T cell receptors and methods of use thereof
By designing a recombinant T-cell receptor (TCR) that specifically binds to gp100, the problem of targeting the non-mutated antigen gp100 in existing technologies has been solved, achieving a wider range of cancer treatment effects, especially in the specific recognition and targeting of gp100 in immuno-oncology.
Patent Information
- Authority / Receiving Office
- CN · China
- Patent Type
- Patents(China)
- Current Assignee / Owner
- Filing Date
- 2020-03-03
- Publication Date
- 2026-03-31
AI Technical Summary
Existing technologies are unable to effectively target the non-mutated antigen gp100, and the high polymorphism of the HLA gene hinders the specificity of anti-tumor T cell responses.
A recombinant T-cell receptor (TCR) that specifically binds to human gp100 was developed. It contains specific α- and β-chain amino acid sequences and inhibits the expression of endogenous TCRs via siRNA. It utilizes specific HLA alleles, such as the HLA-C*07 allele, to bind to the gp100 epitope, thereby achieving cross-competitive binding of TCRs.
It expands the applicability of anti-gp100 TCR therapy, improves the treatment effect for cancer patients, and enhances the specific recognition and targeting ability of gp100, especially in immuno-oncology.
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Figure CN113785064B_ABST
Abstract
Description
[0001] Cross-references to related applications
[0002] This PCT application claims priority to U.S. Provisional Application 62 / 813,650, filed March 4, 2019, which is incorporated herein by reference in its entirety.
[0003] References to sequence lists submitted electronically via EFS-WEB
[0004] The contents of the sequence list submitted electronically (name: 4285_006PC01_Seqlisting_ST25.txt, size: 56,699 bytes; and creation date: March 3, 2020) are incorporated herein by reference in their entirety. Technical Field
[0005] This disclosure provides a recombinant T-cell receptor (“TCR”) that specifically binds to human gp100 and its uses. Background of the Invention
[0007] Immunotherapy has emerged as a key tool in the fight against a variety of diseases, including cancer. T-cell therapy is at the forefront of immunotherapy development, and adoptive transfer of anti-tumor T cells has been shown to induce clinical responses in cancer patients. Although many T-cell therapies target mutated tumor antigens, the vast majority of neoantigens are not common to each patient but are unique.
[0008] The number of potential non-mutated antigens exceeds that of mutated antigens by several orders of magnitude. Elucidating T-cell epitopes derived from shared antigens could facilitate the robust development of effective and safe adoptive T-cell therapies readily available to a large population of cancer patients. However, the absolute number of non-mutated antigens and the high polymorphism of HLA genes may have hindered a comprehensive analysis of the specificity of anti-tumor T-cell responses to non-mutated antigens.
[0009] This disclosure provides novel epitopes of the nonmutated antigen gp100 and TCRs capable of specifically binding to said epitopes. These novel epitopes are associated with specific HLA alleles. The use of these tumor-responsive HLA-restricted gp100 TCRs supports the applicability of broadened anti-gp100 TCR gene therapy, particularly in immuno-oncology. Summary of the Invention
[0010] Certain aspects of this disclosure relate to a nucleic acid molecule comprising (i) a first nucleotide sequence encoding a recombinant T-cell receptor (TCR) or its antigen-binding portion (“anti-gp100 TCR”) that specifically binds to human gp100; and (ii) a second nucleotide sequence, wherein the second nucleotide sequence or a polypeptide encoded by the second nucleotide sequence inhibits the expression of an endogenous TCR, wherein the anti-gp100 TCR cross-competitively binds to human gp100 with a reference TCR comprising an α chain and a β chain, and wherein the α chain comprises an amino acid sequence as listed in SEQ ID NO:1 and the β chain comprises an amino acid sequence as listed in SEQ ID NO:2.
[0011] Certain aspects of this disclosure relate to a nucleic acid molecule comprising (i) a first nucleotide sequence encoding a recombinant T-cell receptor (TCR) or its antigen-binding portion (“anti-gp100 TCR”) that specifically binds to human gp100; and (ii) a second nucleotide sequence, wherein the second nucleotide sequence or a polypeptide encoded by the second nucleotide sequence inhibits the expression of endogenous TCRs, wherein the anti-gp100 TCR binds to the same or overlapping epitopes of human gp100 as a reference TCR, the reference TCR comprising an α chain and a β chain, wherein the α chain comprises an amino acid sequence as listed in SEQ ID NO:1 and the β chain comprises an amino acid sequence as listed in SEQ ID NO:2.
[0012] In some embodiments, the anti-gp100 TCR binds to an epitope of gp100 consisting of an amino acid sequence as listed in SEQ ID NO:13. In some embodiments, the epitope is complexed with an HLA class I molecule.
[0013] In some embodiments, the HLA class I molecule is an HLA-A, HLA-B, HLA-C, HLA-E, HLA-F, or HLA-G allele. In some embodiments, the HLA class I molecule is the HLA-C*07 allele. In some embodiments, the HLA class I molecule is selected from the HLA-C*07:01, HLA-C*07:02, HLA-C*07:03, HLA-C*07:04, HLA-C*07:05, HLA-C*07:06, HLA-C*07:07, and HLA-C*07:08 alleles. In some embodiments, the HLA class I molecule is the HLA-C*07:01 allele.
[0014] In some embodiments, the anti-gp100 TCR comprises an α chain and a β chain, wherein the α chain includes a variable region containing α chain CDR1, α chain CDR2, and α chain CDR3; and wherein the β chain includes a variable domain containing β chain CDR1, β chain CDR2, and β chain CDR3; wherein the α chain CDR3 comprises the amino acid sequence as listed in SEQ ID NO:7. In some embodiments, the β chain CDR3 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:10.
