Methods for treating spinal muscular atrophy

Abstract

The present disclosure provides a method of treating spinal muscular atrophy (SMA) in a subject in need thereof comprising administering to the subject a therepeuticaly effective amount of a compound represented by the following structural formula: or a pharmaceutically acceptable salt thereof.

Description

[0001] METHODS FOR TREATING SPINAL MUSCULAR ATROPHY

[0002] RELATED APPLICATION

[0003] This application claims the benefit of the filing date, under 35 U.S.C. § 119(e), of U.S. Provisional Application No. 63 / 627,180, filed on January 31, 2024, the entire contents of the above-referenced application are incorporated herein by reference.

[0004] BACKGROUND

[0005] Spinal muscular atrophy (SMA) is a collection of inherited and acquired central nervous system (CNS) diseases that affect approximately 1 out of every 10,000 people. The most common form of SMA is caused by mutations in the Survival Motor Neuron (SMN) gene and manifests over a wide range of severity affecting infants through adults. The disease is characterized by progressive motor neuron loss in the spinal cord and brainstem causing muscle weakness and muscle atrophy.

[0006] The SMN gene has been mapped by linkage analysis to a complex region in chromosome 5q. In humans, this region contains an approximately 500 thousand base pairs (kb) inverted duplication resulting in two nearly identical copies of the SMN gene. SMA is caused by an inactivating mutation or deletion of the telomeric copy of the gene (SMN1) in both chromosomes, resulting in the loss of SMN1 gene function. However, all patients retain the centromeric copy of the gene (SMN2), and the copy number of the SMN2 gene in SMA patients generally correlates inversely with the disease severity, i.e., patients with less severe SMA have more copies of SMN2. Nevertheless, SMN2 is unable to compensate completely for the loss of SMN1 function due to alternative splicing of exon 7 caused by a translationally silent C to T mutation in exon 7. As a result, the majority of transcripts produced from SMN2 lack exon 7 (A7 SMN2), and encode a truncated SMN protein that has an impaired function and is rapidly degraded.

[0007] The discovery of the genetic cause of SMA has led to the development of several treatment options that affect the genes involved in SMA. Onasemnogene abeparvove (marketed as Zolgensma) is a gene replacement therapy that uses self-complementary adeno- associated virus type 9 (scAAV-9) as a vector to deliver the SMN1 transgene. Nusinersen (marketed as Spinraza) is an antisense oligonucleotide that modifies the alternative splicing of the SMN2 gene. Risdiplam ( marketed as Evyrsdi), a pyridazine derivative, can increase the amount of functional SMN protein produced by the SMN2 gene through modifying its splicing pattern. Despite the recent development and approval of disease-modifying therapies, there is still need for new therapies for treating SMA.

[0008] SUMMARY

[0009] Described herein are methods which can be useful in treating SMA in a subject.

[0010] In one aspect, the present disclosure provides a method of treating spinal muscular atrophy (SMA) in a subject in need thereof comprising administering to the subject a therapeutically effective amount of a compound represented by the following structural formula: or a pharmaceutically acceptable salt thereof, wherein X1, X2, Y1, Y2, R1, and Z are as defined herein.

[0011] Also provided are methods for treatment or prevention of diseases caused by an inactivating mutation or deletion in the SMN1 gene and / or associated with loss or defect of SMN1 gene function, particularly for the treatment or prevention of SMA in a subject in need thereof, comprising administering to the subject an effective amount of a compound of Formula (I) or a pharmaceutically acceptable salt thereof (e.g., a compound or a pharmaceutically acceptable salt thereof desribed in any one of the first through fifty-second embodiments or a compound described in Table 1 or Examples section).

[0012] DETAILED DESCRIPTION

[0013] 1. Methods

[0014] In a first embodiment, the present disclosure provides a method of treating spinal muscular atrophy (SMA) in a subject in need thereof comprising administering to the subject a therapeutically effective amount of a compound represented by the following structural formula: or a pharmaceutically acceptable salt thereof, wherein: is a single bond or double bond, provided the ring containing Xi and X2 is a 5- membered heteroaryl ring; “r1indicates that R1is substituted at one of two positions on the 6-membered ring to which the dash lines connect and the other position to which the dash lines connect is unsubstituted;

[0015] Z is -C(=O)NR2R3or -NR2C(=O)R3;

[0016] X1is S or CH;

[0017] X2is N, O or CH; one of Y1and Y2is N and the other is CH;

[0018] R1is 4 to 12 membered heterocyclyl, 4 to 12 membered carbocyclyl, -NRnR12, -Ci- ealkylene-NR13R14or -OR15wherein said 4 to 12 membered carbocyclyl or 4 to 12-membered heterocyclyl represented by R1is optionally substituted with one or more RA; wherein each RAis independently Ci-ealkyl, Cs-ecycloalkyl, Ci-ehaloalkyl, Ci- ealkoxyCi-ealkyl, -NRaRb, -Ci-3alkylene-NRaRb, -C3-6cycloalkylene-NRaRb, halo, -C(=O)Ra, or 4 to 6-membered saturated heterocyclyl; wherein each Raand Rbis independently H, Ci-ealkyl or Cs-ecycloalkyl; wherein said 4 to 6- membered saturated heterocyclyl or Cs-ecycloalkyl represented by RAis optionally substituted by one or more substituents independently selected form halo and Ci-ealkyl;

[0019] R11is H or Ci-ealkyl;

[0020] R12is Ci-ealkyl, 6 to 10-membered aryl, 4 to 12-membered heterocyclyl, or 5- 10 membered heteroaryl; wherein said Ci-ealkyl, 6 to 10-membered aryl, 4 to 12- membered heterocyclyl, or 5-10 membered heteroaryl represented by R12is optionally substituted by one or more RB; wherein

[0021] RBis halo, Ci-ealkyl, -NRaRb, 4 to 6-membered heterocyclyl, or -Ci- ealkylene-4 to 6-membered heterocyclyl; wherein said 4 to 6-membered heterocyclyl represented by RBis optionally substituted by one or more Ci- ealkyl;

[0022] R13is H or Ci-ealkyl;

[0023] R14is selected from H, Ci-ealkyl, or -Ci-ealkylene-4-6 membered saturated heterocyclyl;

[0024] R15is Ci-6alkyl-NRaRb, phenyl, 4 to 12-membered carbocyclyl, 4 to 12- membered heterocyclyl comprising at least one ring N atom, or -Ci-6alkylene-(4-6 membered saturated heterocyclyl comprising at least one ring N atom); wherein said phenyl, saturated heterocyclyl part of-Ci-ealkylene-(4-6 membered saturated heterocyclyl) or 4 to 12-membered carbocyclyl represented by R15is substituted with Ci-ealkyl, -NRaRb, Het, or -Ci-salkylene-Het, and Het is a 4 to 6-membered heterocyclyl comprising at least one ring N atom and is optionally substituted with one or two Ci-3alkyl; and wherein said 4 to 12-membered heterocyclyl represented by R15is optionally substituted by one or two Ci-3alkyl ;

[0025] R2is H or Ci-3alkyl;

[0026] R3is 6 to 10 membered aryl or 6 to 10 member heteroaryl, wherein said 6 to 10 membered aryl and 6 to 10 member heteroaryl represented by R3are optionally substituted by one or more Rc; wherein

[0027] Rcis halo, -CN, -OH, Ci-ealkyl, Ci-ehaloalkyl, or Ci-ealkoxy, or two Rctogether with the intervening atoms together form 5 to 7 membered heterocyclyl; wherein said 5 to 7 membered heterocyclyl represented by Rcis optionally substituted by RC1; where RC1is Ci-3alkyl or oxo; and wherein said heterocyclyl comprises 1-3 heteroatoms independently selected from oxygen, nitrogen, and sulfur; and said heteroaryl comprises 1-4 heteroatoms independently selected from oxygen, nitrogen, and sulfur; provided that the compound of formula (I’) is not represented by

[0028] In a second embodiment, the present disclosure provides a method according to the first embodiment, wherein the compound is represented by Formula (II): or a pharmaceutically acceptable salt thereof. The definitions of the variables are provided in the first embodiment.

[0029] In a third embodiment, the present disclosure provides a method according to the first embodiment, wherein the compound is represented by Formula (III): or a pharmaceutically acceptable salt thereof. The definitions of the variables are provided in the first embodiment.

[0030] In a fourth embodiment, the present disclosure provides a method according to the first embodiment, wherein the compound is represented by Formula (IV): or a pharmaceutically acceptable salt thereof. The definitions of the variables are provided in the first embodiment.

[0031] In a fifth embodiment, the present disclosure provides a method according to the first embodiment, wherein the compound is represented by Formula (V): or a pharmaceutically acceptable salt thereof. The definitions of the variables are provided in the first embodiment.

[0032] In a sixth embodiment, the present disclosure provides a method according to the first embodiment, wherein the compound is represented by Formula (VI): or a pharmaceutically acceptable salt thereof. The definitions of the variables are provided in the first embodiment.

[0033] In a seventh embodiment, the present disclosure provides a method according to the first embodiment, wherein the compound is represented by Formula (VII): or a pharmaceutically acceptable salt thereof. The definitions of the variables are provided in the first embodiment.

[0034] In an eighth embodiment, the present disclosure provides a method according to the first embodiment, wherein the compound is represented by Formula (VIII): or a pharmaceutically acceptable salt thereof. The definitions of the variables are provided in the first embodiment.

[0035] In a ninth embodiment, the present disclosure provides a method according to any one of the first through eighth embodiments, wherein R2is H. The definitions of the remaining variables are provided in any one of the first through eighth embodiments.

[0036] In a tenth embodiment, the present disclosure provides a method according to any one of the first through ninth embodiments, wherein R1is a 4 to 12 membered saturated heterocyclyl. The definitions of the remaining variables are provided in any one of the first through ninth embodiments.

[0037] In an eleventh embodiment, the present disclosure provides a method according to any one of the first through tenth embodiments, wherein R1is a 4 to 12 membered saturated heterocyclyl comprising one or two ring N atoms, provided when said heterocyclyl comprises one ring N atom, it is then optionally substituted with -NR7R8, -C 1-3 alkyl ene-NR7R8, or -C3- 6cycloalkylene-NR7R8and optionally further substituted with 1 to 4 R9, and when said heterocyclyl comprises two ring N atoms, it is optionally substituted with 1 to 3 R9;

[0038] R7and R8are each independently H or Ci-ealkyl; alternatively R7and R8taken together with N to which they are attached forms a 4 to 6 membered heteterocycle optionally substituted with 1 to 2 Ci-ealkyl, wherein said 4 to 6 membered heteterocycle optionally comprisesa second hetero atom selected from N and O;

[0039] R9, for each occurrence, is independently selected from halo, -C(=O)R10, Ci-ealkyl, Ci-ehaloalkyl, Ci-ealkoxyCi-ealkyl, and Cs-ecycloalkyl; wherein said Cs-ecycloalkyl represented by R9is optionally substituted by one or more substituents independently selected from halo and Ci-ealkyl; wherein R10is H, Ci-3alkyl, or Cs-ecycloalkyl. The definitions of the remaining variables are provided in any one of the first through tenth embodiments.

[0040] In a twelfth embodiment, the present disclosure provides a method according to the eleventh embodiment, wherein R1is a 4 to 12 membered saturated heterocyclyl comprising one ring N atom and is substituted with 1 to 4 R9. The definitions of the remaining variables are provided in the eleventh embodiment.

[0041] In a thirteenth embodiment, the present disclosure provides a method according to the twelfth embodiment, wherein R1is selected from pyrrolidinyl, piperidinyl, azabicyclo[3.2.1]octanyl, and azaspiro[3.4]octanyl. The definitions of the remaining variables are provided in the twelfth embodiment.

[0042] In a fourteenth embodiment, the present disclosure provides a method according to the twelfth embodiment, wherein R1is selected from: definitions of the remaining variables are provided in the twelfth embodiment.

[0043] In a fifteenth embodiment, the present disclosure provides a method according to according to the eleventh embodiment, wherein R1is a 4 to 12 membered saturated heterocyclyl comprising one ring N atom and is substituted with -NR7R8-Ci-3alkylene- NR7R8or -C3-6cycloalkylene-NR7R8and optionally further substituted with 1 to 2 R9. The definitions of the remaining variables are provided in the eleventh embodiment .

[0044] In a sixteenth embodiment, the present disclosure provides a method according to the fifteenth embodiment, wherein R1is a 4 to 12 membered saturated heterocyclyl selected from azetidinyl, piperidinyl, pyrrolidinyl, octahydro- IH-isoindolyl, and 3- azabicyclo[3.1.0]hexanyl, each of which is substituted with -NR7R8, -Ci-3alkylene-NR7R8or -C3-6cycloalkylene-NR7R8and optionally further substituted with 1 to 2 R9. The definitions of the remaining variables are provided in the fifteenth embodiment.

[0045] In a seventeenth embodiment, the present disclosure provides a method according to the fifteenth embodiment, wherein R1is selected from or -C3-6cycloalkylene-NR7R8and optionally further substituted with 1 to 2 R9. The definitions of the remaining variables are provided in any one of the first through the fifteenth embodiments. In an eighteenth embodiment, the present disclosure provides a method according to any one of the first through the seventeenth embodiments, wherein R7and R8are each independently H or Ci-3alkyl; alternatively R7and R8taken together are C2-C4 alkylene, optionally substituted with 1 or 2 Ci-3alkyl. The definitions of the remaining variables are provided in any one of the first through the seventeenth embodiments.

[0046] In a nineteenth embodiment, the present disclosure provides a method according to any one of the first through the eighteenth embodiments, wherein R7and R8are each independently H, -CH3 or - CH2CH3; alternatively R7and R8taken together are - CH2CH2CH2CH2-, - CH2CH2CH2 - or -CH2C(CH3)2CH2-. The definitions of the remaining variables are provided in any one of the first through the eighteenth embodiments.

[0047] In a twentieth embodiment, the present disclosure provides a method according to any one of the fifteenth through the seventeenth embodiments, wherein R1is selected from a group consisting of

[0048] R9. The definitions of the remaining variables are provided in any one of the fifteenth through the seventeenth embodiments.

[0049] In a twenty-first embodiment embodiment, the present disclosure provides a method according to the eleventh embodiment, wherein R1is a 4 to 12 membered saturated heterocyclyl comprising two ring N atoms and is optionally substituted with 1 to 3 R9. The definitions of the remaining variables are provided in the eleventh embodiment. In a twenty-second embodiment, the present disclosure provides a method according to the twenty-first embodiment, wherein the 4 to 12 membered saturated heterocyclyl represented by R1is piperazinyl, 4,7-diazaspiro[2.5]octanyl, 3,9-diazaspiro[5.5]undecanyl, 1- oxa-4,9-diazaspiro[5.5]undecanyl, diazabicyclo[2.2.2]octanyl, octahydro-2H-pyrido[4,3- b][l,4]oxazinyl, octahydro-lH-pyrrolo[2,3-c]pyridinyl, 2,5-diazabicyclo[2.2. l]heptanyl, octahydropyrrol o[ 1 ,2-a]pyrazinyl, decahydro- 1 ,6-naphthyridinyl, 1 ,6-diazaspiro[3 ,4]octanyl, l,5-diazaspiro[3.4]octanyl, 2,6-diazaspiro[3.3]heptanyl, 2X2,5-diazaspiro[3.4]octanyl, 22,6- diazaspiro[3 ,4]octanyl, hexahydropyrrolo[3,4-c]pyrrolyl, octahydropyrrolo[3,4-c]pyrrolyl, octahydro-lH-pyrrolo[2,3-c]pyridinyl, octahydropyrrolo[3,4-b]pyrrolyl, 3,6- diazabicyclo[3.2.0]heptanyl, 1,4-diazepanyl, 2,6-diazaspiro[3.5]nonane, 2,6- diazabicyclo[3.2.0]heptanyl, or l,7-diazaspiro[4.4]nonanyl, each of which is optionally substituted with 1 to 3 R9. The definitions of the remaining variables are provided in the twenty-first embodiment.

[0050] In a twenty-third embodiment, the present disclosure provides a method according to the twenty-second embodiment, wherein the 4 to 12 membered saturated heterocyclyl represented by R1is: each of which is optionally substituted 1 to 3 R9. The definitions of the remaining variables are provided in the twenty-second embodiment.

[0051] In a twenty-fourth embodiment, the present disclosure provides a method according to any one of the first through the ninth embodiments, wherein R1is 4 to 12 membered partially saturated heterocyclyl optionally substituted with 1, 2, 3 or 4 R9; and R9, for each occurrence, is independently selected from halo, -C(=O)R10, Ci-ealkyl, Ci-ehaloalkyl, Ci-ealkoxyCi-ealkyl, and Cs-ecycloalkyl; wherein said Cs-ecycloalkyl represented by R9is optionally substituted by one or more substituents independently selected from halo and Ci-ealkyl; wherein R10is H, Ci-3alkyl, or Cs-ecycloalkyl. The definitions of the remaining variables are provided in any one of the first through the ninth embodiments.

[0052] In a twenty-fifth embodiment, the present disclosure provides a method according to the twenty-fourth embodiment, wherein the partially saturated heterocyclyl is 2, 3,4,5- tetrahydro-lH-pyrido[2,3-e][l,4]diazepine, 1,2,3,6-tetrahydropyridinyl, 6- azabicyclo[3.1.1]hept-2-enyl. or 8-azabicyclo[3.2.1]oct-2-enyl. The definitions of the remaining variables are provided in the twenty-fourth embodiment .

[0053] In a twenty-sixth embodiment, the present disclosure provides a method according to the twenty-fourth or the twenty-fifth embodiment, wherein the partially saturated heterocyclyl is selected from a group consisting of: which is optionally substituted with 1, 2, 3 or 4 R9. The definitions of the remaining variables are provided in the twenty-fourth or the twenty -fifth embodiment.

[0054] In a twenty- seventh embodiment, the present disclosure provides a method according to any one of the first through the ninth embodiments, wherein:

[0055] R1is 4 to 12 membered saturated or partially saturated carbocyclyl substituted with - NR7R8and is further optionally substituted with 1 or 2 R9;

[0056] R7and R8are each independently H or Ci-ealkyl; alternatively R7and R8taken together with N to which they are attached forms a 4 to 6 membered heteterocycle optionally substituted with 1 to 2 Ci-ealkyl, wherein said 4 to 6 membered heteterocycle optionally comprisesa second hetero atom selected from N and O; and

[0057] R9, for each occurrence, is independently selected from halo, -C(=O)R10, Ci-ealkyl, Ci-ehaloalkyl, Ci-ealkoxyCi-ealkyl, and Cs-ecycloalkyl; wherein said Cs-ecycloalkyl represented by R9is optionally substituted by one or more substituents independently selected from halo and Ci-ealkyl; wherein R10is H, Ci-3alkyl, or Cs-ecycloalkyl. The definitions of the remaining variables are provided in any one of the first through the ninth embodiments .

[0058] In a twenty-eighth embodiment, the present disclosure provides a method according to the twenty- seventh embodiment, wherein R1is cyclohexyl or cyclohexenyl, each of which is substituted with -NR7R8and is further optionally substituted with 1 or 2 R9. The definitions of the remaining variables are provided in the twenty-seventh embodiment.

[0059] In a twenty-ninth embodiment, the present disclosure provides a method according to the twenty- seventh or the twenty-eighth embodiment, wherein R1is selected from and , each of which is substituted with -NR7R8and is further optionally substituted with 1 or 2 R9. The definitions of the remaining variables are provided in the twenty-seventh or the twenty-eighth embodiment.

[0060] In a thirtieth embodiment, the present disclosure provides a method according to any one of the twenty-seventh to the twenty-ninth embodiments, wherein R7and R8are each independently H or C 1-3 alkyl. The definitions of the remaining variables are provided in any one of the twenty-seventh to the twenty-ninth embodiment.

[0061] In a thirty-first embodiment, the present disclosure provides a method according to any one of the twenty-seventh to the twenty -ninth embodiments, wherein R7and R8are each independently H or -CH3. The definitions of the remaining variables are provided in any one of the twenty- seventh to the twenty-ninth embodiment.

[0062] In a thirty-second embodiment, the present disclosure provides a method according to any one of the first through the thirty-first embodiments, wherein R9, for each occurrence, is independently selected from halo, -C(=O)R10, Ci-4alkyl, Ci-4haloalkyl, and Cs-ecycloalkyl; wherein said Cs-ecycloalkyl represented by R9is optionally substituted by one to three substituents independently selected from F, Cl, and Ci-4alkyl; and R10is H, Ci-2alkyl, C3- 4cycloalkyl. The definitions of the remaining variables are provided in any one of the first through the thirty-first embodiments.

[0063] In a thirty-third embodiment, the present disclosure provides a method according to any one of the first through the thirty-first embodiments, wherein R9, for each occurrence, is independently selected from F, -CH3, -CH2CH3, -C(=O)CH3, -CH2CF3, -CH(CH3)2, -CD3, and cyclopropyl. The definitions of the remaining variables are provided in any one of the first through the thirty-first embodiments.

[0064] In a thirty-fourth embodiment, the present disclosure provides a method according to any one of the first through the ninth embodiments, wherein:

[0065] R1is -NRnR12;

[0066] R11is H or Ci-ealkyl; and

[0067] R12is Ci-6alkyl-NRaRb, phenyl, 4 to 12-membered heterocyclyl comprising at least one ring N atom; wherein said phenyl represented by R12is substituted with -NRaRb, Het, or -Ci-salkylene-Het, and Het is a 4 to 6-membered heterocyclyl comprising at least one ring N atom and is optionally substituted with one or two Ci-3alkyl; and wherein said 4 to 12- membered heterocyclyl represented by R12is optionally substituted by one, two, three, four or five R12a; wherein each R12ais independently Ci-3alkyl or halo. The definitions of the remaining variables are provided in any one of the first through the ninth embodiments.

[0068] In a thirty-fifth embodiment, the present disclosure provides a method according to any one of the first through the ninth and the thirty-fourth embodiments, wherein:

[0069] R1is -NRnR12;

[0070] R11is H or -CH3; and

[0071] R12is selected from a group consisting of: piperidinyl, hexahydro-lH-pyrrolizinyl, octahydrocyclopenta[c]pyrrolyl, octahydroindolizinyl, isoindolinyl, phenylazetidinyl, 1, 2,3,4,5-tetrahydro-lH-benzo[e][l,4]diazepinyl, benzylpyrrolidinyl, and quinuclidinyl, each of which is optionaly substituted with one, two, three, four or five R12a; wherein R12ais Ci-3alkyl or halo. The definitions of the remaining variables are provided in any one of the first through the ninth and the thirty-fourth embodiments.

[0072] In a thirty-sixth embodiment, the present disclosure provides a method according to the thirty-fourth or the thirty-fifth embodiment, whrein R12ais methyl or fluoro. The definitions of the remaining variables are provided in the thirty-fourth or the thirty-fifth embodiment or any alternative embodiments described therein.

[0073] In a thirty-seventh embodiment, the present disclosure provides a method according to any one of the first through the ninth and the thirty-fourth embodiments, wherein:

[0074] R1is -NRnR12;

[0075] R11is H or -CH3;

[0076] R12is selected from a group consisting of:

[0077] each of which is optionaly substituted with one, two, three, four, or five substituents independently selected from, F, -CH3 and -CH2CH3. The definitions of the remaining variables are provided in any one of the first through the ninth and the thirty-fourth embodiments.

[0078] In a thirty-eighth embodiment, the present disclosure provides a method according to any one of the first through the ninth embodiments, wherein:

[0079] R1is -OR15;

[0080] R15is Ci-6alkyl-NRaRb, phenyl, 4 to 12-membered carbocyclyl, 4 to 12-membered heterocyclyl comprising at least one ring N atom, -Ci-ealkylene-4-6 membered saturated heterocyclyl comprising at least one ring N atom; wherein said phenyl, saturated heterocyclyl part of-Ci-ealkylene-4-6 membered saturated heterocyclyl or 4 to 12-membered carbocyclyl represented by R15is substituted with Ci-ealkyl, -NRaRb, Het, or -Ci-salkylene-Het, and Het is a 4 to 6-membered heterocyclyl comprising at least one ring N atom and is optionally substituted with one or two Ci-3alkyl; and wherein said 4 to 12-membered heterocyclyl represented by R15is optionally substituted by one or two Ci-3alkyl. The definitions of the remaining variables are provided in any one of the first through the ninth embodiments .

[0081] In a thirty-ninth embodiment, the present disclosure provides a method according to the thirty-eighth embodiment, wherein R15is selected from piperidinyl, 2-pyrrolidinylmethyl, pyrrolidinyl, 8-azaspiro[4.5]decanyl, and 7-azaspiro[3.5]nonanyl, each of which is optionally substituted with one or two Ci-3alkyl or R15is cyclopentyl substituted with NRaRb; and Raand Rbare each independently H or Ci-3alkyl. The definitions of the remaining variables are provided in the thirty-eighth embodiment. In a fortieth embodiment, the present disclosure provides a method according to the thirty-eighth embodiment, wherein:

[0082] R1is -OR15;

[0083] R15is selected from a group consisting of: , each of which is optionally substituted with one or two substituents independently selected from -CH3 and -

[0084] CH2CH3; or R15is represented by . The definitions of the remaining variables are provided in the thirty-eighth embodiment.

[0085] In a forty-first embodiment, the present disclosure provides a method according to any one of the first through the fortieth embodiments, wherein R3is a 9-membered bicyclic heteroaryl optionally substituted by one to three Rcor a phenyl fused with a 5-membered heterocyclyl optional substituted with one to three RC1. The definitions of the remaining variables are provided in any one of the first through the fortieth embodiments.

[0086] In a forty-second embodiment, the present disclosure provides a method according to any one of the first through the fortieth embodiments, wherein R3is selected from a group consisting of indazolyl, imidazopyridinyl, imidazopyridazinyl, imidazopyrazinyl, benzothiazolyl, triazolopyrazinyl, benzooxazolyl, pyrazolopyrimidinyl, and benzothiadiazolyl, each of which is optionally substituted with one to three Rcor R3is 1,3- dihydro-2H-benzo[d]imidazol-2-one or benzo[d]thiazol-2(3H)-one, each of which is optionally substituted with one or two RC1. The definitions of the remaining variables are provided in any one of the first through the fortieth embodiments.

[0087] In a forty-third embodiment, the present disclosure provides a method according to the forty-second embodiment, wherein R3is selected from a group consisting of:

[0088] each of which is optionally substituted with one or two RC1. The definitions of the remaining variables are provided in the forty-second embodiment.

[0089] In a forty-fourth embodiment, the present disclosure provides a method according to any one of the first through the forty-third embodiments, wherein Rcfor each occurrence is independently halo, Ci-salkyl, Ci-2haloalkyl, or Ci-2alkoxy; and RC1for each occurrence is independently halo, Ci-salkyl or Ci-2alkoxy. The definitions of the remaining variables are provided in any one of the first through the forty-third embodiments .

[0090] In a forty-fifth embodiment, the present disclosure provides a method according to the forty-fourth embodiment, wherein Rcfor each occurrence is independently selected from -F, -CH3, -CH(CH3)2, -CF3, and -OCH3; and RC1for each occurance is -F, -CH3 or -OCH3. The definitions of the remaining variables are provided in the forty-fourth embodiment.

[0091] In a forty-sixth embodiment, the present disclosure provides a method according to the first embodiment, wherein the compound is represented by Formula (II), or (III): or a pharmaceutically acceptable salt thereof, wherein::

[0092] R1is -OR15, octahydro-lH-pyrrolo[2,3-c]pyridinyl, pyrrolidinyl, 2,6- diazaspiro[3.3]heptanyl, or 2X2,6-diazaspiro[3.4]octanyl, wherein said octahydro-lH- pyrrolo[2,3-c]pyridinyl, 2,6-diazaspiro[3.3]heptanyl, or 2X2,6-diazaspiro[3.4]octanyl is optionally substituted with 1 to 3 R9and said pyrrolidinyl is optionally substituted with - NR7R8and is further optionally substituted with 1 or 2 R9;

[0093] R7and R8are each independently H or Ci-4alkyl; alternatively R7and R8taken together with N to which they are attached forms a 4 to 6 membered heteterocycle optionally substituted with 1 to 2 Ci-salkyl;

[0094] R9, for each occurrence, is independently Ci-4alkyl;

[0095] R15is -Ci-2alkyl-(5 or 6-membered heterocyclyl), wherein the heterocyclyl is piperidinyl optionally substituted with Ci-3alkyl;

[0096] R2is H or methyl;

[0097] R3is indazolyl, imidazopyridinyl or imidazopyrazinyl, wherein said imidazopyridinyl or imidazopyrazinyl is optionally substituted with one to two Rc; and said indazaloyl is substituted with one to three Rc;

[0098] Rc, for each occurrence, is independently selected from Ci-4alkyl, Ci-4alkoxy and halo. The definitions of the remaining variables are provided in the first embodiment.

[0099] In a forty-seventh embodiment, the present disclosure provides a method according to the forty-sixth embodiment, wherein R1selected from a group consisting of: , each of which is optionally substituted with 1 or 2 R9; or

[0100] R1is , which is is optionally substituted with -NR7R8. The definitions of the remaining variables are provided in the forty-sixth embodiment.

[0101] In a forty-eighth embodiment, the present disclosure provides a method according to the forty-sixth or the forty-seventh embodiment, wherein R7and R8taken together with N to which they are attached forms a 4 to 5 membered saturated heteterocycle. The definitions of the remaining variables are provided in the forty-sixth or the forty-seventh embodiment.

[0102] In a forty-ninth embodiment, the present disclosure provides a method according to the forty-eighth embodiment, wherein R7and R8taken together with N to which they are attached forms azetidinyl or pyrrolidinyl. The definitions of the remaining variables are provided in the forty-eighth embodiment. In a fiftieth embodiment, the present disclosure provides a method according to any one of the forty-sixth through the forty-ninth embodiments, wherein R3selected from a group consisting of: ; , p y . definitions of the remaining variables are provided in any one of the forty-sixth through the forty-ninth embodiments.

[0103] In a fifty-first embodiment, the present disclosure provides a method according to any one of the forty-sixth through the fiftieth embodiments, wherein R9, for each occurrence, is - CH3. The definitions of the remaining variables are provided in any one of the forty-sixth through the fiftieth embodiments.

[0104] In a fifty-second embodiment, the present disclosure provides a method according to any one of the forty-sixth through the fifty-first embodiments, wherein Rc, for each occurrence, is independently selected from -CH3, -OCH3 and F.

[0105] In one embodiment, for the methods of the present disclosure described herein, the compound is selected from the compounds disclosed in examples and Table 1, a pharmaceutically acceptable salt or a stereoisomer thereof.

