exemplary laboratory system using one or more assay surfaces for sample analysis in accordance with the presently disclosed subject matter as compared to conventional systems for sample analysis. [Figure 19] FIG. 1 illustrates additional details of an exemplary APU of an exemplary laboratory system for sample analysis in accordance with the disclosed subject matter. [Figure 20] 10A-10C illustrate alternative embodiments of assay surfaces for sample analysis in accordance with the subject matter of the present disclosure. [Figure 21] FIG. 1 illustrates an exploded view of an exemplary assay processing system (APS) having an APU and an exemplary assay surface for sample preparation and detection. [Figure 22] FIG. 22 illustrates a side view of the exemplary APS for sample preparation and detection of FIG. 21. [Figure 23] 22 illustrates an exemplary washing technique in a washing region of an exemplary assay surface using the exemplary APS of FIG. 21. [Figure 24A] FIG. 10 illustrates the assembly of an alternative embodiment of an assay surface including multiple stop elements. [Figure 24B] FIG. 10 illustrates the assembly of an alternative embodiment of an assay surface including multiple stop elements. [Figure 24C] FIG. 10 illustrates the assembly of an alternative embodiment of an assay surface including multiple stop elements. [Figure 24D] FIG. 10 illustrates the assembly of an alternative embodiment of an assay surface including multiple stop elements. [Figure 25] FIG. 10 illustrates an alternative embodiment of an assay surface that includes multiple stop elements. [Figure 26] 22 is a chart illustrating the washing efficiency of an HIV Ag p24 assay using the exemplary washing technique in the exemplary APS of FIG. 21 compared to the King-Fisher washing technique in accordance with the presently disclosed subject matter. DETAILED DESCRIPTION OF THE INVENTION

[0039] Reference will now be made in detail to various exemplary embodiments of the presently disclosed subject matter, which are illustrated in the accompanying drawings, the structure and corresponding methods of operation of the presently disclosed subject matter being described in conjunction with a detailed system description.

[0040] The systems and methods presented herein can be used to detect analytes of interest in samples, including, but not limited to, samples for analysis in a laboratory setting. By way of example and not limitation, samples can include, for example, blood, plasma, serum, saliva, sweat, urine samples, or any other sample suitable for analysis using the systems and techniques described herein. As embodied herein, the systems and techniques for sample analysis described herein can analyze a single sample in about 5 minutes or less. Additionally or alternatively, as embodied herein, the systems and techniques for sample analysis described herein can have a throughput of at least about 360 samples per hour, more preferably at least about 375 samples per square meter per hour, or in the range of about 375-600 samples per square meter per hour.

[0041] According to aspects of the presently disclosed subject matter, an exemplary sample analysis system is provided along with an exemplary method for sample analysis. The exemplary sample analysis system and method can use exemplary assay surfaces, assay processing units (APUs), assay processing systems (APSs), and laboratory systems for sample processing and detection. For example, as embodied herein, the exemplary sample analysis system and method can be used to perform any type of assay, including, but not limited to, immunoassays such as sandwich immunoassays (e.g., monoclonal-polyclonal sandwich immunoassays), including enzyme detection (e.g., enzyme immunoassays (EIAs) or enzyme-linked immunosorbent assays (ELISAs)), competitive inhibition immunoassays (e.g., forward and reverse), enzyme-multiplied immunoassay techniques (EMITs), competitive binding assays, bioluminescence resonance energy transfer (BRET), one-step antibody detection assays, homogeneous assays, heterogeneous assays, capture-on-the-fly assays, or any other immunoassays.

[0042] For purposes of illustration and not limitation, as embodied herein, a detectable label, such as one or more fluorescent labels or tags, can be attached to the analyte for detection. Additionally or alternatively, other detectable labels can be attached to the detection antibody, such as one or more labels or tags attached by a cleavable linker that can be cleaved, for example, chemically or by photocleavage.

[0043] For purposes of illustration and not limitation, "beads," "particles," and "microparticles" are used interchangeably herein to refer to substantially spherical solid supports. "Magnetic beads" and "paramagnetic beads" refer to substantially spherical solid supports that can be accelerated under magnetic force. For purposes of illustration and not limitation, "chips," "reaction chips," and "sample chips" are used interchangeably herein to refer to assay surfaces for the analysis of analytes of interest in a sample in accordance with the presently disclosed subject matter.

[0044] FIG. 1 illustrates an exemplary sample assay surface (100) in accordance with the presently disclosed subject matter. As disclosed herein, an exemplary system for sample analysis generally includes two components: a sample processing component (110) and a detection component (120). The sample processing component (110) can be configured to prepare the sample for analysis and / or detection, which can include, for example, but not limited to, purifying the sample of interest, isolating an analyte of interest in the sample, and / or combining the sample with a reactive element, such as a conjugate, enzyme, reagent, diluent, microparticle, or other element used to perform the analysis and / or detection of interest. By way of example, and not limitation, the sample processing component (110) can be configured to process an analyte of interest in the sample, or a detectable component of the sample, such as a conjugate, to have a level or concentration suitable for detection by the assay surface (100). The detection component (120) is configured to detect or analyze the analyte of interest in the sample. Although the exemplary sample analysis system is described herein using optical-based detection components, any suitable detection components may be used, such as, but not limited to, electrical detection, electrochemical detection, viscoelastic detection, or any other suitable detection technique. When optical detection is used, such optical detection is for illustrative purposes only and may use, but is not limited to, digital detection techniques, analog detection techniques, or a combination of digital and analog detection techniques.

[0045] As embodied herein, the sample processing component (110) can be configured to prepare a sample using any suitable sample preparation technique. By way of example, and not limitation, the sample preparation component can be configured to isolate and / or purify an analyte of interest in a sample. For example, and without limitation, the sample preparation component can include manual pipetting, including, but not limited to, using one or more pipettes to move the sample to a reaction location, combine one or more reactive elements with the sample, and / or wash the sample. Additionally or alternatively, an automated pipetting system can be used to perform any or all sample preparation by the sample preparation component. Additionally or as a further alternative, and as embodied herein, the sample preparation component can be configured to perform sample preparation process steps, by way of example, and not limitation, passing particles or beads through the surface of a liquid and / or through an air-water or oil-water boundary.

[0046] For illustrative purposes, but not limited to, as embodied herein, a heterogeneous format can be used. For example, after a test sample is obtained from a subject, a first mixture can be prepared. As embodied herein, the mixture can include the test sample to be evaluated for an analyte of interest and a first specific binding partner. The first specific binding partner can be combined with any analyte of interest in the test sample to form a first specific binding partner-analyte of interest complex. As embodied herein, the first specific binding partner can be an anti-analyte antibody of interest or a fragment thereof. The order in which the test sample and the first specific binding partner are added to form the mixture can be reversed. As embodied herein, the first specific binding partner can be immobilized on a solid phase. The solid phase used in the immunoassay (e.g., for the first specific binding partner and, optionally, the second specific binding partner) can be any solid phase, such as, but not limited to, a magnetic particle, a bead, a nanobead, a microbead, a nanoparticle, a microparticle, a membrane, a scaffold molecule, a film, a filter paper, a disc, or a chip (e.g., a microfluidic chip).

[0047] For purposes of illustration and not limitation, as embodied herein, sample processing can include, for example, after mixing, incubating the sample and first binding member for a suitable period of time to allow binding interactions between the binding member and the analyte to occur. As embodied herein, the incubation can be in a binding buffer that promotes specific binding interactions. The binding affinity and / or specificity of the first binding member and / or second binding member can be manipulated or modified in the assay by, for example, but not limited to, varying the binding buffer. For example, as embodied herein, binding affinity and / or specificity can be increased or decreased by varying the binding buffer.

[0048] After the mixture containing the first specific binding partner-analyte of interest complex is formed, including before or after any incubation (if performed), any suitable technique can be used to remove any unbound analyte of interest from the complex. For example, but not limited to, the unbound analyte of interest can be removed by washing. For purposes of illustration and not limitation, as embodied herein, the systems and methods of the present disclosure can perform one-step or two-step assay preparation. As embodied herein, the first specific binding partner can be present in excess of any analyte of interest present in the test sample such that all analytes of interest present in the test sample can be bound by the first specific binding partner.

[0049] After removing any unbound analyte of interest, for illustrative purposes and as embodied herein, a second specific binding partner can be added to the mixture to form a first specific binding partner-analyte of interest-second specific binding partner complex. The second specific binding partner can be an anti-analyte of interest (such as an antibody) that binds to an epitope on the analyte of interest that is different from the epitope on the analyte of interest bound by the first specific binding partner. Additionally or alternatively, the second specific binding partner can be labeled with or contain a detectable label (e.g., a fluorescent label, a tag attached by a cleavable linker, or any other suitable label).

[0050] Additionally or alternatively, immobilized antibodies or fragments thereof can be incorporated into immunoassays as embodied herein. The antibodies can be immobilized on any suitable support, such as, but not limited to, magnetic or chromatographic matrix particles, latex particles or surface-modified latex particles, polymers or polymer films, plastics or plastic films, planar substrates, microfluidic surfaces, or pieces of solid substrate material.

[0051] Sample processing can include additional or alternative steps to obtain a level or concentration of an analyte or conjugate, such as an amplification component, suitable for detection. For example, amplification or lysis can be performed, such as, but not limited to, when the assay involves a molecular process. By way of example and not limitation, amplification can be performed using any suitable amplification technique, including isothermal amplification and polymerase chain reaction (PCR) amplification. By way of example only and not limitation, amplification can be performed using transcription-mediated amplification (TMA), recombinase polymerase amplification (RPA), or any suitable isothermal amplification technique.

[0052] Additionally or further alternatively, as embodied herein, the detection component (120) may be configured to detect or analyze an analyte of interest in a sample, including, but not limited to, detecting the presence or absence of the analyte and / or determining the concentration of the analyte in the sample. By way of example, and not limitation, the detection component may perform detection using optical detection, which may include analog detection, digital detection, luminescence detection, fluorescence detection, or any combination of these techniques. Additionally or alternatively, the detection component may be configured to perform single molecule counting.

[0053] The sensitivity of the detection component can affect other characteristics of the sample analysis system, which affect the overall performance of the system, as described further herein. As used herein, the "sensitivity" of the detection component refers to the level or concentration of an analyte of interest in a sample (or conjugate, if used) that can be detected by the detection component (120), where a lower level or concentration that can be detected indicates a higher sensitivity. For example, but not limited to, increasing the sensitivity of the detection component (120) can enable the detection of lower concentrations of the analyte in a sample, which can reduce the time involved in processing the analyte of interest to obtain a concentration of the analyte (or conjugate, if used) suitable for detection, compared to conventional systems.