[0015] In some embodiments, the anti-gp100 TCR comprises an α chain and a β chain, wherein the α chain includes a variable region containing α chain CDR1, α chain CDR2, and α chain CDR3; and wherein the β chain includes a variable domain containing β chain CDR1, β chain CDR2, and β chain CDR3; wherein the β chain CDR3 of the anti-gp100 TCR comprises the amino acid sequence listed in SEQ ID NO:10. In some embodiments, the α chain CDR3 of the anti-gp100 TCR comprises the amino acid sequence listed in SEQ ID NO:7.
[0016] In some embodiments, the α-chain CDR1 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:5. In some embodiments, the β-chain CDR1 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:8. In some embodiments, the α-chain CDR2 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:6. In some embodiments, the β-chain CDR2 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:9.
[0017] In some embodiments, the α-chain variable domain of the anti-gp100 TCR comprises the amino acid sequence of the variable domain present in the amino acid sequence listed in SEQ ID NO:1. In some embodiments, the β-chain variable domain of the anti-gp100 TCR comprises the amino acid sequence of the variable domain present in the amino acid sequence listed in SEQ ID NO:2.
[0018] In some embodiments, the anti-gp100 TCR α-chain further comprises a constant region, wherein said constant region is different from the endogenous constant region of said α-chain. In some embodiments, the anti-gp100 TCR α-chain further comprises a constant region, wherein said α-chain constant region comprises an amino acid sequence having at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the constant region present in the amino acid sequence listed in SEQ ID NO:1. In some embodiments, the α-chain constant region comprises an amino acid sequence comprising at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the constant region present in the amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR β-chain further comprises a constant region, wherein said constant region is different from the endogenous constant region of said β-chain.
[0019] In some embodiments, the anti-gp100 TCR β-chain further comprises a constant region, wherein the β-chain constant region comprises an amino acid sequence having at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the constant region present in the amino acid sequence listed in SEQ ID NO:2. In some embodiments, the β-chain constant region comprises an amino acid sequence comprising at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the constant region present in the amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR α-chain comprises an amino acid sequence as listed in SEQ ID NO:1.
[0020] In some embodiments, the β-chain of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:2. In some embodiments, the second nucleotide sequence is one or more siRNAs that reduce the expression of endogenous TCRs.
[0021] In some embodiments, the one or more siRNAs are complementary to a target sequence within a nucleotide sequence encoding a constant region of an endogenous TCR. In some embodiments, the one or more siRNAs comprise one or more nucleotide sequences selected from the group consisting of SEQ ID NO:53-56.
[0022] In some implementations, the second nucleotide sequence encodes Cas9.
[0023] In some embodiments, the anti-gp100 TCR comprises an α-chain constant region, a β-chain constant region, or both; and wherein the α-chain constant region, β-chain constant region, or both comprise an amino acid sequence having at least one, at least two, at least three, at least four, or at least five substituted amino acid sequences relative to the endogenous TCR within the target sequence.
[0024] Certain aspects of this disclosure relate to a vector comprising the nucleic acid molecules disclosed herein. In some embodiments, the vector is a viral vector, a mammalian vector, or a bacterial vector. In some embodiments, the vector is a retroviral vector. In some embodiments, the vector is selected from the group consisting of: adenovirus vectors, lentiviruses, Sendai virus vectors, baculovirus vectors, Epstein-Barr viral vectors, multivaccinia virus vectors, vaccinia virus vectors, herpes simplex virus vectors, hybrid vectors, and adeno-associated virus (AAV) vectors. In some embodiments, the vector is a lentivirus.
[0025] Certain aspects of this disclosure relate to a T-cell receptor (TCR) or its antigen-binding portion comprising the α-chain variable domain of the anti-gp100 TCR disclosed herein and the β-chain variable domain of the anti-gp100 TCR disclosed herein. In some embodiments, the recombinant T-cell receptor (TCR) specifically binding to human gp100 or its antigen-binding portion (“anti-gp100 TCR”) cross-competitively binds to human gp100 with a reference TCR; wherein the reference TCR comprises an α chain and a β chain, and wherein the α chain comprises the amino acid sequence as listed in SEQ ID NO:1 and the β chain comprises the amino acid sequence as listed in SEQ ID NO:2; and wherein the anti-gp100 TCR comprises an α chain and a β chain, wherein the α chain comprises a constant region, and wherein the β chain comprises a constant region; wherein (i) the constant region of the α chain comprises an amino acid sequence having at least 1, at least 2, at least 3, at least 4, or at least 5 amino acid substitutions relative to the constant region present in the amino acid sequence listed in SEQ ID NO:1, or (ii) the constant region of the β chain comprises an amino acid sequence having at least 1, at least 2, at least 3, at least 4, or at least 5 amino acid substitutions relative to the constant region present in the amino acid sequence of SEQ ID NO:2.
[0026] Certain aspects of this disclosure relate to a recombinant T-cell receptor (TCR) or its antigen-binding portion (“anti-gp100 TCR”) that specifically binds to human gp100, having the same or overlapping epitopes as a reference TCR binding to human gp100; wherein the reference TCR comprises an α chain and a β chain, and wherein the α chain comprises an amino acid sequence as listed in SEQ ID NO:1 and the β chain comprises an amino acid sequence as listed in SEQ ID NO:2; and wherein the anti-gp100 TCR comprises an α chain and a β chain, wherein the α chain comprises a constant region, and wherein the β chain comprises a constant region; wherein (i) the constant region of the α chain comprises an amino acid sequence having at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the constant region present in the amino acid sequence listed in SEQ ID NO:1, or (ii) the constant region of the β chain comprises an amino acid sequence having at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the constant region present in the amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR binds to an epitope of gp100 consisting of an amino acid sequence as listed in SEQ ID NO: 13.
[0027] In some embodiments, the epitope is complexed with an HLA class I molecule. In some embodiments, the HLA class I molecule is an HLA-A, HLA-B, HLA-C, HLA-E, HLA-F, or HLA-G allele. In some embodiments, the HLA class I molecule is the HLA-C*07 allele. In some embodiments, the HLA class I molecule is selected from the HLA-C*07:01, HLA-C*07:02, HLA-C*07:03, HLA-C*07:04, HLA-C*07:05, HLA-C*07:06, HLA-C*07:07, and HLA-C*07:08 alleles. In some embodiments, the HLA class I molecule is the HLA-C*07:01 allele.
