CAS9 mutants with improved activity with truncated pegrna in prime editing applications

Mutated Cas9 variants with specific mutations enhance prime editing activity with truncated pegRNAs, addressing synthesis challenges and improving editing efficiency and cargo capacity in prime editing technologies.

WO2026136327A1PCT designated stage Publication Date: 2026-06-25INTEGRATED DNA TECHNOLOGIES INC
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Patent Information

Authority / Receiving Office
WO · WO
Patent Type
Applications
Current Assignee / Owner
INTEGRATED DNA TECHNOLOGIES INC
Filing Date
2025-12-16
Publication Date
2026-06-25

AI Technical Summary

Technical Problem

Existing prime editing technologies face limitations with full-length pegRNAs, which are difficult to chemically synthesize and limit cargo capacity, necessitating the development of more potent Cas9 variants that can function with truncated pegRNAs for enhanced editing efficiency.

Method used

Development of prime editor variants with specific mutations in the Cas9 protein, such as E1071R, E1071K, T1065R, N758Y, A1034E, D180H, H420Q, Q894A, R40L, I122P, R215L, K961E, E1007L, K31Y, D364S, K382S, R457S, S42E, N193M, K649N, Q1364S, and F1008V, allowing them to bind to truncated pegRNAs with enhanced editing activity.

Benefits of technology

The mutated Cas9 variants exhibit at least 5-30% increased prime editing activity with truncated pegRNAs, facilitating easier synthesis and larger cargo capacities while maintaining precise gene editing capabilities.

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Abstract

Provided herein are Cas9 mutations with enhanced prime editing activity relative to wild type for use in prime editing using a truncated prime editing guide RNA.
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