[0054] Additionally or alternatively, increasing the sensitivity of the detection component can enable detection to be performed using a smaller sample volume, fewer reagents or conjugate materials, fewer particles or beads, or any combination thereof, and to obtain an analyte concentration suitable for detection in a similar or faster time compared to conventional systems. By way of example and not limitation, the reagent can be selected from the group consisting of a detectable label, a binding member, a dye, a surfactant, a diluent, and combinations thereof. The binding member, if used, can be a receptor or an antibody. In this manner, sample preparation time can be improved, at least in part due to the reduced sample manipulation involved and / or improved reaction rates achieved to obtain an analyte concentration suitable for detection using a lower sample volume, fewer reagents or conjugate materials, and / or fewer particles or beads. Thus, the time to perform an assay, the cost of materials used in the assay, and / or the amount of sample material (e.g., bodily fluid or organic matter) collected to perform the assay can be reduced using a detection component with increased sensitivity.

[0055] For purposes of illustration only, and not limitation, additional details of systems and methods for sample analysis in accordance with the subject matter of the present disclosure, including exemplary sample processing and detection components, are described in U.S. Patent Application Publication Nos. 2018 / 0095067, 2018 / 0104694, and 2018 / 0188230, each of which is incorporated herein by reference in its entirety.

[0056] FIG. 2 illustrates an exemplary detection component 120 in accordance with the subject matter of the present disclosure. Referring to FIG. 2, for illustrative purposes, but not limitation, an exemplary digital detection component (200) is shown. As embodied herein, sample processing is performed at (201) to obtain a concentration of analyte (or conjugate, if used) suitable for detection prior to entry into the digital detection component (200). Sample processing can include any combination of the steps described herein. For example, a support medium, including, but not limited to, microparticles, beads, or other labels, can be mixed with the sample. As embodied herein, reagents, including antibodies and coated microparticles, can be combined. The solution can be washed, for example, to remove excess reagent and / or unbound microparticles. Any suitable number of washes can be performed for each wash step, including one, two, or three or more washes, and each wash can be performed in a single chamber or location or between different chambers or locations. For example, but not limited to, as embodied herein, three washes can be performed. A conjugate can be added to bind to the analyte of interest in the sample. For example, but not limited to, the conjugate can include one or more reagents or enzymes selected or configured to react with the analyte of interest to generate a signal for detection by the detection component. The solution to which the conjugate has been added can be washed, for example, to remove excess conjugate that is not bound to the analyte of interest. Any suitable number of washes can be performed for each wash step, including one, two, or three or more washes, and each wash can be performed in a single chamber or location or between different chambers or locations. For example, but not limited to, as embodied herein, three washes can be performed. The microparticles bound to the analyte and conjugate can be added to a substrate for detection. By way of example and not limitation, the substrate can include a detection region.The microparticles can be added to the substrate using any suitable technique, including, but not limited to, pipetting, magnetic force, or dielectrophoresis. As embodied herein, the detection region can comprise one or more nanowells.

[0057] At (200), digital detection is performed. For example, as embodied herein, at (202), microparticles can be moved to a detection region, e.g., an array of nanowells, as embodied herein. The microparticles can be moved to the nanowells using any suitable technique, including, but not limited to, pipetting, magnetic force, or dielectrophoresis. At (203), a hydrophobic liquid, e.g., oil, can be added to seal the nanowells, inter alia, to prevent bead migration or evaporation of aqueous fluid in the nanowells. For illustrative purposes only, the added oil can be mineral oil or any other type of suitable oil. Additionally or alternatively, other suitable hydrophobic liquids can be added to seal the nanowells. Additionally or alternatively, dyes or contrast agents can be added to increase contrast or otherwise improve optical conditions for detection of analytes of interest in the nanowells. Methods of using dyes in signal-generating digital assays are disclosed, for example, but not limited to, in International Patent Application Publication No. WO 2018 / 143478, which is incorporated herein by reference in its entirety, where one or more images of the microparticles are taken and analyzed to determine the presence or absence of an analyte of interest and / or the concentration of the analyte of interest in the sample.

[0058] Digital detection components and methods can significantly increase detection sensitivity in systems for sample analysis compared to systems using analog detection. Thus, detection can be performed using lower concentrations of analyte, which can allow for reduced sample processing time for detection. Additionally or alternatively, detection can be performed using smaller sample volumes, fewer reagent materials, fewer conjugate materials, fewer microparticles, or any combination thereof, which can reduce the cost of running each assay. Thus, as described herein, using lower sample volumes, fewer reagents or conjugate materials, and / or fewer particles or beads can improve sample preparation time, at least in part due to the fewer sample manipulations involved (e.g., faster wash times) and / or improved reaction kinetics achieved to obtain analyte concentrations suitable for detection. Assays using smaller sample volumes and / or reagent materials can be performed using smaller equipment, which can reduce the footprint of laboratory systems for performing the assays, as further described herein. Additionally, or alternatively, increased detection sensitivity can provide additional benefits when used in conjunction with multiplexing. For example, but not by way of limitation, when multiple analytes and corresponding signals are combined into a single multiplexed assay, the noise levels associated with the detection of each analyte signal can be multiplied to obtain the total noise level of the multiplexed system. By increasing the detection sensitivity of each signal detected, the improved sensitivity can be multiplied to further reduce the total noise level of the multiplexed system.

[0059] Digital detection can provide increased sensitivity, at least in part due to a reduction in noise during detection relative to the measured signal, for example, by generating a higher signal-to-noise ratio. Figure 3 is a chart illustrating the detection noise level of an exemplary digital detection system of the presently disclosed subject matter compared to a sample analysis system using analog detection (e.g., the Abbott ARCHITECT™ family of systems) for purposes of illustration and validation of the presently disclosed subject matter. By way of example only and not limitation, the assay illustrated in Figure 3 was performed as follows: For the ARCHITECT™ HIV Ag / Ab Combo Assay (p24 assay) on the ARCHITECT™, 100 μL of a negative sample (as the "0" concentration sample) was applied to a first 18-minute immunoreaction and a second 4-minute immunoreaction. By way of example and not limitation, a wash process may require additional time. For example, as embodied herein, the first immunoreaction can be used to analyze a molecule using microparticles, and the second immunoreaction can be used to detect an antigen using a second antibody. The number of conjugated molecules was calculated from the relative light unit (RLU) value of chemiluminescence. For the digital HIV p24 assay, 100 μL of negative sample (as "0" concentration sample) was applied to the immunoreaction time assay for a total of 18 minutes. The number of conjugated molecules was calculated by counting the digital signal.

[0060] For the ARCHITECT™ HBsAg assay, 75 μL of the negative sample (as the "0" concentration sample) was applied to a total of 22 minutes of immunoreaction time assay (18 minutes of immunoreaction and 4 minutes of enzymatic reaction). The number of conjugate molecules was calculated from the chemiluminescence relative light unit (RLU) value. For the digital HBsAg assay, 75 μL of the negative sample (as the "0" concentration sample) was applied to a total of 18 minutes of immunoreaction time assay. The number of conjugate molecules was calculated by counting the digital signal.

[0061] For the ARCHITECT™ Troponin I assay, 150 μL of negative sample (as the "0" concentration sample) was applied to a total of 8 minutes of immunoreaction time assay (4 minutes of immunoreaction and 4 minutes of enzymatic reaction). For purposes of illustration and not limitation, the washing process may require additional time. The number of conjugated molecules was calculated from the chemiluminescence relative light unit (RLU) value. For the digital Troponin I assay, 100 μL of negative sample (as the "0" concentration sample) was applied to a total of 8 minutes of immunoreaction time assay. The number of conjugated molecules was calculated by counting the digital signal.

[0062] For the ARCHITECT™ TSH assay, 150 μL of negative sample (as the "0" concentration sample) was applied to a total of 22 minutes of immunoreaction time assay (18 minutes of immunoreaction and 4 minutes of enzymatic reaction). For purposes of illustration and not limitation, the washing process may require additional time. The number of conjugated molecules was calculated from the chemiluminescence relative light unit (RLU) value. For the digital TSH assay, 110 μL of negative sample (as the "0" concentration sample) was applied to a total of 18 minutes of immunoreaction time assay. The number of conjugated molecules was calculated by counting the digital signal.

[0063] For the ARCHITECT™ myoglobin assay, 20 μL of negative sample (as the "0" concentration sample) was applied to a total of 8 minutes of immunoreaction time assay (4 minutes of immunoreaction and 4 minutes of enzymatic reaction). For purposes of illustration and not limitation, the washing process may require additional time. The number of conjugated molecules was calculated from the chemiluminescence relative light unit (RLU) value. For the digital myoglobin assay, 20 μL of negative sample (as the "0" concentration sample) was applied to a total of 8 minutes of immunoreaction time assay. The number of conjugated molecules was calculated by counting the digital signal.

[0064] For the ARCHITECT™ PSA assay, 50 μL of negative sample (as the "0" concentration sample) was applied to a total of 22 minutes of immunoreaction time assay (18 minutes of immunoreaction and 4 minutes of enzymatic reaction). For purposes of illustration and not limitation, the washing process may require additional time. The number of conjugated molecules was calculated from the chemiluminescence relative light unit (RLU) value. For the digital PSA assay, 50 μL of negative sample (as the "0" concentration sample) was applied to a total of 18 minutes of immunoreaction time assay. The number of conjugated molecules was calculated by counting the digital signal.

[0065] For the ARCHITECT™ PIVKA-II assay, 30 μL of the negative sample (the "0" concentration sample) was applied to a total immunoreaction time assay of 22 minutes (18 minutes of immunoreaction and 4 minutes of enzyme reaction). For purposes of illustration and not limitation, the washing process may require additional time. The number of conjugate molecules was calculated from the chemiluminescence relative light unit (RLU) value. For the digital PIVKA-II assay, 30 μL of the negative sample (as the "0" concentration sample) was applied to a total immunoreaction time assay of 26 minutes. For example, as embodied herein, during the 26-minute immunoreaction time, 18 minutes can be involved in the first reaction and 8 minutes can be involved in the second reaction, reducing variability in the assay process. The number of conjugate molecules was calculated by counting the digital signal.

[0066] Referring further to Figure 3, the noise level of detection correlates with the number of conjugate molecules. On the left side of the chart, for assays performed by a sample analysis system using analog detection, including HIV p24, HBsAg, troponin I, TSH, myoglobin, PSA, BNP, and PIVKA-II, the noise level is greater than about 79,000 conjugate molecules, ranging from about 79,000 to 560,000 conjugate molecules. On the right side of the chart, for assays performed by a sample analysis system using digital detection, the noise level is less than about 1,800 conjugate molecules, ranging from about 300 to 1,800 conjugate molecules. Thus, a sample analysis system using digital detection can have a noise reduction of greater than 99% compared to a sample analysis system using analog detection.

[0067] 4 illustrates the sensitivity improvement of a sample analysis system using digital detection compared to a sample analysis system using analog detection. For illustrative purposes, and not limitation, for assays for HBsAg, HIV p24, myoglobin, PSA, and HIV Ab, the sample analysis system using digital detection provides a greater than 100-fold improvement in sensitivity compared to a sample analysis system using analog detection. For assays for troponin I and TSH, the sample analysis system using digital detection provides a greater than 10-fold improvement in sensitivity compared to a sample analysis system using analog detection. For assays for PIVKA-II, the sample analysis system using digital detection provides an approximately 5-fold improvement in sensitivity compared to a sample analysis system using analog detection.