[0028] In some embodiments, the anti-gp100 TCR α-chain comprises a variable domain containing α-chain CDR1, α-chain CDR2, and α-chain CDR3; and the anti-gp100 TCR β-chain comprises a variable domain containing β-chain CDR1, β-chain CDR2, and β-chain CDR3; wherein the anti-gp100 α-chain CDR3 comprises the amino acid sequence as listed in SEQ ID NO:7. In some embodiments, the anti-gp100 TCR β-chain CDR3 comprises the amino acid sequence as listed in SEQ ID NO:10.
[0029] In some embodiments, the anti-gp100 TCR α-chain comprises a variable domain containing α-chain CDR1, α-chain CDR2, and α-chain CDR3; and the anti-gp100 TCR β-chain comprises a variable domain containing β-chain CDR1, β-chain CDR2, and β-chain CDR3; wherein the anti-gp100 TCR β-chain CDR3 comprises the amino acid sequence listed in SEQ ID NO:10. In some embodiments, the anti-gp100 TCR α-chain CDR3 comprises the amino acid sequence listed in SEQ ID NO:7.
[0030] In some embodiments, the α-chain CDR1 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:5. In some embodiments, the β-chain CDR1 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:8. In some embodiments, the α-chain CDR2 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:6. In some embodiments, the β-chain CDR2 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:9.
[0031] In some embodiments, the α-chain variable domain of the anti-gp100 TCR comprises the amino acid sequence of the variable domain present in the amino acid sequence listed in SEQ ID NO:1. In some embodiments, the β-chain variable domain of the anti-gp100 TCR comprises the amino acid sequence of the variable domain present in the amino acid sequence listed in SEQ ID NO:2.
[0032] In some embodiments, the α-chain constant region comprises an amino acid sequence having at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the amino acid sequence present in the constant region listed in SEQ ID NO:1.
[0033] In some embodiments, the β-chain constant region comprises an amino acid sequence having at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the amino acid sequence present in the constant region listed in SEQ ID NO:2.
[0034] In some embodiments, the α-chain of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:1. In some embodiments, the β-chain of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:2.
[0035] Certain aspects of this disclosure relate to a bispecific TCR comprising a first antigen-binding domain and a second antigen-binding domain, wherein the first antigen-binding domain comprises a TCR disclosed herein or an antigen-binding portion thereof, or a TCR disclosed herein or an antigen-binding portion thereof. In some embodiments, the first antigen-binding domain comprises a single-chain variable fragment (“scFv”). In some embodiments, the second antigen-binding domain specifically binds to a protein expressed on the surface of a T cell. In some embodiments, the second antigen-binding domain specifically binds to CD3. In some embodiments, the second antigen-binding domain comprises scFv. In some embodiments, the first and second antigen-binding domains are covalently linked or associated. In some embodiments, the first and second antigen-binding domains are linked by a peptide bond.
[0036] Certain aspects of this disclosure relate to a cell comprising the nucleic acid molecules disclosed herein, the vectors disclosed herein, the TCRs disclosed herein, the recombinant TCRs disclosed herein, or the bispecific TCRs disclosed herein. In some embodiments, the cell further expresses CD3. In some embodiments, the cell is selected from the group consisting of T cells, natural killer (NK) cells, natural killer T (NKT) cells, or ILC cells.
[0037] Certain aspects of this disclosure relate to a method of treating a subject with cancer, the method comprising administering the cells disclosed herein to the subject. In some embodiments, the cancer is selected from the group consisting of: melanoma, bone cancer, pancreatic cancer, skin cancer, head and neck cancer, uterine cancer, ovarian cancer, rectal cancer, anal cancer, gastric cancer, testicular cancer, uterine cancer, fallopian tube cancer, endometrial cancer, cervical cancer, vaginal cancer, vulvar cancer, Hodgkin's disease. Diseases, non-Hodgkin's lymphoma (NHL), primary mediastinal large B-cell lymphoma (PMBC), diffuse large B-cell lymphoma (DLBCL), follicular lymphoma (FL), transformed follicular lymphoma, splenic marginal zone lymphoma (SMZL), esophageal cancer, small bowel cancer, endocrine system cancer, thyroid cancer, parathyroid cancer, adrenal cancer, soft tissue sarcoma, urethral cancer, penile cancer, chronic or acute leukemia, acute myeloid leukemia, chronic myeloid leukemia, acute lymphoblastic leukemia (ALL) (including non-T-cell ALL), chronic lymphocytic leukemia (CLL), childhood solid tumors, lymphocytic lymphoma, bladder cancer, kidney or ureter cancer, renal pelvis cancer, central nervous system (CNS) sarcoma, primary CNS lymphoma, tumor angiogenesis, spinal axis tumors, brainstem glioma, pituitary adenoma, Kaposi's sarcoma. Sarcoma), epidermoid carcinoma, squamous cell carcinoma, T-cell lymphoma, environmentally induced cancers (including those induced by asbestos), other B-cell malignancies, and combinations thereof.
[0038] In some embodiments, the cancer is recurrent or refractory. In some embodiments, the cancer is locally advanced. In some embodiments, the cancer is advanced. In some embodiments, the cancer is metastatic.
[0039] In some embodiments, the cells are obtained from a subject. In some embodiments, the cells are obtained from a donor other than the subject. In some embodiments, the subject is pretreated prior to administration of the cells. In some embodiments, the pretreatment includes administering chemotherapy, cytokines, proteins, small molecules, or any combination thereof to the subject. In some embodiments, the pretreatment includes administering interleukins. In some embodiments, the pretreatment includes administering IL-2, IL-4, IL-7, IL-9, IL-15, IL-21, or any combination thereof. In some embodiments, the pretreatment includes administering a pretreatment agent selected from the group consisting of cyclophosphamide, fludarabine, vitamin C, AKT inhibitors, ATRA, rapamycin, or any combination thereof. In some embodiments, the pretreatment includes administering cyclophosphamide, fludarabine, or both.