[0106] In a fifty-third embodiment, the present disclosure provides a compound of Formula (I) : or a pharmaceutically acceptable salt thereof, wherein: is a single bond or double bond, provided the ring containing Xi and X2 is a 5- membered heteroaryl ring;

[0107] “r1indicates that R1is substituted at one of two positions on the 6-membered ring to which the dash lines connect and the other position to which the dash lines connect is unsubstituted;

[0108] Z is -C(=O)NR2R3or -NR2C(=O)R3;

[0109] X1is S or CH;

[0110] X2is N, O or CH; one of Y1and Y2is N and the other is CH;

[0111] R1is 4 to 12 membered heterocyclyl, 4 to 12 membered carbocyclyl, -NRnR12, -Ci- ealkylene-NR13R14or -OR15wherein said 4 to 12 membered carbocyclyl or 4 to 12-membered heterocyclyl represented by R1is optionally substituted with one or more RA; wherein each RAis independently Ci-ealkyl, Cs-ecycloalkyl, Ci-ehaloalkyl, Ci- ealkoxyCi-ealkyl, -NRaRb, -Ci-3alkylene-NRaRb, -C3-6cycloalkylene-NRaRb, halo, -C(=O)Ra, or 4 to 6-membered saturated heterocyclyl; wherein each Raand Rbis independently H, Ci-ealkyl or Cs-ecycloalkyl; wherein said 4 to 6- membered saturated heterocyclyl or Cs-ecycloalkyl represented by RAis optionally substituted by one or more substituents independently selected form halo and Ci-ealkyl;

[0112] R11is H or Ci-ealkyl;

[0113] R12is Ci-ealkyl, 6 to 10-membered aryl, 4 to 12-membered heterocyclyl, or 5- 10 membered heteroaryl; wherein said Ci-ealkyl, 6 to 10-membered aryl, 4 to 12- membered heterocyclyl, or 5-10 membered heteroaryl represented by R12is optionally substituted by one or more RB; wherein

[0114] RBis halo, Ci-ealkyl, -NRaRb, 4 to 6-membered heterocyclyl, or -Ci- ealkylene-4 to 6-membered heterocyclyl; wherein said 4 to 6-membered heterocyclyl represented by RBis optionally substituted by one or more Ci- ealkyl;

[0115] R13is H or Ci-ealkyl;

[0116] R14is selected from H, Ci-ealkyl, or -Ci-ealkylene-4-6 membered saturated heterocyclyl;

[0117] R15is Ci-6alkyl-NRaRb, phenyl, 4 to 12-membered carbocyclyl, 4 to 12- membered heterocyclyl comprising at least one ring N atom, or -Ci-6alkylene-(4-6 membered saturated heterocyclyl comprising at least one ring N atom); wherein said phenyl, saturated heterocyclyl part of-Ci-6alkylene-(4-6 membered saturated heterocyclyl) or 4 to 12-membered carbocyclyl represented by R15is substituted with Ci-ealkyl, -NRaRb, Het, or -Ci-3alkylene-Het, and Het is a 4 to 6-membered heterocyclyl comprising at least one ring N atom and is optionally substituted with one or two Ci-3alkyl; and wherein said 4 to 12-membered heterocyclyl represented by R15is optionally substituted by one or two Ci-3alkyl ;

[0118] R2is H or Ci-3alkyl; R3is 6 to 10 membered aryl or 6 to 10 member heteroaryl, wherein said 6 to 10 membered aryl and 6 to 10 member heteroaryl represented by R3are optionally substituted by one or more Rc; wherein

[0119] Rcis halo, -CN, -OH, Ci-ealkyl, Ci-ehaloalkyl, or Ci-ealkoxy, or two Rctogether with the intervening atoms together form 5 to 7 membered heterocyclyl; wherein said 5 to 7 membered heterocyclyl represented by Rcis optionally substituted by RC1; where RC1is Ci-3alkyl or oxo; and wherein said heterocyclyl comprises 1-3 heteroatoms independently selected from oxygen, nitrogen, and sulfur; and said heteroaryl comprises 1-4 heteroatoms independently selected from oxygen, nitrogen, and sulfur; provided that the compound of formula (I’) is not represented by

[0120] In a fifty-fourth embodiment, the present disclosure provides a compound according to the fifty-third embodiment or a pharmaceutically acceptable salt thereof, wherein the compound is represented by Formula (II), or (III): or a pharmaceutically acceptable salt thereof, wherein::

[0121] R1is -OR15, octahydro-lH-pyrrolo[2,3-c]pyridinyl, pyrrolidinyl, 2,6- diazaspiro[3.3]heptanyl, or 2X2,6-diazaspiro[3.4]octanyl, wherein said octahydro-lH- pyrrolo[2,3-c]pyridinyl, 2,6-diazaspiro[3.3]heptanyl, or 2X2,6-diazaspiro[3.4]octanyl is optionally substituted with 1 to 3 R9and said pyrrolidinyl is optionally substituted with - NR7R8and is further optionally substituted with 1 or 2 R9;

[0122] R7and R8are each independently H or Ci-4alkyl; alternatively R7and R8taken together with N to which they are attached forms a 4 to 6 membered heteterocycle optionally substituted with 1 to 2 Ci-salkyl;

[0123] R9, for each occurrence, is independently Ci-4alkyl;

[0124] R15is -Ci-2alkyl-(5 or 6-membered heterocyclyl), wherein the heterocyclyl is piperidinyl optionally substituted with Ci-3alkyl; R2is H or methyl;

[0125] R3is indazolyl, imidazopyridinyl or imidazopyrazinyl, wherein said imidazopyridinyl or imidazopyrazinyl is optionally substituted with one to two Rc; and said indazaloyl is substituted with one to three Rc;

[0126] Rc, for each occurrence, is independently selected from Ci-4alkyl, Ci-4alkoxy and halo. The definitions of the remaining variables are provided in the first embodiment.

[0127] In a fifty-fifth embodiment, the present disclosure provides a compound according to the fifty-fourth embodiment or a pharmaceutically acceptable salt thereof, wherein R1selected from a group consisting of: , each of which is optionally substituted with 1 or 2 R9; or

[0128] R1is , which is is optionally substituted with -NR7R8. The definitions of the remaining variables are provided in the fifty-fourth embodiment.

[0129] In a fifty-sixth embodiment, the present disclosure provides a compound according to the fifty-fourth or the fifty-fifth embodiment or a pharmaceutically acceptable salt thereof, wherein R7and R8taken together with N to which they are attached forms a 4 to 5 membered saturated heteterocycle. The definitions of the remaining variables are provided in the fiftyfourth or the fifty-fifth embodiment.

[0130] In a fifty-seventh embodiment, the present disclosure provides a compound according to the fifty-sixth embodiment or a pharmaceutically acceptable salt thereof, wherein R7and R8taken together with N to which they are attached forms a 4 to 5 membered saturated heteterocycle. The definitions of the remaining variables are provided in the fifty-sixth embodiment.

[0131] In a fifty-eighth embodiment, the present disclosure provides a compound according to any one of the fifty-fourth through the fifty-seventh embodiments or a pharmaceutically acceptable salt thereof, wherein R3selected from a group consisting of: ; , p y . definitions of the remaining variables are provided in any one of the fifty-fourth through the fifty-seventh embodiments. In a fifty-ninth embodiment, the present disclosure provides a compound according to any one of the fifty-fourth through the fifty-eighth embodiments or a pharmaceutically acceptable salt thereof, wherein R9, for each occurrence, is -CH3. The definitions of the remaining variables are provided in any one of the fifty-fourth through the fifty-eighth embodiments. In a sixtieth embodiment, the present disclosure provides a compound according to any one of the fifty-fourth through the fifty-ninth embodiments or a pharmaceutically acceptable salt thereof, wherein Rc, for each occurrence, is independently selected from - CH3, -OCH3 and F. The definitions of the remaining variables are provided in any one of the fifty-fourth through the fifty-ninth embodiments. In one embodiment, the present disclosure provides a compound selected from

[0132] Compounds 1-269 described in the Examples section and Table 1, a pharmaceutically acceptable salt, a racemic mixture or a stereoisomer thereof.

[0133] Table 1

[0134] 2. Definitions

[0135] The term "halo" or "halogen," as used herein, refers to fluoride, chloride, bromide, or iodide. The term "alkyl" used alone or as part of a larger moiety, such as “alkoxy” or

[0136] “haloalkyl” and the like, means saturated aliphatic straight-chain or branched monovalent hydrocarbon radical of formula -CnH(2n+i). Unless otherwise specified, an alkyl group typically has 1-20, 1-10 or 1-6 carbon atoms. In some embodiments, an alkyl group has 1-6 carbon atoms, i.e. Ci-ealkyl. As used herein, a “Ci-ealkyl” group means a radical having from 1 to 6 carbon atoms in a linear or branched arrangement. Examples include methyl, ethyl, / / -propyl, iso-propyl, n-butyl, iso-butyl, tert- butyl, n-pentyl, isopentyl, hexyl, and the like. In some embodiments, an alkyl group has 1-4 carbon atoms, e., Ci-4alkyl. In some embodiments, an alkyl group has 1-3 carbon atoms, e., Ci-3alkyl.

[0137] The term "alkoxy" or “alkoxyl,” as used herein, refers to O-alkyl groups wherein alkyl is as defined above.

[0138] The term "haloalkyl" means alkyl, as the case may be, substituted with one or more halogen atoms. In one embodiment, the alkyl can be substituted by one to three halogens. Examples of haloalkyl, include, but are not limited to, trifluoromethyl, tri chloromethyl, pentafluoroethyl and the like.

[0139] The term “alkylene” as used herein, means a straight or branched chain divalent hydrocarbon group of formula -CnIEn-. Non-limiting examples include ethylene, and propylene.

[0140] The term “cycloalkyl” refers to a monocyclic, bicyclic, tricyclic, or polycyclic saturated hydrocarbon groups having 3 to 12 ring carbons. In one embodiment, cycloalkyl may have 3 to 7 or 3 to 6 ring carbons. Any substitutable ring atom can be substituted (e.g., by one or more substituents). Examples of cycloalkyl groups include, without limitation, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl. Cycloalkyl may include multiple fused and / or bridged rings. Non-limiting examples of fused / bridged cycloalkyl include: bicyclofl.1.0]butane, bicyclo[2.1.0]pentane, bicyclofl.1.0]pentane, bicyclo[3.1.0]hexane, bicyclo[2.1.1]hexane, bicyclo[3.2.0]heptane, bicyclo[4.1.0]heptane, bicyclo[2.2.1]heptane, bicyclo[3.1.1]heptane, bicyclo[4.2.0]octane, bicyclo[3.2.1]octane, bicyclo[2.2.2]octane, and the like. Cycloalkyl also includes spirocyclic rings (e.g., spirocyclic bicycle wherein two rings are connected through just one atom). Non-limiting examples of spirocyclic cycloalkyls include spiro[2.2]pentane, spiro[2.5]octane, spiro[3.5]nonane, spiro[3.5]nonane, spiro[3.5]nonane, spiro[4.4]nonane, spiro[2.6]nonane, spiro[4.5]decane, spiro[3.6]decane, spiro[5.5]undecane, and the like.

[0141] The term “heterocyclyl” or “heterocyclic” refers to a radical of a 3- to 12-membered non-aromatic ring system having ring carbon atoms and 1 to 4 ring heteroatoms, wherein each heteroatom is independently selected from nitrogen, quaternary nitrogen, oxidized nitrogen (e.g., NO), oxygen, and sulfur, including sulfoxide and sulfone (“3-12 membered heterocyclyl”). In some embodiments, a heterocyclyl group is a 3-7 membered non-aromatic ring system having ring carbon atoms and 1-4 ring heteroatoms, wherein each heteroatom is independently selected from nitrogen, oxygen, and sulfur (“3-7 membered heterocyclyl”). In heterocyclyl groups that contain one or more nitrogen atoms, the point of attachment can be a carbon or nitrogen atom, as valency permits. A heterocyclyl group can either be monocyclic (“monocyclic heterocyclyl”) or polycyclic (e.g., a bicyclic system (“bicyclic heterocyclyl”) or tricyclic system (“tricyclic heterocyclyl”); polycyclic ring systems include fused, bridged, or spiro ring systems). Exemplary monocyclic heterocyclyl groups include azetidinyl, oxetanyl, thietanyl, tetrahydrofuranyl, pyrrolidinyl, piperidinyl, tetrahydropyranyl, piperazinyl, morpholinyl, azepanyl, oxepanyl, thiepanyl, tetrahydropyridinyl, and the like. Heterocyclyl polycyclic ring systems can include heteroatoms in one or more rings in the polycyclic ring system. Substituents may be present on one or more rings in the polycyclic ring system. In some embodiments, a heterocyclyl group is a saturated heterocyclyl group. In some embodiments, a heterocyclyl group is a partially saturaturated heterocyclyl group. A partially saturaturated heterocyclyl group can contain one or more (e.g., 2 or 3) double bonds. A partially satuturated polycyclic heterocyclyl group can have one or more ring in the polycyclic ring system that are aromatic and at least one ring in the polyclyclic ring system is non-aromatic (e.g., fully saturated or partically saturated). For example, a partically saturated bicyclic heterocyclyl group can have a phenyl or a heteroaryl ring fused to a partially saturated heterocyclic ring.

[0142] Spiro heterocyclyl refers to 5 to 12 membered polycyclic heterocyclyl with rings connected through one common carbon atom (called as spiro atom), wherein said rings have one or more heteroatoms selected from the group consisting of nitrogen, quaternary nitrogen, oxidized nitrogen (e.g., NO), oxygen, and sulfur, including sulfoxide and sulfone, the remaining ring atoms being C, wherein one or more rings may contain one or more double bonds, but none of the rings has a completely conjugated pi-electron system. Representative examples of spiro heterocyclyl include, but are not limited to the following groups:

[0143] Fused heterocyclyl refers to a 5 to 12 membered polycyclic heterocyclyl group, wherein each ring in the group shares an adjacent pair of carbon atoms with another ring in the group, wherein one or more rings can contain one or more double bonds, but none of the rings has a completely conjugated 7t-electron system, and wherein said rings have one or more heteroatoms selected from the group consisting of nitrogen, quaternary nitrogen, oxidized nitrogen (e.g., NO), oxygen, and sulfur, including sulfoxide and sulfone, the remaining ring atoms being C. Representative examples of fused heterocyclyl include, but are not limited to the following groups:

[0144] Bridged heterocyclyl refers to a 5 to 12 membered polycyclic heterocyclyl group, wherein any two rings in the group share two disconnected atoms, the rings can have one or more double bonds but have no completely conjugated 7t-electron system, and the rings have one or more heteroatoms selected from the group consisting of nitrogen, quaternary nitrogen, oxidized nitrogen (e.g., NO), oxygen, and sulfur, including sulfoxide and sulfone as ring atoms, the remaining ring atoms being C. Representative examples of bridged heterocyclyl include, but are not limited to the following groups:

[0145] Generally, the cycloalkyl, or the heterocyclyl may be unsubstituted, or be substituted with one or more substituents as valency allows, wherein the substituents can be independently selected from a number of groups. Exemplary substituents include but are not limited to, oxo, -CN, halogen, alkyl and alkoxyl, optionally, the alkyl substitution may be further substituted.

[0146] The term “aryl” refers to a 6 to 10 membered all-carbon monocyclic ring or a polycyclic fused ring (a “fused” ring system means that each ring in the system shares an adjacent pair of carbon atoms with other ring in the system) group, and has a completely conjugated 7t-electron system. The term “aryl” may be used interchangeably with the terms “aryl ring” “carbocyclic aromatic ring”, “aryl group” and “carbocyclic aromatic group”. Representative examples of aryl are phenyl and naphthyl.

[0147] The term “heteroaryl,” as used herein, refers to a monocyclic or multicyclic (e.g., bicyclic) aromatic hydrocarbon in which at least one of the ring carbon atoms has been replaced with a heteroatom independently selected from oxygen, nitrogen and sulfur. Preferably, the heteroaryl is based on a C5-10 aryl with one or more of its ring carbon atoms replaced by the heteroatom. A heteroaryl group may be attached through a ring carbon atom or, where valency permits, through a ring nitrogen atom. Generally, the heteroaryl may be unsubstituted, or be substituted with one or more substituents as valency allows. Exemplary substituents include, but are not limited to, halogen, OH, alkyl, alkoxyl, and amino (e.g., NH2, NHalkyl, N(alkyl)2), optionally, the alkyl may be further substituted. A heteroaryl group can either be monocyclic (“monocyclic heteroaryl”) or polycyclic (e.g., a bicyclic system (“bicyclic heteroaryl”) or tricyclic system (“tricyclic heteroaryl”); polycyclic ring systems include fused, bridged, or spiro ring systems).

[0148] Examples of monocyclic 5-6 membered heteroaryl groups include furanyl (e.g., 2- furanyl, 3-furanyl), imidazolyl (e.g., N-imidazolyl, 2-imidazolyl, 4-imidazolyl, 5-imidazolyl), isoxazolyl ( e.g., 3-isoxazolyl, 4-isoxazolyl, 5-isoxazolyl), oxadiazolyl (e.g., 2-oxadiazolyl, 5- oxadiazolyl), oxazolyl (e.g., 2-oxazolyl, 4-oxazolyl, 5-oxazolyl), pyrazolyl (e.g., 3-pyrazolyl, 4-pyrazolyl), pyrrol yl (e.g., 1 -pyrrol yl, 2-pyrrolyl, 3 -pyrrol yl), pyridyl (e.g., 2-pyridyl, 3- pyridyl, 4-pyridyl), pyrimidinyl (e.g., 2-pyrimidinyl, 4-pyrimidinyl, 5-pyrimidinyl), pyridazinyl (e.g., 3-pyridazinyl), thiazolyl (e.g., 2-thiazolyl, 4-thiazolyl, 5-thiazolyl), triazolyl (e.g., 2-triazolyl, 5 -triazolyl), tetrazolyl (e.g., tetrazol yl), thienyl (e.g., 2-thienyl, 3 -thienyl), pyrimidinyl, pyridinyl and pyridazinyl. Examples of polycyclic aromatic heteroaryl groups include carbazolyl, benzimidazolyl, benzothienyl, benzofuranyl, indolyl, quinolinyl, benzotriazolyl, benzothiazolyl, benzoxazolyl, benzimidazolyl, isoquinolinyl, indolyl, isoindolyl, acridinyl, or benzisoxazolyl. A “substituted heteroaryl group” is substituted at any one or more substitutable ring atom, which is a ring carbon or ring nitrogen atom bonded to a hydrogen.

[0149] As used herein, many moi eties (e.g., alkyl, alkylene, cycloalkyl, aryl, heteroaryl, or heterocyclyl ) are referred to as being either “substituted” or “optionally substituted”. When a moiety is modified by one of these terms, unless otherwise noted, it denotes that any portion of the moiety that is known to one skilled in the art as being available for substitution can be substituted, which includes one or more substituents. Where if more than one substituent is present, then each substituent may be independently selected. Such means for substitution are well-known in the art and / or taught by the instant disclosure. The optional substituents can be any substituents that are suitable to attach to the moiety.

[0150] Where suitable substituents are not specifically enumerated, exemplary substituents include, but are not limited to: Ci-salkyl, Ci-shydroxyalkyl, Ci-shaloalkyl, Ci-salkoxy, C1-5 haloalkoxy, halogen, hydroxyl, cyano, amino, -CN, -NO2, -ORcl, -NRalRbl, -S(O)iRal, -NRalS(O)iRbl, -S(O)iNRalRbl, -C(=O)ORal, -OC(=O)ORal, -C(=S)ORal, -O(C=S)Ral, -C(=O)NRalRbl, -NRalC(=O)Rbl, -C(=S)NRalRbl, -C(=O)Ral, -C(=S)Ral, NRalC(=S)Rbl, -O(C=O)NRalRbl, -NRal(C=S)ORbl, -O(C=S)NRalRbl, -NRal(C=O)NRalRbl, -NRal(C=S)NRalRbl, phenyl, or 5-6 membered heteroaryl. Each Raland each Rblare independently selected from -H and Ci-salkyl, optionally substituted with hydroxyl or Ci-3alkoxy; Rclis -H, Ci-shaloalkyl or Ci-salkyl, wherein the Ci-salkyl is optionally substituted with hydroxyl or Ci-Csalkoxy.

[0151] The symbol “ as used herein, refers to the point where the moiety attaches.

[0152] Pharmaceutically Acceptable Salts

[0153] The term “pharmaceutically-acceptable salt” refers to a pharmaceutical salt that is, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, and allergic response, and is commensurate with a reasonable benefit / risk ratio. Pharmaceutically-acceptable salts are well known in the art. For example, S. M. Berge et al. describes pharmacologically acceptable salts in J. Pharm. Sci., 1977, 66, 1-19.

[0154] Pharmaceutically acceptable salts of the compounds of any one of the formulae described above include acid addition and base salts.

[0155] Included in the present teachings are pharmaceutically acceptable salts of the compounds disclosed herein. Compounds having basic groups can form pharmaceutically acceptable salts with pharmaceutically acceptable acid(s). Suitable pharmaceutically acceptable acid addition salts of the compounds described herein include salts of inorganic acids (such as hydrochloric, hydrobromic, phosphoric, metaphosphoric, nitric, and sulfuric acids) and of organic acids (such as acetic, benzenesulfonic, benzoic, ethanesulfonic, methanesulfonic, and succinic acids). Compounds of the present teachings with acidic groups such as carboxylic acids can form pharmaceutically acceptable salts with pharmaceutically acceptable base(s). Suitable pharmaceutically acceptable basic salts include ammonium salts, alkali metal salts (such as sodium and potassium salts) and alkaline earth metal salts (such as magnesium and calcium salts).

[0156] Pharmaceutically acceptable salts of compounds of any one of the formulae described above may be prepared by one or more of three methods:

[0157] (i) by reacting the compound of any one of the formulae described above with the desired acid or base;

[0158] (ii) by removing an acid- or base-labile protecting group from a suitable precursor of the compound of any one of the formulae described above or by ring-opening a suitable cyclic precursor, for example, a lactone or lactam, using the desired acid or base; or

[0159] (iii) by converting one salt of the compound of any one of the formulae described above to another by reaction with an appropriate acid or base or by means of a suitable ion exchange column.

[0160] All three reactions are typically carried out in solution. The resulting salt may precipitate out and be collected by filtration or may be recovered by evaporation of the solvent. The degree of ionisation in the resulting salt may vary from completely ionised to almost non-ionised.

[0161] The compounds of any one of the formulae described above, and pharmaceutically acceptable salts thereof, may exist in unsolvated and solvated forms.

[0162] Stereoisomers and Other Variations

[0163] The compounds of any one of the formulae described above may exhibit one or more kinds of isomerism (e.g. optical, geometric or tautomeric isomerism). Such variation is implicit to the compounds of any one of the formulae described above defined as they are by reference to their structural features and therefore within the scope of the present disclosure.

[0164] Compounds having one or more chiral centers can exist in various stereoisomeric forms, i.e., each chiral center can have an R or S configuration, or can be a mixture of both. Stereoisomers are compounds that differ only in their spatial arrangement. Stereoisomers include all diastereomeric and enantiomeric forms of a compound. Enantiomers are stereoisomers that are mirror images of each other. Diastereomers are stereoisomers having two or more chiral centers that are not identifcal and are not mirror images of each other.

[0165] When a compound is designated by its chemical name (e.g., where the configuration is indicated in the chemical name by “A” or “S”) or its structure (e.g., the configuration is indicated by “wedge” bonds) that indicates a single enantiomer, unless indicated otherwise, the compound is at least 60%, 70%, 80%, 90%, 99% or 99.9% optically pure (also referred to as “enantiomerically pure”). Optical purity is the weight in the mixture of the named or depicted enantiomer divided by the total weight in the mixture of both enantiomers.

[0166] When the stereochemistry of a disclosed compound is named or depicted by structure, and the named or depicted structure encompasses more than one stereoisomer (e.g., as in a diastereomeric pair), it is to be understood that one of the encompassed stereoisomers or any mixture of the encompassed stereoisomers is included. It is to be further understood that the stereoisomeric purity of the named or depicted stereoisomers at least 60%, 70%, 80%, 90%, 99% or 99.9% by weight. The stereoisomeric purity in this case is determined by dividing the total weight in the mixture of the stereoisomers encompassed by the name or structure by the total weight in the mixture of all of the stereoisomers.

[0167] When two stereoisomers are depicted by their chemical names or structures, and the chemical names or structures are connected by an “and”, a mixture of the two stereoisomers is intended.

[0168] When two stereoisomers are depicted by their chemical names or structures, and the names or structures are connected by an “or”, one or the other of the two stereoisomers is intended, but not both.

[0169] When a disclosed compound having a chiral center is depicted by a structure without showing a configuration at that chiral center, the structure is meant to encompass the compound with the S configuration at that chiral center, the compound with the R configuration at that chiral center, or the compound with a mixture of the R and S configuration at that chiral center. When a disclosed compound having a chiral center is depicted by its chemical name without indicating a configuration at that chiral center with “S” or “7?”, the name is meant to encompass the compound with the S configuration at that chiral center, the compound with the R configuration at that chiral center or the compound with a mixture of the R and S configuration at that chiral center.

[0170] Racemic mixture means 50% of one enantiomer and 50% of the corresponding enantiomer. When a compound with one chiral center is named or depicted without indicating the stereochemistry of the chiral center, it is understood that the name or structure encompasses both possible enantiomeric forms (e.g., both enantiomerically-pure, enantiomerically-enriched or racemic) of the compound. When a compound with two or more chiral centers is named or depicted without indicating the stereochemistry of the chiral centers, it is understood that the name or structure encompasses all possible diasteriomeric forms (e.g., diastereomerically pure, diastereomerically enriched and equimolar mixtures of one or more diastereomers (e.g., racemic mixtures) of the compound.

[0171] The term “geometric isomer” means isomers that differ in the orientation of substituent atoms in relationship to a carbon-carbon double bond, to a carbocyclic ring, or to a bridged bicyclic system. Substituent atoms (other than hydrogen) on each side of a carboncarbon double bond may be in an E or Z configuration according to the Cahn-Ingold-Prelog priority rules. In the “E” configuration, the substituents having the highest priorities are on opposite sides in relationship to the carbon-carbon double bond. In the “Z” configuration, the substituents having the highest priorities are oriented on the same side in relationship to the carbon-carbon double bond. Substituents around a carbon-carbon double bond can also be referred to as “cis” or “trans,” where “cis” represents substituents on the same side of the double bond and “trans” represents substituents on opposite sides of the double bond. The arrangement of substituents around a carbocyclic ring can also be designated as “cis” or “trans.” The term “cis” represents substituents on the same side of the plane of the ring, and the term “trans” represents substituents on opposite sides of the plane of the ring. Mixtures of compounds wherein the substituents are disposed on both the same and opposite sides of plane of the ring are designated “cis / trans.”

[0172] Where structural isomers are interconvertible via a low energy barrier, tautomeric isomerism (“tautomerism”) can occur. This can take the form of proton tautomerism in compounds of any one of the formulae described above containing, for example, an imino, keto, or oxime group, or so-called valence tautomerism in compounds which contain an aromatic moiety. It follows that a single compound may exhibit more than one type of isomerism.

[0173] In certain instances tautomeric forms of the disclosed compounds exist, such as the tautomeric structures shown below:

[0174] When a geometric isomer is depicted by name or structure, it is to be understood that the named or depicted isomer exists to a greater degree than another isomer, that is that the geometric isomeric purity of the named or depicted geometric isomer is greater than 50%, such as at least 60%, 70%, 80%, 90%, 99%, or 99.9% pure by weight. Geometric isomeric purity is determined by dividing the weight of the named or depicted geometric isomer in the mixture by the total weight of all of the geomeric isomers in the mixture.

[0175] Cis / trans isomers may be separated by conventional techniques well known to those skilled in the art, for example, chromatography and fractional crystallisation.

[0176] Conventional techniques for the prep aration / i solation of individual enantiomers / diastereomers include chiral synthesis from a suitable optically pure precursor or resolution of the racemate (or the racemate of a salt or derivative) using, for example, chiral high pressure liquid chromatography (HPLC). Alternatively, the racemate (or a racemic precursor) may be reacted with a suitable optically active compound, for example, an alcohol, or, in the case where the compound of any one of the formulae described above contains an acidic or basic moiety, a base or acid such as 1 -phenyl ethylamine or tartaric acid. The resulting diastereomeric mixture may be separated by chromatography and / or fractional crystallization and one or both of the diastereoisomers converted to the corresponding pure enantiomer(s) by means well known to a skilled person. Chiral compounds of any one of the formulae described above (and chiral precursors thereof) may be obtained in enantiomerically-enriched form using chromatography, typically HPLC, on an asymmetric resin with a mobile phase consisting of a hydrocarbon, typically heptane or hexane, containing from 0 to 50% by volume of isopropanol, typically from 2% to 20%, and from 0 to 5% by volume of an alkylamine, typically 0.1% diethylamine. Concentration of the eluate affords the enriched mixture. Chiral chromatography using sub-and supercritical fluids may be employed.

[0177] Methods for chiral chromatography useful in some embodiments of the present disclosure are known in the art (see, for example, Smith, Roger M., Loughborough University, Loughborough, UK; Chromatographic Science Series (1998), 75 (Supercritical Fluid Chromatography with Packed Columns), pp. 223-249 and references cited therein). Columns can be obtained from Chiral Technologies, Inc, West Chester, Pa., USA, a subsidiary of Daicel® Chemical Industries, Ltd., Tokyo, Japan.

[0178] It must be emphasized that the compounds of any one of the formulae described above have been drawn herein in a single tautomeric form, all possible tautomeric forms are included within the scope of the present disclosure.

[0179] 3. Administration and Dosing

[0180] Typically, a compound of the present disclosure is administered in an amount effective to treat a condition as described herein. The compounds of the present disclosure can be administered as compound per se, or alternatively, as a pharmaceutically acceptable salt. For administration and dosing purposes, the compound per se or pharmaceutically acceptable salt thereof will simply be referred to as the compounds of the present disclosure.

[0181] The compounds of the present disclosure are administered by any suitable route in the form of a pharmaceutical composition adapted to such a route, and in a dose effective for the treatment intended. The compounds of the present disclosure may be administered orally, rectally, vaginally, parenterally, or topically.

[0182] The compounds of the present disclosure may be administered orally. Oral administration may involve swallowing, so that the compound enters the gastrointestinal tract, or buccal or sublingual administration may be employed by which the compound enters the bloodstream directly from the mouth. In another embodiment, the compounds of the present disclosure may also be administered directly into the bloodstream, into muscle, or into an internal organ. Suitable means for parenteral administration include intravenous, intra-arterial, intraperitoneal, intrathecal, intraventricular, intraurethral, intrasternal, intracranial, intramuscular and subcutaneous. Suitable devices for parenteral administration include needle (including microneedle) injectors, needle-free injectors and infusion techniques.

[0183] In another embodiment, the compounds of the present disclosure may also be administered topically to the skin or mucosa, that is, dermally or transdermally. In another embodiment, the compounds of the present disclosure can also be administered intranasally or by inhalation. In another embodiment, the compounds of the present disclosure may be administered rectally or vaginally. In another embodiment, the compounds of the present disclosure may also be administered directly to the eye or ear.

[0184] The dosage regimen for the compounds of the present disclosure and / or compositions containing said compounds is based on a variety of factors, including the type, age, weight, sex and medical condition of the patient; the severity of the condition; the route of administration; and the activity of the particular compound employed. Thus the dosage regimen may vary widely. In one embodiment, the total daily dose of a compound of the present disclosure is typically from about 0.001 to about 100 mg / kg (z.e., mg compound of the present disclosure per kg body weight) for the treatment of the indicated conditions discussed herein.

[0185] For oral administration, the compositions may be provided in the form of tablets containing 0.1- 500 milligrams of the active ingredient for the symptomatic adjustment of the dosage to the patient. A medicament typically contains from about 0.01 mg to about 500 mg of the active ingredient. Intravenously, doses may range from about 0.01 to about 10 mg / kg / minute during a constant rate infusion.

[0186] Suitable subjects according to the present disclosure include mammalian subjects, including non-human mammal such as primates, rodents (mice, rats, hamsters, rabbits etc). In one embodiment, humans are suitable subjects. Human subjects may be of either gender and at any stage of development.

[0187] 4. Pharmaceutical Compositions

[0188] In another embodiment, the present disclosure comprises pharmaceutical compositions. Such pharmaceutical compositions comprise a compound of the present disclosure presented, a pharmaceutically acceptable salt, or a stereoisomer thereof with a pharmaceutically acceptable carrier or excipient. Other pharmacologically active substances can also be present.

[0189] As used herein, “pharmaceutically acceptable carrier or excipient” includes any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like that are physiologically compatible. Examples of pharmaceutically acceptable carriers include one or more of water, saline, phosphate buffered saline, dextrose, glycerol, ethanol and the like, as well as combinations thereof, and may include isotonic agents, for example, sugars, sodium chloride, or polyalcohols such as mannitol, or sorbitol in the composition. Pharmaceutically acceptable substances such as wetting agents or minor amounts of auxiliary substances such as wetting or emulsifying agents, preservatives or buffers, which enhance the shelf life or effectiveness of the antibody or antibody portion.

[0190] The compositions of present disclosure may be in a variety of forms. These include, for example, liquid, semi-solid and solid dosage forms, such as liquid solutions e.g., injectable and infusible solutions), dispersions or suspensions, tablets, pills, powders, liposomes and suppositories. The form depends on the intended mode of administration and therapeutic application.