[0068] The above data demonstrate that the features of digital detection can be leveraged to improve overall test processing. As described herein, digital detection can be performed using lower concentrations of analyte compared to analog detection, which can allow for reduced time to process the sample to achieve a signal level or concentration suitable for detection. As embodied herein, sample processing can involve reduced total incubation times; for purposes of illustration and not limitation, sample processing can be performed as a single step or, alternatively, can involve two steps, including an immunoreaction time and an enzymatic reaction time, to achieve a total incubation time. Figure 5A illustrates incubation times to achieve various signal-to-noise (S / N) ratios with an exemplary assay surface using digital detection compared to a sample analysis system using analog detection to perform an HBsAg assay. By way of example only and not limitation, incubations were performed as follows: Approximately 10 μL of sample was applied to the digital HBsAg assay. The X-axis indicates the immunoreaction time and the enzymatic reaction time. Sensitivity (S / N) was calculated by dividing the signal from a positive sample by the signal from a negative sample. The sample volume for the equivalent analog detection of the HBsAg assay was 75 μL. As shown in Figure 5A, the assay surface using digital detection can perform the HBsAg assay using a one-step incubation with a 3-minute incubation time, achieving an S / N ratio of 3.2. In comparison, the sample analysis system using analog detection can perform the HBsAg assay using a two-step incubation with an 18-minute immunoreaction time and a 4-minute enzyme reaction time for a total incubation time of 22 minutes, achieving an S / N ratio of 1.8. Therefore, the assay surface using digital detection can achieve an approximately 75% increase in sensitivity compared to the sample analysis system using analog detection, with approximately one-eighth (1 / 8) of the incubation time for the HBsAg assay.

[0069] FIG. 5B illustrates the incubation times achieved by an exemplary assay surface using digital detection compared to a sample analysis system using analog detection to perform an HIV p24 assay. By way of example only and not limitation, incubations were performed as follows: Approximately 10 μL of sample was applied to the digital HIV p24 assay. The X-axis indicates the immunoreaction time and the enzymatic reaction time. Sensitivity (S / N) was calculated by dividing the signal from a positive sample by the signal from a negative sample. The sample volume for an equivalent analog detection HIV Ag / Ab combo assay was 100 μL. As shown in FIG. 5B, the assay surface using digital detection can achieve an S / N ratio of 3.7 using a one-step incubation with a 3-minute incubation time to perform an HIV p24 assay. In comparison, a sample analysis system using analog detection can perform an HIV p24 assay using a two-step incubation with an 18 minute immunoreaction time and a 4 minute enzymatic reaction time for a total incubation time of 22 minutes, achieving a signal-to-noise ratio of 1.6. Thus, an assay surface using digital detection can achieve an increase in sensitivity of approximately 130% in approximately one-eighth (1 / 8) the incubation time for the HIV p24 assay compared to a sample analysis system using analog detection.

[0070] FIG. 5C illustrates the incubation times achieved by various S / N ratios with an assay surface using digital detection compared to a sample analysis system using analog detection to perform a PSA assay. By way of example only and not limitation, incubations were performed as follows: Approximately 10 μL of sample was applied to the digital total PSA assay. The X-axis represents the immunoreaction time and the enzymatic reaction time. Sensitivity (S / N) was calculated by dividing the signal from a positive sample by the signal from a negative sample. The sample volume for an equivalent analog detection total PSA assay was 50 μL. As shown in FIG. 5C, the assay surface using digital detection can perform a PSA assay using a one-step incubation with a 5-minute incubation time to achieve an S / N ratio of 2.5. In comparison, a sample analysis system using analog detection can perform a PSA assay using a two-step incubation with an 18-minute immunoreaction time and a 4-minute enzymatic reaction time for a total incubation time of 22 minutes to achieve an S / N ratio of 1.5. Thus, an assay surface using digital detection can achieve an increase in sensitivity of approximately 67% in approximately one-quarter (1 / 4) of the incubation time for a PSA assay compared to a sample analysis system using analog detection.

[0071] FIG. 5D illustrates the incubation times achieved by an assay surface using digital detection compared to a sample analysis system using analog detection for performing an HIV Ab assay. By way of example only and not limitation, incubations were performed as follows: Approximately 10 μL of sample was applied to the digital HIV Ab assay. The x-axis indicates the immunoreaction time and enzymatic reaction time. Sensitivity (S / N) was calculated by dividing the signal from a positive sample by the signal from a negative sample. The sample volume for the equivalent analog detection HIV Ag / Ab combo assay was 100 μL. As shown in FIG. 5D, the assay surface using digital detection can achieve an S / N ratio of 10.4 when performing an HIV Ab assay using a one-step incubation with a 5-minute incubation time. In comparison, a sample analysis system using analog detection can achieve an S / N ratio of 2.1 when performing an HIV Ab assay using a two-step incubation with an 18-minute immunoreaction time and a 4-minute enzymatic reaction time for a total incubation time of 22 minutes. Thus, an assay surface using digital detection can achieve an approximately 500% increase in sensitivity in approximately one-quarter (1 / 4) of the incubation time for an HIV Ab assay compared to a sample analysis system using analog detection.

[0072] 6 is a chart showing improved sensitivity based on additional data obtained from seroconversion panel evaluation of HIV p24 assays with assay surfaces using digital detection compared to sample analysis systems using analog detection (e.g., Abbott m2000 HIV, Roche HIV RNA CAP / CTM v.1.0, and Abbott HIV Ag / Ab ARCHITECH™ systems). As shown in FIG. 6, the assay surfaces using digital detection have improved sensitivity compared to sample analysis systems using analog detection.

[0073] Digital detection can be configured to provide an increased dynamic range of detection in addition to, or as an alternative to, increased sensitivity compared to sample analysis systems using analog detection. Figures 7A-7B illustrate exemplary calibration curves for an estradiol assay using an exemplary assay surface using digital detection configured for high sensitivity and an assay surface using digital detection configured for high dynamic range compared to sample analysis systems using analog detection. As shown in Figure 7A, the curve labeled "High Sensitivity" illustrates image analysis configured for high sensitivity with a threshold of 100 units of response intensity measured by the detector for digital detection of estradiol. As shown in Figures 7A-7B, the curve labeled "High Dynamic Range" illustrates image analysis configured for high dynamic range with a threshold of 25 units of response intensity measured by the detector for digital detection of estradiol. By comparison, in Figures 7A-7B, the curve labeled "ARCHITECT™" illustrates image analysis with a sample analysis system using analog detection (e.g., Abbott ARCHITECT™). As shown in Figure 7A, the high-sensitivity digital configuration has a greater response at lower concentrations of estradiol compared to ARCHITECT™. As shown in Figures 7A-7B, the high-dynamic-range digital configuration has a greater response at higher concentrations of estradiol compared to ARCHITECT™. Thus, compared to sample analysis systems using analog detection, assay surfaces using digital detection can be configured to have similar sensitivity with a higher dynamic range, or higher sensitivity with a similar dynamic range, or a combination of higher sensitivity and higher dynamic range.

[0074] 7C illustrates an exemplary calibration curve for a competitive assay of estradiol using an assay surface using digital detection compared to a sample analysis system using analog detection. The vertical axis shows the calibration C signal per noise (C / A ratio), which indicates sensitivity for the estradiol assay, with a lower C / A ratio indicating higher sensitivity. As shown in FIG. 7C, after a 2-minute incubation period, the assay surface using digital detection has a C / A ratio of 0.45, which is lower than the sample analysis system using analog detection, which has a C / A ratio of 0.67.

[0075] For purposes of illustration and validation of the presently disclosed subject matter, FIG. 8 shows data from various assays performed with an exemplary assay surface using digital detection compared to a sample analysis system using analog detection (e.g., Abbott ARCHITECT™). For example, but not by way of limitation, a TSH assay was performed. As shown in FIG. 8, the signal-to-noise ratio of the assay surface using digital detection was 28-fold higher than the sample analysis system using analog detection for the TSH assay. The limit of detection (LOD) of the sample analysis system using digital detection was at least 22.9-fold lower than the sample analysis system using analog detection for the TSH assay.

[0076] To achieve a similar limit of detection (LOD) with a similar signal-to-noise ratio, the assay surface using digital detection utilized a 4-minute incubation time compared to a sample analysis system using analog detection, which utilized a 22-minute incubation time. Thus, the digital detection system described herein allows for significantly shorter sample processing times than required to achieve favorable results with analog detection. As shown in Figure 8, for otherwise comparable assays, the assay surface using digital detection has comparable or higher sensitivity and shorter processing times compared to sample analysis systems using analog detection. For example, for those assays tested and measured in Figure 8, the assay surface using digital detection improved detection sensitivity by 11- to 189-fold based on the signal-to-noise ratio.

[0077] According to other aspects of the presently disclosed subject matter, assay surfaces employing digital detection can be configured to have a higher dynamic range of detection in addition to, or as an alternative to, higher sensitivity compared to sample analysis systems employing only analog detection. When the concentration of an analyte of interest in a sample exceeds a threshold value, the detection component can become saturated such that further increases in concentration do not produce a measurable change in the signal detectable by the detection component.

[0078] The increased dynamic range of an assay surface using digital detection can result in various improvements in the assay, including cost and time improvements. For example, various conditions of the assay can be modified to take advantage of the increased dynamic range. By way of example and not limitation, modified assay conditions can include reducing the sample volume, increasing the substrate concentration in the sample, reducing the microparticle or conjugate concentration in the sample, or any combination of such or similar modifications.

[0079] Additionally or alternatively, the configuration of the sample analysis system can be modified to take advantage of the increased dynamic range. By way of example and not limitation, the sample analysis system can be modified to shorten the enzyme reaction time until detection or use merits more precise control of the enzyme reaction signal, or any combination of such or similar modifications.

[0080] FIG. 9 illustrates the change in fluorescence intensity over enzyme reaction time for an exemplary assay. As shown in FIG. 9, during a particular high-concentration assay, as the enzyme reaction increases, there may be little or no change in the detection signal, which may be due to saturation. Thus, if sample detection is performed after a certain amount of incubation, the duration of which may vary depending on the type and conditions of the assay, the fluorescence signal may not provide a measurable difference in intensity as the concentration increases, at which point the detection system may be considered saturated. Therefore, shortening the observation time in the sample analysis system may enable the measurement of intensity differences over a wider range of concentrations over an expanded dynamic range, and images may be taken at any one or more points during the enzyme reaction time to obtain one or more intensities corresponding to the concentration of the analyte of interest in the sample.