[0040] Certain aspects of this disclosure relate to a method for engineering cells that target an antigen, the method comprising transducing cells collected from a subject requiring T-cell therapy using nucleic acids or vectors disclosed herein. In some embodiments, the antigen-targeting cells further express CD3. In some embodiments, the cells are T cells or natural killer (NK) cells.
[0041] Some aspects of this disclosure relate to an HLA class I molecule complexed with a peptide, wherein the HLA class I molecule comprises an α1 domain, an α2 domain, an α3 domain, and a β2m domain, and wherein the peptide consists of an amino acid sequence as listed in SEQ ID NO:14.
[0042] In some embodiments, the HLA class I molecule is HLA-A, HLA-B, HLA-C, HLA-E, HLA-F, or HLA-G. In some embodiments, the HLA class I molecule is HLA-C. In some embodiments, the HLA class I molecule is the HLA-C*06 allele. In some embodiments, the HLA class I molecule is selected from the HLA-C*07:01 allele, HLA-C*07:02 allele, HLA-C*07:03 allele, HLA-C*07:04 allele, HLA-C*07:05 allele, HLA-C*07:06 allele, HLA-C*07:07 allele, and HLA-C*07:08 allele. In some embodiments, the HLA class I molecule is the HLA-C*07:01 allele. In some implementations, the HLA class I molecule is the HLA-C*07:02 allele.
[0043] In some embodiments, the HLA class I molecule is a monomer. In some embodiments, the HLA class I molecule is a dimer. In some embodiments, the HLA class I molecule is a trimer. In some embodiments, the HLA class I molecule is a tetramer. In some embodiments, the HLA class I molecule is a pentamer.
[0044] Certain aspects of this disclosure relate to an antigen-presenting cell (APC) that contains HLA class I molecules disclosed herein. In some embodiments, the HLA class I molecules are expressed on the surface of the APC.
[0045] Some aspects of this disclosure relate to a method for enriching a population of target T cells obtained from a human subject, the method comprising contacting the T cells with an HLA class I molecule disclosed herein or an APC disclosed herein, wherein after the contact, the enriched population of T cells contains a higher number of T cells capable of binding the HLA class I molecule compared to the number of T cells capable of binding the HLA class I molecule before the contact.
[0046] Some aspects of this disclosure relate to a method for enriching a population of target T cells obtained from a human subject, the method comprising contacting the T cells in vitro with a peptide, wherein the peptide consists of an amino acid sequence as listed in SEQ ID NO:13, wherein after the contact, the enriched population of T cells contains a higher number of T cells capable of targeting tumor cells compared to the number of T cells capable of targeting tumor cells before the contact.
[0047] In some implementations, the T cells obtained from the human subject are tumor-infiltrating lymphocytes (TILs).
[0048] Some aspects of this disclosure relate to a method for treating a tumor in a subject in need, the method comprising administering to the subject an enriched population of T cells disclosed herein.
[0049] Some aspects of this disclosure relate to a method for enhancing cytotoxic T-cell-mediated cancer cell targeting in a subject with cancer, the method comprising administering to the subject a peptide having an amino acid sequence as listed in SEQ ID NO:13.
[0050] Some aspects of this disclosure relate to a cancer vaccine comprising a peptide having an amino acid sequence as listed in SEQ ID NO:13.
[0051] Some aspects of this disclosure relate to a method for selecting T cells capable of targeting tumor cells, the method comprising contacting a population of isolated T cells in vitro with a peptide, wherein the peptide comprises an amino acid sequence as listed in SEQ ID NO:11. In some embodiments, the T cells are tumor-infiltrating lymphocytes (TILs). Attached Figure Description
[0052] Figure 1 Bar graph illustrating the number of C*07:01 / gp100 T cells in melanoma TILs after stimulation with an artificial APC treated with overlapping peptide pulses. In IFN-γELISPOT analysis, TILs stimulated once with an artificial APC treated with overlapping peptide pulses to cover the full protein of gp100 were used as responding cells. C*07:01-artificial APCs treated with overlapping peptide pulses derived from gp100 were used as stimulating cells. After one controlled peptide-specific stimulation, TILs showed responses to cells with a common sequence. 476 VLYRYGSFSVTLDIV 490 Positive responses from two adjacent peptides. (See also Table 5).
[0053] Figures 2A-2D C*07:01 / gp100 for melanoma TIL 479-487 Graphical representation of multimer staining. Using gp100 with TIL. 479 RYGSFSVTL 487 Peptide pulse treatment C*07:01 - one artificial APC stimulation. Showing information prior to stimulation (day 0); Figure 2A and 2C ) and 14 days after stimulation (day 14; Figure 2B and 2D )C*07:01 / gp100 479-487 ( Figure 2A-2B (or refer to C*07:01 / HIV nef) 105-115 ( Figure 2C-2D Data on multimer staining. Showing CD8. + T cell multimer + Percentage of cells.
[0054] Figure 3 To show C*07:01 / gp100 479-487 Bar graph for functional assessment of triglyceride endothelial cells (TILs) in multimer-positive melanomas. Following a single peptide-specific stimulation, TILs showed a functional response at C*07:01 / gp100. 479-487 IFN-γ is generated in a specific manner. In IFN-γ ELISPOT analysis, gp100 is used... 479-487TILs treated once with peptide pulse-treated C*07:01-artificial APC were used as responsive cells. C*07:01-artificial APC treated with the indicated peptide pulse was used as the stimulating cell. HIV nef 105-115 and gp100 479-486 Peptides were used as controls. Triples were performed, and the error bars are shown as SD. ***P<0.001.