[0191] Typical compositions are in the form of injectable or infusible solutions, such as compositions similar to those used for passive immunization of humans with antibodies in general. One mode of administration is parenteral (e.g. intravenous, subcutaneous, intraperitoneal, intramuscular). In another embodiment, the antibody is administered by intravenous infusion or injection. In yet another embodiment, the antibody is administered by intramuscular or subcutaneous injection.

[0192] Oral administration of a solid dose form may be, for example, presented in discrete units, such as hard or soft capsules, pills, cachets, lozenges, or tablets, each containing a predetermined amount of at least one compound of the present disclosure. In another embodiment, the oral administration may be in a powder or granule form. In another embodiment, the oral dose form is sub-lingual, such as, for example, a lozenge. In such solid dosage forms, the compounds of any one of the formulae described above are ordinarily combined with one or more adjuvants. Such capsules or tablets may contain a controlled release formulation. In the case of capsules, tablets, and pills, the dosage forms also may comprise buffering agents or may be prepared with enteric coatings.

[0193] In another embodiment, oral administration may be in a liquid dose form. Liquid dosage forms for oral administration include, for example, pharmaceutically acceptable emulsions, solutions, suspensions, syrups, and elixirs containing inert diluents commonly used in the art (e.g., water). Such compositions also may comprise adjuvants, such as wetting, emulsifying, suspending, flavoring (e.g., sweetening), and / or perfuming agents.

[0194] In another embodiment, the present disclosure comprises a parenteral dose form.

[0195] “Parenteral administration” includes, for example, subcutaneous injections, intravenous injections, intraperitoneally, intramuscular injections, intrasternal injections, and infusion. Injectable preparations (i.e., sterile injectable aqueous or oleaginous suspensions) may be formulated according to the known art using suitable dispersing, wetting agents, and / or suspending agents.

[0196] In another embodiment, the present disclosure comprises a topical dose form.

[0197] “Topical administration” includes, for example, transdermal administration, such as via transdermal patches or iontophoresis devices, intraocular administration, or intranasal or inhalation administration. Compositions for topical administration also include, for example, topical gels, sprays, ointments, and creams. A topical formulation may include a compound which enhances absorption or penetration of the active ingredient through the skin or other affected areas. When the compounds of present disclosure are administered by a transdermal device, administration will be accomplished using a patch either of the reservoir and porous membrane type or of a solid matrix variety. Typical formulations for this purpose include gels, hydrogels, lotions, solutions, creams, ointments, dusting powders, dressings, foams, films, skin patches, wafers, implants, sponges, fibres, bandages and microemulsions. Liposomes may also be used. Typical carriers include alcohol, water, mineral oil, liquid petrolatum, white petrolatum, glycerin, polyethylene glycol and propylene glycol. Penetration enhancers may be incorporated - see, for example, Finnin and Morgan, J. Pharm. Se , 88:955-958, 1999.

[0198] Formulations suitable for topical administration to the eye include, for example, eye drops wherein the compound of present disclosure is dissolved or suspended in a suitable carrier. A typical formulation suitable for ocular or aural administration may be in the form of drops of a micronized suspension or solution in isotonic, pH-adjusted, sterile saline. Other formulations suitable for ocular and aural administration include ointments, biodegradable i.e., absorbable gel sponges, collagen) and non-biodegradable (i.e., silicone) implants, wafers, lenses and particulate or vesicular systems, such as niosomes or liposomes. A polymer such as crossed linked polyacrylic acid, polyvinyl alcohol, hyaluronic acid, a cellulosic polymer, for example, hydroxypropylmethylcellulose, hydroxyethylcellulose, or methylcellulose, or a heteropolysaccharide polymer, for example, gelan gum, may be incorporated together with a preservative, such as benzalkonium chloride. Such formulations may also be delivered by iontophoresis.

[0199] For intranasal administration or administration by inhalation, the compounds of the present disclosure are conveniently delivered in the form of a solution or suspension from a pump spray container that is squeezed or pumped by the patient or as an aerosol spray presentation from a pressurized container or a nebulizer, with the use of a suitable propellant. Formulations suitable for intranasal administration are typically administered in the form of a dry powder (either alone, as a mixture, for example, in a dry blend with lactose, or as a mixed component particle, for example, mixed with phospholipids, such as phosphatidylcholine) from a dry powder inhaler or as an aerosol spray from a pressurized container, pump, spray, atomizer (preferably an atomizer using electrohydrodynamics to produce a fine mist), or nebulizer, with or without the use of a suitable propellant, such as 1,1,1,2-tetrafluoroethane or 1,1,1,2,3,3,3-heptafluoropropane. For intranasal use, the powder may comprise a bioadhesive agent, for example, chitosan or cyclodextrin.

[0200] In another embodiment, the present disclosure comprises a rectal dose form. Such rectal dose form may be in the form of, for example, a suppository. Cocoa butter is a traditional suppository base, but various alternatives may be used as appropriate.

[0201] Other carrier materials and modes of administration known in the pharmaceutical art may also be used. Pharmaceutical compositions of the present disclosure may be prepared by any of the well-known techniques of pharmacy, such as effective formulation and administration procedures.

[0202] The above considerations in regard to effective formulations and administration procedures are well known in the art and are described in standard textbooks. Formulation of drugs is discussed in, for example, Hoover, John E., Remington ’s Pharmaceutical Sciences, Mack Publishing Co., Easton, Pa., 1975; Liberman el al., Eds., Pharmaceutical Dosage Forms, Marcel Decker, New York, N.Y., 1980; and Kibbe et al., Eds., Handbook of Pharmaceutical Excipients (3rdEd.), American Pharmaceutical Association, Washington, 1999.

[0203] 5. Method of Treatment

[0204] The terms "subject," "individual," or "patient," used interchangeably, refer to any animal, including mammals, preferably mice, rats, other rodents, rabbits, dogs, cats, swine, cattle, sheep, horses, or primates, and most preferably humans.

[0205] The terms “treatment,” “treat,” and “treating” refer to reversing, alleviating, or inhibiting the progress of a disease described herein. In some embodiments, treatment may be administered after one or more signs or symptoms of the disease have developed or have been observed (z.e., therapeutic treatment). In other embodiments, treatment may be administered in the absence of signs or symptoms of the disease. For example, treatment may be administered to a susceptible subject prior to the onset of symptoms (ie., prophylactic treatment) (e.g., in light of a history of symptoms and / or in light of exposure to a pathogen). Treatment may also be continued after symptoms have resolved, for example, to delay or prevent recurrence.

[0206] The term “treating spinal muscular atrophy (SMA)” or “treatment of spinal muscular atrophy (SMA)” includes one or more of the following effects: (i) reduction or amelioration of the severity of SMA; (ii) delay of the onset of SMA; (iii) inhibition of the progression of SMA; (iv) reduction of hospitalization of a subject; (v) reduction of hospitalization length for a subject; (vi) increase of the survival of a subject; (vii) improvement of the quality of life of a subject; (viii) reduction of the number of symptoms associated with SMA; (ix) reduction of or amelioration of the severity of one or more symptoms associated with SMA; (x) reduction of the duration of a symptom associated with SMA; (xi) prevention of the recurrence of a symptom associated with SMA; (xii) inhibition of the development or onset of a symptom of SMA; and / or (xiii) inhibition of the progression of a symptom associated with SMA.

[0207] More particular, the term “treating SMA” denotes one or more of the following beneficial effects: (i) a reduction in the loss of muscle strength; (ii) an increase in muscle strength; (iii) a reduction in muscle atrophy; (iv) a reduction in the loss of motor function; (v) an increase in motor neurons; (vii) a reduction in the loss of motor neurons; (viii) protection of SMN deficient motor neurons from degeneration; (ix) an increase in motor function; (x) an increase in pulmonary function; and / or (xi) a reduction in the loss of pulmonary function.

[0208] In further detail, the term “treating SMA” refers to the functional ability or retention of the functional ability for a human infant or a human toddler to sit up unaided or for a human infant, a human toddler, a human child or a human adult to stand up unaided, to walk unaided, to run unaided, to breathe unaided, to turn during sleep unaided, or to swallow unaided.

[0209] The term “prevention” (or “prevent” or “preventing”), as used herein, refers to precluding, averting, obviating, forestalling, reducing the incidence of, stopping, or hindering the symptoms of a disease, disorder and / or condition. Prevention includes administration to a subject who does not exhibit symptoms of a disease, disorder, and / or condition at the time of administration. The terms “condition,” “disease,” and “disorder” are used interchangeably.

[0210] The term “administer,” “administering,” or “administration” refers to methods introducing a compound disclosed herein, or a composition thereof, in or on a patient. These methods include, but are not limited to, intraarticular (in the joints), intravenous, intramuscular, intratumoral, intradermal, intraperitoneal, subcutaneous, orally, topically, intrathecally, inhalationally, transdermally, rectally, and the like. Administration techniques that can be employed with the agents and methods described herein are found in e.g., Goodman and Gilman, The Pharmacological Basis of Therapeutics, current ed.; Pergam on; and Remington’s, Pharmaceutical Sciences (current edition), Mack Publishing Co., Easton, Pa.

[0211] Generally, an effective amount of a compound taught herein varies depending upon various factors, such as the given drug or compound, the pharmaceutical formulation, the route of administration, the type of disease or disorder, the identity of the subject or host being treated, and the like, but can nevertheless be routinely determined by one skilled in the art. An effective amount of a compound of the present teachings may be readily determined by one of ordinary skill by routine methods known in the art.

[0212] The term “therapeutically effective amount” means an amount when administered to the subject which results in beneficial or desired results, including clinical results, e.g., inhibits, suppresses or reduces the symptoms of the condition being treated in the subject as compared to a control. The exact amount required will vary from subject to subject, depending on the species, age, and general condition of the subject, the severity of the disease, the particular anticancer agent, its mode of administration, combination treatment with other therapies, and the like.

[0213] In one embodiment, the present disclosure relates to a compound of formula (I) or a pharmaceutically acceptable salt thereof for use as a medicament.

[0214] In one embodiment, the present disclosure relates to a compound of (I) or a pharmaceutically acceptable salt thereof for use in a method of treatment of the human or animal body.

[0215] The present disclosure further provides a method of treating spinal muscular atrophy (SMA) in a subject in need thereof, comprising administering to the subject an effective amount of a compound of Formula (I) or a pharmaceutically acceptable salt thereof.

[0216] In one embodiment, the present disclosure provides a compound of Formula (I) or a pharmaceutically acceptable salt thereof for use in the treatment of SMA in a subject in need thereof comprising, administering to the subject an effective amount of the compound of Formula (I) or a pharmaceutically acceptable salt thereof.

[0217] In one embodiment, the present disclosure provides a use for a compound of Formula (I) or a pharmaceutically acceptable salt thereof in the manufacture of a medicament for the treatment of SMA in a subject in need thereof comprising, administering to the subject an effective amount of the medicament.

[0218] In some embodiments, the compounds of Formula (I) or a pharmaceutically acceptable salt thereof can enhance inclusion of exon 7 of SMN1 and / or SMN2 into mRNA transcribed from the SMN1 and / or SMN2 gene, thereby increasing expression of SMN protein in a human subject in need thereof.

[0219] In one embodiment the present disclosure provides a method for treatment or prevention of diseases caused by an inactivating mutation or deletion in the SMN1 gene and / or associated with loss or defect of SMN1 gene function, particularly for the treatment or prevention of SMA, in a subject in need thereof, comprising administering to the subject an effective amount of a compound of Formula (I) or a pharmaceutically acceptable salt thereof.

[0220] In one embodiment, the present disclosure provides a compound of Formula (I) or a pharmaceutically acceptable salt thereof for use in the treatment or prevention of diseases caused by an inactivating mutation or deletion in the SMN1 gene and / or associated with loss or defect of SMN1 gene function, particularly for the treatment or prevention of SMA, in a subject in need thereof, comprising, administering to the subject an effective amount of the compound of Formula (I) or a pharmaceutically acceptable salt thereof.

[0221] In one embodiment, the present disclosure provides a use for a compound of Formula (I) or a pharmaceutically acceptable salt thereof in the manufacture of a medicament for the treatment or prevention of diseases caused by an inactivating mutation or deletion in the SMN1 gene and / or associated with loss or defect of SMN1 gene function, particularly for the treatment or prevention of SMA in a subject in need thereof comprising, administering to the subject an effective amount of the medicament.

[0222] 6. Treatment Kits

[0223] One aspect of the present invention relates to a kit for conveniently and effectively carrying out the methods or uses in accordance with the present invention. In general, the pharmaceutical pack or kit comprises one or more containers filled with one or more of the ingredients of the pharmaceutical compositions of the invention. Such kits are especially suited for the delivery of solid oral forms such as tablets or capsules. Such a kit preferably includes a number of unit dosages, and may also include a card having the dosages oriented in the order of their intended use. If desired, a memory aid can be provided, for example in the form of numbers, letters, or other markings or with a calendar insert, designating the days in the treatment schedule in which the dosages can be administered. Optionally associated with such container(s) can be a notice in the form prescribed by a governmental agency regulating the manufacture, use or sale of pharmaceutical products, which notice reflects approval by the agency of manufacture, use or sale for human administration.

[0224] The following representative examples contain important additional information, exemplification and guidance which can be adapted to the practice of this invention in its various embodiments and the equivalents thereof. These examples are intended to help illustrate the invention, and are not intended to, nor should they be construed to, limit its scope. Indeed, various modifications of the invention, and many further embodiments thereof, in addition to those shown and described herein, will become apparent to those skilled in the art upon review of this document, including the examples which follow and the references to the scientific and patent literature cited herein.

[0225] The contents of the cited references are incorporated herein by reference to help illustrate the state of the art.

[0226] In addition, for purposes of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 75thEd., inside cover. Additionally, general principles of organic chemistry, as well as specific functional moieties and reactivity, are described in “Organic Chemistry,” Thomas Sorrell, University Science Books, Sausalito: 1999, and “Organic Chemistry,” Morrison & Boyd (3d Ed), the entire contents of both of which are incorporated herein by reference.

[0227] 7. Preparation

[0228] The compounds of any one of the formulae described above, may be prepared by the general and specific methods described below, using the common general knowledge of one skilled in the art of synthetic organic chemistry. Such common general knowledge can be found in standard reference books such as Comprehensive Organic Chemistry, Ed. Barton and Ollis, Elsevier; Comprehensive Organic Transformations: A Guide to Functional Group Preparations, Larock, John Wiley and Sons; and Compendium of Organic Synthetic Methods, Vol. I-XII (published by Wiley-Interscience). The starting materials used herein are commercially available or may be prepared by routine methods known in the art. In the preparation of the compounds of any one of the formulae described above, it is noted that some of the preparation methods described herein may require protection of remote functionality (e.g., primary amine, secondary amine, carboxyl in any one of the formulae described above precursors). The need for such protection will vary depending on the nature of the remote functionality and the conditions of the preparation methods. The need for such protection is readily determined by one skilled in the art. The use of such protect! on / deprotecti on methods is also within the skill in the art. For a general description of protecting groups and their use, see Greene, Protective Groups in Organic Synthesis, John Wiley & Sons, New York, 1991.

[0229] For example, certain compounds contain primary amines or carboxylic acid functionalities which may interfere with reactions at other sites of the molecule if left unprotected. Accordingly, such functionalities may be protected by an appropriate protecting group which may be removed in a subsequent step. Suitable protecting groups for amine and carboxylic acid protection include those protecting groups commonly used in peptide synthesis (such as N-t-butoxy carbonyl (Boc), benzyloxycarbonyl (Cbz), and 9- fluorenylmethylenoxycarbonyl (Fmoc) for amines, and lower alkyl or benzyl esters for carboxylic acids) which are generally not chemically reactive under the reaction conditions described and can typically be removed without chemically altering other functionality in the any one of the formulae described above compounds.

[0230] The Schemes described below are intended to provide a general description of the methodology employed in the preparation of the compounds of the present disclosure. Some of the compounds of the present disclosure may contain single or multiple chiral centers with the stereochemical designation (A) or (5). It will be apparent to one skilled in the art that all of the synthetic transformations can be conducted in a similar manner whether the materials are enantio-enriched or racemic. Moreover, the resolution to the desired optically active material may take place at any desired point in the sequence using well known methods such as described herein and in the chemistry literature.

[0231] EXAMPLES

[0232]

[0233] Section 1. General Methods and Analytical Methods a. General Methods

[0234] The compounds of the Examples were analyzed or purified according to one of the Purification Methods referred to below unless otherwise described. Where preparative TLC / HPLC or silica gel chromatography have been used, one skilled in the art may choose any combination of solvents to purify the desired compound. Silica gel column chromatography was performed using 20-40 mM (particle size), 250-400 mesh, or 400- 632 mesh silica gel using either a Teledyne ISCO Combiflash RF or a Grace Reveleris X2 with ELSD purification systems or using pressurized nitrogen (-10-15 psi) to drive solvent through the column (“flash chromatography”). Wherein an SCX column has been used, the eluant conditions are MeOH followed by methanolic ammonia. Where indicated, solutions and reaction mixtures were concentrated by rotary evaporation under vacuum. b. Analytical Methods Analytical LCMS instrumentation specifications: Waters Acquity iClass UPLC with QDa mass spectrometer and PDA (photodiode array detector)

[0235] RxnQC / FrxQC / PurityQC Analysis LC / MS method conditions:

[0236] Ammonium hydroxide (basic pH) conditions

[0237] METHOD 1

[0238] MS mode: MS:ESI+ scan range 165-650 daltons

[0239] PDA: 200-400nm scan range

[0240] Column: Waters ACQUITY UPLC BEH C18 2.1x50mm, 1.7um; Part No. 186002350

[0241] Modifier: Ammonium hydroxide 0.2% (v / v) cone.

[0242] Method: 95% H2O / 5% MeCN (initial conditions) hold 0. Imin, linear gradient to 5%H20 / 95% MeCN at 3.25min, hold 5% H2O / 95% MeCN to 3.5min. Flow rate, 0.8mL / min.

[0243] METHOD 2

[0244] MS mode: MS:ESI+ scan range 165-650 daltons

[0245] PDA: 200-400nm scan range

[0246] Column: Waters ACQUITY UPLC BEH C18 2.1x30mm, 1.7um; Part No. 186002349

[0247] Modifier: Ammonium hydroxide 0.2% (v / v) cone.

[0248] Method: 95%H20 / 5%MeCN (initial conditions), linear gradient to 5%H20 / 95%MeCN at l.Omin, hold 5%H20 / 95%MeCN to 1.3min. Flow rate, 0.7mL / min.

[0249] Trifluoroacetic acid (acidic pH) conditions

[0250] METHOD 3

[0251] MS mode: MS:ESI+ scan range 165-650 daltons

[0252] PDA: 200-400nm scan range

[0253] Column: Waters ACQUITY UPLC BEH C18 2.1x50mm, 1.7um; Part No. 186002350

[0254] Modifier: Trifluoroacetic acid 0.1% (v / v) cone.

[0255] Method: 95%H20 / 5%MeCN (initial conditions) hold O.lmin, linear gradient to 5%H20 / 95%MeCN at 3.25min, hold 5%H20 / 95%MeCN to 3.5min. Flow rate, 0.8mL / min.

[0256] METHOD 4

[0257] MS mode: MS:ESI+ scan range 165-650 daltons

[0258] PDA: 200-400nm scan range

[0259] Column: Waters ACQUITY UPLC BEH C18 2.1x50mm, 1.7um; Part No. 186002349

[0260] Modifier: Trifluoroacetic acid 0.1% (v / v) cone. Method: 95%H20 / 5%MeCN (initial conditions), linear gradient to 5%H20 / 95%MeCN at l.Omin, hold 5%H20 / 95%MeCN to 1.3min. Flow rate, 0.7mL / min.

[0261] Analytical LCMS instrumentation specifications:

[0262] Agilent 1200 Series LC / MSD system with DAD\ELSD Alltech 3300 and Agilent LC\MSD G6130A, G6120B mass-spectrometer; Agilent Technologies 1260 Infinity LC / MSD system with DAD\ELSD Alltech 3300 and Agilent LC\MSD G6120B mass-spectrometer; Agilent Technologies 1260 Infinity II LC / MSD system with DAD\ELSD G7102A 1290 Infinity II and Agilent LC\MSD G6120B mass-spectrometer; Agilent 1260 Series LC / MSD system with DAD\ELSD and Agilent LC\MSD (G6120B) mass-spectrometer; UHPLC Agilent 1290 Series LC / MSD system with DAD\ELSD and Agilent LC\MSD (G6125B) mass-spectrometer, Shimadzu LCMS-2020.

[0263] RxnQC / FrxQC / PurityQC Analysis LC / MS method conditions:

[0264] Formic acid (acidic pH) conditions

[0265] METHOD 5

[0266] Inject volume: 0.5 pl, Column Temperature: 60 °C, UV scan: 207-223 nM, 246-262 nM, 272- 288 nM, Agilent Poroshell 120 SB-C18 4.6x30mm 2.7 pm with UHPLC Guard Infinity Lab Poroshell 120 SB-C18 4.6x 5mm 2.7 pm, Mobile phase A: 0.1% FA in Water, Mobile phase B: 0.1% FA in Acetonitrile.

[0267] Details of Elution

[0268] METHOD 6

[0269] Inject volume: 0.5 pl ; Column Temperature : 60 °C; UV scan: 207-223 nM, 246-262 nM, 272-288 nM

[0270] Agilent Poroshell 120 SB-C18 4.6x30mm 2.7 pm with UHPLC Guard Infinity Lab Poroshell 120 SB-C18 4.6x 5mm 2.7 pm, Mobile phase A: 0.1% FA in Water, Mobile phase B: 0.1% FA in Acetonitrile

[0271] Details of Elution

[0272] METHOD 7

[0273] MS mode: MS ESI+ scan range 100-1000 daltons

[0274] PDA: 190-370 nm scan range Column: Xtimate C18 2.1*30mm, 3um

[0275] Modifier: A Phase: water(4L)+TFA(1.5mL), B Phase: acetonitrile(4L)+TFA(0.75mL)

[0276] Method: using the elution gradient 10%-80% (solvent B) over 1.35 or 3.35 minutes and holding at 80% for 0.9 minutes at a flow rate of 0.8 ml / min. METHOD 8

[0277] Description:

[0278] Mobile phase: Ramp from 5% ACN (0.018%TFA) in water (0.037%TFA) to 95% ACN in 3.0min, Flow rate is set at l.OmL / min; then hold at 95% ACN for 0.60 minutes Flow rate is set from 1.OmL / min to 1.5mL / min; return back to 5% ACN in water and hold for 0.40 min.

[0279] Flow rate is set at 1.5mL / min.

[0280] Column temperature at 50 °C.

[0281] The column is of Shim-pack Velox SP-C18 2.7pm 3.0*30mm. METHOD 9

[0282] Description:

[0283] Mobile phase: Ramp from 5% ACN (0.01875%TFA) in water (0.0375%TFA) to 95% ACN in water in 0.60 min, Flow rate is set at 2. OmL / min; then hold at 95% ACN for 0.18 minutes Flow rate is set at 2. OmL / min; return back to 5% ACN in water and hold for 0.02 min. Flow rate is set at 2. OmL / min.

[0284] Column temperature at 50°C.

[0285] The column is of Kinetex® EVO C18 2.1x30mm 5um. METHOD 10

[0286] Description:

[0287] Mobile phase: Ramp from 5% ACN (0.01875%TFA) in water (0.0375%TFA) to 95% ACN in 3.20 min, Flow rate is set at 1.5mL / min; then hold at 95% ACN for 0.30 minutes Flow rate is set at 1.5mL / min; return back to 5% ACN in water and hold for 0.30 min. Flow rate is set at 2. OmL / min. Column temperature at 50°C. The column is of Kinetex® EVO C18 4.6x50mm

[0288] 5um.

[0289] METHOD 11 (3 min) Ramp from 0%-60% (solvent B) over 2 minutes holding at 60% for 0.48 minutes at flow rate of ImL / minutes. Wavelength: 220 and 254 nm.

[0290] METHOD 12:

[0291] Ramp from 0%-60% (solvent B) over 3 minutes holding at 60% for 0.5 minutes at flow rate of 0.8mL / minutes. Wavelength: UV 220 and 254 nm.

[0292] METHOD 13 (7 mins):

[0293] Ramp from 0%-60% (solvent B) over 6 minutes holding at 60% for 0.5 minutes at flow rate of 0.8mL / minutes. Wavelength: UV 220 and 254 nm.

[0294] METHOD 14 (10-80 6 min):

[0295] MS mode: MS ESI+ scan range 100-1000 daltons

[0296] PDA: 190-370 nm scan range

[0297] Column: Xtimate C18 2.1*30mm, 3um

[0298] Modifier: A Phase: water(4L)+TFA(1.5mL), B Phase: acetonitrile(4L)+TFA(0.75mL)

[0299] Method: using the elution gradient 10%-80% (solvent B) over 5.35 minutes and holding at 80% for 0.9 minutes at a flow rate of 0.8 ml / min. Wavelength: UV 220 and 254 nm.

[0300] METHOD 15:

[0301] Modifier: A Phase: water(4L)+TFA(1.5mL), B Phase: acetonitrile(4L)+TFA(0.75mL)

[0302] Ramp from 0%-60% (solvent B) over 4 minutes holding at 60% for 0.5 minutes at flow rate of 0.8mL / minutes. Wavelength: UV 220 and 254 nm.

[0303] METHOD 16:

[0304] Modifier: A Phase: water(4L)+TFA(1.5mL), B Phase: acetonitrile(4L)+TFA(0.75mL)

[0305] Ramp from 0%-60% (solvent B) over 8 minutes holding at 60% for 0.5 minutes at flow rate of 0.8mL / minutes. Wavelength: UV 220 and 254 nm.

[0306] METHOD 17:

[0307] Modifier: A Phase: water(4L)+TFA(1.5mL), B Phase: acetonitrile(4L)+TFA(0.75mL)

[0308] Ramp from 10%-80% (solvent B) over 2 minutes holding at 60% for 0.5 minutes at flow rate of 0.8mL / minutes. Wavelength: UV 220 and 254 nm. METHOD 18:

[0309] Modifier: A Phase: water(4L)+TFA(1.5mL), B Phase: acetonitrile(4L)+TFA(0.75mL)

[0310] Ramp from 10%-80% (solvent B) over 2 minutes holding at 60% for 0.5 minutes at flow rate of 0.8mL / minutes. Wavelength: UV 220 and 254 nm.

[0311] METHOD 19:

[0312] Modifier: A Phase: water(4L)+TFA(1.5mL), B Phase: acetonitrile(4L)+TFA(0.75mL)

[0313] Ramp from 30%-100% (solvent B) over 6 minutes holding at 60% for 0.5 minutes at flow rate of 0.8mL / minutes. Wavelength: UV 220 and 254 nm.

[0314] METHOD 20:

[0315] Modifier: A Phase: water(4L)+TFA(1.5mL), B Phase: acetonitrile(4L)+TFA(0.75mL)

[0316] Ramp from 30%-90% (solvent B) over 3 minutes holding at 60% for 0.5 minutes at flow rate of 0.8mL / minutes. Wavelength: UV 220 and 254 nm.

[0317] Preparative HPLC-MS conditions:

[0318] HPLC-MS instrumentation specifications

[0319] Waters Autopurification with QDa mass spectrometer and PDA (photodiode array detector).

[0320] Ammonium hydroxide (basic pH) conditions

[0321] Flow rate: 30mL / min

[0322] MS mode: MS:ESI+ scan range 165-650 daltons

[0323] PDA: 200-400nm scan range

[0324] Column: Waters XSELECT CSH C18 PREP 19x100mm, 5um; Part No. 186005421

[0325] Modifier: 0.2% Ammonium hydroxide (v / v) cone.

[0326] Method: A%H20 / B%MeCN (initial conditions) hold 0.5min, linear gradient to A%H20 / B%MeCN at 8min, ramp to 5%H20 / 95%MeCN at 8.5min, HOLD 5%H20 / 95%MeCN to lOmin.

[0327] Flow rate: 50mL / min

[0328] MS mode: MS:ESI+ scan range 165-650 daltons

[0329] PDA: 200-400nm scan range

[0330] Column: Waters XSELECT CSH C18 PREP 30x100mm, 5um; Part No. 186005425

[0331] Modifier: 0.2% Ammonium hydroxide (v / v) cone. Method: A%H20 / B%MeCN (initial conditions) hold 0.5min, linear gradient to A%H20 / B%MeCN at 8min, ramp to 5%H20 / 95%MeCN at 8.5min, HOLD 5%H20 / 95%MeCN to lOmin.

[0332] Flow rate, 60mL / min

[0333] MS mode: MS:ESI+ scan range 165-650 daltons

[0334] PDA: 200-400nm scan range

[0335] Column: Waters XSELECT CSH C18 PREP 30x50mm, 5um; Part No. 186005423

[0336] Modifier: 0.2% Ammonium hydroxide (v / v) cone.

[0337] Method: A%H20 / B%MeCN (initial conditions) hold 0.5min, linear gradient to A%H20 / B%MeCN at 8min, ramp to 5%H20 / 95%MeCN at 8.5min, HOLD 5%H20 / 95%MeCN to lOmin.

[0338] Column: Boston Prime C18 150 x 30 mm x 5 um; Condition: water (NH3H2O+NH4HCO3)- ACN; Gradient (% organic): 0-100% optimized for each example; Flow Rate (mL / min) 25.

[0339] Column: YMC Actus Trial C18 20*100 5 mkm column; gradient mixture H2O-MeOH- Ammonia 0.1% as a mobile phase optimized for each example

[0340] Trifluoroacetic acid (acidic pH) conditions

[0341] Flow rate, 30mL / min

[0342] MS mode: MS:ESI+ scan range 165-650 daltons

[0343] PDA: 200-400nm scan range

[0344] Column: Waters Sunfire OBD C18 PREP 19x100mm, 5um; Part No. 186002567

[0345] Modifier: 0.1% Trifluoroacetic acid (v / v) cone.

[0346] Method: A%H20 / B%MeCN (initial conditions) hold 0.5min, linear gradient to A%H20 / B%MeCN at 8min, ramp to 5%H20 / 95%MeCN at 8.5min, HOLD 5%H20 / 95%MeCN to lOmin.

[0347] Flow rate, 50mL / min

[0348] MS mode: MS:ESI+ scan range 165-650 daltons

[0349] PDA: 200-400nm scan range

[0350] Column: Waters Sunfire OBD C18 PREP 30x100mm, 5um; Part No. 186002572

[0351] Modifier: 0.1% Trifluoroacetic acid (v / v) cone. Method: A%H20 / B%MeCN (initial conditions) hold 0.5min, linear gradient to A%H20 / B%MeCN at 8min, ramp to 5%H20 / 95%MeCN at 8.5min, HOLD 5%H20 / 95%MeCN to lOmin.

[0352] Flow rate, 60mL / min

[0353] MS mode: MS:ESI+ scan range 165-650 daltons

[0354] PDA: 200-400nm scan range

[0355] Column: Waters Sunfire OBD C18 PREP 30x50mm, 5um; Part No. 186002570

[0356] Modifier: 0.1% Trifluoroacetic acid (v / v) cone.

[0357] Method: A%H20 / B%MeCN (initial conditions) hold 0.5min, linear gradient to A%H20 / B%MeCN at 8min, ramp to 5%H20 / 95%MeCN at 8.5min, HOLD 5%H20 / 95%MeCN to lOmin.

[0358] Formic acid (FA, acidic pH) conditions

[0359] Column: Welch Xtimate C18 150 x 30 mm x 5 um or Phenomenex luna C18 150 x 25 mm x 10 um; Condition: water(FA)-ACN; Gradient (% organic): optimized for each example; Flow Rate (mL / min) 25.

[0360] Hydrochloric acid (HC1, acidic pH) conditions

[0361] Column: Boston Green ODS 150 x 30 mm x 5 um; Condition: water(HCl)-ACN; Gradient (% organic): 0-100% optimized for each example; Flow Rate (mL / min) 25.

[0362] Analytical SFC instrumentation specifications

[0363] Waters Acquity UPC2SFC with QDa mass spectrometer and PDA (photodiode array detector).