[0081] FIG. 10 shows an exemplary modification of an assay surface using digital detection to reduce observation time. For illustrative purposes, and not limitation, referring to FIG. 10, an exemplary detection method (1000) is illustrated. At (1001), oil is added to an analyte solution to form nanochambers for detection. At (1002), a black dye is added to the analyte solution to darken the background and increase contrast for optical detection. At (1003), an optical detection device (e.g., a CCD camera) is focused to resolve an image of the analyte solution, and at (1004), the optical detection device acquires an image of the analyte solution for detection. The time to perform the detection method (1000), from oil addition (1001) to image capture (1004), is approximately 107 seconds.

[0082] With further reference to FIG. 10 , for purposes of illustration and not limitation, an exemplary detection method (1010) in accordance with the subject matter of the present disclosure is illustrated. In (1011), an optical detection device (e.g., a CCD camera) is focused to resolve an image of the analyte solution. In (1012), both the oil and the black solution are added to the analyte solution at once. In (1013), the optical detection device acquires an image of the analyte solution for detection. The time to perform detection method (1010) is approximately 17 seconds, which is approximately six times shorter than detection method (1000). As described herein, shortening the observation time window can increase the dynamic range.

[0083] FIG. 11A illustrates additional details of the expanded dynamic range of an assay surface using digital detection in accordance with the presently disclosed subject matter for an HIV p24 assay. As shown in FIG. 11A, the assay surface using digital detection responds to both low and high concentrations of analyte in an HIV p24 assay, for example, from about 7.5 fg / mL up to 2000 pg / mL, for a dynamic range of about 266,667-fold (e.g., 2000 pg / mL divided by 7.5 fg / mL). For purposes of illustration and comparison with the presently disclosed subject matter, but not by way of limitation, the assay range of the ARCHITECT™ HIV p24 assay is about a 5,000-10,000-fold dynamic range. In conventional systems, the dynamic range can be expanded, for example, but not by way of limitation, by taking a first image at a higher concentration, diluting the sample, and taking a second image at a lower concentration. However, such a dilution process may involve additional processing time and steps to extend the dynamic range.

[0084] 11B illustrates additional details of the expanded dynamic range of an assay surface using digital detection in accordance with the presently disclosed subject matter for a TSH assay. As shown in FIG. 11B, the assay surface using digital detection responds to both low and high concentrations of analyte in a TSH assay, as shown, for example, from about 0.000305 μIU / mL up to 50 μIU / mL, for a dynamic range of about 163,934-fold (e.g., 50 μIU / mL divided by 0.000305 μIU / mL). For purposes of illustration and comparison with the presently disclosed subject matter, but not by way of limitation, the assay range of the ARCHITECT™ TSH assay is from 0.01 μIU / mL to 100 μIU / mL (e.g., a dynamic range of about 10,000-fold), which can be extended to about 500 μIU / mL by, for example, but not by way of limitation, a dilution process.

[0085] According to other aspects of the disclosed subject matter, exemplary assay surfaces are provided for use with exemplary assay processing units (APUs), assay processing systems (APSs), and laboratory systems. The systems and methods for sample analysis can use any suitable components and techniques for sample processing and detection. For example, without limitation, for all or part of the sample processing and detection, a pipette or system of pipettes can be used to perform washing, mixing, or any other steps to form, isolate, purify, or otherwise manipulate an analyte solution, to incubate or combine the analyte solution with a reaction component, and / or to transport the analyte solution to a detection location.

[0086] Additionally or alternatively, all or part of the sample processing and / or detection can be performed using a variety of reaction vessels and automated processes, including automated pipetting systems that use suction or vacuum forces to manipulate analyte solutions, or other automated systems that use other forces, such as magnetic or electrophoretic forces, to manipulate analyte solutions.

[0087] For purposes of illustration and not limitation, referring now to FIG. 12 , an exemplary assay surface (1200) as embodied herein can be used in a sample analysis system in accordance with the presently disclosed subject matter to perform all or part of sample processing and / or migrate analytes to a region for detection within an added magnetic field. For purposes of illustration and not limitation, an assay surface (1200) using magnetic forces as described herein can include a reaction chip made of a hydrophobic material. Alternatively, an assay surface in accordance with the presently disclosed subject matter can be other suitable surfaces for sample preparation and detection. The assay surface (1200) can be configured as a series of regions through which microparticles can be moved by translation of a moving magnetic field, e.g., a moving magnet or electromagnet, parallel to the microparticles to perform the various operations described herein. Each region can be separated by a barrier or other separation mechanism, such as an air-liquid interface, a liquid-immiscible liquid interface (e.g., separating an oil region from another liquid region), a valve, multiple stop elements, or any other suitable separation mechanism.

[0088] For example, without limitation, the assay surface (1200) includes a microparticle (mP or μP) storage area (1210) configured to hold one or more microparticles (or beads). As embodied herein, the microparticles (or beads) may be pre-stored in the storage area (1210). Alternatively, the microparticles (or beads) may be added to the assay surface manually or by an automated pipetting system from a larger reservoir of microparticles. As described herein, the microparticles (or beads) may be magnetic or paramagnetic to facilitate the use of magnetic forces to perform sample analysis. The microparticle storage area (1210) may be configured as a flat surface or may have a volume sized to hold a suitable number of microparticles to perform sample analysis.

[0089] The assay surface (1200) can include a sample / conjugate mixing region (1220) extending from the microparticle storage region (1210). As embodied herein, the sample / conjugate mixing region (1210) can include pre-loaded reagents or conjugates. Additionally or alternatively, the reagents or conjugates can be added to the assay surface manually or by an automated pipetting system from a larger reservoir. The sample / conjugate mixing region (1220) can be configured to contain or receive one or more analytes of interest that bind to one or more microparticles transferred into the sample / conjugate mixing region (1220). For example, but not limited to, a sample can be stored on the assay surface or transferred to the sample / conjugate mixing region by manual or automated pipetting or any other suitable technique. The sample / conjugate mixing region (1220) may be configured as a flat surface or may have a volume sized to hold a suitable number of samples, conjugates, enzymes, or other reagents for use by the assay surface to detect analytes of interest in the sample.

[0090] The assay surface (1200) can include one or more liquid volumes. For example, but not limited to, the assay surface (1200) can include an inert fluid region (1230) extending from the sample / conjugate mixing region (1220). As embodied herein, the inert fluid region (1230) can include, for example, mineral oil or other inert fluid immiscible with the sample, which can facilitate sample droplet formation, increase the stability of the sample droplet shape, and further help keep the sample droplets and microparticles spatially separated from one another. Additionally or alternatively, as embodied herein, the inert fluid region (1230) can be configured to perform a washing function, for example, but not limited to, removing excess aqueous solution from the microparticles as they pass through the mineral oil. Additional or alternative washing steps can be performed to remove other contaminants as described herein. As embodied herein, the mineral oil of the inert fluid region (1230) can be any suitable mineral oil (e.g., Nacalai Tesque Code 23306-84). Mineral oils can include mixtures of liquid hydrocarbons and can be derived from crude oil by distillation and refining. Other suitable oils for use in the inert fluid region (1230) can include fluorinated oils (e.g., FC-40) and organic oils (e.g., grapeseed oil, coconut oil, or theobroma oil).

[0091] The assay surface (1200) can also include, for example, without limitation, one or more additional wash regions (1240, 1250) extending from or in place of the inert fluid region (1230). The wash regions (1240, 1250) can each define a liquid volume having an air-water interface at each end thereof. The wash regions can contain a solution, such as a buffer or any suitable solution, for removing unwanted contaminants or excess materials, such as excess reagents or conjugates not bound to the analyte of interest or any microparticles or beads. Surface tension can act on the microparticles as they move through the air-water interface of the wash regions (1240, 1250) to remove the unwanted contaminants or excess materials.

[0092] The assay surface (1200) can include a detection region (1260) extending from the wash regions (1240, 1250). By way of example and not limitation, as embodied herein, the detection region (1260) can include an array of elements, each sized to hold at least one of a microparticle or a bead. By way of example and not limitation, the array of elements can include an array of nanowells. Each nanowell can be sized to receive a single microparticle for single-molecule detection. Alternatively, the detection region (1260) can be configured as a flat surface.

[0093] The assay surface (1200) can include one or more additional regions extending from the detection region (1260). For example, as embodied herein, the end region (1270) can include an encapsulated inert liquid region for storing an encapsulated inert liquid, such as oil, for use in encapsulating the detection region (1260). The end region (1270) can also include a dye region for storing a dye that darkens the background and increases contrast for detection, which in one embodiment can be premixed with the oil. The end region (1270) can further include a waste region for removing particulates or any other used components from the assay surface (1200) for disposal.

[0094] For purposes of illustration and not limitation, as embodied herein, the assay surface (1200) can have a width of about 10 mm and a length of about 50 mm. Each region can have a width of up to about 6 mm, for example, as embodied herein. The exemplary assay surface (1200) can be used as part of an assay processing system (APS) having an assay processing unit (APU) in a laboratory system in accordance with the subject matter of the present disclosure.

[0095] FIG. 13 illustrates an exemplary movement of microparticles along an assay surface (1200) through volumes of liquid corresponding to the regions. It will be apparent to those skilled in the art that various modifications and variations can be made to the methods and systems disclosed herein. As described herein, at least one moving magnetic field (1301) can be provided to urge microparticles (1305) through volumes of liquid in various regions along the assay surface and into a detection component of the assay surface. The moving magnetic field (1301) can be generated by a magnetic element disposed in any suitable position relative to the assay surface. By way of example, the magnetic element can be disposed above the assay surface, below the assay surface, to the side of the assay surface, or in any other suitable location. By way of example and not limitation, as embodied herein, the at least one moving magnetic field (1301) can be a moving magnet. Alternatively, the moving magnetic field (1301) can be generated by, for example, an electromagnet. For purposes of illustration and not limitation, as embodied herein, the moving magnetic field (1301) is disposed below the assay surface. Alternatively, the moving magnetic field (1301) can be disposed at other suitable locations. As embodied herein, some or all of the surface of the assay surface (1200) can be made of a hydrophobic material to prevent or inhibit undesired movement of liquid between regions. Surface tension can be exerted on the microparticles as they move through, for example, but not limited to, air-liquid or air-oil interfaces in various regions from sample processing to detection.

[0096] 14-15 illustrate alternative embodiments of assay surfaces having various configurations in accordance with the subject matter of the present disclosure. Referring to FIG. 15, assay surface (1500) can include five regions. Microparticles or beads are moved by magnetic force along the length of assay surface (1500), through each region of assay surface (1500), and into detection region (1550). For illustrative purposes only, a magnetic axis is depicted below assay surface (1500) in FIG. 15. Alternatively, magnetic force can be generated by a magnetic element at other suitable locations, such as above assay surface (1500) or by the side of assay surface (1500).

[0097] As shown in Figure 15 and embodied herein, assay surface (1500) can include sample region (1510). Sample region (1510) contains microparticles that are combined with a sample having an analyte (antigen) of interest, for example, by pipetting or any other suitable technique. Alternatively, sample region (1510) can be pre-loaded with microparticles. In sample region (1510), for example, microparticles can bind to a single antigen in the sample as a first binding partner.