[0055] Figure 4A-4I For use in the case of homopolymers, C*07:01 / gp100 479-487 A graphical representation of positive staining in Jurkat76 / CD8 cells transduced with the TCR gene. The staining will be represented using C*07:01 / gp100. 479-487 TCR( Figure 4B , 4E Jurkat 76 / CD8 cells transduced with 4H were treated with C*07:01 / gp100 479-487 polymers ( Figure 4B Staining was performed using C*07:01 / HIV nef. 105-115 polymers ( Figure 4D , 4E and 4F), C*07:01 / unexchangeable polymer ( Figure 4G , 4H and 4I) and use C*07:02 / MAGE-A1 289-297 TCR (clones CL2); Figure 4C , 4F and 4I) transduction and non-transduction ( Figure 4A , 4D Jurkat 76 / CD8 cells (4G) were used as a control. Multimers were observed. + CD8 + Percentage of cells.
[0056] Figures 5A-5D For use in the case of homopolymers, C*07:01 / gp100 479-487 TCR gene ( Figure 5B and 5D A graphical representation of positive staining in transduced human primary T cells. (Using C*07:01 / gp100) 479-487 TCR-transduced primary T cells were treated with C*07:01 / gp100 479-487 ( Figure 5B ) or C*07:01 / HIV nef 105-115 control polymer ( Figure 5D Staining. Untransduced primary T cells were used as a negative control. Figure 5A and 5C (Displays polymers) + CD8+ The percentage of T cells.
[0057] Figure 6 To illustrate using C*07:01 / gp100 479-487 A bar graph showing the strong reaction of TCR gene-transduced human primary T cells with homologous peptides presented by target class I molecules. In the IFN-γ ELISPOT analysis, C*07:01 / gp100 will be used. 479-487 Primary T cells transduced with the TCR gene or untransduced primary T cells were used as responder cells. HLA-deleted artificial APCs or gp100 were employed. 479-487 or HIV nef 105-115 Peptide (control) pulse treatment with C*07:01-artificial APCs was used as the stimulator for cells. Triples were performed, and the error bars are shown as SD. *P<0.05, **P<0.01.
[0058] Figure 7A To illustrate using C*07:01 / gp100 479-487 A graphical representation of primary T cells transduced with the TCR gene recognizing tumor cells. In the IFN-γ ELISPOT analysis, C*07:01 / gp100 was used. 479-487 Primary T cells transduced with the TCR gene or untransduced primary T cells serve as responding cells. For example... Figure 7B ( Figure 7A As indicated in the legend, ACHN and A375 cells, either untransduced or transduced with HLA-C*07:01 and / or gp100, were used as stimulating cells. Experiments were performed in triplicate, and error bars are shown for SD. **P<0.01, ***P<0.001.
[0059] Figures 8A-8E Graphical representation of the expression of gp100, derived from endogenous or transduced full-length genes. Expression of gp100, derived from endogenous or transduced full-length genes, in target cells was analyzed by intracellular flow cytometry after staining with anti-gp100 mAb (hollow curve) and isotype control (solid curve).
[0060] Figures 9A-9B ΔNGFR in A375 target cells transduced with the full-length HLA-C*07:01 gene labeled with ΔNGFR ( Figure 9B Graphical representation of expression in ). Surface expression of ΔNGFR in target cells transduced with the full-length HLA-C*07:01 gene labeled with ΔNGFR was analyzed by flow cytometry after staining with anti-NGFR mAb (hollow curve) and isotype control (solid curve). ΔNGFR alone was used as a control ( Figure 9A ). Detailed Implementation
[0061] This disclosure relates to a TCR or its antigen-binding portion that specifically binds to an epitope on gp100, a nucleic acid molecule encoding said TCR, and a cell containing said TCR or said nucleic acid molecule. Some aspects of this disclosure relate to methods of treating cancer in a subject of need, said methods including administering said cells to said subject. Other aspects of this disclosure relate to HLA class I molecules complexed with a peptide containing an epitope of gp100.
[0062] I. Terminology
[0063] To make this disclosure more readily understandable, certain terms are first defined. As used in this application, each of the following terms shall have the meaning set forth below unless expressly provided otherwise herein. Other definitions are set forth in this application.
[0064] It should be noted that the term "a / an" refers to one or more of the entities described; for example, "a nucleotide sequence" should be understood to mean one or more nucleotide sequences. Therefore, the terms "a / an," "one or more / species," and "at least one / species" are used interchangeably herein.
[0065] Furthermore, when used herein, "and / or" should be considered as specifically disclosing each of the two specified features or components, in the presence or absence of the other. Therefore, the term "and / or," when used herein in phrases such as "A and / or B," is intended to include "A and B," "A or B," "A" (alone), and "B" (alone). Similarly, the term "and / or," when used herein in phrases such as "A, B, and / or C," is intended to cover each of the following: A, B, and C; A, B, or C; A or C; A or B; B or C; A and C; A and B; B and C; A (alone); B (alone); and C (alone).
[0066] The term “about” is used herein to mean approximately, roughly, about, or near. When the term “about” is used in conjunction with a numerical range, it modifies the range by expanding the boundaries above and below the stated value. Generally, the term “about” is used herein to modify values that are higher or lower than the stated value by a deviation of 10% upwards or downwards (higher or lower).
[0067] It should be understood that wherever the word “comprising” is used in this document to describe aspects, other similar aspects described in other ways by the terms “composed of” and / or “substantially composed of” are also provided.
[0068] Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art. For example, the Concise Dictionary of Biomedicine and Molecular Biology, Juo, Pei-Show, 2nd edition, 2002, CRC Press; The Dictionary of Cell and Molecular Biology, 3rd edition, 1999, Academic Press; and the Oxford Dictionary of Biochemistry and Molecular Biology, revised edition, 2000, Oxford University Press provide those skilled in the art with comprehensive dictionaries of many terms used in this disclosure.
[0069] Units, prefixes, and symbols are represented in their form as accepted by the International System of Units (SI). Numerical ranges include the numbers defining the range. Unless otherwise indicated, nucleotide sequences are written from left to right in a 5' to 3' direction. Amino acid sequences are written from left to right in an amino-to-carboxyl direction. The headings provided herein are not intended to limit the various aspects of this disclosure and may be taken as such by reference to the specification as a whole. Therefore, the terms defined below immediately are defined more fully by reference to this specification in its entirety.