[0364] Analytical Screening Conditions

[0365] MS mode: MS:ESI+ scan range 100-650 daltons

[0366] PDA: 200-400nm scan range

[0367] Columns: See below

[0368] Solvent: Airgas Bone Dry CO2

[0369] Cosolvents: Methanol, Ethanol, or Isopropanol with either 0.1% Diethylamine, 0.1% Dimethylethanolamine, or neutral

[0370] Method: Isocratic conditions; typically 60% CO2: 40% cosolvent or 70% CO2: 30% cosolvent, Flow rate, 3.0mL / min.

[0371] Preparative SFC instrumentation specifications Waters PreplOO SFC with QDa mass spectrometer, PDA (photodiode array detector,) and 2767 Collection bed.

[0372] Preparative Conditions

[0373] Method: X% Cosolvent w / Y% modifier in CO2, isocratic conditions.

[0374] Flow rate: lOOmL / min

[0375] Automated back pressure regulator: 120 bar

[0376] Manual back pressure regulator: 40psi for MeOH or EtOH, 60psi for iPrOH

[0377] Column oven temperate: 40° C

[0378] MS mode: MS:ESI+ scan range 150-650 daltons

[0379] PDA: 200-400nm scan range.

[0380] SFC Columns, Analytical:

[0381] AD-H: Daicel Chiralpak AD-H, 4.6mm x 250mm, 5um, Part No 19325

[0382] AS-H: Daicel Chiralpak AS-H, 4.6mm x 250mm, 5um, Part No 20325

[0383] OD-H: Daicel Chiralpak OD-H, 4.6mm x 250mm, 5um, Part No 14325

[0384] OX-H: Daicel Chiralpak OX-H, 4.6mm x 250mm, 5um, Part No 63325

[0385] IA: Daicel Chiralpak IA, 4.6mm x 250mm, 5um, Part No 80325

[0386] IB: Daicel Chiralpak IB, 4.6mm x 250mm, 5um, Part No 81325

[0387] IC: Daicel Chiralpak IC, 4.6mm x 250mm, 5um, Part No 83325

[0388] IG: Daicel Chiralpak IG, 4.6mm x 250mm, 5um, Part No 87325

[0389] Cell-2: Phenomenex Lux Cellulose-2, 4.6mm x 150mm, 3 um, Part No. 00F-4456-E0

[0390] Cell-4: Phenomenex Lux Cellulose-4, 4.6mm x 150mm, 3 um, Part No. 00F-4490-E0

[0391] SFC Columns, Preparative:

[0392] AD-H: Daicel Chiralpak AD-H, 30mm x 250mm, 5um, Part No 19475

[0393] AS-H: Daicel Chiralpak AS-H, 30mm x 250mm, 5um, Part No 20475

[0394] OD-H: Daicel Chiralpak OD-H, 30mm x 250mm, 5um, Part No 14475

[0395] OX-H: Daicel Chiralpak OX-H, 30mm x 250mm, 5um, Part No 63475

[0396] IA: Daicel Chiralpak IA, 30mm x 250mm, 5um, Part No 80475

[0397] IB: Daicel Chiralpak IB, 30mm x 250mm, 5um, Part No 81475

[0398] IC: Daicel Chiralpak IC, 30mm x 250mm, 5um, Part No 83475

[0399] IG: Daicel Chiralpak IG, 30mm x 250mm, 5um, Part No 87475

[0400] Cell-2: Phenomenex Lux Cellulose-2, 30mm x 250mm, 5 um, Part No. 00G-4457-U0-AX

[0401] Cell -4: Phenomenex Lux Cellulose-4, 30mm x 250mm, 5 um, Part No. 00G-4491-U0-AX1H-NMR

[0402] 1H nuclear magnetic resonance (NMR) spectra were in all cases consistent with the proposed structures. The1H NMR spectra were recorded on a Bruker Avance III HD 500 MHz, Bruker Avance III 500 MHz, Bruker Avance DRX 500, Bruker Avance III 400 MHz, Varian-400 VNMRS, Varian Unityplus 400, or Varian-400 MR. Characteristic chemical shifts (d) are given in parts-per-million downfield from tetramethylsilane (for 'H-NMR) using conventional abbreviations for designation of major peaks: e.g. s, singlet; d, doublet; t, triplet; q, quartet; dd, double doublet; dt, double triplet; m, multiplet; br, broad. The following abbreviations have been used for common solvents: CDCh, deuterochloroform; DMSO-de, hexadeuterodimethyl sulfoxide; and MeOH-d4, deuteromethanol. Where appropriate, tautomers may be recorded within the NMR data; and some exchangeable protons may not be visible.

[0403] Section 2. Preparation of Intermediates

[0404] Intermediate 1

[0405] Step a: 6-Chlorothieno[2,3-b]pyridine-2-carboxylic acid (500 mg, 2.34 mmol, 1.0 eq.) was dissolved in ethanol (11.70 mL, 0.2 M) before HC1 in dioxane (4 M, 1.76 mL, 3 eq.) was added. The solution was then stirred at 80 °C for 16 hours before being concentrated to obtain ethyl 6-chlorothieno[2,3-b]pyridine-2-carboxylate (503.4 mg, 80% yield) as an off-white powder that was carried forward crude. MS: m / z 242.0 [M+H]+.

[0406] Step b: N,N-Dimethylpyrrolidin-3 -amine (190.98 mg, 1.67 mmol, 1.1 eq.) , ethyl 6- chlorothieno[2,3-b]pyridine-2-carboxylate (408.31 mg, 1.52 mmol (1.0 eq.), and DIPEA (1.38 g, 10.64 mmol, 1.85 mL, 7 eq.) were dissolved in dioxane (7.60 mL, 0.2 M) which was heated to 80 °C for 72 hours before it was dry loaded onto normal phase silica column and purified via 0-25% MeOH:DCM to obtain ethyl 6-[3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3- b]pyridine-2-carboxylate (468.0 mg, 93% yield). MS: m / z 320.0 [M+H]+.

[0407] Step c: Ethyl 6-[3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylate (482.47 mg, 1.47 mmol, 1.0 eq.) was dissolved in dioxane (515 pL, 1.42 M) and water (515 pL, 1.42 M) before lithium hydroxide (35.09 mg, 1.47 mmol, 1.0 eq.) was added. The solution was then heated at 80 °C for 16 hours before it was concentrated to obtain 6-[3- (dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylic acid (535.7 mg, 99% yield) as an off-white powder. MS: RT m / z 292.0 [M+H]+.

[0408] Intermediate 2

[0409] 6-Chlorothieno[2,3-b]pyridine-2-carboxylic acid (500 mg, 2.34 mmol, 1.0 eq) was dissolved in dichloromethane (11.70 m , 0.2 M) before 2-methylimidazo[l,2-a]pyridin-6-amine (344.45 mg, 2.34 mmol, 1.0 eq.), HATU (978.87 mg, 2.57 mmol, 1.0 eq.), and DIPEA (665.43 mg, 5.15 mmol, 896 pL) were added. The solution was then stirred at rt for 1 hour before it was concentrated and injected directly onto normal phase silica column and purified via 0-25% MeOELDCM over 3.5 min to obtain 6-chloro-N-(2-methylimidazo[l,2-a]pyridin-6- yl)thieno[2,3-b]pyridine-2-carboxamide (420.9 mg, 44% yield) as a brown solid that was carried forward as is. MS: m / z 343.0 [M+H]+.

[0410] Intermediate 3

[0411] 6-Chlorothieno[2,3-b]pyridine-2-carboxylic acid (25 mg, 117.02 pmol, 1.0 eq.), 2,7- dimethylindazol-5-amine (22.64 mg, 140.42 pmol, 1.2 eq.), HATU (48.94 mg, 128.72 pmol, 1.1 eq.), and DIPEA (33.27 mg, 257.44 pmol, 44 pL, 2.2 eq.) were dissolved in dichloromethane (585.09 pL, 0.2 M) before being stirred at rt for 2 hours. The solution was then purified via silica column chromatography (0-25% MeOH:DCM over 3.5 min) to obtain 6-chloro-N-(2,7-dimethylindazol-5-yl)thieno[2,3-b]pyridine-2-carboxamide (49.5 mg, 100% yield) as a brown solid. MS: m / z 357.0 [M+H]+.

[0412] Intermediate 4

[0413] 6-Chlorothieno[2,3-b]pyridine-2-carboxylic acid (25 mg, 117.02 pmol, 1.0 eq.), 2- methylimidazo[l,2-a]pyrazin-6-amine (20.81 mg, 140.42 pmol, 1.2 eq.), HATU (48.94 mg, 128.72 pmol, 1.1 eq.), and tri ethylamine (26.05 mg, 257.4 pmol, 36 pL, 2.2 eq.) were dissolved in dichloromethane (585.09 pL, 0.2 M) and then stirred at rt for 2 hours before it was injected directly onto normal phase silica column and purified via 0-25% MeOH:DCM over 3.5 minutes to obtain 6-chloro-N-(2-methylimidazo[l,2-a]pyrazin-6-yl)thieno[2,3-b]pyridine-2- carboxamide (25.8 mg, 61% yield) as a brown solid that was carried forward as is. MS: m / z 344.0 [M+H]+.

[0414] Intermediate 5

[0415] 6-Chlorothieno[2,3-b]pyridine-2-carboxylic acid (25 mg, 117.02 pmol, 1.0 eq.), 2,8- dimethylimidazo[l,2-a]pyrazin-6-amine (22.78 mg, 140.42 pmol, 1.2 eq.), HATU (48.94 mg, 128.72 pmol, 1.1 eq.), and Triethylamine (26.05 mg, 257.44 pmol, 35.88 pL, 2.2 eq.) were dissolved in Dichloromethane (585.09 pL, 0.2 M) then stirred at RT for 2 hours then injected crude onto normal phase silica column and purified via 0-25% MeOH:DCM over 3.5 minutes. Product elutes at 20%. Identified fractions were collected and concentrated to obtain 6-chloro-

[0416] N-(2,8-dimethylimidazo[l,2-a]pyrazin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (42.9 mg, 91% yield) as brown solid that was carried forward as is. MS: m / z 358.1 [M+H]+.

[0417] Intermediate 6

[0418] To a solution of 6-chlorothieno[2,3-b]pyridine-2-carboxylic acid (150 mg, 702.1 pmol) in DMF (20 mL) was added N-ethyl-N-isopropyl-propan-2-amine (2.11 mmol, 367 pL), [dimethylamino(triazolo[4,5-b]pyridin-3-yloxy)methylene]-dimethyl- ammonium;hexafluorophosphate (320.36 mg, 842.54 pmol) and 8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-amine (115.97 mg, 702.11 pmol) at 20°C .The reaction mixture was stirred at 20°C for Ih. The reaction mixture was quenched with water (50 ml) and it was extracted with EtOAC (40 mL x 3). The combined organic layers were dried over ISfeSCU, filtered and concentrated under reduced pressure to give a residue, which was purified by flash silica gel chromatography (from PE / EtOAc = 3 / 1 to 0 / 1, TLC: PEZEtOAc = 0 / 1) to give the 6- chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2- carboxamide (180 mg, 64% yield) as a brown solid. MS: m / z 361.2 [M+H]+.

[0419] Intermediate 7

[0420] Step a: Ethyl 6-chlorothieno[2,3-b]pyridine-2-carboxylate (265 mg, 1.02 mmol, 1.0 eq.) was dissolved in dioxane (5 mL, 0.2 M) before TEA (309.54 mg, 3.06 mmol, 426.36 pL, 3.0 eq.) and (3S)-N,N-dimethylpyrrolidin-3-amine (465.89 mg, 4.08 mmol, 518.23 mL, 4 eq.) were added. The solution was then heated to 80 °C for 16 hours before it was concentrated and dry loaded onto normal phase silica column and purified via 0-25% MeOELDCM over 12 minutes. Product elutes at 11% MeOH. Identified fractions were collected and concentrated to obtain ethyl 6-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylate (258.2 mg, 808.34 pmol, 79% yield) as a white powder. MS: m / z 320.0 [M+H]+.

[0421] Step b: Ethyl 6-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylate (258.2 mg, 842.10 pmol, 1.0 eq.) was dissolved in THF (1 mL, 0.4 M) and water (1 mL, 0.4 M) before lithium hydroxide (23.23 mg, 970.01 pmol, 1.2 eq.) was added. The solution was then heated at 60 °C for 96 hours before it was then concentrated to a white powder to obtain 6-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylic acid (241.1 mg) as an off yellow white powder that was carried forward as is. MS: m / z 292.0 [M+H]+.

[0422] Intermediate 8 Step a: Ethyl 6-chlorothieno[2,3-b]pyridine-2-carboxylate (150 mg, 552.35 pmol, 1.0 eq.) was dissolved in dioxane (1.84 mL, 0.3 M) before TEA (167.68 mg, 1.66 mmol, 230.96 pL, 3.0 eq.) and (3R)-N,N-dimethylpyrrolidin-3-amine (828.5 pmol, 105 pL, 1.5 eq.) were added. The solution was then heated to 80 C for 16 hours before it was concentrated and dry loaded onto normal phase silica and purified via 0-25% MeOELDCM over 12 minutes. Product elutes at 11% MeOH. Identified fractions were collected and concentrated to obtain ethyl 6-[(3R)-3- (dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylate (162.9 mg, 89% yield) as a white powder. MS: m / z 320.0 [M+H]+.

[0423] Step b: Ethyl 6-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylate (162.9 mg, 494.69 pmol, 1.0 eq.) was dissolved in dioxane (1.24 mL, 0.2 M) and water (1.24 mL, 0.2 M) before lithium hydroxide (13.03 mg, 544.15 pmol, 1.1 eq.) was added. The solution was then heated at 50 °C for 16 hours before it was concentrated to a white powder to obtain 6- [(3R)-3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylic acid (157.9 mg) as an off-white powder that was carried forward as is. MS: m / z 292.0 [M+H]+.

[0424] Intermediate 9

[0425] Step a: To a solution of 6-bromo-2,8-dimethyl-imidazo[l,2-a]pyrazine (22.2 g, 98.20 mmol) in toluene (250 mL) was added sodium te / 7-butoxide (16.99 g, 176.76 mmol) and BINAP (18.34 g, 29.46 mmol), then diphenylmethanimine (35.59 g, 196.40 mmol, 32.96 mL) was added under N2. The mixture was stirred at 90 °C for 16 h. The mixture was then diluted with EtOAc (50 mL) and filtered. The filtrate was evaporated in vacuo and the crude product was purified by flash column chromatography (silica; EtOAc in petroleum 0% to 100%). The desired product was collected, and the solvents were evaporated in vacuo to yield N- (diphenylmethylene)-2,8-dimethylimidazo[l,2-a]pyrazin-6-amine (25.2 g) as ayellow oil. MS: m / z 327.1 [M+H]+.

[0426] Step b: To a mixture of A-(2,8-dimethylimidazo[l,2-a]pyrazin-6-yl)- 1,1 -diphenylmethanimine (25.2 g, 77.21 mmol) in THF (150 mL) was added HC1 (2 M, 120 mL) at 20 °C. The mixture was stirred at 20 °C for 1 h. The solution was concentrated and then dissolved in water (150 mL). The mixture was extracted with DCM (200 mL x 3). The aqueous phase was neutralized with 2 N NaOH (to pH = 13) and extracted with DCM (200 mL x 3). The combined organic layers were washed with brine (200 mL), dried over ISfeSCU, filtered and concentrated to give 2,8-dimethylimidazo[l,2-a]pyrazin-6-amine (8.2 g, 50.56 mmol, 65% yield) as a brown solid. MS: m / z 163.1 [M+H]+.

[0427] Step a: To a solution of 6-bromo-8-fluoro-2-methyl-imidazo[l,2-a]pyridine (1 g, 4.37 mmol), diphenylmethanimine (1.19 g, 6.55 mmol, 1.10 mL) and (5-diphenylphosphanyl-9,9-dimethyl- xanthen-4-yl)-diphenyl-phosphane (505.24 mg, 873.18 pmol) in dioxane (30 mL) was added cesium carbonate (4.27 g, 13.10 mmol) and Pd2(dba)s (399.79 mg, 436.59 pmol) at 20 °C under N2. The reaction was stirred at 100 °C for 14 hours. The mixture was filtered, and the filtrate was evaporated under vacuum. The residue was purified by column chromatography (PE:EtOAc from 5: 1 to 1 : 1) to give N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-l,l- diphenyl-methanimine (1.3 g, 3.95 mmol, 90% yield) as an off-white solid. MS: m / z 330.2 [M+H]+.

[0428] Step b: To a solution of A-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-l,l-diphenyl- methanimine (1.3 g, 3.95 mmol) in HC1 (4 M, 8 mL) was added HC1 (143.91 mg, 3.95 mmol, 0.5 mL) at 20 °C. The reaction was stirred at 20 °C for 14 hours. The solution was evaporated under vacuum, and the residue was adjusted to pH = 7 with saturated aq. NaHCCL (100 mL), extracted with DCM (50 mL x 3). The combined organic layers were dried over ISfeSCh and filtered. The filtrate was evaporated under vacuum. The residue was purified by column chromatography (PE:EtOAc from 3 : 1 to 0: 1) to give 8-fluoro-2-methyl-imidazo[l,2-a]pyridin- 6-amine (470 mg, 2.85 mmol, 72% yield) as a brown solid. MS: m / z 166.1 [M+H]+. Step a: A mixture ofPd2(dba)s (122.05 mg, 133.28 pmol), 6-bromo-2,8-dimethyl-imidazo[l,2- a]pyridine (300 mg, 1.33 mmol), sodium / c / 7-butoxide (256.18 mg, 2.67 mmol) and [l-(2- diphenylphosphanyl-l-naphthyl)-2-naphthyl]-diphenyl-phosphane (165.98 mg, 266.57 pmol) was added toluene (6 mL) and diphenylmethanimine (483.11 mg, 2.67 mmol, 447.32 pL) under N2. The reaction mixture was stirred at 130 °C for 12 h. The mixture was concentrated, and the residue was purified by column chromatography (0% to 70% EtOAc in heptane) to give N- (2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-l,l-diphenyl-methanimine (455.1 mg) as paleyellow solid. MS: m / z 326.1 [M+H]+.

[0429] Step b: To a mixture of A-(diphenylmethylene)-2,8-dimethylimidazo[l,2-a]pyridin-6-amine (95.4 mg, 293.17 pmol) in THF (2 mL) was added hydrochloric acid (4 M in dioxane, 219.88 pL) at 20 °C. The mixture was stirred at 20 °C for 1 h. The mixture was concentrated under vacuum and then DCM (1 mL) was added. The mixture was filtered. The precipitate was collected to give 2,8-dimethylimidazo[l,2-a]pyridin-6-amine (52.4 mg, 265.10 pmol, 90% yield, Hydrochloride) as a pale-yellow solid. MS: m / z 162.1 [M+H]+.

[0430] Step a: To a mixture of 6-bromo-8-methoxy-2-methylimidazo[l,2-a]pyridine (800 mg, 3.32 mmol) in toluene (30 mL) was added diphenylmethanimine (902.09 mg, 4.98 mmol, 835.27 pL), sodium terLbutoxide (574.03 mg, 5.97 mmol), Pd2(dba)s (303.87 mg, 331.83 pmol) and [l-(2-diphenylphosphanyl-l-naphthyl)-2-naphthyl]-diphenyl-phosphane (413.25 mg, 663.67 pmol) at 20°C. The mixture was stirred at 130°C for 16 h under N2 atmosphere. The mixture was filtered, and the filtrate was concentrated. Then water (50 mL) was added, and the mixture was extracted with EtOAc (50 mL). The organic layer was washed with brine (50 mL), dried over Na2SO4, filtered and concentrated. The crude material was purified by chromatography (petroleum ether / EtOAc = 5 / 1 to 0 / 1) to yield N-(diphenylmethylene)-8-methoxy-2- methylimidazo[l,2-a] pyridin-6-amine (1 g, 2.93 mmol, 88% yield) as brown oil. MS: m / z 342.3 [M+H]+. Step b: To a mixture of A-(diphenylmethylene)-8-methoxy-2-methylimidazo[l,2-a]pyridin-6- amine (1 g, 2.93 mmol) in THF (10 mL) was added HC1 (2 M, 2.71 mL) at 20° C. The mixture was stirred at 20°C for 2 h under N2 atmosphere. The mixture was concentrated under reduced pressure. The water phase was adjusted to pH 3-4 with HC1 (2 N) and extracted with DCM (50 mL). The water phase was then added sat. NaOH (1 N) to adjust pH to 14 and extracted with DCM (100 mL). The organic layer was washed with brine (80 mL), dried over ISfeSCL, filtered and concentrated under reduced pressure to yield 8-methoxy-2-methylimidazo [l,2-a]pyridin- 6-amine (200 mg, 1.13 mmol, 39% yield) as a yellowish-brown solid. MS: m / z 178.2 [M+H]+. Intermediate 13

[0431] Step a: To a mixture of 5-bromo-7-fluoro-2-methyl-indazole (100 mg, 436.59 pmol), rac- BINAP-Pd-G3 (43.31 mg, 43.66 pmol) and sodium / c / V-butoxide (83.92 mg, 873.18 pmol) was added toluene (1 mL) and diphenylmethanimine (94.95 mg, 523.91 pmol, 87.92 pL) under N2 atmosphere. The reaction mixture was stirred at 110 °C for 12 h. The reaction mixture was concentrated, and the residue was purified by column flash chromatography (0% to 60% EtOAc in heptane) to give A-(7-fluoro-2-methyl-indazol-5-yl)-l,l-diphenyl-methanimine (107.3 mg, 325.77 pmol, 74% yield) as a pale-yellow solid. MS: m / z 330.1 [M+H]+.

[0432] Step b: To a mixture of A-(7-fluoro-2-methyl-indazol-5-yl)-l,l-diphenyl-methanimine (107.3 mg, 325.77 pmol) in THF (2 mL) was added hydrochloric acid (4 M in dioxane, 244.33 pL) at 20 °C. The mixture was stirred at 20 °C for 1 h. The mixture was concentrated and then water was added. The mixture was extracted with DCM (5 mL x 3). Aqueous phase neutralized with 2 N NaOH to pH = 11 and the residue was extracted with DCM (5 mL x 3). The combined organic layers were washed with brine, dried over MgSO4, filtered and concentrated to give 7- fhioro-2-methyl-indazol-5-amine (36.1 mg, 218.57 pmol, 67% yield) as a pale-yellow solid. MS: m / z 166.0 [M+H]+. 8-methoxy-2-methyl-imidazo[l,2-a]pyridin-6-amine (91.24 mg, 514.88 pmol) and 6- chlorothieno[2,3-b]pyridine-2-carboxylic acid (100 mg, 468.07 pmol) were dissolved in dioxane (2 mL) before 2,4,6-tripropyl-l,3,5,2,4,6trioxatriphosphinane 2,4,6-trioxide (446.80 mg, 702.11 pmol, 417.96 pL, 50% purity) was added. The reaction mixture was stirred at 60 °C for 16 h and then concentrated under vacuum. The residue was purified by column flash chromatography (0% to 10% MeOH in DCM) to give 6-chloro-N-(8-methoxy-2-methyl- imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (145.3 mg, 389.72 pmol, 83.26% yield). MS: m / z 373.1 [M+H]+.

[0433] Intermediate 15

[0434] 6-chlorothieno[2,3-b]pyridine-2-carboxylic acid (422.11 mg, 1.98 mmol) was dissolved in dioxane (10.87 mL) before 2,8-dimethylimidazo[l,2-a]pyrazin-6-amine (352.5 mg, 2.17 mmol) , T3P (3.77 g, 5.93 mmol, 2.66 mL, 50% purity) , and TEA (599.79 mg, 5.93 mmol, 826.15 pL) were added. The solution was heated to 60 °C for 16 hours and then concentrated before being purified by column flash chromatography (0-15% MeOELDCM over 12 minutes). Identified fractions were collected and concentrated to yield 6-chloro-N-(2,8- dimethylimidazo[l,2-a]pyrazin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (661.1 mg, 1.81 mmol, 91.64% yield, 98% purity) as a tannish white plastic solid. MS: m / z 358.1 [M+H]+. 1H NMR (400 MHz, DMSO-dd) 5 ppm 2.38 - 2.41 (m, 3 H) 2.73 - 2.75 (m, 3 H) 7.58 - 7.65 (m, 1 H) 7.96 - 8.01 (m, 1 H) 8.43 - 8.49 (m, 1 H) 8.56 - 8.61 (m, 1 H) 9.12 - 9.17 (m, 1 H) 11.31 - 11.36 (m, 1 H).

[0435] Intermediate 16

[0436]

[0437] Step a: A mixture of 5-bromo-2,3-difluoro-4-methoxy-benzaldehyde (20.4 g, 81.27 mmol), O- methylhydroxylamine hydrochloride (8.82 g, 105.65 mmol) and K2CO3 (24.71 g, 178.79 mmol) in DME (200 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 50 °C for 16 hr under N2 atmosphere. The reaction mixture was filtered and concentrated to give (E)-l-(5-bromo-2,3-difluoro-4-methoxy-phenyl)-N-methoxy- methanimine (22.1 g, 78.91 mmol, 97.10% yield). To a solution of (E)-l-(5-bromo-2,3- difluoro-4-methoxy-phenyl)-N-methoxy-methanimine (2.6 g, 9.28 mmol) in THF (30 mL) was added NH2NH2 H2O (9.89 g, 197.56 mmol, 8.2 mL) at 25°C under N2 atmosphere. The mixture was stirred at 80 °C under N2 for 90 hours. The mixture was diluted with water (100 mL) and extracted with EtOAc (100 mL x 3). The pH of aqueous phase was adjusted to neutral. The combined organic layers were washed with brine (150 mL), dried over Na2SO4, filtered and concentrated. The residue was purified by column chromatography (SiCL, Petroleum ether / Ethyl acetate=100 / l to 9 / 2) to give 5-bromo-7-fluoro-6-methoxy-lH-indazole (2 g, 8.16 mmol, 87.92% yield) as a yellowish solid. MS: m / z 246.9 [M+H]+.

[0438] Step b: A solution of 5-bromo-7-fluoro-6-methoxy-lH-indazole (6.5 g, 26.53 mmol) in EtOAc (100 mL) was added trimethyloxonium tetrafluoroborate (5.88 g, 39.79 mmol). The reaction was stirred at 25 °C for 3 hr. The mixture was filtered and concentrated to give 5-bromo-7- fhioro-6-methoxy-2-methyl-indazole (5.9 g, 22.77 mmol, 85.85% yield). MS: m / z 259.0 [M+H]+.

[0439] Step c: A mixture of 5-bromo-7-fluoro-6-methoxy-2-methyl-indazole (5.9 g, 22.77 mmol), diphenylmethanimine (6.19 g, 34.16 mmol, 5.73 mL), sodium 2-methylpropan-2-olate (6.57 g, 68.32 mmol), [2-(2-aminophenyl)phenyl]-methylsulfonyloxy-palladium ditert-butyl-[2-(2,4,6- triisopropylphenyl)phenyl]phosphane (1.81 g, 2.28 mmol) in dioxane (100 mL) was degassed and purged with N2 for 3 times. The mixture was stirred at 90 °C for 3 hr under N2 atmosphere. The mixture was concentrated and purified with column chromatography (Si O2, Petroleum ether / Ethyl acetate=100 / l to 9 / 2) to yield N-(7-fluoro-6-methoxy-2-methyl-indazol-5-yl)-l,l- diphenyl-methanimine (5.7 g, 15.86 mmol, 69.64% yield). MS: m / z 360.1 [M+H]+.

[0440] Step d: A mixture of N-(7-fluoro-6-methoxy-2-m ethyl-indazol-5-yl)- 1,1 -diphenyl - methanimine (5.7 g, 15.86 mmol) and HCl / EtOAc (2 M, 200.00 mmol, 100 mL) in EtOAc (1000 mL) was stirred at 25 °C for 1 hr. The mixture was filtered, and the precipitates were washed with EtOAc to give 7-fluoro-6-methoxy-2-methyl-indazol-5-amine (3.91 g, 14.58 mmol, 91.95% yield, Hydrochloride). MS: m / z 268.1 [M+H]+. 'H NMR (400MHz, MeOD) 5 ppm: 9.34 - 9.31 (m, 1H), 7.92 (s, 1H), 7.50 - 7.44 (m, 2H), 7.34 - 7.27 (m, 3H), 2.88 - 2.86 (m, 3H), 2.53 (s, 3H).

[0441] Intermediate 17

[0442] Step a: To a solution of 5-bromo-4-methoxy-pyridin-2-amine (57 g, 280.74 mmol) in DCM (300 mL) and H2O (300 mL) was added l-(chloromethyl)-4-fluoro-l,4- diazoniabicyclo[2.2.2]octane di tetrafluorob orate (198.91 g, 561.48 mmol), the mixture was stirred at 25 °C for 3 hours.

[0443] The aqueous phase was adjusted to pH 8 with NaHCCh and extracted with DCM (200 mL x 3). The organic phase was combined and dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by column chromatography (SiCL, Petroleum ether / Ethyl acetate=100 / l to 4 / 1) to give 5-bromo-3-fluoro-4-methoxy-pyridin-2-amine (5.6 g, 25.34 mmol, 9.02% yield) as a orange red solid. MS: m / z 222.8 [M+H]+.

[0444] Step b: To a solution of 5-bromo-3-fluoro-4-methoxy-pyridin-2-amine (4.5 g, 20.36 mmol) in EtOH (50 mL) was added l-chloropropan-2-one (18.78 g, 202.97 mmol, 16.16 mL). The mixture was stirred at 100 °C for 8 hours. The mixture was concentrated in vacuo and redissolved in H2O (100 mL), and adjusted to pH 8 with NaHCCL. Then the mixture was reextracted with ethyl acetate (3 x 60 mL). The combined organic phase was washed with brine (30 mL), dried over ISfeSCU and concentrated to give 6-bromo-8-fluoro-7-methoxy-2-methyl- imidazo[l,2-a]pyridine (4 g, crude) as a brown oil. MS: m / z 258.9 [M+H]+.

[0445] Step c: A mixture of 6-bromo-8-fluoro-7-methoxy-2-methyl-imidazo[l,2-a]pyridine (6.2 g, 23.93 mmol), acetamide (14.14 g, 239.31 mmol), CS2CO3 (15.59 g, 47.86 mmol) in dioxane (100 mL) was degassed and purged with N2 for 3 times, and then BrettPhos Pd G3 (6.51 g, 7.18 mmol) was added. The mixture was stirred at 100 °C for 2 hours under N2. The mixture was diluted with H2O (200 ml), and extracted with ethyl acetate (100 ml x 4). The organic phase were combined and dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by column chromatography (SiO2, Petroleum ether / Ethyl acetate=100 / l to 3 / 2) to give N-(8-fluoro-7-methoxy-2-methyl-imidazo[l,2-a]pyridin-6- yl)acetamide (4.3 g, 18.13 mmol, 75.74% yield) as a yellow solid. MS: m / z 237.9 [M+H]+.

[0446] Step d: To a solution of N-(8-fluoro-7-methoxy-2-methyl-imidazo[l,2-a]pyridin-6- yl)acetamide (4.1 g, 17.28 mmol) in MeOH (60 mL) was added HC1 (12 M, 129.62 mmol, 10.80 mL). The mixture was stirred at 60 °C for 3 hours. The reaction was concentrated, diluted with H2O (100 ml) and adjusted to pH 7 with NaHCCL. The mixture was extracted with ethyl acetate (100 ml x 3). The organic phases were combined, dried over ISfeSCh, filtered and concentrated under reduced pressure. The residue was purified by column chromatography (SiO2, Petroleum ether / Ethyl acetate=100 / l to 0 / 1) to give 8-fluoro-7-methoxy-2-methyl- imidazo[l,2-a]pyridin-6-amine (1.8 g, 9.22 mmol, 53.36% yield) as a gray solid. MS: m / z 195.9 [M+H]+.

[0447] Intermediate 18

[0448] 6-methoxy-2-methyl-indazol-5-amine (99.53 mg, 561.69 pmol) and 6-chlorothieno[2,3- b]pyridine-2-carboxylic acid (100 mg, 468.07 pmol) were dissolved in dioxane (2 mL) before 2,4,6-tripropyl-l,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide (446.80 mg, 702.11 pmol, 417.96 pL, 50% purity) was added. Thereaction mixture was stirred at 40 °C for 16 h and then concentrated under vacuum. The residue was purified by column flash chromatography (0% to 10% MeOH in DCM) to give 6-chloro-N-(6-methoxy-2-methyl-indazol-5-yl)thieno[2,3- b]pyridine-2-carboxamide (138.6 mg, 371.75 pmol, 79.42% yield). MS: m / z 373.1 [M+H]+.