[0098] The assay surface (1500) can include a wash region (1520) extending from the sample region (1510). As described herein, a single wash region (1520) is embodied, although additional wash regions can also be included. As described herein, the wash region (1520) can be configured to remove unwanted contaminants and / or unbound analytes from the microparticles.

[0099] The assay surface (1500) can include a conjugate / enzyme region (1530) extending from the wash region (1520). For illustrative purposes, region (1530) can contain a reagent or conjugate, or alternatively, the reagent or conjugate can be added to the region manually or automatically, for example, using a pipettor. In the conjugate / enzyme region (1530), the analyte (antigen) bound to the microparticle can bind to another analyte-specific binding partner as a second binding partner, labeled to generate a signal for detection.

[0100] The assay surface (1500) can include a wash region (1540) extending from the conjugate / enzyme region (1530). As described herein, a single wash region (1540) is embodied, although additional wash regions can also be included. As described herein, the wash region (1540) can be configured to remove unbound conjugate / reagents.

[0101] The assay surface (1500) can include a detection region (1550) extending from the wash region (1540). As embodied herein, the detection region (1550) can be configured as a digital detection region. Alternatively, the detection region (1550) can be configured to perform other suitable detection, such as analog detection. The detection region (1550) can include one or more nanowells configured for detection. Alternatively, the digital detection region can be configured as a flat surface. Additionally or alternatively, for purposes of illustration and not limitation, the detection region (1550) can include other regions where microparticles are detected and / or imaged, including using nanowells, nanopores, fluorescent detection regions, or any other suitable regions for the detection of analytes in an assay. The exemplary assay surfaces described herein can be formed from any suitable material, such as, but not limited to, PTFE sheet or any other suitable material (e.g., cyclic olefin polymer (COP), PMMA, or other hydrophobic materials).

[0102] The exemplary assay surfaces described herein can be used to perform sample processing, including, for example, but not limited to, any of the sample processing steps described herein. Figure 16A illustrates exemplary wash efficiency of an HBsAg assay performed using an assay surface according to the presently disclosed subject matter. For example, but not limited to, 75 μL of a negative sample (recalcified plasma) and HBsAg assay beads were incubated for 18 minutes. After incubation, the beads were attracted and moved on the hydrophobic surface by a moving magnetic field. A wash process was performed by passing the collected beads through a 10 μL buffer droplet using a magnetic field. Up to four washes were performed during the assay. As shown in Figure 16A, a signal percentage of 0.08 was obtained after the first wash. After the second wash, a signal percentage of 0.03 was obtained, which may be suitable for digital detection as described herein. The signal percentage can be considered as the percentage of beads with bright droplets counted from the total number of collected beads, and can be determined, for example, but not limited to, by the following formula: NbD / NtB×100%, where NbD and NtB refer to the number of beads with bright droplets and the total number of collected beads, respectively. Additional washes resulted in smaller changes in the resulting signal percentage. Therefore, two washes may be suitable for performing an assay using an assay surface according to the presently disclosed subject matter, and the total wash time may be about 30 seconds.

[0103] FIG. 16B illustrates exemplary collection efficiencies using an assay surface in accordance with the presently disclosed subject matter. As shown in FIG. 16B, an assay surface in accordance with the presently disclosed subject matter can have a collection efficiency ratio (e.g., number of microparticles remaining after an assay) of greater than 90%, illustrating suitable collection of microparticles using the assay surfaces disclosed herein. Referring to FIG. 16B, the column labeled "- / - / - / - / -" indicates initial, untreated beads (e.g., 100% collection ratio). The column labeled "10 fM / + / - / -" indicates collection ratios of beads with a 75 μL sample assay surface in accordance with the presently disclosed subject matter (e.g., greater than 90% collection ratio). The column labeled "10 fM / - / + / -" indicates collection ratios of beads with 75 μL sample without an assay surface in accordance with the presently disclosed subject matter and without a conjugate (e.g., approximately 90% collection ratio). The column labeled "10 fM / + / + / +" shows the collection rate of beads (e.g., about 90% collection rate) from an HBsAg assay using an assay surface according to the presently disclosed subject matter and having a 75 μL sample to which a conjugate was added with incubation. Thus, a high percentage of microparticles are retained by the assay surface according to the presently disclosed subject matter as they migrate along various regions of the assay surface.

[0104] As described herein, detection according to the presently disclosed subject matter can be performed using smaller sample volumes, fewer reagent materials and volumes, fewer conjugate materials, fewer nanoparticles, or any combination thereof, reducing the cost of performing each assay. Thus, sample preparation time can be improved, at least in part, due to the fewer sample manipulations involved. Smaller sample volumes can also provide certain kinetic improvements for improving sample processing speed, for example, during incubation or amplification reactions, or other reactions performed using such sample volumes. As embodied herein, sample analysis systems using exemplary assay surfaces according to the presently disclosed subject matter can be configured to improve processing times for smaller volumes of sample, conjugates, and / or microparticles.

[0105] The sample processing systems and techniques described herein can be used to perform sample processing of small sample volumes, for example, but not limited to, about 10 μL or less. Alternatively, the sample volume of an exemplary assay surface can be about 10 μL to about 50 μL. Alternatively, the sample volume of an exemplary assay surface can be less than 50 μL. Alternatively, the sample volume of an exemplary assay surface can be less than 75 μL. Alternatively, the sample volume of an exemplary assay surface can be less than 100 μL. Additionally or alternatively, exemplary assay surfaces according to the presently disclosed subject matter can provide faster wash times, including when used with small sample volumes. In comparison, some conventional sample analysis systems may be unsuitable for use with sample volumes less than 100 μL.

[0106] Additionally or alternatively, sample processing can be performed using the sample processing systems and techniques described herein using small wash buffer volumes, for example, but not limited to, about 10 μL or less. Alternatively, the wash buffer volume of an exemplary assay surface can be about 10 μL to about 50 μL. Alternatively, the wash buffer volume of an exemplary assay surface can be less than 50 μL. Alternatively, the wash buffer volume of an exemplary assay surface can be less than 75 μL. Alternatively, the wash buffer volume of an exemplary assay surface can be less than 100 μL. Additionally or alternatively, exemplary assay surfaces according to the presently disclosed subject matter can provide faster wash times, including when used with small sample volumes. In comparison, some conventional sample analysis systems may be unsuitable for use with wash buffer volumes less than 100 μL.

[0107] Additionally or alternatively, the sample processing systems and techniques described herein can be used to perform sample processing using small reagent volumes, for example, but not limited to, about 10 μL or less. Alternatively, the reagent volume of an exemplary assay surface can be about 10 μL to about 50 μL. Alternatively, the reagent volume of an exemplary assay surface can be less than 50 μL. Alternatively, the reagent volume of an exemplary assay surface can be less than 75 μL. Alternatively, the reagent volume of an exemplary assay surface can be less than 100 μL. Additionally or alternatively, exemplary assay surfaces in accordance with the presently disclosed subject matter can provide faster wash times, including when used with small sample volumes. In comparison, some conventional sample analysis systems may be unsuitable for use with reagent volumes less than 100 μL.

[0108] For illustrative purposes, and not by way of limitation, FIG. 17 shows exemplary results of an assay performed by a sample analysis system using an exemplary assay surface in accordance with the presently disclosed subject matter having a 10 μL sample volume compared to an assay performed (according to instructions) by a conventional sample analysis system (e.g., Abbott ARCHITECT™) having a 100 μL sample volume, for purposes of illustration and validation of the presently disclosed subject matter. Alternatively, the exemplary assay surface can have a sample volume less than 100 μL. For example, and not by way of limitation, a conventional HIV p24 assay was performed in a 100 μL sample volume using 25 μL of 9.6 μg / mL conjugate and 25 μL of 800k assay beads within an 18 minute immunoreaction time. For purposes of illustration of the presently disclosed subject matter, but not limitation, an HIV p24 assay was performed in a 10 μL sample volume using an assay surface according to the presently disclosed subject matter, using 3.125 μL of 75 μg / mL conjugate and 3.125 μL of 200k assay beads within a 4 minute immunoreaction time.

[0109] Reducing the sample volume used with conventional systems from 100 μL to 10 μL (e.g., about 10-fold) is expected to result in a corresponding reduction in sensitivity of about 10-fold (e.g., from an S / N of 33 to an S / N of less than 4). However, as shown in FIG. 17 , a configuration using a 10 μL sample volume with an assay surface in accordance with the presently disclosed subject matter achieved an S / N ratio of about 15, comparable to the S / N ratio of about 33 for a conventional system using a 100 μL sample, and which may be suitable for optical detection, including, but not limited to, the analog or digital detection techniques described herein. The S / N ratio achieved using a 10 μL sample volume with an assay surface in accordance with the presently disclosed subject matter may be due, at least in part, to improved kinetics obtained during immune reactions occurring in smaller sample volumes. Providing a reduced sample volume, prepared using a smaller reagent volume, at a concentration suitable for digital detection may enable cost savings for each assay performed using a system for sample analysis in accordance with the presently disclosed subject matter.

[0110] According to another aspect of the presently disclosed subject matter, an exemplary laboratory system, assay processing unit (APU), or assay processing system (APS) can be constructed. For purposes of illustration and not limitation, as embodied herein, exemplary sample analysis systems and methods can utilize the exemplary assay surfaces described herein to achieve high throughput, including, but not limited to, per sample, per sample over time, and per system area (footprint) over time.

[0111] FIG. 18 illustrates additional details of an exemplary laboratory system including multiple APSs disclosed herein compared to conventional sample detection systems (e.g., Abbott Alinity i and Abbott ARCHITECT™ i2000SR) for purposes of illustration and validation of the presently disclosed subject matter. As shown in FIG. 18, by way of example and not limitation, the exemplary laboratory system can achieve an areal throughput of approximately 560 tests per hour per square meter, with a much smaller footprint of 0.96 square meters for the core sample preparation and detection components. By way of example and not limitation, the exemplary laboratory system can include one or more exemplary APSs and a controller configured to control multiple of the one or more APSs to process corresponding samples substantially in parallel and to detect the presence of, or determine the level or concentration of, at least one corresponding analyte. The exemplary laboratory system can process multiple assay surfaces in a packed footprint. By comparison, the Abbott Alinity™ i system and the Abbott ARCHITECT™ i2000SR system have throughputs per area of ​​approximately 140 tests per hour per square meter footprint and 100 tests per hour per square meter footprint, respectively.