[0070] "Administration" means the physical introduction of an agent into a subject using any of the various methods and delivery systems known to those skilled in the art. Exemplary routes of administration for the formulations disclosed herein include intravenous, intramuscular, subcutaneous, intraperitoneal, spinal, or other parenteral administration routes, such as by injection or infusion. As used herein, the phrase "parenteral administration" refers to a mode of administration other than enteral and local administration, typically by injection, and includes, but is not limited to, intravenous, intramuscular, intraarterial, intrasheath, intralymphatic, intralesional, intracapsular, intracardiac, intradermal, intraperitoneal, tracheal, subcutaneous, subepidermal, intra-articular, subcapsular, subarachnoid, intraspinal, epidural, and intrasternal injections and infusions, as well as in vivo electroporation. In some embodiments, the formulation is administered via a non-parenteral route (e.g., orally). Other non-parenteral routes include local, transdermal, or transmucosal administration routes, such as intranasal, vaginal, rectal, sublingual, or local administration. It can also be applied, for example, once, multiple times, and / or over one or more extended time periods.
[0071] As used herein, the term “T cell receptor” (TCR) refers to a heterogeneous cell surface receptor capable of specifically interacting with a target antigen. As used herein, “TCR” includes, but is not limited to, naturally occurring and non-naturally occurring TCRs; full-length TCRs and their antigen-binding portions; chimeric TCRs; TCR fusion constructs; and synthetic TCRs. In humans, TCRs are expressed on the surface of T cells and are responsible for T cell recognition and targeting by antigen-presenting cells. Antigen-presenting cells (APCs) display fragments of foreign proteins (antigens) that are complexed with the major histocompatibility complex (MHC; also referred to herein as complexed with HLA molecules, such as HLA class 1 molecules). TCRs recognize and bind to the antigen:HLA complex and recruit CD3 (expressed by T cells), thereby activating the TCR. Activated TCRs initiate downstream signaling and immune responses, including the disruption of EPCs.
[0072] Generally, a TCR may consist of two chains interconnected by disulfide bonds, an α-chain and a β-chain (or less commonly, a γ-chain and a δ-chain). Each chain contains variable domains (α-chain variable domains and β-chain variable domains) and constant regions (α-chain constant regions and β-chain constant regions). The variable domains are located at the distal end of the cell membrane and interact with the antigen. The constant regions are located at the proximal end of the cell membrane. A TCR may also contain a transmembrane region and a short cytoplasmic tail. As used herein, the term "constant region" encompasses both the transmembrane region and the cytoplasmic tail (when present) as well as the conventional "constant region".
[0073] The variable domains can be further subdivided into highly variable regions, called complementarity-determining regions (CDRs), which are scattered with more conserved regions called framework regions (FRs). Each α-chain and β-chain variable domain contains three CDRs and four FRs: FR1, CDR1, FR2, CDR2, FR3, CDR3, and FR4. Each variable domain contains a binding domain that interacts with the antigen. Although all three CDRs on each chain participate in antigen binding, CDR3 is believed to be the primary antigen-binding region. CDR1 also interacts with the antigen, while CD2 is believed to primarily recognize the HLA complex.
[0074] Unless explicitly stated otherwise, and unless the context otherwise indicates, the term “TCR” also includes antigen-binding fragments or portions of any TCR disclosed herein, and includes monovalent and bivalent fragments or portions, and single-chain TCRs. The term “TCR” is not limited to naturally occurring TCRs bound to the surface of T cells. As used herein, the term “TCR” further refers to TCRs expressed on the surface of cells other than T cells (e.g., cells naturally expressed or modified to express CD3 as described herein), or TCRs without a cell membrane as described herein (e.g., isolated TCRs or soluble TCRs).
[0075] "Antigen-binding molecule," "part of TCR," or "TCR fragment" refers to any portion of the TCR smaller than the whole. Antigen-binding molecules may include antigen complementarity-determining regions (CDRs).
[0076] "Antigen" refers to any molecule, such as a peptide, that elicits an immune response or is capable of binding to a TCR. As used herein, "epitope" refers to a portion of a polypeptide that elicits an immune response or is capable of binding to a TCR. An immune response may involve antibody production or activation of cells with specific immune activity, or both. Those skilled in the art will readily understand that any macromolecule, including virtually all proteins or peptides, can act as an antigen. Antigens and / or epitopes may be expressed endogenously, i.e., expressed from genomic DNA, or may be recombinantly expressed. Antigens and / or epitopes may be specific to a particular tissue (such as cancer cells), or they may be widely expressed. Furthermore, fragments of larger molecules may act as antigens. In one embodiment, the antigen is a tumor antigen. Epitopes may be present in longer polypeptides (e.g., proteins), or epitopes may be present as fragments of longer polypeptides. In some embodiments, the epitope is complexed with a major histocompatibility complex (MHC; also referred to herein as complexed with HLA molecules, such as HLA class 1 molecules).
[0077] As used herein, “gp100,” “glycoprotein 100,” “melanocyte protein PMEL,” or “ME20M” refers to a tumor antigen expressed in, for example, melanoma. gp100 is a hydrophobic glycoprotein of 661 amino acids with a molecular weight of 70 kDa (GenBank accession number NM_006928). See, for example, Eisenberg et al., Cell Imunol. 266(1):98-103 (2010). In vivo, gp100 is involved in the maturation of melanosomes from phase I to phase II. As used herein, gp100 refers not only to the full-length canonical sequence but also to its variants and fragments. Known variants of gp100 are available at www.uniprot.org (UniProtKB-P40967; last accessed March 1, 2019).