[0449] Intermediate 19

[0450] To a mixture of 6-chlorothieno[2,3-b]pyridine-2-carboxylic acid (140 mg, 655.31 pmol) and 7-fluoro-6-methoxy-2-methyl-indazol-5-amine (127.91 mg, 655.31 pmol) in DMF (3 mL) was added HATU (373.75 mg, 982.96 pmol) and DIPEA (127.04 mg, 982.96 pmol, 171.21 pL) in one portion at 25°C .The mixture was stirred at 25 °C for 90 mins and then concentrated in reduced pressure. The suspension was filtered and solid was collected, washed with EtOAc (50 mL x 5). The residue was evacuated under vacuum to yield 6-chloro-N-(7-fluoro-6- methoxy-2-methyl-indazol-5-yl)thieno[2,3-b]pyridine-2-carboxamide (148.5 mg, 379.97 pmol, 57.98% yield) as a yellow solid. MS: m / z 391.0 [M+H]+.

[0451] Intermediate 20

[0452] To a solution of 6-chlorothieno[2,3-b]pyridine-2-carboxylic acid (72.34 mg, 338.60 pmol) and 6-methoxy-2-methyl-pyrazolo[l,5-a]pyridin-5-amine (60 mg, 338.60 pmol) in pyridine (3 mL) was added T4P (3 mL) . The reaction was stirred at 20°C for 2 h and then was quenched, filtered and concentrated under reduced pressure to give 6-chloro-N-(6-methoxy-2-methyl- pyrazolo[l,5-a]pyridin-5-yl)thieno[2,3-b]pyridine-2-carboxamide (80 mg, 132.93 pmol, 39.26% yield, 61.95% purity) as a yellow solid. MS: m / z 373.1 [M+H]+.

[0453] Intermediate 21 Step a: 5-bromo-2,7-dimethyl-pyrazolo[3,4-c]pyridine (400 mg, 1.77 mmol), sodium;2- methylpropan-2-olate (340.08 mg, 3.54 mmol) and Pd-binap-G3 (175.52 mg, 176.93 pmol) was added in an microwave vial, evacuated under vacuum and refilled with N2 three times. Diphenylmethanimine (384.79 mg, 2.12 mmol, 356.29 pL) and toluene (10 mL) were then added under N2. The reaction mixture was stirred at 110 °C for 12 h. Then the reaction mixture was concentrated, and the residue was purified by column chromatography (0% to 100% EA / heptane) to give N-(2,7-dimethylpyrazolo[3,4-c]pyridin-5-yl)-l,l-diphenyl-methanimine (454.9 mg, 1.39 mmol, 78.77% yield). MS: m / z 327.1 [M+H]+.

[0454] Step b: To a mixture of N-(2,7-dimethylpyrazolo[3,4-c]pyridin-5-yl)-l,l-diphenyl- methanimine (454.9 mg mg, 1.39 mmol) inTHF (4 mL) was added hydrochloric acid (4 M, 1.05 mL) at 20 °C. The reaction was stirred at 20 °C for 1 h. The mixture was concentrated, then dioxane and toluene were added. The mixture was filtered and the precipitates were collected to give 2,7-dimethylpyrazolo[3,4-c]pyridin-5-amine (245.6 mg, 1.24 mmol, 88.71% yield, hydrochloride) as a pale yellow solid. MS: m / z 163.1 [M+H]+.JH NMR (400 MHz, DMSO-d ) 5 ppm 2.90 (s, 3 H), 4.28 (s, 3 H), 6.94 (s, 1 H), 8.42 (s, 1 H).

[0455] Intermediate 22

[0456] To a solution of 6-chlorothieno[2,3-b]pyridine-2-carboxylic acid (200 mg, 936.15 pmol) in DMF (10 mL) was added 8-fluoro-7-methoxy-2-methyl-imidazo[l,2-a]pyridin-6-amine (182.73 mg, 936.15 pmol) , DIPEA (362.97 mg, 2.81 mmol, 489.18 pL) and HATU (427.14 mg, 1.12 mmol) .The reaction mixture was stirred at 25 °C for 2 hours. The reaction mixture was diluted with H2O (5 mL) and extracted with DCM (10 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (from PEZEtOAc = 10 / 1 to 0 / 1) to yield 6-chloro-N-(8-fluoro-7-methoxy-2-methyl-imidazo[l,2-a]pyridin-6- yl)thieno[2,3-b]pyridine-2-carboxamide (350 mg, 888.39 pmol, 94.90% yield, 99.2% purity) as a yellow solid. MS: m / z 391.0 [M+H]+.

[0457] Intermediate 23

[0458] 7-fluoro-2-methyl-indazol-5-amine (83.34 mg, 504.59 pmol, Hydrochloride) and 6- chlorothieno[2,3-b]pyridine-2-carboxylic acid (100 mg, 458.71 pmol) were dissolved in dioxane (2 mL) before 2,4,6-tripropyl-l,3,5,2,4,6trioxatriphosphinane 2,4,6-trioxide (437.86 mg, 688.07 pmol, 409.60 pL, 50% purity) was added. The reaction mixture was stirred at 40 °C for 16 h and then concentrated under vacuum. The residue was purified by column flash chromatography (0% to 10% MeOH in DCM) to give 6-chloro-N-(7-fluoro-2-methyl-indazol- 5-yl)thieno[2,3-b]pyridine-2-carboxamide (105.6 mg, 292.69 pmol, 63.81% yield) as a white solid. MS: m / z 361.1 [M+H]+.

[0459] Intermediate 24

[0460] 2,7-dimethylpyrazolo[3,4-c]pyridin-5-amine (111.58 mg, 561.69 pmol, Hydrochloride) and 6- chlorothieno[2,3-b]pyridine-2-carboxylic acid (100 mg, 468.08 pmol) were dissolved in dioxane (2 mL) before 2,4,6-tripropyl-l,3,5,2,4,6trioxatriphosphinane 2,4,6-trioxide (446.80 mg, 702.11 pmol, 417.96 pL, 50% purity) was added. The reaction mixture was stirred at 40 °C for 16 h and then concentrated under vacuum. The residue was purified by column flash chromatography (0% to 10% MeOH in DCM) to give 6-chloro-N-(2,7-dimethylpyrazolo[3,4- c]pyridin-5-yl)thieno[2,3-b]pyridine-2-carboxamide (138.7 mg, 387.63 pmol, 82.81% yield) as a white solid. MS: m / z 358.1 [M+H]+

[0461] Intermediate 25

[0462] Step a: To a mixture of 5-bromo-7-fluoro-2-methyl-indazole (100 mg, 436.59 pmol), rac- BINAP-Pd-G3 (43.31 mg, 43.66 pmol) and sodium / c / V-butoxide (83.92 mg, 873.18 pmol) was added toluene (1 mL) and diphenylmethanimine (94.95 mg, 523.91 pmol, 87.92 pL) under N2 atmosphere. The reaction mixture was stirred at 110 °C for 12 h. The reaction mixture was concentrated, and the residue was purified by column flash chromatography (0% to 60% EtOAc in heptane) to give A-(7-fluoro-2-methyl-indazol-5-yl)- 1,1 -diphenyl -methanimine (107.3 mg, 325.77 pmol, 74% yield) as a pale-yellow solid. MS: m / z 330.1 [M+H]+.

[0463] Step b: To a mixture of 7V-(7-fluoro-2-methyl-indazol-5-yl)-l,l-diphenyl-methanimine (107.3 mg, 325.77 pmol) in THF (2 mL) was added hydrochloric acid (4 M in dioxane, 244.33 pL) at 20 °C. The mixture was stirred at 20 °C for 1 h. The mixture was concentrated and then water was added. The mixture was extracted with DCM (5 mL x 3). Aqueous phase neutralized with 2 N NaOH to pH = 11 and the residue was extracted with DCM (5 mL x 3). The combined organic layers were washed with brine, dried over MgSCU, filtered and concentrated to give 7- fhioro-2-methyl-indazol-5-amine (36.1 mg, 218.57 pmol, 67% yield) as a pale-yellow solid. MS: m / z 166.0 [M+H]+.

[0464] Intermediate 26

[0465] Step a: A mixture of 5-bromo-2,3-difluoro-4-methoxy-benzaldehyde (20.4 g, 81.27 mmol), O- methylhydroxylamine hydrochloride (8.82 g, 105.65 mmol) and K2CO3 (24.71 g, 178.79 mmol) in DME (200 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 50 °C for 16 hr under N2 atmosphere. The reaction mixture was filtered and concentrated to give (E)-l-(5-bromo-2,3-difluoro-4-methoxy-phenyl)-N-methoxy- methanimine (22.1 g, 78.91 mmol, 97.10% yield). To a solution of (£)-l-(5-bromo-2,3- difluoro-4-methoxy-phenyl)-N-methoxy-methanimine (2.6 g, 9.28 mmol) in THF (30 mL) was added NH2NH2H2O (9.89 g, 197.56 mmol, 8.2 mL) at 25°C under N2 atmosphere. The mixture was stirred at 80 °C under N2 for 90 hours. The mixture was diluted with water (100 mL) and extracted with EtOAc (100 mL x 3). The pH of aqueous phase was adjusted to neutral. The combined organic layers were washed with brine (150 mL), dried over Na2SO4, filtered and concentrated. The residue was purified by column chromatography (SiCL, Petroleum ether / Ethyl acetate=100 / l to 9 / 2) to give 5-bromo-7-fluoro-6-methoxy-lH-indazole (2 g, 8.16 mmol, 87.92% yield) as a yellowish solid. MS: m / z 246.9 [M+H]+.

[0466] Step b: A solution of 5-bromo-7-fluoro-6-methoxy-lH-indazole (6.5 g, 26.53 mmol) in EtOAc (100 mL) was added trimethyloxonium tetrafluoroborate (5.88 g, 39.79 mmol). The reaction was stirred at 25 °C for 3 hr. The mixture was filtered and concentrated to give 5-bromo-7- fhioro-6-methoxy-2-methyl-indazole (5.9 g, 22.77 mmol, 85.85% yield). MS: m / z 259.0 [M+H]+.

[0467] Step c: A mixture of 5-bromo-7-fluoro-6-methoxy-2-methyl-indazole (5.9 g, 22.77 mmol), diphenylmethanimine (6.19 g, 34.16 mmol, 5.73 mL), sodium 2-methylpropan-2-olate (6.57 g, 68.32 mmol), [2-(2-aminophenyl)phenyl]-methylsulfonyloxy-palladium ditert-butyl-[2-(2,4,6- triisopropylphenyl)phenyl]phosphane (1.81 g, 2.28 mmol) in dioxane (100 mL) was degassed and purged with N2 for 3 times. The mixture was stirred at 90 °C for 3 hr under N2 atmosphere. The mixture was concentrated and purified with column chromatography (Si O2, Petroleum ether / Ethyl acetate=100 / l to 9 / 2) to yield N-(7-fluoro-6-methoxy-2-methyl-indazol-5-yl)-l,l- diphenyl-methanimine (5.7 g, 15.86 mmol, 69.64% yield). MS: m / z 360.1 [M+H]+.

[0468] Step d: A mixture of N-(7-fluoro-6-methoxy-2-methyl-indazol-5-yl)- 1,1 -diphenylmethanimine (5.7 g, 15.86 mmol) and HCl / EtOAc (2 M, 200.00 mmol, 100 mL) in EtOAc (1000 mL) was stirred at 25 °C for 1 hr. The mixture was filtered, and the precipitates were washed with EtOAc to give 7-fluoro-6-methoxy-2-methyl-indazol-5-amine (3.91 g, 14.58 mmol, 91.95% yield, Hydrochloride). MS: m / z 268.1 [M+H]+. 'H NMR (400MHz, MeOD) 5 ppm: 9.34 - 9.31 (m, 1H), 7.92 (s, 1H), 7.50 - 7.44 (m, 2H), 7.34 - 7.27 (m, 3H), 2.88 - 2.86 (m, 3H), 2.53 (s, 3H).

[0469] Intermediate 27 To a solution of 6-chlorothieno[2,3-b]pyridine-2-carboxylic acid (150 mg, 702.1 pmol) in DMF (20 mL) was added N-ethyl-N-isopropyl-propan-2-amine (2.11 mmol, 367 pL), [dimethylamino(triazolo[4,5-b]pyridin-3-yloxy)methylene]-dimethyl- ammonium;hexafluorophosphate (320.36 mg, 842.54 pmol) and 8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-amine (115.97 mg, 702.11 pmol) at 20°C .The reaction mixture was stirred at 20°C for Ih. The reaction mixture was quenched with water (50 ml) and it was extracted with EtOAC (40 mL x 3). The combined organic layers were dried over ISfeSCU, filtered and concentrated under reduced pressure to give a residue, which was purified by flash silica gel chromatography (from PE / EtOAc = 3 / 1 to 0 / 1, TLC: PEZEtOAc = 0 / 1) to give the 6- chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2- carboxamide (180 mg, 64% yield) as a brown solid. MS: m / z 361.2 [M+H]+.

[0470] Intermediate 28

[0471] A mixture of 5-chlorothiazolo[5,4-b]pyridine-2-carboxylic acid (500 mg, 2.19 mmol) and 6- methoxy-2-methyl-2H-indazol-5-amine (426.24 mg, 2.41 mmol) in THF (10 mL) was added LiHMDS (1 M, 4.37 mmol, 4.37 mL) under N2. The mixture was stirred at 60 °C for 16 hours. The mixture was quenched with MeOH (5 mL) and filtered. The filter cake was collected to give compound 3 (600 mg, 73.40% yield) as a yellow solid. IH NMR: (400 MHz, DMSO-d6) 5 ppm: 9.91-10.05 (m, IH), 8.71 (d, J = 8.8 Hz, IH), 8.52 (s, IH), 8.29 (s, IH), 7.84 (d, J = 8.8 Hz, IH), 7.16 (s, IH), 4.06-4.08 (m, 3H), 3.99 (s, 3H).

[0472] Intermediate 29

[0473] To a solution of 5-chlorothiazolo[5,4-b]pyridine-2-carboxylic acid (400 mg, 1.86 mmol), 7- fhioro-2-methyl-2H-indazol-5-amine (307.82 mg, 1.86 mmol) and HATU (1.06 g, 2.80 mmol) in DCM (20 mL) was added DIPEA (481.74 mg, 3.73 mmol, 649.24 pL). The mixture was stirred at 25 °C for 2 h. LCMS showed that desired mass was detected. The mixture was concentrated to give a residue, which was purified by Flash column (Petroleum ether / EtOAc = 1 / 0 to 1 / 1) to give 5-chloro-N-(7-fluoro-2-methyl-2H-indazol-5-yl)thiazolo[5,4-b]pyridine-2- carboxamide (620 mg, 1.71 mmol, 91.95% yield) as a yellow solid. LCMS: ([M+H] = 362.0) 1H NMR: (400 MHz, DMSO-d6) 5 ppm: 11.30 (s, 1H), 8.64 (d, J=8.8 Hz, 1H), 8.50 (d, J=2.8 Hz, 1H), 8.21 (d, J=1.6 Hz, 1H), 7.83 (d, J=8.8 Hz, 1H), 7.58 (dd, J=13.6 Hz, 1.6 Hz, 1H), 4.19 (s, 3H).

[0474] Intermediate 30

[0475] To a solution 5-chlorothiazolo[5,4-b]pyridine-2-carboxylic acid (70 mg, 326.14 pmol) and 8- methoxy-2-m ethyl -imidazo[l,2-a]pyrazin-6-amine (87.17 mg, 489.22 pmol) in T4P (4 mL) and Pyridine (4 mL) . The reaction was stirred at 25°C for 2 h. The reaction was quenched with Na2SO3 saturated solution, then filtered and concentrated to give the compound 5-chloro- N-(8-methoxy-2-methyl-imidazo[l,2-a]pyrazin-6-yl)thiazolo[5,4-b]pyridine-2-carboxamide (80 mg, 201.34 pmol, 61.73% yield, 94.33% purity) as a brown solid. LC-MS: m / z 358.1 [M+H]+. 1H NMR (400 MHz, DMS()-d6) 5 ppm 2.38 - 2.41 (m, 3 H) 2.73 - 2.75 (m, 3 H) 7.58 - 7.65 (m, 1 H) 7.96 - 8.01 (m, 1 H) 8.43 - 8.49 (m, 1 H) 8.56 - 8.61 (m, 1 H) 9.12 - 9.17 (m, 1 H) 11.31 - 11.36 (m, 1 H).

[0476] Section 3. Synthetic Processes to Prepare Compounds of the Disclosure

[0477] Example 1 - Compound 2 6-Chloro-N-(2,7-dimethylindazol-5-yl)thieno[2,3-b]pyridine-2-carboxamide (25.78 mg, 69.36 pmol, 1.0 eq.) was dissolved in dioxane (346.80 pL) and potassium tert-butoxide (31.13 mg, 277.44 pmol) was added. (2R,6S)-2,6-dimethylpiperazine (11.9 mg, 104.04 pmol, 1.5 eq.) was then added to the solution, which was then heated at 120 °C for 6 hours before being concentrated then taken back up in DMSO, filtered, and purified via preparative HPLC (Column: Sunfire C18 100 x 19 mm, 5 mm; Mobile phase A: MeCN; Mobile phase B: H2O; Modifier: 0.1% TFA) to obtain N-(2,7-dimethylindazol-5-yl)-6-[(3 S,5R)-3, 5- dimethylpiperazin-l-yl]thieno[2,3-b]pyridine-2-carboxamide (9.7 mg, 25% yield) as an orange oil. MS: m / z 435.3 [M+H]+; RT: 1.17 min (Method 3). 'HNMR (600 MHz, DMSO-d6) 8 ppm

[0478] 1.19 (br dd, J=11.25, 6.68 Hz, 2 H) 1.29 - 1.34 (m, 6 H) 2.52 - 2.55 (m, 3 H) 2.83 - 2.89 (m, 2 H) 4.11 - 4.19 (m, 3 H) 4.58 - 4.65 (m, 2 H) 7.24 - 7.27 (m, 1 H) 7.96 - 8.00 (m, 1 H) 8.13 -

[0479] 8.19 (m, 2 H) 8.25 - 8.29 (m, 1 H) 8.52 - 8.59 (m, 1 H) 9.11 - 9.17 (m, 1 H) 10.22 - 10.25 (m, 1 H).

[0480] Using the procedure described for Example 1 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0481] Example 2 - Compound 1

[0482] N,N-Dimethylpyrrolidin-3 -amine (42.64 mg, 373.39 pmol, 2.0 eq.), 6-chloro-N-(2- methylimidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (100 mg, 186.70 pmol, 1.0 eq.), and DIPEA (560.09 pmol, 97 pL, 3.0 eq.) were dissolved in dioxane (933 pL, 0.2 M) and heated to 80°C for 16 hours before it was concentrated then taken back up in a minimal amount of DMSO, filtered, and submitted to reverse phase HPLC purification (Column: Sunfire C18 100 x 19 mm, 5 mm; Mobile phase A: MeCN; Mobile phase B: H2O; Modifier: 0.1% TFA) to obtain 6-[3-(dimethylamino)pyrrolidin-l-yl]-N-(2- methylimidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (29.5 mg, 30% yield) as a brown oil. MS: m / z 421.1 [M+H]+; RT 0.87 min (Method 3). 1H NMR (600 MHz, DMSO-d6 ) 5 ppm 2.20 - 2.27 (m, 1 H) 2.44 - 2.49 (m, 3 H) 2.83 - 2.97 (m, 6 H) 3.47 - 3.53 (m, 2 H) 3.63 - 3.69 (m, 1 H) 3.75 - 3.81 (m, 1 H) 3.97 - 4.06 (m, 2 H) 6.75 - 6.84 (m, 1 H) 7.89 - 8.02 (m, 1 H) 8.14 - 8.24 (m, 2 H) 9.50 - 9.57 (m, 1 H) 9.94 - 10.11 (m, 1 H) 10.77 - 10.86 (m, 1 H).

[0483] Using the procedure described for Example 2 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0484]

[0485] Example 3 - Compound 3 6-Chloro-N-(2,8-dimethylimidazo[l,2-a]pyrazin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (22.90 mg, 56.95 pmol, 1.0 eq.) was dissolved in dioxane (1.17 mL, 0.05 M) before 1- methylpiperazine (14.26 mg, 142.3 pmol, 2.5 eq.), potassium tert-butoxide (25.56 mg, 227.8 pmol), and DIPEA (85.4 pmol, 15 pL) were added. The solution was at 120 °C for 72 hours before it was concentrated then taken back up in DMSO, filtered, and purified via reversed phase HPLC purification (Column: Sunfire C18 100 x 19 mm, 5 mm; Mobile phase A: MeCN; Mobile phase B: H2O; Modifier: 0.1% TFA) to obtain N-(2,8-dimethylimidazo[l,2-a]pyrazin- 6-yl)-6-(4-methylpiperazin-l-yl)thieno[2,3-b]pyridine-2-carboxamide (10.4 mg, 34% yield) as an orange oil. MS: m / z 422.2 [M+H]+; RT 0.88 min (Method 3). 'H NMR (400 MHz, DMSO- d6) 6 ppm 2.36 - 2.42 (m, 3 H) 2.42 - 2.46 (m, 3 H) 2.52 - 2.57 (m, 2 H) 2.71 - 2.78 (m, 3 H)

[0486] 2.83 - 2.88 (m, 2 H) 3.13 - 3.20 (m, 3 H) 3.53 - 3.58 (m, 2 H) 4.53 - 4.60 (m, 2 H) 7.14 - 7.18 (m, 1 H) 7.95 - 8.00 (m, 1 H) 8.12 - 8.16 (m, 1 H) 8.38 - 8.41 (m, 1 H) 9.10 - 9.13 (m, 1 H) 9.82 - 9.90 (m, 1 H) 10.99 - 11.04 (m, 1 H). Using the procedure described for Example 3 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0487] Example 4 - Compound 6

[0488] N,N-Dimethylpyrrolidin-3 -amine (26.68 mg, 142.59 pmol, 2Hydrochloride, 2.0 eq.) and 6- chloro-N-(2-methylimidazo[ 1 ,2-a]pyrazin-6-yl)thieno[2,3 -b]pyridine-2-carboxamide (25.8 mg, 71.29 pmol, 1.0 eq.) were dissolved in dioxane (356 pL, 0.2 M) before DIPEA (178.2 pmol, 31 pL, 2.5 eq.) was added. The solution was then raised to 120 °C for 72 hours before it was concentrated, taken back up in DMSO, filtered, and purified via reversed phase HPLC purification (Column: Sunfire C18 100 x 19 mm, 5 mm; Mobile phase A: MeCN; Mobile phase B: H2O; Modifier: 0.1% TFA) to obtain 6-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-N-(2- methylimidazo[l,2-a]pyrazin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (10.2 mg, 26% yield) as an orange oil. MS: m / z 422.2 [M+H]+; RT 0.82 min (Method 3); 'HNMR (400 MHz, DMSO-de ) 8 ppm 2.38 - 2.44 (m, 3 H) 2.84 - 2.96 (m, 6 H) 3.66 (br d, J=4.50 Hz, 2 H) 3.73 - 3.82 (m, 3 H) 3.98 - 4.07 (m, 2 H) 6.74 - 6.79 (m, 1 H) 8.01 - 8.05 (m, 1 H) 8.07 - 8.12 (m, 1 H) 8.34 - 8.38 (m, 1 H) 8.86 - 8.89 (m, 1 H) 9.25 - 9.28 (m, 1 H) 10.01 - 10.11 (m, 1 H) 11.01 - 11.07 (m, 1 H).

[0489] Example 5 - Compound 66 To a solution 6-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3- b]pyridine-2-carboxamide (15 mg, 41.58 pmol) and (3aS,6aS)-l-methyl-3,3a,4,5,6,6a- hexahydro-2H-pyrrolo[2,3-c]pyrrole (10.49 mg, 83.15 pmol) in Dioxane (2 mL) was added TEA (124.73 pmol, 17 pL). The reaction mixture was stirred at 90 °C for 12 h. It was filtered and concentrated under reduced pressure to give a residue, which was purified by prep-HPLC (HC1 condition) to give 6-[(3aS,6aS)-l-methyl-2,3,3a,4,6,6a-hexahydropyrrolo[3,4-b]pyrrol- 5-yl]-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (5.3 mg, 28% yield) as a yellow solid. MS: m / z 451.0 [M+H]+; RT 1.53 min (Method 7). Using the procedure described for Example 5 above, additional compounds described herein were prepared by substituting the appropriate amine and amide starting materials in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0490] Example 6 - Compound 67 and 68

[0491]

[0492] Step a: To a stirred solution of 6-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyri din-6- yl)thieno[2,3-b]pyridine-2-carboxamide (15 mg, 41.58 pmol) in Dioxane (1 mL) was added TEA (207.88 umol, 29 pL)and tert-butyl N-ethyl-N-[(3S)-pyrrolidin-3-yl]carbamate (8.91 mg, 41.58 pmol). The reaction mixture was stirred at 90 °C for 12 h. The mixture was filtered and concentrated to give a residue which was purified by prep-HPLC (neutral condition) to give tert-butyl N-ethyl-N-[(3S)-l-[2-[(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)carbamoyl]thieno[2,3-b]pyridin-6-yl]pyrrolidin-3-yl]carbamate (15 mg, 54% yield) as a yellow solid. MS: m / z 539.2 [M+H]+; RT 0.71 min (Method 7)

[0493] Step b: To a solution of tert-butyl N-ethyl-N-[(3S)-l-[2-[(8-fluoro-2-methyl-imidazo[l,2- a]pyridin-6-yl)carbamoyl]thieno[2,3-b]pyridin-6-yl]pyrrolidin-3-yl]carbamate (15 mg, 27.85 pmol) in DCM (1 mL) was added 2 M HC1 in EtOAc (1 mL). The reaction mixture was stirred at 20 °C for 2 h. The mixture was filtered and concentrated to give a residue which was purified by prep-HPLC (neutral condition) to give 6-[(3S)-3-(ethylamino)pyrrolidin-l-yl]-N-(8-fluoro- 2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (8 mg, 63% yield) MS: m / z 439.0 [M+H]+; RT 1.53 min (Method 7) as a white solid which was separated by prep-SFC (Column: DAICEL CHIRALCEL OD(250mm*30mm,10um); Mobile Phase: from 40% to 40% of 0.1%NH3H2O MEOH; Flow Rate (ml / min): 150; Column temp: 35°C) to give 6-[(3S)-3-(ethylamino)pyrrolidin-l-yl]-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)thieno[2,3-b]pyridine-2-carboxamide (3.4 mg, 42% yield) MS: m / z 439.1 [M+H]+; RT 1.67 min (Method 7) and 6-[(3R)-3-(ethylamino)pyrrolidin-l-yl]-N-(8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (3.9 mg, 47% yield) both as a white solid. MS: m / z 439.1 [M+H]+; RT 1.50 min (Method 7). Using the procedure described for Example 5 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0494] Example 7 - Compound 10 8-Fluoro-2-m ethyl -imidazo[l,2-a]pyridin-6-amine (14.81 mg, 89.66 pmol, 1.1 eq.) was dissolved in pyridine (407 pL, 0.2 M) before 6-[3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3- b]pyridine-2-carboxylic acid (25 mg, 81.51 pmol, 1.0 eq.) and T3P (155.61 mg, 244.54 pmol, 145.57 pL, 50% purity in ethyl acetate, 3.0 eq.) were added. The solution then stirred at rt for 16 hours before it was concentrated, taken back up in a minimal amount of DMSO, filtered, and purified via reversed phase HPLC purification (column: XSelect CSH Prep Cl 8 5um OBD 19x100mm; Mobile phase A: MeCN; Mobile phase B: H2O, Modifier: 0.1% NH4OH) to obtain 6-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-N-(8-fluoro-2-methyl-imidazo[l,2- a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (26.3 mg, 74% yield) as a brown oil. MS: m / z 439.1 [M+H]+; RT 1.07 min (Method 3). 'H NMR (600 MHz, DMSO-d6) 8 ppm 2.20 - 2.27 (m, 1 H) 2.36 - 2.42 (m, 3 H) 2.86 - 2.91 (m, 6 H) 3.48 (br s, 2 H) 3.66 (br d, J=4.58 Hz, 1 H) 3.75 - 3.78 (m, 1 H) 3.99 - 4.05 (m, 2 H) 6.76 - 6.80 (m, 1 H) 7.47 - 7.55 (m, 1 H) 8.01 -

[0495] 8.15 (m, 2 H) 9.07 - 9.12 (m, 1 H) 9.96 - 10.04 (m, 1 H) 10.53 - 10.59 (m, 1 H).

[0496] Using the procedure described for Example 7 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0497] Example 8 - Compound 54

[0498] 6-[(3S)-3-(Dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylic acid (25 mg,

[0499] 83.81 pmol, 1.0 eq.) was dissolved in pyridine (1 mL, 0.083 M) before 8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-amine (13.84 mg, 83.81 pmol, 1.0 eq.) and T3P (148 pL, 251.42 pmol, 50% purity in ethyl acetate, 3.0 eq.) was added. The solution was then stirred at 50 °C for 4 hours before being concentrated, taken up in a minimal amount of DMSO, filtered, and purified via HPLC purification (column: XSelect CSH Prep C18 5um OBD 19x100mm; Mobile phase A: MeCN; Mobile phase B: H2O, Modifier: 0.1% NH4OH) to obtain 6-[(3S)-3- (dimethylamino)pyrrolidin-l-yl]-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyri din-6- yl)thieno[2,3-b]pyridine-2-carboxamide (11.1 mg, 28% yield) as a yellow solid. MS: m / z 439.2 [M+H]+; RT 0.89 min (Method 3).

[0500] Using the procedure described for Example 8 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0501] Example 9 - Compound 55 6-[(3R)-3-(Dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridine-2-carboxylic acid (25 mg, 85.80 pmol, 1.0 eq.) was dissolved in pyridine (1 mL, 0.09 M) before 8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-amine (14.17 mg, 85.80 pmol, 1.0 eq.) and T3P (163.80 mg, 257.4 pmol, 3.0 eq., 50% purity in ethyl acetate) were added. The solution was stirred at 50 °C for 4 hours before being concentrated, taken up in DMSO, filtered, and purified via HPLC purification (column: XSelect CSH Prep C18 5um OBD 19x100mm; Mobile phase A: MeCN; Mobile phase B: H2O, Modifier: 0.1% NH4OH) to obtain 6-[(3R)-3- (dimethylamino)pyrrolidin-l-yl]-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyri din-6- yl)thieno[2,3-b]pyridine-2-carboxamide (7.3 mg, 19% yield). MS: m / z 439.2 [M+H]+; RT 0.90 min (Method 3). 'HNMR (600 MHz, DMSO-d6) 8 ppm 1.81 - 1.90 (m, 1 H) 2.17 - 2.21 (m, 1 H) 2.23 - 2.30 (m, 6 H) 2.33 - 2.38 (m, 3 H) 2.82 - 2.91 (m, 1 H) 3.19 - 3.26 (m, 1 H) 3.40 - 3.47 (m, 1 H) 3.65 - 3.73 (m, 1 H) 3.75 - 3.82 (m, 1 H) 6.67 - 6.72 (m, 1 H) 7.27 - 7.34 (m, 1 H) 7.88 - 7.93 (m, 1 H) 8.03 - 8.10 (m, 2 H) 8.98 - 9.02 (m, 1 H) 10.35 - 10.40 (m, 1 H).