[0112] FIG. 19 illustrates additional details of an exemplary embodiment of an exemplary APS for use in an exemplary laboratory system and method for sample analysis having an area-based throughput of approximately 560 tests per hour per square meter footprint in accordance with the presently disclosed subject matter using the assay surfaces shown in FIG. 18 and described herein. By way of example and not limitation, the exemplary laboratory system can include one or more exemplary APSs and a controller configured to control multiple of the one or more APSs to process corresponding samples substantially in parallel and to detect the presence of, or determine the level or concentration of, at least one corresponding analyte. The exemplary laboratory system can process multiple assay surfaces in a packed footprint. By way of example and not limitation, as embodied herein, for example, as shown in FIG. 19 , the exemplary APS can include one or more exemplary assay surfaces and an exemplary assay processing unit (APU). By way of example and not limitation, an exemplary APU may include a control board with one or more processors configured to control operation, LED lights, an optical unit, a CMOS image sensor for detection, an assay surface receiving component, and a magnetic element for generating a magnetic field. By way of example and not limitation, the exemplary processors listed herein may be configured to perform operations using hardware logic, firmware instructions, or software instructions. By way of example and not limitation, the magnetic element may be an electromagnet for generating a moving magnetic field or a magnet operatively connected to a sliding element. By way of example and not limitation, the sliding element may be a motor. Additionally or alternatively, the magnetic element may be disposed in any suitable position relative to the receiving assay surface. As embodied herein, the exemplary APS of FIG. 19 is relatively compact yet performs tests with desired sensitivity in a short period of time, for example, but not limited to, 5.5 minutes.Packaging multiple APSs of FIG. 19 in one instrument as embodied herein, for example, but not limited to, about 52, with a combined footprint of about 0.005 square meters, enables a high throughput instrument as embodied herein, as an exemplary laboratory system with a conventional footprint of about 0.26 square meters.

[0113] For purposes of illustration and not limitation, as embodied herein, an exemplary assay processing system (APS) can include a receiving component as a process path for receiving one or more assay surfaces and processing the assay surfaces to reduce the total time to sample result to less than 6 minutes; alternatively, the time to result can be 3-5 minutes for a one-step assay or 3-7 minutes for a two-step assay. Alternatively, the time to result can be 2-5 minutes. Alternatively, the time to result can be 5-10 minutes. Alternatively, the time to result can be less than 5 minutes. Alternatively, the time to result can be less than 10 minutes. As embodied herein, an exemplary assay surface can enter a one-step assay receiving component of an APS. For purposes of illustration and not limitation, there can be a variety of receiving components (process paths) to accommodate various assay protocols. For example, but not by way of limitation, an exemplary assay surface (1200) or (1500) can be loaded from a storage unit of an exemplary APS. The sample can be added to the assay surface for approximately 10 seconds, for example, by automated or manual pipetting, or any other suitable technique. By way of example and not limitation, the sample, microparticles, or reagents / conjugates can be stored on the assay surface for use or can be added manually or automatically from a reservoir, for example, using pipetting or other suitable techniques. A volume of liquid containing the analyte can be prepared on the assay surface, and various sample processing steps can be performed, including, for example, mixing, washing, and / or incubation steps, including, but not limited to, washing the sample-microparticle complex, adding a conjugate to the sample, and adding a substrate to the sample. Oil can be added to the sample at one station, and a first image can be captured under the control of the APU's processor, which can be used to extend the dynamic range of detection at higher concentrations. The total sample processing time for the above process can be approximately 3.5 minutes.After the first image, an enzyme can be applied to the imaged sample, and the sample can be incubated for an enzyme reaction time to achieve a concentration suitable for digital detection. Multiple images of the incubated sample can be acquired under processor control and used to determine the presence, absence, or concentration of the analyte at lower concentrations. Total sample processing time, from detection of the presence of the analyte in the sample, is less than 6 minutes, and in some embodiments, the time to result can be 3-5 minutes. For illustrative purposes, but not limiting, the following table summarizes an example of a one-step assay process that results in a test time of approximately 5.5 minutes. In the configuration of Figure 19, packaged in multiples of 52 within a single instrument for parallel processing laboratory systems, along with associated sample, reagent, and disposable handling systems, as embodied herein, the total hourly throughput of the one-step assay process is approximately 572 tests per hour, and the single instrument has a footprint of approximately 1 square meter. Additional units can be packaged within the same single equipment footprint to achieve more tests per hour, including 400, 500, or 600 tests per hour, or can be configured to achieve throughputs in the range of 375-600 tests per hour. [Table 1]

[0114] Alternatively, or additionally, for purposes of illustration and not limitation, a two-step assay can be performed on the process pathway. The time to result can be 3-7 minutes. Alternatively, the time to result can be less than 5 minutes. Alternatively, the time to result can be less than 10 minutes. The following table summarizes an example of a two-step assay process that results in a test time of approximately 7 minutes. For purposes of illustration and not limitation, the sample, microparticles, or reagents / conjugates can be stored on the assay surface for use or can be added manually or automatically from a reservoir, for example, using pipetting or other suitable techniques. In the configuration of Figure 19, the exemplary APS, along with associated sample, reagent, and disposable handling systems, are packaged in multiples of 67 within a single instrument in an exemplary laboratory system, and the total hourly throughput of the two-step assay process, as embodied herein, is approximately 570 tests per hour in a single instrument with a footprint of approximately 1 square meter. Additional units can be packaged within the same footprint within a laboratory system to achieve more tests per hour, including 400, 500, or 600 tests per hour, or can be configured to achieve throughputs in the range of 375-600 tests per hour. [Table 2]

[0115] By way of illustration and not limitation, an exemplary laboratory system may be configured to perform one or more of an HIV p24 assay, an HBsAg assay, a troponin I assay, a TSH assay, a myoglobin assay, a PSA assay, a BNP assay, a PIVKA-II assay, an HIV Ab assay, an estradiol assay, a COVID-Ag assay, and other assays.

[0116] FIG. 20 illustrates an exemplary assay surface (2000) of the disclosed systems and methods for preparing and detecting an analyte of interest in a sample. As illustrated, the exemplary assay surface (2000) can include an upper portion (2010) and a lower portion (2020). The upper portion (2010) can cover and seal the lower portion (2020) when preparing and detecting the analyte of interest. For purposes of illustration and not limitation, the exemplary assay surface can include multiple regions and multiple channels in the lower portion (2020), each of which can be arranged in series to define a sample preparation and detection area (2040). As embodied herein, the exemplary assay surface (2000) can include a sample preparation and detection area (2040) having a microparticle storage region (2022), a sample storage region (2024), a sample / conjugate mixing region (2026), one or more wash regions (2028), and a detection region (2032). As embodied herein, the exemplary assay surface (2000) has three wash regions (2028). As embodied herein, the surface of the lower portion (2020) can be made of a hydrophobic material, such as COP.

[0117] For purposes of illustration and not limitation, as embodied herein, the microparticle storage region (2022) can contain a plurality of microparticles. Alternatively, the microparticles can be loaded into the region manually or automatically, for example, using a pipettor, from a microparticle reservoir. As described herein, the microparticles can be magnetic or paramagnetic to facilitate the use of magnetic forces to perform sample analysis and detection. Additionally or alternatively, magnetic or paramagnetic beads or particles can specifically bind to an analyte or reagent / conjugate of interest. The microparticles can move through the region of the exemplary assay surface under magnetic force. For purposes of illustration, the magnetic force can be a magnetic field generated by an exemplary assay processing unit (APU) disclosed herein.

[0118] Additionally or alternatively, the sample storage area (2024) can contain an analyte of interest for preparation and detection in a suitable solution. As embodied herein, the analyte of interest can be, for example, an HIV Ab p24 assay, an HIV1-Ab assay, an HBsAg assay, or a COVID-Ag assay. Alternatively, the analyte of interest can include other analytes.

[0119] By way of example, and not by way of limitation, the sample / conjugate mixing region (2026) can be configured to mix the analyte of interest with microparticles and / or reagents / conjugates. As embodied herein, the reagents or conjugates can be stored in the mixing region (2026). Alternatively, the reagents or conjugates can be loaded into the region manually or automatically from a larger reservoir, for example, using a pipettor. By way of example, and not by way of limitation, as embodied herein, the analyte of interest in an HIV Ab p24 assay can be mixed with paramagnetic beads (800k beads) and an enzymatic nCIAP-anti-p24 conjugate.

[0120] Additionally, if provided, one or more wash regions (2028) can be sized to accommodate one or more wash buffers to remove any unbound analytes of interest. As embodied herein, the wash regions can be used to remove any molecules not bound to the microparticles. An exemplary assay surface (2000) can include any number of wash regions, which, as embodied herein, can include three wash regions. In the exemplary assay described herein, the wash period for each wash region can be approximately 90 seconds.

[0121] By way of example and not limitation, the detection region (2032) can be configured to detect an analyte of interest. The detection region (2032) can be configured for analyte detection using any analyte detection technique described herein. For example, and without limitation, exemplary analyte detection techniques can include one or more of optical detection, analog signal detection, digital signal detection, illumination detection, fluorescence detection, or any combination of these techniques. Additionally or alternatively, the detection region (2032) can be configured to perform single molecule counting. Further, by way of example and not limitation, the detection region can include a plurality of elements, each dimensioned to hold at least one single bead or particle. As embodied herein, the array of elements can include an array of nanowells configured for detection by separating microparticles bound to the analyte of interest into a plurality of nanowells. By way of example and without limitation, as embodied herein, microparticles or beads can be loaded into a plurality of nanowells using magnetic forces. Loading microparticles into multiple nanowells using magnetic forces can improve loading efficiency and accuracy. For purposes of illustration and not limitation, as embodied herein, a majority of an array of nanowells can be loaded with at least one microparticle, which can also improve the efficiency of single molecule detection.

[0122] 21 illustrates a front perspective view of an exemplary assay processing unit (APU) (2100) for preparing and detecting an analyte of interest in a sample using an exemplary assay surface in an assay processing system (APS) according to the subject matter of the present disclosure. For purposes of illustration, and not limitation, as embodied herein, the exemplary APU (2100) can include a processor (2110), a magnetic element (2115), a detection region (2120), an assay surface receiving component (2150), and a detection component (2125). An exemplary APS can include one or more exemplary assay surfaces in the exemplary APU.

[0123] With further reference to FIG. 21 , the processor (2110) may include a control board configured to control operations performed on the assay surface, the detection component (2125), and movement of other components of the exemplary APU (2100). By way of example and not limitation, the processor (2210) may include an Arduino Micro computer system. As embodied herein, the detection component (2125) may include a camera and a light source, such as an LED, positioned to perform optical detection of the analyte of interest. Alternatively, the detection component may include other suitable equipment for other types of detection. As embodied herein, the assay surface (2130) received in the assay surface receiving component (2150) may be the exemplary assay surface (2000) disclosed above. Alternatively, the received assay surface (2130) may be another assay surface.

[0124] For purposes of illustration, and not limitation, the magnetic element (2115) of the exemplary APU can include an electromagnet that generates a moving magnetic field. Alternatively, as embodied herein, the magnetic element (2115) can include a magnet operatively connected to a sliding mechanism (2140). The sliding mechanism (2140) can be controlled by the processor (2110) and can move the magnet horizontally, for example, with a motor. Additionally or alternatively, the magnetic element (2115) can be disposed in any suitable location relative to the received assay surface (2130). For example, the magnetic element (2115) can be below or above the assay surface (2130), or near a side of the assay surface (2130). For purposes of illustration only, FIG. 21 depicts the magnetic element (2115) below the assay surface (2130).