[0078] Table 1. Amino acid sequence of gp100
[0079]
[0080] As used herein, the term "HLA" refers to human leukocyte antigens. HLA genes encode major histocompatibility complex (MHC) proteins in humans. MHC proteins are expressed on cell surfaces and participate in the activation of immune responses. HLA class I genes encode MHC class I molecules, which are expressed on cell surfaces as complexes with peptide fragments (antigens) of self or non-self proteins. T cells expressing TCR and CD3 recognize antigen-MHC class I complexes and initiate immune responses to target and destroy antigen-presenting cells displaying non-self proteins.
[0081] As used herein, "HLA class I molecule" or "HLA class I molecule" refers to the protein product of a wild-type or variant HLA class I gene encoding an MHC class I molecule. Therefore, "HLA class I molecule" and "MHC class I molecule" are used interchangeably in this article.
[0082] MHC class I molecules consist of two protein chains: an α chain and a β2-microglobulin (β2m) chain. Human β2m is encoded by the B2M gene. The amino acid sequence of β2m is described in SEQ ID NO:16 (Table 2). The α chain of MHC class I molecules is encoded by the HLA gene complex. The HLA complex is located in the 6p21.3 region on the short arm of human chromosome 6 and contains more than 220 genes with multiple functions. The HLA gene is highly variable, with more than 20,000 HLA alleles and associated alleles, including more than 15,000 HLA class I alleles known in the art, which encode thousands of HLA proteins, including more than 10,000 HLA class I proteins (see, for example, hla.alleles.org, last accessed February 27, 2019). At least three genes encoding MHC class I α chain proteins are present in the HLA complex: HLA-A, HLA-B, and HLA-C. In addition, HLA-E, HLA-F, and HLA-G encode proteins that associate with MHC class I molecules.
[0083] Table 2. Amino acid sequence of human β2m
[0084]
[0085] The term "autologous" means any material derived from the same individual as the individual into whom the material is subsequently introduced. For example, autologous T-cell therapy involves administering T cells isolated from the same individual to a subject. The term "allogeneic" means any material derived from an individual and subsequently introduced into another individual of the same species. For example, allogeneic T-cell transplantation involves administering T cells obtained from a donor other than the subject to a subject.
[0086] "Cancer" refers to a wide range of diseases characterized by the uncontrolled growth of abnormal cells in the body. Disordered cell division and growth lead to the formation of malignant tumors that invade adjacent tissues and can also metastasize to distant parts of the body via the lymphatic system or bloodstream. "Cancer" or "cancer tissue" can include tumors. Examples of cancers treatable by the methods of this invention include, but are not limited to, cancers of the immune system, including lymphoma, leukemia, and other white blood cell malignancies. In some embodiments, the method of the present invention can be used to reduce the size of tumors originating from, for example, bone cancer, kidney cancer, prostate cancer, breast cancer, colon cancer, lung cancer, cutaneous or ocular malignant melanoma, pancreatic cancer, skin cancer, head and neck cancer, cutaneous or ocular malignant melanoma, uterine cancer, ovarian cancer, rectal cancer, anal cancer, gastric cancer, testicular cancer, uterine cancer, fallopian tube cancer, endometrial cancer, cervical cancer, vaginal cancer, vulvar cancer, Hodgkin's disease, non-Hodgkin's lymphoma (NHL), primary mediastinal large B-cell lymphoma (PMBC), diffuse large B-cell lymphoma (DLBCL), follicular lymphoma (FL), transformed follicular lymphoma, splenic marginal zone lymphoma (SMZL), esophageal cancer, small bowel cancer, and endocrine system cancers. Thyroid cancer, parathyroid cancer, adrenal cancer, soft tissue sarcoma, urethral cancer, penile cancer, chronic or acute leukemia, acute myeloid leukemia (AML), chronic myeloid leukemia, acute lymphoblastic leukemia (ALL) (including non-T-cell ALL), chronic lymphocytic leukemia (CLL), childhood solid tumors, lymphocytic lymphoma, bladder cancer, kidney or ureter cancer, renal pelvis tumor, central nervous system (CNS) spurs, primary CNS lymphoma, tumor angiogenesis, spinal axis tumors, brainstem gliomas, pituitary adenomas, Kaposi's sarcoma, epidermoid carcinoma, squamous cell carcinoma, T-cell lymphoma, environmentally induced cancers (including those induced by asbestos), other B-cell malignancies, and combinations thereof. Certain cancers may be responsive to chemotherapy or radiation therapy, or the cancer may be refractory. Refractory cancers are those that are not suitable for surgical intervention and that initially do not respond to chemotherapy or radiation therapy or become unresponsive over time.
[0087] As used in this article, "antitumor effect" refers to biological effects that can exist in the following forms: reduction in tumor volume, reduction in the number of tumor cells, reduction in tumor cell proliferation, reduction in the number of metastases, increase in overall survival or progression-free survival, increase in life expectancy, or improvement in various physiological symptoms associated with tumors. Antitumor effect can also refer to the prevention of tumor development, such as through vaccines.
[0088] The term “progression-free survival” may be abbreviated as PFS, which, as used herein, refers to the time from the date of treatment to the date of disease progression or death from any cause according to the revised IWG Response Criteria for Malignant Lymphoma.
[0089] "Disease progression" or "progressive disease" may be abbreviated as PD, which, as used herein, refers to the worsening of one or more symptoms associated with a specific disease. For example, disease progression in a subject with cancer may include an increase in the number or size of one or more malignant lesions, tumor metastasis, and death.
[0090] "Duration of response" can be abbreviated as DOR, which, as used in this article, refers to the period between the date a subject first objectively responds and the date on which disease progression or death is confirmed according to the revised IWG response guidelines for malignant lymphoma.
[0091] The term "overall survival" can be abbreviated as OS, which is defined as the time from the date of treatment to the date of death.