[0502] Using the procedure described for Example 9 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0503] Example 10 - Compound 8 Step a: To a vial with 8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-amine (50.16 mg, 303.68 pmol) and 5-chlorofuro[3,2-b]pyridine-2-carboxylic acid (50 mg, 253.07 pmol) was added 2,4,6-tripropyl-l,3,5,2,4,6trioxatriphosphinane 2,4,6-trioxide (483.13 mg, 759.20 pmol, 451.94 pL, 50% purity), N-ethyl-N-isopropyl-propan-2-amine (98.12 mg, 759.20 pmol, 132.24 pL) and dioxane (2 mL) . The reaction mixture was stirred at 60 °C overnight. The mixture was concentrated under vacuum. The residue was purified by column chromatography (0% to 20% MeOH / DCM) to give 5-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)furo[3,2- b]pyridine-2-carboxamide (58.6 mg, 67% yield) as a pale-yellow solid. MS: m / z 345.0 [M+H]+; RT 0.52 min (Method 4)

[0504] Step b: A microwave vial with 5-chloro-A-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)furo[3,2-b]pyridine-2-carboxamide (25 mg, 64.54 pmol), diacetoxypalladium (1.45 mg, 6.45 pmol), [ 1 -(2-diphenylphosphanyl- 1 -naphthyl)-2 -naphthyl] -diphenyl -phosphane (8.04 mg, 12.91 pmol), sodium tert-butoxide (18.61 mg, 193.63 pmol) was evacuated under vacuum and refilled with N2 three times. Tetrahydrofuran (1 mL) and (3S)-N,N-dimethylpyrrolidin-3- amine (44.22 mg, 387.26 pmol) was then added under N2 atmosphere. The reaction mixture was stirred at 90 °C for 12 h. The mixture was concentrated under vacuum and purified by HPLC (Column: Sunfire C18 100 x 19 mm, 5 mm; Mobile phase A: MeCN; Mobile phase B: H2O; Modifier: 0.1% TFA) to obtain 5-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]-N-(8-fluoro- 2-methyl-imidazo[l,2-a]pyridin-6-yl)furo[3,2-b]pyridine-2-carboxamide (19.5 mg, 71% yield). MS: m / z 423.1 [M+H]+; RT 0.73 min (Method 3).

[0505] Using the procedure described for Example 10 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0506] Example 11 - Compound 9

[0507]

[0508] Step a: N,N-Dimethylpyrrolidin-3-amine (57.83 mg, 309.05 pmol, 2Hydrochloride, 3.0 eq.), ethyl 5-chlorothiazolo[5,4-b]pyridine-2-carboxylate (25 mg, 103.02 pmol, 1.0 eq.), and DIPEA (13.31 mg, 103.02 pmol, 1.0 eq.) were dissolved in Dioxane (515.08 pL, 0.2 M) which was heated to 80 °C for 16 hours before being injected crude onto normal phase and purified via 0- 25% MeOELDCM over 3.5 minutes. Product elutes at 22% MeOH. Identified fractions were collected, combined, and concentrated to yield ethyl 5-[3-(dimethylamino)pyrrolidin-l- yl]thiazolo[5,4-b]pyridine-2-carboxylate as a wet beige solid that was carried forward as is (assumed 100% yield). MS: m / z 321.1 [M+H]+; RT 0.49 min (Method 4)

[0509] Step b: Ethyl 5-[3-(dimethylamino)pyrrolidin-l-yl]thiazolo[5,4-b]pyridine-2-carboxylate (121.31 mg, 318.03 pmol, 1.0 eq.) was dissolved in Dioxane (795.08 pL, 0.2 M) and water (795.08 pL, 0.2 M) before lithium hydroxide (7.62 mg, 318.03 pmol, 1.0 eq.) was added. The solution was then heated to 80 °C and stirred for 16 hours before it was concentrated and carried forward crude as 5-[3-(dimethylamino)pyrrolidin-l-yl]thiazolo[5,4-b]pyridine-2-carboxylic acid (50.8 mg, 52% yield) as a yellow white solid. MS: m / z 293.0 [M+H]+; RT 0.35 min (Method 4)

[0510] Step c: 5-[3-(Dimethylamino)pyrrolidin-l-yl]thiazolo[5,4-b]pyridine-2-carboxylic acid (50.80 mg, 165.07 pmol, 1.0 eq.) was dissolved in acetonitrile (695.04 pL, 0.24 M) before 2- methylimidazo[l,2-a]pyridin-6-amine (24.29 mg, 165.07 pmol, 1.0 eq.), HATU (69.04 mg, 181.58 pmol, 1.1 eq.), and DIPEA (46.93 mg, 363.16 pmol, 2.2 eq.) were added. The solution was then stirred at rt for 3 hours before it was concentrated and taken up in a minimal amount of DMSO, filtered, and purified via reversed phase HPLC purification (Column: Sunfire C18 100 x 19 mm, 5 mm; Mobile phase A: MeCN; Mobile phase B: H2O; Modifier: 0.1% TFA) to obtain 5-[3-(dimethylamino)pyrrolidin-l-yl]-N-(2-methylimidazo[l,2-a]pyridin-6- yl)thiazolo[5,4-b]pyridine-2-carboxamide (11.7 mg, 13% yield) as a brown solid. MS: m / z 422.2 [M+H]+; RT 0.87 min (Method 3) Example 12 - Compound 84

[0511] Step a: To a solution of 6-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3- b]pyridine-2-carboxamide (41 mg, 113.64 pmol) in Dioxane (5 mL) and water (1 mL) was added Pd(dppf)C12 (8.32 mg, 11.36 pmol), K2CO3 (31.41 mg, 227.28 pmol) and tert-butyl 5-

[0512] (4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-l-carboxylate (35.14 mg, 113.64 pmol). The reaction mixture was stirred at 90 °C for 12 h under N2. The mixture was filtered and concentrated to give a residue. The residue was purified by flash silica gel chromatography (from PE / EtOAc = 10 / 1 to 5 / 1) to yield tert-butyl 5-[2-[(8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-yl)carbamoyl]thieno[2,3-b]pyridin-6-yl]-3,6-dihydro-2H-pyridine-l- carboxylate (30 mg, 50% yield). MS: m / z 508.0 [M+H]+; RT 0.43 min (Method 7)

[0513] Step b: To a stirred solution of tert-butyl 5-[2-[(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)carbamoyl]thieno[2,3-b]pyridin-6-yl]-3,6-dihydro-2H-pyridine-l-carboxylate (10 mg, 19.70 pmol) in DCM (1 mL) was added 4 M HC1 in EtOAc (2 mL).The reaction mixture was stirred at 20°C for 2 h. The mixture was filtered and concentrated to give a residue which was purified by prep-HPLC (neutral condition) to afford N-(8-fluoro-2-methyl-imidazo[l,2- a]pyridin-6-yl)-6-(l,2,3,6-tetrahydropyridin-5-yl)thieno[2,3-b]pyridine-2-carboxamide (2.3 mg, 27% yield) as a yellow solid. MS: m / z 407.8 [M+H]+; RT 0.25 min (Method 7); 1H NMR (400 MHz, METHANOL-d4) 5 = 9.44 (s, 1H), 8.35 (d, J = 8.4 Hz, 1H), 8.24 (s, 1H), 8.12 (s, 1H), 8.01 (d, J = 12.8 Hz, 1H), 7.89 (d, J = 8.4 Hz, 1H), 7.08-7.06 (m, 1H), 4.35 (d, J = 1.6 Hz, 2H), 3.45-3.42 (m, 2H), 2.72-3.71 (m, 2H), 2.58 (s, 3H). Using the procedure described for Example 12 above, additional compounds described herein were prepared by substituting the appropriate boronic ester starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0514] Example 13 - Compound 81 and 82

[0515] Step a: To a solution of tert-butyl 5-[2-[(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)carbamoyl]thieno[2,3-b]pyridin-6-yl]-3,4-dihydro-2H-pyridine-l-carboxylate (32 mg, 63.04 umol) in MeOH (10 mL) was added Pd / C (6.71 mg, 63.04 umol) under N2. The mixture was stirred at 25 °C under 50 psi of H2 for 12 hours. The reaction mixture was filtered and concentrated under reduced pressure to give the tert-butyl 3-[2-[(8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-yl)carbamoyl]thieno[2,3-b]pyridin-6-yl]piperidine-l-carboxylate (9 mg, 27% yield) as a white solid MS: m / z 510.2 [M+H]+; RT 0.42 min (Method 7) which was purified further by prep-SFC (Column: Chiralpak AD-3 50^4.6mm I.D., 3um, Mobile phase: Phase A for CO2, and Phase B for IPA (0.05%DEA); Isocratic elution: 40% B in A Flow rate: 3 mL / min; Detector: PDA; Column Temp: 35 °C; Back Pressure: 100 Bar) to obtain tert-butyl (3R)-3-[2-[(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)carbamoyl]thieno[2,3-b]pyridin-6- yl]piperidine-l -carboxylate and tert-butyl (3S)-3-[2-[(8-fluoro-2-methyl-imidazo[l,2- a]pyridin-6-yl)carbamoyl]thieno[2,3-b]pyridin-6-yl]piperidine-l-carboxylate.

[0516] Step b: In separate vials, tert-butyl (3R)-3-[2-[(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)carbamoyl]thieno[2,3-b]pyridin-6-yl]piperidine-l -carboxylate (10.00 mg, 19.62 umol) and tert-butyl (3S)-3-[2-[(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)carbamoyl]thieno[2,3- b]pyridin-6-yl]piperidine-l -carboxylate (10.00 mg, 19.62 umol) were dissolved in DCM (1 mL) and then treated with 2 M HC1 in EtOAc. After stirring for 2 h at rt, the mixture was filtered and concentrated to give a residue which was purified by prep-HPLC (neutral condition) to give N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-6-[(3R)-3- piperidyl]thieno[2,3-b]pyridine-2-carboxamide (1.6 mg, 19% yield) MS: m / z 410.0 [M+H]+; RT 0.26 min (Method 7); 'HNMR (400 MHz, METHANOL-d4) 8 = 9.41 (s, 1H), 8.37 (d, J = 8.4 Hz, 1H), 8.24 (s, 1H), 8.09 (s, 1H), 7.94 (d, J = 12.0 Hz, 1H), 7.52 (d, J = 8.4 Hz, 1H), 3.62 - 3.48 (m, 4H), 3.21 - 3.14 (m, 1H), 2.57 (s, 3H), 2.26 - 2.22 (m, 1H), 2.03 - 1.99 (m, 1H), 1.98

[0517] 1.92 (m, 2H) and N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-6-[(3S)-3- piperidyl]thieno[2,3-b]pyridine-2-carboxamide (3.8 mg, 45% yield) both as a yellow solid. MS: m / z 410.0 [M+H]+; RT 0.25 min (Method 7); 1H NMR (400 MHz, METHANOL-d4) 6 = 9.38 (s, 1H), 8.37 (d, J = 8.0Hz, 1H), 8.23 (s, 1H), 8.07 (s, 1H), 7.90 (d, J = 11.6Hz, 1H), 7.52 (d, J = 8.4 Hz, 1H), 3.61- 3.19, (m, 4H), 3.19-3.13(m, 1H), 2.56(s, 3H), 2.26-2.20 (m, 1H), 2.00-1.92(m, 3H).

[0518] Using the procedure described for Example 5 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0519] Step a: 6-Bromofuro[3,2-b]pyridine-2-carboxylic acid (200 mg, 826.36 pmol) was dissolved in ethanol (10 mL) before HC1 in dioxane (4 M, 619.77 pL) was added. The solution then stirred at 80°C for 16 hours, before being concentrated to obtain ethyl 6-chlorothieno[2,3- b]pyridine-2-carboxylate (ethyl 6-bromofuro[3,2-b]pyridine-2-carboxylate (244 mg) as an off- white powder that was carried forward crude. MS: m / z 271.9 [M+H]+.

[0520] A microwave vial with ethyl 6-bromofuro[3,2-b]pyridine-2-carboxylate (55.80 mg, 183.86 pmol), cesium carbonate (179.72 mg, 551.59 pmol), (5-diphenylphosphanyl-9,9-dimethyl- xanthen-4-yl)-diphenyl-phosphane (21.28 mg, 36.77 pmol) and tris(dibenzylideneacetone)dipalladium (16.84 mg, 18.39 pmol) was evacuated under vacuum and refilled with N2 three times. Dioxane (1 mL) and N,N-dimethylpyrrolidin-3 -amine (41.99 mg, 367.73 pmol) were then added under N2 atmosphere. The reaction mixture was stirred at 90 °C for 12 h. The mixture was concentrated under vacuum and purified by flash silica gel chromatography (MeOH / CFhCh / = 0 to 10 / 1) to obtain ethyl 6-[3-(dimethylamino)pyrrolidin- l-yl]furo[3,2-b]pyridine-2-carboxylate (28.4 mg, 51% yield). MS: m / z 304.1 [M+H]+.

[0521] Step b: Ethyl 6-[3-(dimethylamino)pyrrolidin-l-yl]furo[3,2-b]pyridine-2-carboxylate (28.42 mg, 83.37 pmol) was dissolved in dioxane (0.5 mL) and water (0.5 mL) before lithium hydroxide (2.99 mg, 125.06 pmol, 1.5 eq.) was added. The solution was then heated at 50 °C for 2 hours before it was concentrated to obtain 6-[3-(dimethylamino)pyrrolidin-l-yl]furo[3,2- b]pyridine-2-carboxylic acid (22.9 mg) as an off-white powder. MS: RT m / z 276.0 [M+H]+. Step c: 8-Fluoro-2-methyl-imidazo[l,2-a]pyridin-6-amine (27.52 mg, 166.60 pmol), 6-[3- (dimethylamino)pyrrolidin-l-yl]furo[3,2-b]pyridine-2-carboxylic acid (22.93 mg, 83.3 pmol), 3-(ethyliminomethyleneamino)-N, N-dimethyl -propan- 1 -amine hydrochloride salt (31.94 mg, 166.60 pmol) and 1 -hydroxybenzotri azole hydrate (25.51 mg, 166.60 pmol) were added in a vial. DMF (1 mL) and N-ethyl-N-isopropyl-propan-2-amine (43.06 mg, 333.20 pmol, 58.04 pL) were then added. The reaction mixture was stirred at room temperature overnight at 40 °C overnight before being concentrated, taken up in DMSO, filtered, and purified via HPLC purification (Column: Sunfire C18 100 x 19 mm, 5 mm; Mobile phase A: MeCN; Mobile phase B: H2O; Modifier: 0.1% TFA) to obtain 6-[3-(dimethylamino)pyrrolidin-l-yl]-N-(8-fluoro-2- methyl-imidazo[l,2-a]pyridin-6-yl)furo[3,2-b]pyridine-2-carboxamide (2.6 mg, 6.15 pmol, 7.39% yield). MS: m / z 423.1 [M+H]+; RT 0.79 min (Method 3). *HNMR (600 MHz, DMSO- d6) 8 ppm 1.87 (m, 1 H) 2.17 - 2.22 (m, 1 H) 2.24 (s, 7 H) 2.35 (s, 3 H) 2.84 - 2.89 (m, 1 H) 3.18 (t, J = 8.77 Hz, l H) 3.52 (t, J=8.39 Hz, 1 H) 3.59 (m, 1 H) 7.09 (d, J = 1.53 Hz, 1 H) 7.37 (d, J = 12.59 Hz, 1 H) 7.76 (s, 1 H) 7.93 (d, J = 2.67 Hz, 1 H) 8.17 (d, J = 2.29 Hz, 1 H) 9.08 (d, J = 0.76 Hz, 1 H) 10.50 (s, 1 H).

[0522] Example 15 - Compound 89

[0523] Step a: (3R)-N,N-dimethylpyrrolidin-3-amine (35.29 mg, 0.309 mmol, 0.75 eq.), ethyl 5- chlorothiazolo[5,4-b]pyridine-2-carboxylate (100 mg, 0.412 mmol, 1.0 eq.), and DIPEA (106.51 mg, 0.824 mmol, 2.0 eq.) were dissolved in Dioxane (1 mL, 0.4 M) before being heated to 80 °C for 16 hours. The solution was then concentrated via biotage VI 0 before being taken back up in a minimal amount of methanol and purified via 0-20% MeOH:DCM over 7 minutes. Product elutes around 10% MeOH. Obtained ethyl 5-[(3R)-3- (dimethylamino)pyrrolidin-l-yl]thiazolo[5,4-b]pyridine-2-carboxylate (47.3 mg, 0.148 mmol, 35.9% yield). MS: m / z 321.0. [M+H]+; RT 0.50 min (Method 4).

[0524] Step b: 8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-amine (17.73 mg, 107.32 umol, 1.2 eq.) and methyl-5-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]thiazolo[5,4-b]pyridine-2- carboxylate (27.4 mg, 89.43 umol, 1.0 eq.) were dissolved in Toluene (447.15 uL, 0.2 M) before LiHMDS (1 M, 178.86 umol, 178.86 uL, 2.0 eq.) was added. The solution then stirred at RT for 16 hours before it was concentrated then taken back up in a minimal amount of DMSO, water, and methanol then filtered and injected directly onto reversed phase under acidic conditions. Identified fractions were collected, combined, and concentrated to yield an orange yellow solid that was registered as is. Obtained 5-[(3R)-3-(dimethylamino)pyrrolidin- l-yl]-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thiazolo[5,4-b]pyridine-2- carboxamide (19.8 mg, 0.035 mmol, 39.2% yield). MS: m / z 440.2. [M+H]+; RT 0.42 min (Method 3). 'H NMR (400 MHz, METHANOL-d4 ) 5 ppm 2.32 - 2.43 (m, 1 H) 2.55 - 2.59 (m, 3 H) 2.62 - 2.67 (m, 1 H) 2.99 - 3.05 (m, 6 H) 3.60 - 3.69 (m, 1 H) 3.79 - 3.86 (m, 1 H) 3.87 - 3.94 (m, 1 H) 4.06 - 4.19 (m, 2 H) 6.87 - 6.93 (m, 1 H) 8.09 - 8.14 (m, 2 H) 8.21 - 8.27 (m, 1 H) 9.44 - 9.48 (m, 1 H).

[0525] Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate amine starting materials in steps a and b, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0526] Example 16 - Compound 140 and 139 Step a: To a mixture of 5-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)thiazolo[5,4-b]pyridine-2-carboxamide (115.85 mg, 320.23 umol, 1.2 eq.) , tert-butyl 2,6- dimethyl-4-(4, 4,5, 5-tetramethyl- 1,3, 2-dioxaborolan-2-yl)-3,6-dihydro-2H-pyri dine- 1- carboxylate (90 mg, 266.86 umol, 1.0 eq.) and K2CO3 (110.64 mg, 800.57 umol, 3.0 eq.) in Dioxane (2 mL, 133 mM) and water (0.4 mL, 133 mM) was added ditert- butyl(cyclopentyl)phosphane;dichloropalladium;iron (17.39 mg, 26.69 umol, 0.1 eq.) at 20 °C. The mixture was stirred at 90 °C for 1 h. The reaction mixture was concentrated to give a crude, which was purified by prep-TLC (DCM: MeOH = 10 / 1) to give tert-butyl 4-[2-[(8-fluoro-2- methyl-imidazo[l,2-a]pyridin-6-yl)carbamoyl]thiazolo[5,4-b]pyridin-5-yl]-2,6-dimethyl-3,6- dihydro-2H-pyridine-l -carboxylate (70 mg, 130.45 umol, 48.88% yield) as a yellow solid. MS: m / z 537.3. [M+H]+; RT 0.95 min (Method 7).

[0527] Step b: To a mixture of tert-butyl-4-[2-[(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)carbamoyl]thiazolo[5,4-b]pyridin-5-yl]-2,6-dimethyl-3,6-dihydro-2H-pyridine-l- carboxylate (60 mg, 111.81 umol, 1.0 eq.) in DCM (2 mL, 56 mM) was added HCl / Dioxane (2 mL, 70 eq.) at 20 °C. The mixture was stirred at 20 °C for 1 h. The reaction mixture was concentrated to give a crude, which was purified by prep-HPLC (Column: Boston Green ODS 150 x 30 mm x 5 um; Condition: water (FA)-ACN, Begin B 3, End B 18, Gradient Time (min) 12, 100%B Hold Time (min) 2, Flow Rate (mL / min) 25, Injections 12.) to give 5-[(2S,6R)-2,6- dimethyl-l,2,3,6-tetrahydropyridin-4-yl]-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)thiazolo[5,4-b]pyridine-2-carboxamide (25.5 mg, 58.42 umol, 52.25% yield) as a white solid. MS: m / z 437.1. [M+H]+; RT 1.65 min (Method 8).

[0528] Step c: To a mixture of 5-[(2S,6R)-2,6-dimethyl-l,2,3,6-tetrahydropyridin-4-yl]-N-(8-fluoro- 2-methyl-imidazo[l,2-a]pyridin-6-yl)thiazolo[5,4-b]pyridine-2-carboxamide (25 mg, 57.27 umol, 1.0 eq.) in MeOH (20 mL, 2.86 mM) was added Pd / C (60.95 mg, 57.27 umol, 10% purity, 1.0 eq.) at 20 °C. The mixture was stirred at 20 °C under H2 (15 psi) for 16 hrs. The reaction mixture was filtered and concentrated to give a crude, which was purified by prep- HPLC (Column: Boston Green ODS 150 x 30 mm x 5 um; Condition: water (HCl)-ACN, Begin B 10, End B 40, Gradient Time (min) 10, 100%B Hold Time (min) 2, Flow Rate (mL / min) 25, Injections 1.) to give 5-[(2S,6R)-2,6-dimethyl-4-piperidyl]-N-(8-fluoro-2-methyl-imidazo[l,2- a]pyridin-6-yl)thiazolo[5,4-b]pyridine-2-carboxamide (2.2 mg, 5.02 umol, 8.76% yield) as a yellow solid. MS: m / z 439.1. [M+H]+; RT 1.63 min (Method 8)

[0529] Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate boronic acid / ester and amide starting materials in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0530] Example 17 - Compound 268

[0531]

[0532] Step a: To a solution of 3-chlorothieno[2,3-b]pyrazine-6-carboxylic acid (50 mg, 233 pmol) in Pyridine (5 mL) was added EDC1 (45 mg, 233 pmol) and 8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-amine (39 mg, 233 pmol). The mixture was stirred at 80°C for 2h. The mixture was concentrated. The crude product was triturated with Ethyl Acetate (3 mL) and water (lOmL) at 25°C for Ih. The crude compound was used into the next step without further purification. Compound 3-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)thieno[2,3-b]pyrazine-6-carboxamide (50 mg, 138 pmol) was obtained as black solid. MS: m / z 362.0 [M+H]+; RT 0.423 min (Method 9)

[0533] Step b: To a solution of tert-butyl (lR,5R)-3,6-diazabicyclo[3.2.0]heptane-3-carboxylate (17 mg, 83 pmol) in Dioxane (2 mL) was added TEA (25 mg, 249 pmol, 35 pL) and 3-chloro-N- (8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyrazine-6-carboxamide (30 mg, 83 pmol). The mixture was stirred at 90°C for 2 hr. The mixture was quenched with water (30 mL) and extracted with Ethyl Acetate (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over ISfeSCh, filtered, and concentrated under vacuum (low temperture) to give the crude. The crude was purified by Prep-HPLC (Column: Boston Prime C18 150*30mm*5um;Condition: water(FA)-ACN, Begin B 2, End B 32; Gradient Time(min): 14; 100% B Hold Time(min): 2; Flow Rate (ml / min): 25) to give tert-butyl (lR,5R)-6-[6-[(8- fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)carbamoyl]thieno[2,3-b]pyrazin-3-yl]-3,6- diazabicyclo[3.2.0]heptane-3-carboxylate (30 mg, 57 pmol, 69 % yield) as yellow solid. MS: m / z 524.2 [M+H]+; RT 1.135 min (Method 10)

[0534] Step c: To a solution of tert-butyl (lR,5R)-6-[6-[(8-fhioro-2-methyl-imidazo[l,2-a]pyridin-6- yl)carbamoyl]thieno[2,3-b]pyrazin-3-yl]-3,6-diazabicyclo[3.2.0]heptane-3-carboxylate (30 mg, 57 pmol) in DCM (2 mL) was added TFA (7 mg, 57 pmol, 5 pL) . The mixture was stirred at 25°C for 0.5 hr. The mixture was quenched with water (30.0 mL) and extracted with Ethyl Acetate (20.0 mL x 3). The combined organic layers were washed with brine (20.0 mL), dried over Na2SO4, filtered and concentrated under vacuum(low temperture) to give 3 - [( 1 S,5R)-3,6- diazabicyclo[3.2.0]heptan-6-yl]-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3- b]pyrazine-6-carboxamide (20 mg, crude) as yellow solid. MS: m / z 424.1 [M+H]+; RT 1.300 min (Method 8)

[0535] Step d: To a solution of 3-[(lS,5R)-3,6-diazabicyclo[3.2.0]heptan-6-yl]-N-(8-fluoro-2- methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyrazine-6-carboxamide (20 mg, 47 pmol) in MeOH (20 mL) was added TEA (14 mg, 142 pmol, 20 pL) and paraformaldehyde (57 mg, 47 pmol, 64 pL). The mixture was stirred at 25°C for 0.5 hr. Then the mixture was added NaCNBEE (8 mg, 118 pmol). The mixture was stirre at 25 °C for 16 hr. The mixture was quenched with water (30.0 mL) and extracted with Ethyl Acetate (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over ISfeSCh, filtered and concentrated under vacuum (low temperture) to give the crude. The crude was purified by Prep-HPLC (Column: Boston Prime C18 150*30mm*5um;Condition: water(FA)-ACN, Begin B 2, End B 32; Gradient Time(min): 14; 100% B Hold Time(min): 2; Flow Rate (ml / min): 25) to giveN- (8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-3-[(lS,5R)-3-methyl-3,6- diazabicyclo[3.2.0]heptan-6-yl]thieno[2,3-b]pyrazine-6-carboxamide (5 mg, 12 pmol) as yellow solid. MS: m / z 438.2 [M+H]+; RT 1.17 min (Method 10)

[0536] Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate amine starting materials in steps a and b, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0537] Example 18 - Compound 147 and 148

[0538]

[0539] Step a: To a solution of 3-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)thieno[2,3-b]pyrazine-6-carboxamide (120 mg, 332 pmol) in Dioxane (2.5 mL) and water (0.5 mL) was added K2CO3 (138 mg, 995 pmol), tert-butyl 4-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-l -carboxylate (103mg, 332 pmol) and PdC12(dppf) (24 mg, 33 pmol). The mixture was stirred at 90°C for 2h under N2. The mixture was filtered and concentrated to give a residue. The residue was purified by column chromatography (SiCL, DCM:MeOH = 20: 1 to 10: 1). Compound tert-butyl 4-[6-[(8- fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)carbamoyl]thieno[2,3-b]pyrazin-3-yl]-3,6- dihydro-2H-pyridine-l -carboxylate (100 mg, 197 pmol) was obtained as yellow solid. MS: m / z 509.4 [M+H]+; RT 0.392 min (Method 9)

[0540] Step b: tert-butyl 4-[6-[(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)carbamoyl]thieno[2,3- b]pyrazin-3-yl]-3,6-dihydro-2H-pyridine-l-carboxylate (20 mg, 39 pmol) was added into MeOH (10 mL) under Argon. The mixture was added Pd / C (20 mg, 188 pmol) under Argon. Then the mixture was stirred at 25°C and 35 Psi for 16 hr under H2. The mixture was quenched with water (30.0 mL) and extracted with Ethyl Acetate (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over Na2SO4, filtered and concentrated under vacuum (low temperture) to give the crude. The crude was purified by chromatography column on silica gel (DCM / MeOH = 10 / 0 to 10 / 1) to give tert-butyl 4-[6- [(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)carbamoyl]thieno[2,3-b]pyrazin-3- yl]piperidine-l-carboxylate (15 mg, 29 pmol) as yellow solid. MS: m / z 511.3 [M+H]+; RT 0.953 min (Method 10).

[0541] Step c: Tert-butyl 4-[6-[(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6- yl)carbamoyl]thieno[2,3-b]pyrazin-3-yl]piperidine-l-carboxylate (15 mg, 29 pmol) was added into HC1ZEA (2 mL). The mixture was stirred at 25°C for 1 hr. The mixture was quenched with water (30 mL) and extracted with Ethyl Acetate (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over Na2SO4, filtered and concentrated under vacuum (low temperture) to give the crude. The crude was purified by Prep- HPLC (Column: Boston Prime C18 150*30mm*5um;Condition: water(FA)-ACN, Begin B 2, End B 32; Gradient Time(min): 14; 100% B Hold Time(min): 2; Flow Rate (ml / min): 25) to give N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-3-(4-piperidyl)thieno[2,3-b]pyrazine- 6-carboxamide (5.4 mg, 13 pmol) as yellow solid. MS: m / z 411.1 [M+H]+; RT 1.570 min (Method 10). Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate boronic acid / ester and amide starting materials in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from: Example 19 - Compound 152

[0542] Step a: (3S)-N,N-dimethylpyrrolidin-3-amine (49.94 mg, 437.3 mmol, 1.0 eq.), methyl 2- chlorothieno[2,3-d]pyrimidine-6-carboxylate (100 mg, 437.3 mmol, 1.0 eq.), and DIPEA (113 mg, 875 mmol, 2.0 eq.) were dissolved in Dioxane (1 m , 0.44 M) before being heated to 80 °C for 16 hours. The solution was then concentrated via biotage VI 0 before being taken back up in a minimal amount of methanol and purified via 0-20% MeOH:DCM over 7 minutes. Product elutes at 10% MeOH. Identified fractions were collected, combined, and concentrated to yield methyl 2-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3-d]pyrimidine-6- carboxylate (111.3 mg, 363 mmol, 83% yield). MS: m / z 307.0. [M+H]+; RT 0.45 min (Method 4)

[0543] Step b: 8-fhioro-2-methyl-imidazo[l,2-a]pyridin-6-amine (16.17 mg, 97.92 umol, 1.2 eq.) and methyl 2-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]thieno[2,3-d]pyrimidine-6-carboxylate (25.00 mg, 81.60 umol, 1.0 eq.) were dissolved in Toluene (407.99 uL, 0.2 M) before LiHMDS (1 M, 163.19 umol, 2.0 eq.) was added. The solution then stirred at RT for 16 hours before it was concentrated then taken back up in DMSO, methanol, and water then filtered and injected directly onto reversed phase column under acidic conditions. Identified fractions were collected and concentrated then registered as is. Obtained 2-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]-N- (8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3-d]pyrimidine-6-carboxamide (22.8 mg, 41.19 umol, 50.48% yield, Trifluoroacetic acid) as an orange yellow solid. 'H NMR (400 MHz, METHANOL-d4 ) 5 ppm 2.30 - 2.40 (m, 1 H) 2.54 - 2.57 (m, 3 H) 2.58 - 2.65 (m, 1 H) 2.99 - 3.02 (m, 6 H) 3.66 - 3.74 (m, 1 H) 3.82 - 3.88 (m, 1 H) 3.96 - 4.04 (m, 1 H) 4.05 - 4.13 (m, 1 H) 4.18 - 4.25 (m, 1 H) 7.94 - 7.99 (m, 1 H) 8.06 - 8.08 (m, 1 H) 8.08 - 8.10 (m, 1 H) 8.91 - 8.94 (m, 1 H) 9.37 - 9.40 (m, 1 H). MS: m / z 440.2. [M+H]+; RT 0.43 min (Method 4).

[0544] Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate amine starting materials in steps a and b, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0545] Example 20 - Compound 153

[0546] Step a: To a DCM (2 mL) solution of 8-fluoro-2-methyl-imidazo[l,2-a]pyridine-6-carboxylic acid (80 mg, 412.03 pmol) and 6-chlorothieno[2,3-b]pyridin-2-amine (91.29 mg, 494.43 pmol) were added oxalyl dichloride (2 M, 824.05 pL) and N,N-diethylethanamine (166.77 mg, 1.65 mmol, 229.71 pL). The reaction mixture was stirred at 60 °C overnight and then concentrated. The residue was purified by column chromatography (0 to 10% MeOH / DCM) to yield N-(6- chlorothieno[2,3-b]pyridin-2-yl)-8-fluoro-2-methyl-imidazo[l,2-a]pyridine-6-carboxamide (66.0 mg, 182.93 pmol, 44.40% yield) as pale solid. MS: m / z 361.1 [M+H]+.