[0125] FIG. 22 illustrates a side view of the exemplary APU (2100) of FIG. 21. As embodied herein, the APU (2100) may include a detection component (2125), a drive element (2210), and a stepper motor (2220) for the sliding mechanism (2140). By way of example and not limitation, the magnetic element (2115) may be an electromagnet that generates a moving magnetic field in a horizontal or vertical direction defined by the top surface of the received assay surface. Alternatively, as embodied herein, the magnetic element (2115) may be a magnet. The drive element (2210) may be operably connected to the magnet to move the magnet in a vertical direction defined by the top surface of the received assay surface. By way of example, the drive element (2115) may be a motor or a string. Additionally or alternatively, the APU can also include a mixing dynamics component, which can include an electromagnet, an ultrasonic mixing element, a ballistic mixing element with a pipettor, or other suitable element for improving mixing frequency. The mixing dynamics component can mix at least one volume of liquid disposed on an assay surface received by the APU and the APS at a predetermined frequency. For purposes of illustration and not limitation, as embodied herein, the mixing dynamics component can be a vibration motor.

[0126] By way of example and not limitation, the detection component (2125) may be configured for detection of the analyte of interest using optical detection and may include, for example, a camera and a light source such as an LED. By way of example and not limitation, as embodied herein, if the magnetic element (2115) is a magnet, the drive element (2210) may be connected to the magnet by a nut and bolt connection, allowing the magnet to move toward and away from the assay surface in a vertical direction perpendicular to a plane defining the top surface of the received assay surface. Alternatively, the magnetic element (2115) may be an electromagnet that generates a moving magnetic field in a vertical direction. As embodied herein, the direction of movement of the magnet is perpendicular to a plane defined by the top surface of the received assay surface (2130).

[0127] 23A and 23B illustrate the movement of multiple microparticles in a droplet in a wash region of an exemplary assay surface under the magnetic force of a magnetic element; for illustrative purposes only, other regions and features of the assay surface described herein are omitted from this schematic diagram. As embodied herein, the exemplary assay surface (2301) can include three wash regions (2310). The magnetic element (2315) can generate a moving magnetic field in a direction perpendicular to a plane defined by the top surface of the assay surface (2301). Additionally or alternatively, the magnetic element (2315) can be disposed in any suitable location, for example, above or below the assay surface (2301), or by a side of the assay surface (2301). As embodied herein, for illustrative purposes, the magnetic element (2315) can be a magnet disposed below the assay surface (2301). The magnet can be connected to a drive element (not shown), for example, a motor. The driving element can move the magnet vertically toward and away from the assay surface. Alternatively, the magnetic element (2315) can be one or more electromagnets that generate a moving magnetic field in the vertical direction. Further, as embodied herein, a droplet (2305) having microparticles is in one of the wash regions. The droplet can contain microparticles that are moved under the magnetic force of the magnetic element (2315).

[0128] As illustrated in FIG. 23B, as embodied herein, when the magnet is moved toward the assay surface (2301), the droplets (2305) carrying the microparticles may be attracted toward the magnet and accumulate relatively closer to the magnet. As the magnet is moved away from the assay surface (2301), the droplets (2305) carrying the microparticles may spread apart relatively farther from each other under less force from the magnet. For purposes of illustration and not limitation, the magnet can be approximately 5 mm away from the lower surface of the assay surface (2301). Alternatively, the moving magnetic field can be generated by an electromagnet without changing the position of the electromagnet. For purposes of illustration and as embodied herein, when the magnet is closest to the assay surface (2301), the distance between the assay surface (2301) and magnet Z1 can be approximately 0 mm. For purposes of illustration, as embodied herein, when the magnet is farthest from the assay surface (2301), the distance between the assay surface (2301) and magnet Z2 may be approximately 5 mm. Further, as embodied herein, for each wash zone, the magnet may be moved up and down approximately four times to improve wash efficiency. Alternatively, the moving magnetic field provided by magnetic element (2315) may be generated by an electromagnet controlled by one or more processors of the APU.

[0129] 24A-24D illustrate an alternative exemplary assay surface having multiple stop elements. As embodied herein, the exemplary assay surface can include an upper portion (2401), a lower portion (2410), and multiple stop elements (2405). As illustrated in FIG. 24A and embodied herein, by way of example and not limitation, the lower portion (2410) can include multiple regions and multiple channels defining a sample preparation and detection region (2440) as disclosed in accordance with the subject matter. For example, channel (2420) is between first region (2422) and second region (2424). By way of example and not limitation, the first region can be configured to store microparticles, and the second region can be configured to store an analyte of interest in a suitable solution. Alternatively, the microparticles or analyte can be loaded manually or automatically from a reservoir. As embodied herein, the surface of the lower portion (2410) can include a hydrophobic material, such as COP, as described herein.

[0130] As illustrated in FIG. 24B, for purposes of illustration and not limitation, multiple stop elements (2405) can be inserted into multiple channels in the lower portion (2410). As illustrated in FIG. 24C, as embodied herein, multiple regions in the lower portion (2410) can contain solutions and droplets for preparation and detection of analytes of interest. Additionally or alternatively, region (2415) can contain multiple microparticles that bind to the analytes of interest. As illustrated in FIG. 24D, the upper portion (2401) can cover the lower portion (2410) and multiple stop elements (2405) to define a reaction region and can be joined to seal the reaction region and protect against unwanted movement of materials into or out of the reaction region.

[0131] By way of example, and not limitation, the plurality of stop elements 2405 can be made of a hydrophobic material, such as rubber. Different compositions or solutions can be stored in multiple regions of the assay surface, and when the plurality of stop elements 2405 are disposed in multiple channels, the plurality of stop elements can prevent or inhibit unwanted migration of the contents of a region to different regions, for example, but not by way of limitation, during shipping, storage, and handling of the assay surface.

[0132] Referring now to Figures 20-22, an exemplary sample preparation and detection system (assay processing system (APS)) and method is disclosed with reference to and using an exemplary assay surface (2000) and an exemplary APU (2100). Alternatively, the APS can include alternative assay surfaces and alternative APUs. For purposes of illustration and not limitation, as embodied herein, the analyte of interest can be an HIV Ag p24 assay. First, a suitable solution is loaded onto the lower portion (2020) of the assay surface (2000). For purposes of illustration and not limitation, as embodied herein, the suitable solution can be a serum sample.

[0133] As embodied herein, the microparticle storage area (2022) can contain paramagnetic beads capable of binding to an HIV Ag assay, e.g., MS 300 beads. Alternatively, the microparticles can be loaded manually or automatically from a reservoir. The sample storage area (2024) can contain an assay for HIV Ag p24 in a suitable solution. The sample / conjugate mixing area (2026) can contain suitable conjugates and reagents for immune and / or enzymatic reactions, e.g., the enzymatic nCIAP-anti-p24 conjugate (1AP / conjugate). Alternatively, the reagents / conjugates can be loaded manually or automatically from a larger reservoir. The total solution volume of the microparticle storage area (2022), sample storage area (2024), and sample / conjugate mixing area (2026) can be approximately 15 μL. The total volume of the microparticle storage region (2022), sample storage region (2024), and sample / conjugate mixing region (2026) can be about 25 μL or less. The plurality of wash regions (2028) can each contain about 10 μL of wash buffer. The detection region (2032) can include a plurality of elements, each dimensioned to hold at least one of the microparticles. As embodied herein, the detection region (2032) can include an array of nanowells configured for analyte detection. The detection region (2032) can include 50 μL of AP substrate buffer. After the assay surface (2000) is loaded, a plurality of stop elements can be inserted into the plurality of channels (2036), and the upper portion (2010) can cover the lower portion with the plurality of stop elements.

[0134] The assay surface (2000) can be disposed on the assay surface receiving component of the exemplary APU (2100). The magnetic element (2115) can generate a moving magnetic field. For purposes of illustration and not limitation, as embodied herein, the magnetic element (2115) can include a magnet, and the sliding mechanism (2140) can move the magnet horizontally.

[0135] Two of the stop elements can be removed from the channel between the microparticle storage region (2022) and the sample storage region (2024) and the channel between the sample storage region (2024) and the sample / conjugate mixing region (2026). For example, when included in an APU, a mixing dynamics element, such as a vibration motor, can vibrate the solutions and droplets in the microparticle storage region (2022), the sample storage region (2024), and the sample / conjugate mixing region (2026) at a predetermined frequency, which can promote binding of paramagnetic beads to the HIV Ag p24 analyte of interest. As embodied herein, the vibration motor can vibrate the solutions in the regions for approximately 110 seconds to fully activate the immune reaction. Alternatively, the mixing dynamics element can include an electromagnet to promote mixing under a magnetic field. For purposes of illustration and not limitation, for the analyte of interest, HIV Ag p24, after mixing and enzymatic reaction, the positive and negative signals received in the detection area of ​​the exemplary assay surface are comparable to those received based on the manual assay.

[0136] As embodied herein, a stepper motor (2220) can move the magnet from the sample / conjugate mixing region (2026) to the first wash region (2028). Alternatively, the magnetic element (2115) can be one or more electromagnets that generate a moving magnetic field along the length of the assay surface. One of the multiple stop elements (not shown) can be removed from the channel between the sample / conjugate mixing region (2026) and the first of the multiple wash regions (2028). As embodied herein, a drive element (2210) connected to the magnet can move the magnet toward and away from the first wash region. As embodied herein, the magnet can move up and down four times. Alternatively, this can be achieved by one or more electromagnets that generate a moving magnetic field in a vertical direction. For example, similar techniques can be performed as described herein for the second, third, and any additional wash regions to prepare the sample for detection. After washing, the paramagnetic beads bound to HIV Ag p24 can be transferred into the detection region (2032). As embodied herein, the detection region (2032) can include an array of nanowells. By way of example, loading of microparticles or beads into the nanowells can be under magnetic force. The magnetic force can be generated by the magnetic element (2115) of an exemplary APU. The magnetic element can be a magnet or an electromagnet. By way of example, loading of beads or microparticles under magnetic force can improve efficiency and accuracy. Additionally, multiple passes or movements of microparticles over the detection region (2032) can increase the loading percentage in the multiple nanowells. Additionally or alternatively, an inert liquid, such as oil, can be dispensed to seal the multiple nanowells for detection. As embodied herein, the multiple nanowells can be sealed with approximately 150 μL of oil dispensed from an oil reservoir (not shown), such as a syringe oil pump.