[0547] Step b: N-(6-chlorothieno[2,3-b]pyridin-2-yl)-8-fluoro-2-methyl-imidazo[l,2-a]pyridine-6- carboxamide (25 mg, 69.29 pmol), sodium;2-methylpropan-2-olate (19.98 mg, 207.88 pmol) and [2-(2-aminophenyl)phenyl]-methylsulfonyloxy-palladium;dicyclohexyl-[3,6-dimethoxy- 2-(2,4,6-triisopropylphenyl)phenyl]phosphane (6.28 mg, 6.93 pmol) were added in a microwave vial. The mixture was evacuated under vacuum and refill with N2 three times. 2- Me-THF (1 mL) and (3S)-N,N-dimethylpyrrolidin-3-amine (23.74 mg, 207.88 pmol, 26.67 pL) were then added. The reaction mixture was stirred at 90 °C for 12 h and then concentrated under vacuum. The reside was purified by HPLC (Column: Sunfire C18 100 x 19 mm, 5 mm; Mobile phase A: MeCN; Mobile phase B: H2O; Modifier: 0.1% TFA) to obtain N-[6-[(3S)-3- (dimethylamino)pyrrolidin-l-yl]thieno[2,3-b]pyridin-2-yl]-8-fluoro-2-methyl-imidazo[l,2- a]pyridine-6-carboxamide (3.7 mg, 8.44 pmol, 12.18% yield) as a yellow solid. MS: m / z 361.1 [M+H]+. 'HNMR (600 MHz, DMSO-d ) 5 ppm 2.09 - 2.20 (m, 1 H), 2.35 (s, 3 H), 2.39 (br s, 1 H), 2.55 (s, 1 H), 2.59 - 2.85 (m, 6 H), 3.45 - 3.57 (m, 2 H), 3.76 (br t, J=8.39 Hz, 1 H), 3.94 (br s, 1 H), 6.75 (d, J=8.77 Hz, 1 H), 7.31 (d, J=12.59 Hz, 1 H), 7.91 (d, J=1.91 Hz, 1 H), 8.10 - 8.14 (m, 2 H), 9.00 (s, 1 H), 10.42 (s, 1 H).

[0548] Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate acid starting material in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0549] Example 21 - Compound 156 Step a: tert- Butyl rac-(2S,6R)-4-hydroxy-2,6-dimethyl-piperidine-l -carboxylate (23.83 mg, 103.94 pmol) and 6-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3- b]pyridine-2-carboxamide (25 mg, 69.29 pmol) were dissolved in DMF (1 mL), sodium hydride (9.98 mg, 415.75 pmol) was then added. The solution was then heated to 40 °C for 16 hours. The reaction was concentrated under vacuum. The residue was used directly for next step.

[0550] Step b: To a DCM solution (1 mL) of tert-butyl (2S,6R)-4-((2-((8-fluoro-2- methylimidazo[l,2-a]pyridin-6-yl)carbamoyl)thieno[2,3-b]pyridin-6-yl)oxy)-2,6- dimethylpiperidine-1 -carboxylate was added HC1 (4 M, 1.11 mmol, 277.17 pL). The mixture was stirred for 2 h and then concentrated. The residue was purified by HPLC (Column: Sunfire

[0551] C18 100 x 19 mm, 5 mm; Mobile phase A: MeCN; Mobile phase B: H2O; Modifier: 0.1% TFA) to obtain 6-[[(2SR,6RS)-2,6-dimethyl-4-piperidyl]oxy]-N-(8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (4.8 mg, 10.58 pmol, 15.27% yield) as a yellow solid. MS: m / z 454.2 [M+H]+; RT 1.10 min (Method 3).

[0552] Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate alcohol and amide starting materials in step a, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0553] Example 22 - Compound 163

[0554] Step a: To a mixture of 5-chlorofuro[3,2-b]pyridine-2-carboxylic acid (20 mg, 101.23 pmol) and 8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-amine (16.72 mg, 101.23 pmol) in DMF (2 m ) was added HATU (57.73 mg, 151.84 pmol) and DIPEA (19.62 mg, 151.84 pmol, 26.45 pL) in one portion at 25 °C. The mixture was stirred at 90 °C for 80 min. Then the mixture was cooled to 25 °C and concentrated in reduced pressure. The residue was concentrated in vacuum. The residue was purified by silica gel chromatography (DCM / MeOH =50 / 1 to 20 / 1) to afford 5-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)furo[3,2-b]pyridine-2- carboxamide (21 mg, 60.92 pmol, 60.18% yield) as a brown solid. MS: m / z 345.1 [M+H]+.

[0555] Step b: A mixture of 5-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)furo[3,2- b]pyridine-2-carboxamide (20 mg, 58.02 pmol) , l-methyl-4-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine (12.94 mg, 58.02 pmol) in dioxane (3 mL) was added K2CO3 (24.05 mg, 174.05 pmol) ,Pd(dppf)C12 (42.45 mg, 58.02 pmol) and stirred at 90 °C for 6 h. The reaction mixture was filtered and concentrated to afford crude product. The mixture was further purified by silica gel column chromatography (DCM / MeOH =50 / 1 to 10 / 1) to give N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-5-(l-methyl-3,6-dihydro-2H- pyridin-4-yl)furo[3,2-b]pyridine-2-carboxamide (15.6 mg, 38.48 pmol, 66.32% yield) as a brown solid. MS: m / z 406.2 [M+H]+.

[0556] Step c: To a solution of N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-5-(l-methyl-3,6- dihydro-2H-pyridin-4-yl)furo[3,2-b]pyridine-2-carboxamide (25 mg, 61.66 pmol) in MeOH (5 mL) and THF (5 mL) was added Pd / C (19.69 mg, 18.50 pmol, 10% purity). The suspension was degassed under vacuum and purged with H2 several times. The mixture was heated to 35 °C (45 psi) and stirred for 5 hours. The mixture was filtered and concentrated in vacuum. The residue was purified by preparative HPLC (Column Boston Prime C18 150x30mmx5um; Conditionwater(NH3H2O+NH4HCO3)-ACN; Begin B 44; End B 74; Gradient Time(min) 10; 100%B Hold Time(min) 2; FlowRate(ml / min) 25) to afford N-(8-fluoro-2-methyl- imidazo[l,2-a]pyridin-6-yl)-5-(l-methyl-4-piperidyl)furo[3,2-b]pyridine-2-carboxamide (4.42 mg, 10.85 pmol, 17.59% yield, 100% purity) as a white solid. MS: m / z 408.2 [M+H]+; RT 2.572 min (Method 8).1H NMR (400 MHz, METHANOL-^) 5 ppm = 9.10 (d, J = 1.6 Hz, 1 H), 8.07 (d, J = 9.2 Hz, 1 H), 7.79 - 7.74 (m, 2 H), 7.50 (d, J = 8.8 Hz, 1 H), 7.39-7.36 (m, 1 H), 3.14 (d, J = 10.8 Hz, 2 H), 2.99 - 2.90 (m, 1 H), 2.46 - 2.42 (m, 6 H), 2.40 - 2.31 (m, 2 H), 2.04-2.02 (m, 4 H).

[0557] Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a and boronic acid / ester starting material in step b, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0558] Example 23 - Compound 168

[0559] Step a: To a solution of 5-chlorofuro[3,2-b]pyridine-2-carboxylic acid (100 mg, 506.14 pmol) and HATU (384.90 mg, 1.01 mmol) in DMF (2 mL) was added N-ethyl-N-isopropyl-propan- 2-amine (196.24 mg, 1.52 mmol, 264.48 pL) and 8-methoxy-2-methyl-imidazo[l,2-a]pyridin- 6-amine (89.69 mg, 506.14 pmol) . The mixture was stirred at 25 °C for 16 hr. The mixture then was quenched with water (30.0 mL) and extracted with EA (20.0 mL x 3). The combined organic layers were washed with brine (20.0 mL), dried over ISfeSCL, filtered and concentrated under vacuum (low temperture) to give 5-chloro-N-(8-methoxy-2-methyl-imidazo[l,2- a]pyridin-6-yl)furo[3,2-b]pyridine-2-carboxamide (70 mg, 196.21 pmol, 38.77% yield) as yellow solid. MS: m / z 356.8 [M+H]+.

[0560] Step b: To a solution of 5-chloro-N-(8-methoxy-2-methyl-imidazo[l,2-a]pyridin-6- yl)furo[3,2-b]pyridine-2-carboxamide (60 mg, 168.18 pmol) in THF (15 mL) was added sodium tert-butoxide (48.49 mg, 504.54 pmol), 5-chloro-N-(8-methoxy-2-methyl- imidazo[l,2-a]pyridin-6-yl)furo[3,2-b]pyridine-2-carboxamide (60 mg, 168.18 pmol) and tertbutyl (lS,5S)-3,6-diazabicyclo[3.2.0]heptane-3-carboxylate (50.02 mg, 252.27 pmol). The mixture was stirred at 80 °C for 2h under N2. The mixture was filtered and concentrated. The residue was purified by column chromatography (DCM:MeOH=10: l) to yield tert-butyl (lS,5S)-6-[2-[(8-methoxy-2-methyl-imidazo[l,2-a]pyridin-6-yl)carbamoyl]furo[3,2- b]pyridin-5-yl]-3,6-diazabicyclo[3.2.0]heptane-3-carboxylate (79 mg, 152.34 pmol, 90.58% yield) as yellow oil. MS: m / z 519.3 [M+H]+.

[0561] Step c: To a solution of tert-butyl (lS,5S)-6-[2-[(8-methoxy-2-methyl-imidazo[l,2-a]pyridin- 6-yl)carbamoyl]furo[3,2-b]pyridin-5-yl]-3,6-diazabicyclo[3.2.0]heptane-3-carboxylate (79 mg, 152.34 pmol) in HFIP (3 mL) was added TFA (34.74 mg, 304.69 pmol, 23.33 pL). The mixture was stirred at 25 °C for Ih. The mixture was filtered and concentrated. The crude compound was used into the next step without further purification. MS: m / z 419.3 [M+H]+.

[0562] Step d: To a solution of 5-[(lR,5S)-3,6-diazabicyclo[3.2.0]heptan-6-yl]-N-(8-methoxy-2- methyl-imidazo[l,2-a]pyridin-6-yl)furo[3,2-b]pyridine-2-carboxamide (50 mg, 119.49 pmol) in DCE / EtOH (4 mL) was added TEA (36.27 mg, 358.47 pmol, 49.96 pL) and paraformaldehyde (143.33 mg, 119.49 pmol, 162.88 pL). The mixture was stirred at 25 °C for 10 min. Then added sodium tri acetoxyb oranui de (75.97 mg, 358.47 pmol). The mixture was stirred at 25°C for 2h. The mixture was filtered and concentrated. The residue was purified by HPLC purification (Column Boston Prime C18 150x30mmx5um;

[0563] Conditionwater(NH3H2O+NH4HCO3)-ACN; Begin B 44; End B 74; Gradient Time(min) 10; 100%B Hold Time(min) 2; FlowRate(ml / min) 25) to yield N-(8-methoxy-2-methyl- imidazo[l,2-a]pyridin-6-yl)-5-[(lR,5S)-3-methyl-3,6-diazabicyclo[3.2.0]heptan-6- yl]furo[3,2-b]pyridine-2-carboxamide (6.27 mg, 14.50 pmol, 12.13% yield) was obtained as a yellow solid. MS: m / z 433.1 [M+H]+; RT 0.663 min (Method 10). 'H NMR (400MHz, METHANOL-^) 5 ppm = 8.77 (d, J = 1.2 Hz, IH), 7.81 (d, J = 9.2 Hz, IH), 7.56 (s, IH), 7.48 (s, IH), 6.91 (s, IH), 6.51 (d, J = 9.2 Hz, IH), 4.88 - 4.85 (m, IH), 4.15 - 4.10 (m, IH), 4.02 (s, 3H), 3.86 - 3.83 (m, IH), 3.42 (d, J = 11.2 Hz, IH), 3.26 - 3.20 (m, IH), 3.15 (d, J = 10.4 Hz, IH), 2.46 (s, 3H), 2.38 (s, 3H), 2.28 - 2.23 (m, IH), 2.20 - 2.15 (m, IH).

[0564] Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate amine starting materials in step a and b, suitable reagents and reaction conditions, obtaining compounds such as those selected from: Step a: To a stirred solution of 6-chlorothieno[2,3-b]pyridine-2-carboxylic acid (250 mg, 1.2 mmol) in DMF (10 mL) was added DIPEA (454 mg, 3.51 mmol, 611 pL) and HATU (534 mg, 1.40 mmol) and 8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-amine (193.3 mg, 1.17 mmol). The reaction mixture was stirred at 20°C for 14h. The reaction mixture was washed with EtOAc (20 mL x 3), filtered and concentrated under reduced pressure to give a residue. 6-chloro-N- (8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (270 mg, 739.07 pmol, 63.16% yield) was obtained as a brown solid. MS: m / z 360.8 [M+H]+; RT 0.648 min (Method 9)

[0565] Step b: 6-chloro-N-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)thieno[2,3-b]pyridine-2- carboxamide (50 mg, 138 mmol) was dissolved in dioxane (1 mL) and water (0.3 mL). 2, 2, 6, 6- tetramethyl-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-l,2,3,6-tetrahydropyridine (37 mg, 138 mmol) was added, followed by cesium carbonate (90 mg, 277 mmol) and PdC12(dppf) (8 mg, 14 mmol). The mixture was degassed with N2 and stirred at 90°C for 2h. The resulting was cooled to room temperature and diluted with water, extracted with EtOAc, and concentrated. The crude was purified by acidic SCX column by acidifying with HC1 methanol and releasing with 2N ammonia methanol to afford the title compound (21 mg, 0.045 mmol). MS: m / z 464.1 [M+H]+; RT 0.49 min (Method 4)

[0566] Step c: N-(8-fluoro-2-methylimidazo[ 1 ,2-a]pyridin-6-yl)-6-(2,2,6,6-tetramethyl- 1 ,2,3 ,6- tetrahydropyridin-4-yl)thieno[2,3-b]pyridine-2-carboxamide (21 mg, 45 mmol) was dissolved in MeOH (1 mL), Ammonium formate (28 mg, 0.45 mmol) was added followed by Pd / C (10%) (5 mg, 4.5 pmol). The mixture was stirred at 60°C for 2h, the mixture was then cooled to room temperature and filtered on celite, washed with DCM (3 x 5 mL) and concentrated. The resulting was purified by RPHPLC with a basic modifier and gradient of 20-75% ACN in water to afford the title compound (3.9 mg, 8 pmol) as an orange solid.

[0567] Using the procedure described for Example 15 above, additional compounds described herein were prepared by substituting the appropriate amine starting material in step a and boronic acid / ester starting material in step b, suitable reagents and reaction conditions, obtaining compounds such as those selected from:

[0568] Example 25 - Compound 210

[0569] Step a: To a solution of 6-chloro-N-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)thieno[2,3- b]pyridine-2-carboxamide (2.5 g, 6.93 mmol, 1.0 eq.) in DMF (80 mL, 0.087 M) was added 3,3-dimethoxypyrrolidine (1.82 g, 13.86 mmol, 2.0 eq.), sodium;2-methylpropan-2-olate (2.00 g, 20.79 mmol, 3.0 eq.) and [2-(2-aminophenyl)phenyl]-methylsulfonyloxy- palladium;dicyclohexyl-[2-(2,6-dimethoxyphenyl)phenyl]phosphane (1.08 g, 1.39 mmol, 0.2 eq.). Then the mixture was stirred at 130 °C for 12 h under N2 atmosphere. The residue was poured into water (100 mL) and the aqueous phase was extracted with EtOAc (100 mL x 3). The combined organic phase was washed with water (100 mL x 3), brine (200 mL x 2), dried with anhydrous Na2SO4, filtered and concentrated. The crude material was purified by chromatography (DCM / MeOH = 100 / 1 to 50 / 1, TLC: DCM / MeOH = 10 / 1) to give 6-(3,3- dimethoxypyrrolidin-l-yl)-N-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)thieno[2,3- b]pyridine-2-carboxamide (1.5 g, 3.29 mmol, 47.52% yield) as yellow solid. MS: m / z 456.1 [M+H]+; RT 2.067 min (Method 10)

[0570] Step b: To a solution of 6-(3,3-dimethoxypyrrolidin-l-yl)-N-(8-fluoro-2-methylimidazo[l,2- a]pyridin-6-yl)thieno[2,3-b]pyridine-2-carboxamide (1.3 g, 2.85 mmol, 1.0 eq.) in ACN (13 mL, 13 mL, 0.2 M) was added HC1 (1 M, 2.6 mL, 1.0 eq.). Then the mixture was stirred at 25 °C for 2 h. The mixture was filtered and the filter cake was dried under reduced pressure. The solid was added DMSO (20 mL) and stirred at 100 °C for 1 h. The mixture was cooled to 25 °C and filtered, the filter cake was washed with EtOAc (20 mL X 3) and the filter cake was oncentrated under reduced pressure to give N-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)- 6-(3-oxopyrrolidin-l-yl)thieno[2,3-b]pyridine-2-carboxamide (734 mg, 1.68 mmol, 58.84% yield, 93.67% purity) as yellow solid. MS: m / z 410.1 [M+H]+; RT 2.367 min (Method 10) Step c: To a mixture ofN-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-6-(3-oxopyrrolidin- l-yl)thieno[2,3-b]pyridine-2-carboxamide (20 mg, 48.85 umol, 1.0 eq.) and cyclopropylmethanamine (20.84 mg, 293.09 umol, 6.0 eq.) in MeOH (4 mL, 0.012 M) was added acetic acid (14.67 mg, 244.24 umol, 5.0 eq.) in one portion at 25°C under N2. After half an hour, add sodium; cyanob oranui de (9.21 mg, 146.54 umol, 3.0 eq.). The mixture was stirred at 25°C for 2 hours. The mixture was further purification by pre-HPLC(Column Welch Xtimate C18 150*25mm*5um Condition water(FA)-ACN Begin B 2 End B 22 Gradient Time(min) 12 100%B Hold Time(min) 2 FlowRate(ml / min) 25 ) to give 6-(3-

[0571] ((cy cl opropylmethyl)amino)pyrrolidin-l-yl)-N-(8-fluoro-2-methylimidazo[l,2-a]pyri din-6- yl)thieno[2,3-b]pyridine-2-carboxamide (10 mg, 21.53 umol, 44% yield). MS: m / z 465.3 [M+H]+; RT 0.68 min (Method 7) which was purified further by prep-SFC (Column: Chiralpak IC 50*4.6mm 3um, Mobile phase A: Hexane (0.1% DEA), and Phase B: IPA / MeCN=2: l, Isocratic A / B=40 / 60, flow rat: ImL / min; elution: Column Temp: 35 °C; to obtain rel-(R)-6-(3- ((cy cl opropylmethyl)amino)pyrrolidin-l-yl)-N-(8-fluoro-2-methylimidazo[l,2-a]pyri din-6- yl)thieno[2,3-b]pyridine-2-carboxamide.

[0572] Example 26 - Compound 270

[0573] Preparation of (R)-5-(3-(azetidin-l-yl)pyrrolidin-l-yl)-N-(7-fluoro-2-methyl-2H-indazol-5- yl)thiazolo[5,4-b]pyridine-2-carboxamide.

[0574] To a solution of compound 5-chloro-N-(7-fluoro-2-methyl-2H-indazol-5-yl)thiazolo[5,4- b]pyridine-2-carboxamide (50 mg, 138.21 pmol) in DMF (1.38 mL) was added compound (R)- 3-(azetidin-l-yl)pyrrolidine (73.44 mg, 207.31 pmol, TFA salt) andK^CCE (114.60 mg, 829.23 pmol). The mixture was stirred at 90 °C for 8 h. The mixture was concentrated and purified by prep-HPLC (Column: Waters XSelect CSH prep C18 5um OBD 30x100mm column; Condition: water (NH4HCO3)-ACN; Gradient: 5%-70%) to give (R)-5-(3-(azetidin-l- yl)pyrrolidin-l-yl)-N-(7-fluoro-2-methyl-2H-indazol-5-yl)thiazolo[5,4-b]pyridine-2- carboxamide (23.2 mg, 51.38 pmol, 37.18% yield, 100% purity) as a yellow solid. LCMS: [M+H] = 452.2. ’H NMR (600 MHz, DMSO-d6) 5 = 10.88 (s, 1H), 8.46 (d, J = 3.0 Hz, 1H), 8.17 (d, J = 9.2 Hz, 1H), 8.15 (d, J = 1.0 Hz, 1H), 7.56 (dd, J = 1.5, 13.5 Hz, 1H), 6.78 (d, J = 9.5 Hz, 1H), 4.18 (s, 3H), 3.50 - 3.40 (m, 3H), 3.19 - 3.09 (m, 5H), 3.06 - 2.98 (m, 1H), 1.96 - 1.87 (m, 4H)

[0575] Example 27 - Compound 271

[0576] Preparation of (S)-5-(3-(azetidin-l-yl)pyrrolidin-l-yl)-N-(7-fluoro-2-methyl-2H-indazol-5- yl)thiazolo[5,4-b]pyridine-2-carboxamide.

[0577] To a solution of compound 5-chloro-N-(7-fluoro-2-methyl-2H-indazol-5-yl)thiazolo[5,4- b]pyridine-2-carboxamide (50 mg, 138.21 pmol) in DMF (1.38 mL) was added compound (S)- 3-(azetidin-l-yl)pyrrolidine (73.44 mg, 207.31 pmol, TFA salt) andK^CCh (114.60 mg, 829.23 pmol). The mixture was stirred at 90 °C for 8 h. The mixture was concentrated and purified by prep-HPLC (Column: Waters XSelect CSH prep C18 5um OBD 30x100mm column; Condition: water (NH4HCO3)-ACN; Gradient: 5%-70%) to give (S)-5-(3-(azetidin-l- yl)pyrrolidin-l-yl)-N-(7-fluoro-2-methyl-2H-indazol-5-yl)thiazolo[5,4-b]pyridine-2- carboxamide (21.2 mg, 47.3 pmol, 35.18% yield, 100% purity) as a yellow solid. LCMS: [M+H] = 452.2. ’H NMR (600 MHz, DMSO-d6) 5 = 10.88 (s, 1H), 8.46 (d, J = 3.0 Hz, 1H), 8.17 (d, J = 9.2 Hz, 1H), 8.15 (d, J = 1.0 Hz, 1H), 7.56 (dd, J = 1.5, 13.5 Hz, 1H), 6.78 (d, J = 9.5 Hz, 1H), 4.18 (s, 3H), 3.50 - 3.40 (m, 3H), 3.19 - 3.09 (m, 5H), 3.06 - 2.98 (m, 1H), 1.96 - 1.87 (m, 4H)

[0578] Example 28 - Compound 272

[0579] Preparation of N-(6-methoxy-2-methyl-2H-indazol-5-yl)-5-(6-methyl-2, 6- diazaspiro[3.3]heptan-2-yl)thiazolo[5,4-b]pyridine-2-carboxamide.

[0580]

[0581] To a degassed mixture of compound 5-chloro-N-(6-methoxy-2-methyl-2H-indazol-5- yl)thiazolo[5,4-b]pyridine-2-carboxamide (400 mg, 1.07 mmol), compound 2 (266.38 mg, 1.18 mmol) and CS2CO3 (1.05 g, 3.21 mmol) in Dioxane (10 mL) was added Pd- PEPPSI(TM)- IPentcatalyst (84.93 mg, 107.00 pmol) and the mixture was stirred at 90 °C for 16 hours under nitrogen protection. LCMS showed that the desired compound mass was detected. The mixture was concentrated in vacuum and purified by column chromatography (DCM / MeOH = 1 / 0 to 19 / 1) to give compound tert-butyl l-(2-((6-methoxy-2-methyl-2H-indazol-5- yl)carbamoyl)thiazolo[5,4-b]pyridin-5-yl)octahydro-5H-pyrrolo[3,2-c]pyridine-5-carboxylate (430 mg, 71.29% yield) as a colorless oil. ([M+H] = 564.3).

[0582] To a solution of compound tert-butyl l-(2-((6-methoxy-2-methyl-2H-indazol-5- yl)carbamoyl)thiazolo[5,4-b]pyridin-5-yl)octahydro-5H-pyrrolo[3,2-c]pyridine-5-carboxylate (400.0 mg, 709.64 pmol) in DCM (10.0 mL) was added TFA (2.23 g, 19.59 mmol, 1.5 mL) and the solution was stirred at 25 °C for 2 hours. LCMS showed that the desired compound mass was detected. The mixture was concentrated in vacuum to give compound tert-butyl 1- (2-((6-methoxy-2-methyl-2H-indazol-5-yl)carbamoyl)thiazolo[5,4-b]pyridin-5-yl)octahydro- 5H-pyrrolo[3,2-c]pyridine-5-carboxylate (350 mg, crude) as a brown solid. ([M+H] = 464.2).

[0583] To a solution of compound tert-butyl l-(2-((6-methoxy-2-methyl-2H-indazol-5- yl)carbamoyl)thiazolo[5,4-b]pyridin-5-yl)octahydro-5H-pyrrolo[3,2-c]pyridine-5-carboxylate (300.0 mg, 647.17 pmol) and (CH2O)n(232.8 mg, 194.15 pmol, 264.65 pL) in MeOH (10 mL) was stirred at 25 °C for 2 hours. To the mixture was added NaBHsCN (203.3 mg, 3.24 mmol) and the mixture was stirred at 25 °C for 16 hours. LCMS showed that the desired compound mass was detected. The mixture was concentrated in vacuum and purified by column chromatography (DCM / MeOH = 19 / 1 to 9 / 1) to give the residue (290 mg). The residue was re-purified by prep-HPLC (Column: Boston Prime C18 150*30mm*5um; Condition: water(NH3H2O+NH4HCO3)-ACN; Begin B: 50; End B: 70; Gradient Time (min): 10; 100%B Hold Time (min): 2; FlowRate (ml / min): 25) to give N-(6-methoxy-2-methyl-2H-indazol-5- yl)-5-(5-methyloctahydro-lH-pyrrolo[3,2-c]pyridin-l-yl)thiazolo[5,4-b]pyridine-2- carboxamide (75.18 mg, 24.32% yield) as a yellow solid. LCMS ([M+H] = 478.3).1H NMR: (400 MHz, CHLOROFORM-tZ) 5 ppm: 9.86 (s, 1H), 8.77 (s, 1H), 8.04 (d, =8.8 Hz, 1H), 7.81 (s, 1H), 7.04 (s, 1H), 6.62 (d, .7=9,2 Hz, 1H), 4.29-4.40 (m, 1H), 4.16 (s, 3H), 4.04 (s, 3H), 3.63-3.72 (m, 1H), 3.45-3.55 (m, 1H), 3.17-3.27 (m, 1H), 2.63-2.75 (m, 1H), 2.42-2.53 (m, 1H), 2.35 (s, 3H), 2.07-2.24 (m, 3H), 1.88-2.03 (m, 2H), 1.79-1.84 (m, 1H).

[0584] Example 29 - Compound 273

[0585] Preparation of (S)-5-([l,3 '-bipyrrolidinj-l '-yl)-N-(6-methoxy-2-methyl-2H-indazol-5- yl)thiazolo[5,4-b]pyridine-2-carboxamide.

[0586] To a solution of compound 5-chloro-N-(6-methoxy-2-methyl-2H-indazol-5-yl)thiazolo[5,4- b]pyridine-2-carboxamide (100 mg, 267.51 pmol) in Dioxane (2 mL) were added compound 4 (57.02 mg, 267.51 pmol, HC1 salt), Cs2CO3 (261.48 mg, 802.53 pmol) and Pd- PEPPSI(TM)- IPentcatalyst (21.23 mg, 26.75 pmol) under N2. The mixture was stirred at 90 °C for 16 hours under N2. The solution was added MeOH (2 mL) and concentrated in vacuum. The residue was purified by column chromatography (DCM / MeOH = 10 / 1) to give yellow solid. The solid was washed with MeOH (5 mL) and filtered. The filter cake was collected and added 0.02 mL HC1, freeze dry to give (S)-5-([l,3'-bipyrrolidin]-l'-yl)-N-(6-methoxy-2-methyl-2H-indazol-5- yl)thiazolo[5,4-b]pyridine-2-carboxamide (62.78 mg, 45.65% yield, 100% purity, Hydrochloride) as a yellow solid. LCMS: ([M+H] = 478.2). ’H NMR: BIIB- 100499- 1264- P1D1 (400 MHz, DMSO-d6) 5 ppm: 10.72-10.95 (m, 1H), 9.79 (s, 1H), 8.53 (s, 1H), 8.33 (d, J = 9.2 Hz, 1H), 8.27 (s, 1H), 7.15 (s, 1H), 6.92 (d, J = 9.2 Hz, 1H), 4.10 (s, 3H), 3.98-4.07 (m, 5H), 3.72-3.84 (m, 2H), 3.58-3.69 (m, 3H), 3.07-3.21 (m, 2H), 2.35-2.48 (m, 2H), 2.01-2.11 (m, 2H), 1.82-1.97 (m, 2H).

[0587] Example 30 - Compound 274

[0588] Preparation of N-(6-methoxy-2-methyl-2H-indazol-5-yl)-5-((3aS, 7aR)-5-methyloctahydro- lH-pyrrolo[3,2-c]pyridin-l-yl)thiazolo[5,4-b]pyridine-2-carboxamide (compound 274a) and N-(6-methoxy-2-methyl-2H-indazol-5-yl)-5-((3aR,7aS)-5-methyloctahydro-lH-pyrrolo[3,2- c]pyridin-l-yl)thiazolo[5,4-b]pyridine-2-carboxamide (compound 274b)

[0589] N-(6-methoxy-2-methyl-2H-indazol-5-yl)-5-(5-m ethyl octahydro- lH-pyrrolo[3,2-c]pyridin-l- yl)thiazolo[5,4-b]pyridine-2-carboxamide was re-purified by SFC (Column: Cl 8-1 150*30mm*5um; Condition: CO2-EtOH(0.1%NH3H2O); Begin B: 45; End B: 45; FlowRate (ml / min): 80) to give N-(6-methoxy-2-methyl-2H-indazol-5-yl)-5-((3aS,7aR)-5- methyloctahydro-lH-pyrrolo[3,2-c]pyridin-l-yl)thiazolo[5,4-b]pyridine-2-carboxamide (25.67 mg, 5.02% yield, 100.00% purity) as a yellow solid LCMS ([M+H] = 478.2) ’H NMR: (400 MHz, METHANOL-^) 8 ppm: 8.61 (s, 1H), 8.04-8.14 (m, 2H), 7.04 (s, 1H), 6.74 (d, J=9.2 Hz, 1H), 4.29-4.44 (m, 1H), 4.14 (s, 3H), 4.07 (s, 3H), 3.58-3.67 (m, 1H), 3.43-3.50 (m, 1H), 3.27 (br d, .7=2,62 Hz, 1 H), 2.71-2.79 (m, 1 H), 2.43-2.50 (m, 1H), 2.38 (s, 3H), 2.29- 2.37 (m, 1H), 2.17-2.26 (m, 1H), 2.06-2.16 (m, 2H), 1.95-2.03 (m, 1H), 1.81-1.88 (m, 1H) and N-(6-methoxy-2-methyl-2H-indazol-5-yl)-5-((3aR,7aS)-5-methyloctahydro-lH-pyrrolo[3,2- c]pyridin-l-yl)thiazolo[5,4-b]pyridine-2-carboxamide (24.72 mg, 4.84% yield, 100.00% purity) as a yellow solid. LCMS ([M+H] = 478.2). ’H NMR: (400 MHz, METHANOL-^) 6 ppm: 8.61 (s, 1H), 8.04-8.14 (m, 2H), 7.04 (s, 1H), 6.74 (d, J=9.2 Hz, 1H), 4.29-4.44 (m, 1H), 4.14 (s, 3H), 4.07 (s, 3H), 3.58-3.67 (m, 1H), 3.43-3.50 (m, 1H), 3.27 (br d, .7=2,62 Hz, 1 H), 2.71-2.79 (m, 1 H), 2.43-2.50 (m, 1H), 2.38 (s, 3H), 2.29-2.37 (m, 1H), 2.17-2.26 (m, 1H),

[0590] 2.06-2.16 (m, 2H), 1.95-2.03 (m, 1H), 1.81-1.88 (m, 1H)

[0591] Example 31 - Compound 275

[0592] Preparation of (S)-5-(3-(azetidin-l-yl)pyrrolidin-l-yl)-N-(8-methoxy-2-methylinudazo[l,2- a]pyrazin-6-yl)thiazolo[5,4-b]pyridine-2-carboxamide

[0593] To a solution of compound 5-chloro-N-(8-methoxy-2-methylimidazo[l,2-a]pyrazin-6- yl)thiazolo[5,4-b]pyridine-2-carboxamide (20 mg, 53.36 pmol, 1.0 eq.) and compound (S)-3- (azetidin-l-yl)pyrrolidine (13.47 mg, 106.72 pmol, 2.0 eq.) in DMSO (2 mL) was added TEA (16.20 mg, 160.08 pmol, 3.0 eq.). Then the mixture was stirred at 90°C for 12 h. LCMS showed material was consumed and one main peak was detected. The mixture was filtered and concentrated to give a residue. The residue was purified by prep-HPLC purification (Column: YMC-Actus Triart C18 150 * 30 mm * 5 urn, Condition: Water (NH3H2O-NH4HCO3)-MeCN; Begin B: 40; End B: 70; Gradient Time (min): 8 100 % B Hold Time (min): 3; Flow Rate (mL / min): 30) to give (S)-5-(3-(azetidin-l-yl)pyrrolidin-l-yl)-N-(8-methoxy-2- methylimidazo[l,2-a]pyrazin-6-yl)thiazolo[5,4-b]pyridine-2-carboxamide (4.21 mg, 9.06 pmol, 16.98% yield, 100% purity) as a yellow solid. LCMS (M+H: 465.2), ‘H NMR: 'HNMR (400 MHz, METHANOL-^) 8 ppm = 8.87 (s, 1H), 8.15 (d, J= 92 Hz, 1H), 7.74 (s, 1H), 6.78 (d, J= 8.8 Hz, 1H), 4.18 (s, 3H), 3.64-3.55 (m, 3H), 3.48-3.46(m, 1H), 3.38-3.34 (m, 4H), 3.24- 3.21 (m, 1H), 2.42 (s, 3H), 2.17-2.09 (m, 3H), 1.99-1.92 (m, 1H).

[0594] Example 32 - Compound 276

[0595] Preparation of N-(7-fluoro-6-methoxy-2-methyl-2H-indazol-5-yl)-5-(6-methyl-2, 6- diazaspiro[3.4]octan-2-yl)thiazolo[5,4-b]pyridine-2-carboxanude

[0596]

[0597] To a mixture of ethyl 5-chlorothiazolo[5,4-b]pyridine-2-carboxylate (11.5 g, 47.39 mmol) and compound 6-methyl-2,6-diazaspiro[3.4]octane 2,2,2-trifluoroacetate (18.36 g, 52.13 mmol, TFA) in DMF (200 mL) was added TEA (23.98 g, 236.94 mmol, 33.02 mL) at 25 °C. The mixture was stirred at 25°C under N2 atmosphere for 12 h. The mixture was concentrated and The residue was purified by preparative HPLC (Column:C18 150x40mm; Condition: water ( NH4HCO3)-ACN; Begin B: 25%, END B: 55%;Gradient Time(min) 10 mins) followed by lyophilization to yield compound ethyl 5-(6-methyl-2,6-diazaspiro[3.4]octan-2- yl)thiazolo[5,4-b]pyridine-2-carboxylate (3.3 g, 8.14 mmol, 17.18% yield, 82% purity) as a yellow solid and e compound 4 (4 g, 4.81 mmol, 10.16% yield, 40% purity) as a yellow solid. LCMS: (MS (ESI) 333.2 [M + H]+). 1H NMR: (400 MHz, DMSO-d6) 5: 8.26 (d, J = 9.0 Hz, 1H), 6.71 (d, J = 9.0 Hz, 1H), 4.41 (q, J = 7.2 Hz, 2H), 3.54-3.48 (m, 4H), 2.80 (s, 3H), 2.78 (s, 2H), 2.37-2.34 (m, 4H), 1.35 (t, J = 7.2 Hz, 3H).

[0598] To a solution of compound ethyl 5-(6-methyl-2,6-diazaspiro[3.4]octan-2-yl)thiazolo[5,4- b]pyridine-2-carboxylate (0.1 g, 300.82 pmol) in water (2 mL) and MeOH (6 mL) at 20 °C was added NaOH (36.10 mg, 902.47 pmol), the reaction mixture was stirred at 20 °C for 0.5 h under N2 atmosphere. The mixture was concentrated to remove MeOH and the mixture was adjusted pH to 3~4 with 4 N HC1 and concentrated to give 5-(6-methyl-2,6-diazaspiro[3.4]octan-2- yl)thiazolo[5,4-b]pyridine-2-carboxylic acid (90 mg, 91.41% yield, 93% purity) as a paleyellow solid.

[0599] To a solution of compound 5-(6-methyl-2,6-diazaspiro[3.4]octan-2-yl)thiazolo[5,4-b]pyridine- 2-carboxylic acid (40 mg, 204.93 pmol) in Pyridine (1.5 mL) was added compound 7-fluoro- 6-methoxy-2-methyl-indazol-5-amine (62.37 mg, 204.93 mol) and T4P (1.5 mL, 50 % purity in EtOAc) at 25 °C for 3 h. LCMS showed desired compound mass was detected. The mixture reaction was extracted with DCM (50 mL). The combined organic layer was dried over Na2SO4, filtered. The filtrate was concentrated to give a residue, which was purified by prep- HPLC (Column: Boston Prime C18 150*30mm*5um; Condition: water

[0600] (NH3H2O+NH4HCO3)-ACN; 52%-82%; Flow Rate (mL / min): 25) to afford N-(7-fluoro-6- methoxy-2-methyl-2H-indazol-5-yl)-5-(6-methyl-2,6-diazaspiro[3.4]octan-2-yl)thiazolo[5,4- b]pyridine-2-carboxamide (8 mg, 16.61 mol, 8.11% yield, 100% purity) as a white solid. LCMS ([M+H] = 482.2). ’H NMR: (400 MHz, CDC13) 5 ppm 9.84 (s, 1H), 8.55 (s, 1H), 8.08 (d, J = 9.2 Hz, 1H), 7.89 (d, J = 2.8 Hz, 1H), 6.48 (d, J = 9.2 Hz, 1H), 4.23 (d, J = 2.4 Hz, 3H), 4.21 (s, 3H), 4.14-4.17 (m, 2H), 4.07-4.10 (m, 2H), 2.90 (br s, 2H), 2.72 (br s, 2H), 2.46 (br s, 3H), 2.24 (br s, 2H).

[0601] Compounds made in a library fashion.

[0602] Example 33 - Compound 277

[0603] Preparation of (S)-N-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-6-((l-methylpyrrolidin- 2-yl)methoxy)thieno[2,3-b]pyridine-2-carboxanude.

[0604] Procedure:

[0605] To a solution of 1 (27.00 mg, 75.00 pmol, 1.00 eq.) and 2 (11.22 mg, 97.50 pmol, 1.30 eq.) in DMSO (0.50 mL) was added t-BuOK (IM in THF, 336.00 pL, 4 eq. under N2. The mixture was stirred at 80 °C for 3 hrs under microwave. The reaction mixture was purified by prep- HPLC (Column: Boston Prime C18 5um 150*30mm column; Condition: water (0.225%TFA v / v)-ACN; Gradient: 2%-42%) to give 3 (1.93 mg, 3.49 pmol, 4.65% yield, 100% purity).

[0606] LCMS: [M+H] = 440.1. LCMS tR(4.5 min): 1.979 min Example 34 - Compound 278

[0607] Preparation of N-(6-methoxy-2-methyl-2H-indazol-5-yl)-5-(6-methyl-2, 6- diazaspiro[3.3]heptan-2-yl)thiazolo[5,4-b]pyridine-2-carboxamide.

[0608] Procedure:

[0609] To a mixture of 1 (29.84 mg, 80.00 pmol, 1.00 eq.), 2 (19.14 mg, 104.00 pmol, 1.30 eq.), cesium carbonate (130.00 mg, 400.00 pmol, 5.00 eq.) and Pd-PEPPSI-IHept-CI (7.77 mg, 8.00 pmol, 0.10 eq., CAS: 1814936-54-3) in 8 mL vial was added THF (1.00 mL) under N2 atmosphere glove box. The mixture was stirred at 90 °C for 16 hrs. Checked by LCMS. The reaction mixture was diluted with H2O (5.00 mL) and extracted with EtOAc (5.00 mL*3). The combined organic layers were dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure to give the residue. The residue was purified by prep-HPLC (Column: Boston Prime C18 5um 150*30mm column; Condition: water (0.225%TFA v / v)-ACN; Gradient: 5%-45%) to give 3 (14 mg, 31.14 pmol, 38.93% yield, 100% purity). LCMS: [M+H] = 450.1.

[0610] Section 3. Biological Assay and Data

[0611] SMN Quantitative Splicing Assay

[0612] Dose response testing for compounds was performed by Quantitative Real Time PCR using SMA patient fibroblasts.

[0613] For each experimental run, frozen aliquots of Spinal muscular atrophy (SMA) patient fibroblasts (GM03813, Cori ell) were thawed from storage in liquid nitrogen in Complete SMA fibroblast assay medium. Complete SMA fibroblast assay medium is formulated using 500mL bottle of Phenol red free DMEM: 12 Media (ThermoFisher 21041025), supplemented with lOOmL Fetal Bovine Serum (ThermoFisher 21041025), 5mL Glutamax-I (ThermoFisher 35050-061), 5mL MEM Non-Essential Amino Acids Solution (100X) (ThermoFisher 11 MO- OSO), 5mL Sodium Pyruvate (lOOmM) (ThermoFisher 11360-070), 5mL Penicillin / Streptomycin (P / S) lOOx solution (10,000 U / mL) (ThermoFisher 15140122). Cells were plated in 384-well 384-well PDL coated cell culture plates (Corning 354663) at 4,000 cells / well at 50pL. Cells are allowed to attach overnight at 37°C at 5% in a high humidity incubator (Thermo insert model here). The next day, cells were dosed with compound.

[0614] An intermediate plate was used to pre-dilute compounds in Complete SMA fibroblast assay media. Compounds were both diluted and dispensed using an ECHO (Labcyte #Echo555) into an empty 384 well PP plate (Greiner 781280) at 160nL at concentrations ranging from lOmM to 0.5pM in DMSO. Each 384 well plate also contained 2 rows of 160nL DMSO (normalization control) and ImM Branaplam (positive control), and each run contained a full dose response of Branaplam and Risdiplam along with test compounds. A total of 40uL of media was added per well using a 384 well Integra Vialflo (Integra Biosciences 6031) mixed up and down, followed by a 16.7pL transfer to the cell plate. Cells treated at concentrations ranging from lOpM to 0.5nM (0.1% DMSO), with final concentration of Branaplam positive control was luM. Cell treatment was for 24 hours.

[0615] After 24 hours of culture, cells were lysed based on a procedure adapted from Kenneth Shatzkes, et al: " A simple, inexpensive method for preparing cell lysates suitable for downstream reverse transcription quantitative PCR", NATURE SCIENTIFIC REPORTS, Vol 4 4659 | DOI: 10.1038 / srep04659, 14, April 2014. Cell media was decanted and patted dry on laboratory paper towels, then 20uL of CL buffer (from Shatzkes, et al.) supplemented with 1 : 100 diluted RNAsin (Promega N2515), incubated at room temperature for 5 minutes, then sealed and frozen at -80°C for at least an hour to overnight or longer.

[0616] To analyze gene expression, lysate plates were thawed, then one step Quantitiative Real Time PCR (q-RT-PCR) was performed in a lOpL rxn using 2.5 pL TaqMan™ 1 Step Fast Virus Master Mix, lx of primers and probes shown in Table 2 below, and luL of lysate. RT were performed in batch by incubating the q-RT-PCR plates at 50°C for 5 minutes, the inactivating the RT at 95°C for 20 seconds, followed by allowing reactions to cool to room temperature in Cole Palmer PCRmax® Alpha Cyclers. qPCR was performed by activating the reaction at 95°C for 20 seconds, followed by 40 cycles of 95°C for 3 seconds, and 60°C for 30 seconds. Reactions were run in a Quantstudio 7 Flex qPCR instrument with default settings.

[0617] The curves were analyzed using the AACt method and plotted as percent of DMSO versus the compound concentration fitted to a variable 4-parameter logistic model. Table 2:

[0618] A summary of IC50 results is illustrated in Table 3, wherein “A” represents an IC50 value of less than 50 nM, “B” represents an IC50 value equal to or greater than 50 nM and less than or equal to 100 nM, “C” represents an IC50 value greater than 100 nM and less than or equal to 1 pM; and “D” represents an IC50 value of greater than 1 pM.

[0619] Table 3:

Claims

CLAIMSWhat is claimed is:

1. A method of treating spinal muscular atrophy (SMA) in a subject in need thereof comprising administering to the subject a therapeutically effective amount of a compound represented by the following structural formula:or a pharmaceutically acceptable salt thereof, wherein: is a single bond or double bond, provided the ring containing Xi and X2 is a 5- membered heteroaryl ring;“r1indicates that R1is substituted at one of two positions on the 6-membered ring to which the dash lines connect and the other position to which the dash lines connect is unsubstituted;Z is -C(=O)NR2R3or -NR2C(=O)R3;X1is S or CH;X2is N, O or CH; one of Y1and Y2is N and the other is CH;R1is 4 to 12 membered heterocyclyl, 4 to 12 membered carbocyclyl, -NRnR12, -Ci- ealkylene-NR13R14or -OR15wherein said 4 to 12 membered carbocyclyl or 4 to 12-membered heterocyclyl represented by R1is optionally substituted with one or more RA; wherein each RAis independently Ci-ealkyl, Cs-ecycloalkyl, Ci-ehaloalkyl, Ci- ealkoxyCi-ealkyl, -NRaRb, -Ci-3alkylene-NRaRb, -C3-6cycloalkylene-NRaRb, halo, -C(=O)Ra, or 4 to 6-membered saturated heterocyclyl; wherein each Raand Rbis independently H, Ci-ealkyl or Cs-ecycloalkyl; wherein said 4 to 6- membered saturated heterocyclyl or Cs-ecycloalkyl represented by RAis optionally substituted by one or more substituents independently selected form halo and Ci-ealkyl;R11is H or Ci-ealkyl;R12is Ci-ealkyl, 6 to 10-membered aryl, 4 to 12-membered heterocyclyl, or 5- 10 membered heteroaryl; wherein said Ci-ealkyl, 6 to 10-membered aryl, 4 to 12-membered heterocyclyl, or 5-10 membered heteroaryl represented by R12is optionally substituted by one or more RB; whereinRBis halo, Ci-ealkyl, -NRaRb, 4 to 6-membered heterocyclyl, or -Ci- ealkylene-4 to 6-membered heterocyclyl; wherein said 4 to 6-membered heterocyclyl represented by RBis optionally substituted by one or more Ci- ealkyl;R13is H or Ci-ealkyl;R14is selected from H, Ci-ealkyl, or -Ci-ealkylene-4-6 membered saturated heterocyclyl;R15is Ci-6alkyl-NRaRb, phenyl, 4 to 12-membered carbocyclyl, 4 to 12- membered heterocyclyl comprising at least one ring N atom, or -Ci-6alkylene-(4-6 membered saturated heterocyclyl comprising at least one ring N atom); wherein said phenyl, saturated heterocyclyl part of-Ci-6alkylene-(4-6 membered saturated heterocyclyl) or 4 to 12-membered carbocyclyl represented by R15is substituted with Ci-ealkyl, -NRaRb, Het, or -Ci-salkylene-Het, and Het is a 4 to 6-membered heterocyclyl comprising at least one ring N atom and is optionally substituted with one or two Ci-3alkyl; and wherein said 4 to 12-membered heterocyclyl represented by R15is optionally substituted by one or two Ci-3alkyl ;R2is H or Ci-3alkyl;R3is 6 to 10 membered aryl or 6 to 10 member heteroaryl, wherein said 6 to 10 membered aryl and 6 to 10 member heteroaryl represented by R3are optionally substituted by one or more Rc; whereinRcis halo, -CN, -OH, Ci-ealkyl, Ci-ehaloalkyl, or Ci-ealkoxy, or two Rctogether with the intervening atoms together form 5 to 7 membered heterocyclyl; wherein said 5 to 7 membered heterocyclyl represented by Rcis optionally substituted by RC1; where RC1is Ci-3alkyl or oxo; and wherein said heterocyclyl comprises 1-3 heteroatoms independently selected from oxygen, nitrogen, and sulfur; and said heteroaryl comprises 1-4 heteroatoms independently selected from oxygen, nitrogen, and sulfur; provided that the compound of formula (I’) is not represented by2. The method of claim 1, wherein the compound is represented by Formula (II):or a pharmaceutically acceptable salt thereof.

3. The method of claim 1, wherein the compound is represented by Formula (III):or a pharmaceutically acceptable salt thereof.

4. The method of claim 1, wherein the compound is represented by Formula (IV):or a pharmaceutically acceptable salt thereof.

5. The method of claim 1, wherein the compound is represented by Formula (V):or a pharmaceutically acceptable salt thereof.

6. The method of claim 1, wherein the compound is represented by Formula (VI):or a pharmaceutically acceptable salt thereof.

7. The method of claim 1, wherein the compound is represented by Formula (VII):or a pharmaceutically acceptable salt thereof.

8. The method of claim 1, wherein the compound is represented by Formula (VIII):R2A A .° (VIII) , or a pharmaceutically acceptable salt thereof.

9. The method of any one of claims 1-8, wherein R2is H.

10. The method of any one of claims 1-9, wherein R1is a 4 to 12 membered saturated heterocyclyl.

11. The method of any one of claims 1-10, wherein:R1is a 4 to 12 membered saturated heterocyclyl comprising one or two ring N atoms, provided when said heterocyclyl comprises one ring N atom, it is then optionally substituted with -NR7R8, -Ci-3alkylene-NR7R8, or -C3-6cycloalkylene-NR7R8and optionally further substituted with 1 to 4 R9, and when said heterocyclyl comprises two ring N atoms, it is optionally substituted with 1 to 3 R9;R7and R8are each independently H or Ci-ealkyl; alternatively R7and R8taken together with N to which they are attached forms a 4 to 6 membered heteterocycle optionally substituted with 1 to 2 Ci-ealkyl, wherein said 4 to 6 membered heteterocycle optionally comprisesa second hetero atom selected from N and O;R9, for each occurrence, is independently selected from halo, -C(=O)R10, Ci-ealkyl, Ci-ehaloalkyl, Ci-ealkoxyCi-ealkyl, and Cs-ecycloalkyl; wherein said Cs-ecycloalkyl represented by R9is optionally substituted by one or more substituents independently selected from halo and Ci-ealkyl; wherein R10is H, Ci-3alkyl, or Cs-ecycloalkyl.

12. The method of claim 11, wherein R1is a 4 to 12 membered saturated heterocyclyl comprising one ring N atom and is substituted with 1 to 4 R9.

13. The method of claim 12, wherein R1is selected from pyrrolidinyl, piperidinyl, azabicyclo[3.2.1]octanyl, and azaspiro[3.4]octanyl.

14. The method of claim 12, wherein R1is selected from:

15. The method of claim 11, wherein R1is a 4 to 12 membered saturated heterocyclyl comprising one ring N atom and is substituted with -NR7R8, -Ci-3alkylene-NR7R8or -C3- 6cycloalkylene-NR7R8and optionally further substituted with 1 to 2 R9.

16. The method of claim 15, wherein R1is a 4 to 12 membered saturated heterocyclyl selected from azetidinyl, piperidinyl, pyrrolidinyl, octahydro- IH-isoindolyl, and 3- azabicyclo[3.1.0]hexanyl, each of which is substituted with -NR7R8, -Ci-3alkylene-NR7R8or -C3-6cycloalkylene-NR7R8and optionally further substituted with 1 to 2 R9.

17. The method of claim 15, wherein R1is selected from, , each of which is substituted with -NR7R8, -Ci-3alkylene-NR7R8or -C3-6cycloalkylene-NR7R8and optionally further substituted with 1 to 2 R9.

18. The method of any one of claims 1-17, wherein R7and R8are each independently H or Ci-3alkyl; alternatively R7and R8taken together are C2-C4 alkylene, optionally substituted with 1 or 2 Ci-3alkyl.

19. The method of any one of claims 1-18, wherein R7and R8are each independently H, -CH3 or - CH2CH3; alternatively R7and R8taken together are - CH2CH2CH2CH2-, - CH2CH2CH2 - or -CH2C(CH3)2CH2-.

20. The method of any one of claims 15-17, wherein R1is selected from a group consisting of21. The method of claim 11, wherein R1is a 4 to 12 membered saturated heterocyclyl comprising two ring N atoms and is optionally substituted with 1 to 3 R9.

22. The method of claim 21, wherein the 4 to 12 membered saturated heterocyclyl represented by R1is piperazinyl, 4,7-diazaspiro[2.5]octanyl, 3,9-diazaspiro[5.5]undecanyl, 1- oxa-4,9-diazaspiro[5.5]undecanyl, diazabicyclo[2.2.2]octanyl, octahydro-2H-pyrido[4,3- b][l,4]oxazinyl, octahydro-lH-pyrrolo[2,3-c]pyridinyl, 2,5-diazabicyclo[2.

2. l]heptanyl, octahydropyrrol o[ 1 ,2-a]pyrazinyl, decahydro- 1 ,6-naphthyridinyl, 1 ,6-diazaspiro[3 ,4]octanyl, l,5-diazaspiro[3.4]octanyl, 2,6-diazaspiro[3.3]heptanyl, 2X2,5-diazaspiro[3.4]octanyl, 2X2,6- diazaspiro[3 ,4]octanyl, hexahydropyrrolo[3,4-c]pyrrolyl, octahydropyrrolo[3,4-c]pyrrolyl, octahydro-lH-pyrrolo[2,3-c]pyridinyl, octahydropyrrolo[3,4-b]pyrrolyl, 3,6- diazabicyclo[3.2.0]heptanyl, 1,4-diazepanyl, 2,6-diazaspiro[3.5]nonane, 2,6- diazabicyclo[3.2.0]heptanyl, or l,7-diazaspiro[4.4]nonanyl, each of which is optionally substituted with 1 to 3 R9.

23. The method of claim 22, wherein the 4 to 12 membered saturated heterocyclyl represented by R1is:each of which is optionally substituted 1 to 3 R9.

24. The method of any one of claims 1-9, wherein R1is 4 to 12 membered partially saturated heterocyclyl optionally substituted with 1, 2, 3 or 4 R9; and R9, for each occurrence, is independently selected from halo, -C(=O)R10, Ci-ealkyl, Ci-ehaloalkyl, Ci-ealkoxyCi-ealkyl, and Cs-ecycloalkyl; wherein said Cs-ecycloalkyl represented by R9is optionally substituted by one or more substituents independently selected from halo and Ci-ealkyl; wherein R10is H, Ci-3alkyl, or Cs-ecycloalkyl.

25. The method of claim 24, wherein the partially saturated heterocyclyl is 2, 3,4,5- tetrahydro-lH-pyrido[2,3-e][l,4]diazepine, 1,2,3,6-tetrahydropyridinyl, 6- azabicyclo[3.1.1]hept-2-enyl. or 8-azabicyclo[3.2.1]oct-2-enyl.

26. The method of any one of claim 24 or 25, wherein the partially saturated heterocyclyl is selected from a group consisting of:which is optionally substituted with 1, 2, 3 or 4 R9.

27. The method of any one of claims 1-9, wherein:R1is 4 to 12 membered saturated or partially saturated carbocyclyl substituted with - NR7R8and is further optionally substituted with 1 or 2 R9;R7and R8are each independently H or Ci-ealkyl; alternatively R7and R8taken together with N to which they are attached forms a 4 to 6 membered heteterocycle optionally substituted with 1 to 2 Ci-ealkyl, wherein said 4 to 6 membered heteterocycle optionally comprisesa second hetero atom selected from N and O; andR9, for each occurrence, is independently selected from halo, -C(=O)R10, Ci-ealkyl, Ci-ehaloalkyl, Ci-ealkoxyCi-ealkyl, and Cs-ecycloalkyl; wherein said Cs-ecycloalkyl represented by R9is optionally substituted by one or more substituents independently selected from halo and Ci-ealkyl; wherein R10is H, Ci-3alkyl, or Cs-ecycloalkyl.

28. The method of any one of claim 27, wherein R1is cyclohexyl or cyclohexenyl, each of which is substituted with -NR7R8and is further optionally substituted with 1 or 2 R9.

29. The method of any one of claim 27 or 28 thereof, wherein R1is selected fromeach of which is substituted with -NR7R8and is further optionally substituted with 1 or 2 R9.

30. The method of any one of claims 27 to 29, wherein R7and R8are each independently H or C i-3alkyl.

31. The method of any one of claims 27 to 29, wherein R7and R8are each independently H or -CH3.

32. The method of any one of claims 1-31, wherein R9, for each occurrence, is independently selected from halo, -C(=O)R10, Ci-4alkyl, Ci-4haloalkyl, and Cs-ecycloalkyl; wherein said Cs-ecycloalkyl represented by R9is optionally substituted by one to three substituents independently selected from F, Cl, and Ci-4alkyl; and R10is H, Ci-2alkyl, C3- 4cycloalkyl.

33. The method of any one of claims 1-31, wherein R9, for each occurrence, is independently selected from F, -CH3, -CH2CH3, -C(=O)CH3, -CH2CF3, -CH(CH3)2, -CD3, and cyclopropyl.

34. The method of any one of claims 1-9, wherein:R1is -NRnR12;R11is H or Ci-ealkyl;R12is Ci-6alkyl-NRaRb, phenyl, 4 to 12-membered heterocyclyl comprising at least one ring N atom; wherein said phenyl represented by R12is substituted with -NRaRb, Het, or -Ci-salkylene-Het, and Het is a 4 to 6-membered heterocyclyl comprising at least one ring N atom and is optionally substituted with one or two Ci-3alkyl; and wherein said 4 to 12- membered heterocyclyl represented by R12is optionally substituted by one, two, three, four or five R12a; wherein each R12ais independently Ci-3alkyl or halo.

35. The method of any one of claims 1-9 and 34, wherein:R1is -NRnR12;R11is H or -CH3;R12is selected from a group consisting of: piperidinyl, hexahydro-lH-pyrrolizinyl, octahydrocyclopenta[c]pyrrolyl, octahydroindolizinyl, isoindolinyl, phenylazetidinyl, 1, 2,3,4,5-tetrahydro-lH-benzo[e][l,4]diazepinyl, benzylpyrrolidinyl, and quinuclidinyl, each of which is optionaly substituted with one, two, three, four or five R12a; wherein R12ais Ci-3alkyl or halo.

36. The method of claim 34 or 35, wherein R12ais methyl or fluoro.

37. The method of any one of claims 1-9 and 34, wherein:R1is -NRnR12;R11is H or -CH3;R12is selected from a group consisting of:, each of which is optionaly substituted with one, two, three, four, or five substituents independently selected from, F, -CH3 and -CH2CH3.

38. The method of any one of claims 1-9, wherein:R1is -OR15;R15is Ci-6alkyl-NRaRb, phenyl, 4 to 12-membered carbocyclyl, 4 to 12-membered heterocyclyl comprising at least one ring N atom, -Ci-ealkylene-4-6 membered saturated heterocyclyl comprising at least one ring N atom; wherein said phenyl, saturated heterocyclyl part of-Ci-ealkylene-4-6 membered saturated heterocyclyl or 4 to 12-membered carbocyclyl represented by R15is substituted with Ci-ealkyl, -NRaRb, Het, or -Ci-3alkylene-Het, and Het is a 4 to 6-membered heterocyclyl comprising at least one ring N atom and is optionally substituted with one or two Ci-3alkyl; and wherein said 4 to 12-membered heterocyclyl represented by R15is optionally substituted by one or two Ci-3alkyl.

39. The method of claim 38, wherein R15is selected from piperidinyl, 2- pyrrolidinylmethyl, pyrrolidinyl, 8-azaspiro[4.5]decanyl, and 7-azaspiro[3.5]nonanyl, each of which is optionally substituted with one or two Ci-3alkyl or R15is cyclopentyl substituted with NRaRb; and Raand Rbare each independently H or Ci-3alkyl.

40. The method of claim 38, wherein:R1is -OR15;R15is selected from a group consisting of:, each of which is optionally substituted with one or two substituents independently selected from -CH3 and -CH2CH3; or R15is represented41. The method of any one of claims 1-40, wherein R3is a 9-membered bicyclic heteroaryl optionally substituted by one to three Rcor a phenyl fused with a 5-membered heterocyclyl optional substituted with one to three RC1.

42. The method of any one of claims 1-40, wherein R3is selected from a group consisting of indazolyl, imidazopyridinyl, imidazopyridazinyl, imidazopyrazinyl, benzothiazolyl, triazolopyrazinyl, benzooxazolyl, pyrazolopyrimidinyl, and benzothiadiazolyl, each of which is optionally substituted with one to three Rcor R3is l,3-dihydro-2H-benzo[d]imidazol-2- one or benzo[d]thiazol-2(3H)-one, each of which is optionally substituted with one or two RC1.

43. The method of claim 42, wherein R3is selected from a group consisting of:each of which is optionally substituted with one or two Rcl.

44. The method of any one of claims 1-43, wherein Rcfor each occurrence is independently halo, Ci-salkyl, Ci-2haloalkyl, or Ci-2alkoxy; and RC1for each occurrence is independently halo, Ci-salkyl or Ci-2alkoxy.

45. The method of claim 44, wherein Rcfor each occurrence is independently selected from -F, -CH3, -CH(CH3)2, -CF3, and -OCH3; and RC1for each occurance is -F, -CH3 or - OCH3.

46. The method of claim 1, wherein the compound is represented by Formula (II), or (III):or a pharmaceutically acceptable salt thereof, wherein::R1is -OR15, octahydro-lH-pyrrolo[2,3-c]pyridinyl, pyrrolidinyl, 2,6- diazaspiro[3.3]heptanyl, or 2X2,6-diazaspiro[3.4]octanyl, wherein said octahydro-lH- pyrrolo[2,3-c]pyridinyl, 2,6-diazaspiro[3.3]heptanyl, or 2X2,6-diazaspiro[3.4]octanyl is optionally substituted with 1 to 3 R9and said pyrrolidinyl is optionally substituted with - NR7R8and is further optionally substituted with 1 or 2 R9;R7and R8are each independently H or Ci-4alkyl; alternatively R7and R8taken together with N to which they are attached forms a 4 to 6 membered heteterocycle optionally substituted with 1 to 2 Ci-salkyl;R9, for each occurrence, is independently Ci-4alkyl;R15is -Ci-2alkyl-(5 or 6-membered heterocyclyl), wherein the heterocyclyl is piperidinyl optionally substituted with Ci-3alkyl;R2is H or methyl;R3is indazolyl, imidazopyridinyl or imidazopyrazinyl, wherein said imidazopyridinyl or imidazopyrazinyl is optionally substituted with one to two Rc; and said indazaloyl is substituted with one to three Rc;Rc, for each occurrence, is independently selected from Ci-4alkyl, Ci- 4alkoxy and halo.47 The method of claim 46, wherein R1selected from a group consisting of:each of which is optionally substituted with 1 or 2 R9; orR1is, which is is optionally substituted with -NR7R8.

48. The method of claim 46 or 47, wherein R7and R8taken together with N to which they are attached forms a 4 to 5 membered saturated heteterocycle.

49. The method of claim 48, wherein R7and R8taken together with N to which they are attached forms azetidinyl or pyrrolidinyl.50 The method of any one of claims 46-49,, wherein R3selected from a group consisting of:; , p y .

51. The method of any one of claims 46-50, wherein R9, for each occurrence, is -CH3.

52. The method of any one of claims 46-51, wherein Rc, for each occurrence, is independently selected from -CH3, -OCH3 and F.

53. The method of claim 1, wherein the compound is selected from Table 1, or a pharmaceutically acceptable salt thereof.

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