[0137] 20-22 , as embodied herein, the detection region (2032) of the assay surface (2000) can be imaged in the detection region (2120) of the APU by the detection component (2125) of the APU. By way of example and not limitation, the detection component (2125) can include a camera configured to record or measure optical signals from a plurality of nanowells having analytes and microparticles of interest therein. By way of example and not limitation, one or more processors of the exemplary APU can cause the detection component (2125) to acquire a series of images of the detection region (2032) of the exemplary assay surface. As embodied herein, the detection component (2125) can count individual signals from each of the plurality of nanowells or the surface of beads in each of the plurality of nanowells to perform single molecule counting every 30 seconds. Alternatively or additionally, the detection component (2125) can measure the intensity of the optical signal, which represents the presence or concentration of the analyte in the nanowell.

[0138] For purposes of illustration and not limitation, as embodied herein, for an HIV Ag p24 assay (600 fg / ml), after a 2-minute immunoreaction and a 1.5-minute enzymatic reaction at 37°C, the exemplary system disclosed above can achieve comparable detection sensitivity compared to conventional sample preparation and detection devices, such as the Abbott ARCHITECH™ system. For purposes of illustration and not limitation, the total assay preparation time for the HIV Ag p24 assay can be approximately 5.5 minutes. For an HIV 1-Ab assay (0.02 diluent), after a 2-minute immunoreaction and a 3-minute enzymatic reaction at 37°C, the exemplary system disclosed above can achieve comparable detection sensitivity compared to conventional sample preparation and detection devices, such as the Abbott ARCHITECH™ system. For purposes of illustration and not limitation, the total assay preparation time for the HIV 1-Ab assay can be approximately 7 minutes. For an HBsAg assay (1 fM), after a 2-minute immunoreaction and a 2-minute enzymatic reaction at 37°C, the exemplary system disclosed above can achieve comparable detection sensitivity compared to conventional sample preparation and detection devices, such as the Abbott ARCHITECH™ system. For a COVID-Ag assay (10,000 cp / ml), after a 2-minute immunoreaction and a 1.5-minute enzymatic reaction at 37°C, the exemplary system disclosed above can achieve comparable detection sensitivity compared to conventional sample preparation and detection devices, such as the Abbott ARCHITECH™ system. For illustrative purposes and without limitation, the total assay preparation time for a COVID-Ag assay can be approximately 5.5 minutes. As embodied herein, for illustrative purposes and without limitation, the sample volume of the exemplary system can be 10 μL, and the reagent assay volume of the exemplary system can be 15 μL. Alternatively, the sample volume of the exemplary system can be from about 10 μL to about 50 μL. Alternatively, the sample volume of an exemplary system may be less than 50 μL. Alternatively, the sample volume of an exemplary system may be less than 75 μL. Alternatively, the sample volume of an exemplary system may be less than 100 μL.

[0139] Alternatively, as embodied herein, for an HIV Ag p24 assay (600 fg / ml), an exemplary system can achieve comparable detection sensitivity compared to conventional sample preparation and detection devices, such as the Abbott ARCHITECH™ system, with a total assay preparation time of 5.5 minutes, including a 2-minute immune reaction and a 1.5-minute enzymatic reaction. As embodied herein, for a COVID-Ag assay (10,000 cp / ml), an exemplary system can achieve comparable detection sensitivity compared to conventional sample preparation and detection devices, such as the Abbott ARCHITECH™ system, with a total assay preparation time of 5.5 minutes, including a 2-minute immune reaction and a 1.5-minute enzymatic reaction.

[0140] 25 illustrates an exemplary assay surface 2500 in accordance with the subject matter of the present disclosure. As embodied herein, an upper portion 2560 of the assay surface 2500 covers a plurality of stop elements 2505 and a lower portion 2570 of the assay surface 2500. As embodied herein, the lower portion 2570 can include a plurality of regions and a plurality of channels that define a sample preparation and detection area 2580. For example, a plurality of stop elements 2505 are disposed in one channel 2515.

[0141] As embodied herein, the microparticle storage region (2523) of the lower portion (2570) can be configured to store a plurality of microparticles. Alternatively, the microparticles can be loaded into region (2523). The sample storage region (2525) of the lower portion (2570) can be configured to store an analyte of interest in a suitable solution. The sample / conjugate mixing region (2527) of the lower portion (2570) can be configured to mix the sample with the microparticles and reagents and / or conjugates. Alternatively, the reagents / conjugates can be added to region (2527). As embodied herein, the lower portion (2570) can include one or more wash regions (2530). For purposes of illustration and not limitation, the lower portion (2570) includes three wash regions. As embodied herein, the lower portion can include a detection region (2535) configured to detect the analyte of interest. Additionally or alternatively, the detection region can include an optical detection component, a plurality of nanowells configured for digital detection of analytes, or any other suitable detection component. By way of example, and not limitation, when performing sample analysis, microparticles can be moved under magnetic force through the region into the detection region (2535).

[0142] As embodied herein, the assay surface can further include an inert liquid containment region (2540). The inert liquid containment region can be configured to disperse an inert liquid, such as oil, to seal at least one of the plurality of regions. Additionally or alternatively, the inert liquid containment region (2540) can include a liquid inlet (2545) for dispensing a liquid.

[0143] FIG. 26 is a chart illustrating the washing efficiency using the moving magnetic field washing technique described herein for purposes of reviewing the subject matter of this disclosure and for comparison with the King-Fisher washing technique. For purposes of illustration and not limitation, an analyte of interest in an HIV Ab p24 assay is analyzed as embodied herein. Sample droplets can be mixed with paramagnetic beads, such as MS 300 beads. Each wash efficiency rating can include two bars on the chart. For example, bar 1 and bar 2 represent negative and positive signals received during detection. For purposes of illustration and not limitation, odd-numbered bars (1, 3, 5, and 7) represent negative signals received during each rating. The lower the negative signal received, the higher the wash efficiency. For purposes of illustration, rating 2601 represents the signal received without magnetic field movement, and rating 2602 represents the signal received after magnetic field movement in the vertical direction. For illustrative purposes, signal percentage is a unit of measure when digital detection is performed, and can be calculated by dividing the number of positive nanowells in the detection area by the number of microparticles. Evaluation 2601 received a 0.14% signal, and evaluation 2602 received a 0.08% signal. For illustrative purposes, evaluations 2603 and 2604 are for washes using the King-Fisher method once and three times, respectively. Each of them received a 0.08% signal. For illustrative purposes, and not limitation, washing the mixed sample droplets using a vertically moving magnetic field improves washing efficiency to a level comparable to the King-Fisher wash method.

[0144] While the subject matter of the present disclosure has been described herein in terms of certain preferred embodiments, those skilled in the art will recognize that various modifications and improvements can be made to the subject matter of the present disclosure without departing from its scope. Moreover, although individual features of one embodiment of the subject matter of the present disclosure may be discussed herein or shown in drawings of one embodiment but not other embodiments, it should be apparent that individual features of one embodiment can be combined with one or more features of another embodiment or with features from multiple embodiments.

[0145] In addition to the specific embodiments claimed below, the presently disclosed subject matter is also directed to other embodiments having any other possible combinations of the dependent features claimed below and those disclosed above. Thus, it should be recognized that the specific features presented in the dependent claims and disclosed above can be combined with each other in other ways within the scope of the presently disclosed subject matter, thereby specifically directing the presently disclosed subject matter to other embodiments having any other possible combinations. Thus, the foregoing descriptions of specific embodiments of the presently disclosed subject matter are presented for purposes of illustration and description. They are not intended to be exhaustive or to limit the presently disclosed subject matter to those disclosed embodiments.

[0146] It will be apparent to those skilled in the art that various modifications and variations can be made in the methods and systems of the presently disclosed subject matter without departing from the spirit or scope of the presently disclosed subject matter. Thus, it is intended that the presently disclosed subject matter cover modifications and variations that come within the scope of the appended claims and their equivalents.

Claims

1. An assay surface (AS) for the analysis of an analyte of interest in a sample, comprising: a sample processing component configured to process the sample for detection, the sample processing component comprising a plurality of sample preparation areas including at least one wash area configured to hold a volume of liquid and at least one storage area configured to hold a plurality of solid supports, the plurality of solid supports being movable through the plurality of sample preparation areas and passing under magnetic force across at least one surface of the liquid and / or an air-water or oil-water boundary therebetween; a detection component configured to receive the plurality of solid supports by the magnetic force and to detect the presence of or determine the level or concentration of the analyte.

2. 2. The AS of claim 1, wherein the plurality of solid supports comprises magnetic or paramagnetic microparticles or beads.

3. 10. The AS of claim 1, wherein at least one of the plurality of solid supports specifically binds the analyte of interest or at least one reagent or conjugate.

4. The AS of claim 1 , wherein the sample processing component further comprises the plurality of solid supports in the at least one storage area.

5. 10. The AS of claim 1, wherein the sample processing component further comprises at least one mixing area configured to mix the plurality of solid supports, the analyte of interest, and at least one reagent or conjugate.

6. The AS of claim 5 , wherein the sample processing component further comprises the at least one reagent or conjugate in the at least one mixing area.

7. 6. The AS of claim 5, wherein the at least one mixing area has a volume of about 25 μL or less.

8. 6. The AS of claim 5, wherein the at least one reagent is selected from the group consisting of a detectable label, a binding member, a dye, a surfactant, a diluent, and combinations thereof.

9. The AS of claim 8 , wherein the binding member comprises a receptor or an antibody.

10. 6. The AS of claim 5, wherein the at least one wash area is configured to wash away any molecules not bound to any solid support.

11. The AS of claim 10, wherein the at least one wash area has a volume of about 10 μL or less.

12. 10. The AS of claim 1, wherein the assay surface comprises a plurality of channels, each of the plurality of channels being between a first sample preparation area and a second sample preparation area.

13. 13. The AS of claim 12, wherein the assay surface comprises a plurality of stopping elements, at least one of the plurality of stopping elements being between the first sample preparation area and the second sample preparation area.

14. 14. The AS of claim 13, wherein when the at least one stopping element is removed, a volume of liquid in the first sample preparation area is fluidly connected to a volume of liquid in the second sample preparation area.

15. 11. The AS of claim 10, wherein after passing through the at least one washing region, the plurality of solid supports are moved into the detection component under the magnetic force.

16. The AS of claim 1 , wherein the detection component is configured for optical detection, analog detection, or digital detection.

17. 10. The AS of claim 1, wherein the detection component comprises an array of elements, each of the array of elements dimensioned to hold at least one of the plurality of solid supports.

18. 18. The AS of claim 17, wherein the array of elements comprises an array of nanowells.

19. 20. The AS of claim 18, wherein the detection component further comprises a region containing a volume of an inert liquid, the inert liquid configured to seal the array of nanowells.

20. 20. The AS of claim 19, wherein the inert liquid comprises an oil.

21. 18. The AS of claim 17, wherein the detection component is configured to acquire an image of the array of elements after the plurality of solid supports are moved into the detection component.

22. The AS of claim 1 , wherein the detection component is configured for single molecule counting.

23. The AS of claim 1 , wherein the assay surface comprises a hydrophobic material.

24. 10. The AS of claim 1, wherein the assay surface further comprises multiple volumes of liquid, multiple solid supports, and at least one reagent or conjugate in the multiple sample preparation areas.

Images