[0092] As used herein, "cytokine" refers to a non-antibody protein released by a cell in response to contact with a specific antigen, wherein the cytokine interacts with a second cell to mediate a response in the second cell. Cytokines can be expressed endogenously by cells or administered to a subject. Cytokines can be released by immune cells, including macrophages, B cells, T cells, and mast cells, to propagate an immune response. Cytokines can induce various responses in recipient cells. Cytokines can include homeostatic cytokines, chemokines, pro-inflammatory cytokines, effectors, and acute-phase proteins. For example, homeostatic cytokines, including interleukin (IL)7 and IL-15, promote immune cell survival and proliferation, and pro-inflammatory cytokines can promote inflammatory responses. Examples of homeostatic cytokines include, but are not limited to, IL-2, IL-4, IL-5, IL-7, IL-10, IL-12p40, IL-12p70, IL-15, and interferon (IFN)γ. Examples of pro-inflammatory cytokines include, but are not limited to, IL-1a, IL-1b, IL-6, IL-13, IL-17a, tumor necrosis factor (TNF)-α, TNF-β, fibroblast growth factor (FGF)2, granulocyte-macrophage colony-stimulating factor (GM-CSF), soluble intercellular adhesion molecule-1 (sICAM-1), soluble vascular adhesion molecule-1 (sVCAM-1), vascular endothelial growth factor (VEGF), VEGF-C, VEGF-D, and placental growth factor (PLGF). Examples of effectors include, but are not limited to, granzyme A, granzyme B, soluble Fas ligand (sFasL), and perforin. Examples of acute-phase proteins include, but are not limited to, C-reactive protein (CRP) and serum amyloid A (SAA).
[0093] Chemokines are a class of cytokines that mediate cellular chemotaxis or directed movement. Examples of chemokines include, but are not limited to, IL-8, IL-16, eotaxin, eosinophil chemokine-3, macrophage-derived chemokines (MDC or CCL22), monocyte chemoattractant protein 1 (MCP-1 or CCL2), MCP-4, macrophage inflammatory protein 1α (MIP-1α, MIP-1a), MIP-1β (MIP-1b), γ-inducible protein 10 (IP-10), and thymus and activation-regulating chemokines (TARC or CCL17).
[0094] Other examples of analytes and cytokines in this invention include, but are not limited to, chemokine (CC motif) ligand (CCL)1, CCL5, monocyte-specific chemokine 3 (MCP3 or CCL7), monocyte chemoattractant protein 2 (MCP-2 or CCL8), CCL13, IL-1, IL-3, IL-9, IL-11, IL-12, IL-14, IL-17, IL-20, IL-21, granulocyte colony-stimulating factor (G-CSF), and leukemia inhibitory factor (LIF). Oncogene M (OSM), CD154, lymphotoxin (LT)β, 4-1BB ligand (4-1BBL), proliferation-inducing ligand (APRIL), CD70, CD153, CD178, glucocorticoid-induced TNFR-associated ligand (GITRL), tumor necrosis factor superfamily member 14 (TNFSF14), OX40L, TNF-associated and ApoL-associated leukocyte-expressed ligand 1 (TALL-1) or TNF-associated apoptosis-inducing ligand (TRAIL).
[0095] The “therapeutic effective amount,” “effective dose,” “effective amount,” or “therapeutic effective dose” of a drug or therapeutic agent is any amount by which a drug, when used alone or in combination with another therapeutic agent, prevents the onset of disease in a subject or promotes disease regression proven by a reduction in the severity of disease symptoms, an increase in the frequency and duration of asymptomatic periods of disease, or prevention of injury or disability caused by the suffering caused by the disease. The ability of a therapeutic agent to promote disease regression can be assessed using a variety of methods known to skilled practitioners, such as in human subjects during clinical trials, in animal model systems that predict efficacy in humans, or by assaying activity in vitro using an assay agent.
[0096] As used herein, the term "lymphocyte" includes natural killer (NK) cells, T cells, or B cells. NK cells are a class of cytotoxic / cell-toxic lymphocytes that represent a major component of the innate immune system. NK cells repel tumor cells and cells infected by viruses. They work through the process of apoptosis, or programmed cell death. They are called "natural killers" because they do not require activation to kill cells. T cells play a major role in cell-mediated immunity (not involving antibodies). The T cell receptor (TCR) distinguishes T cells from other lymphocyte types. The thymus, a specialized organ of the immune system, is primarily responsible for the maturation of T cells. There are six types of T cells: helper T cells (e.g., CD4+ cells), cytotoxic T cells (also known as TC, cytotoxic T lymphocytes, CTL, T-killer cells, cytolytic T cells, CD8+ T cells, or killer T cells), memory T cells ((i) stem cell-like memory T cells), and memory T cells ((i) stem cell-like memory T cells). SCMCells (such as naïve cells) are CD45RO-, CCR7+, CD45RA+, CD62L+ (L-selectin), CD27+, CD28+, and IL-7Rα+, but they also express large amounts of CD95, IL-2Rβ, CXCR3, and LFA-1, and exhibit many of the unique functional characteristics of memory cells; (ii) central memory T cells CM Cells express L-selectin and CCR7, secrete IL-2, but do not secrete IFNγ or IL-4, and (iii) however, effector memory T EM B cells do not express L-selectin or CCR7, but produce effector cytokines such as IFNγ and IL-4, regulatory T cells (Tregs, suppressor T cells, or CD4+CD25+ regulatory T cells), natural killer T cells (NKTs), and γδ T cells. On the other hand, B cells play a major role in humoral immunity (involving antibodies). B cells produce antibodies and antigens and act as antigen-presenting cells (APCs), and become memory B cells after activation through antigen-antigen interactions. In mammals, immature B cells form in the bone marrow, from which the name B cell originates.
[0097] The terms "genetic engineering" or "engineering" refer to methods of modifying the genome of a cell, including but not limited to deleting coding or non-coding regions or portions thereof, or inserting coding regions or portions thereof. In some embodiments, the modified cells are lymphocytes, such as T cells, or modified cells expressing CD3, which may be obtained from a patient or donor. Cells may be modified to express exogenous constructs incorporated into the cell's genome, such as the T cell receptor (TCR) disclosed herein. In some embodiments, cells are modified to express CD3.
[0098] "Immune response" refers to the action of cells of the immune system (such as T lymphocytes, B lymphocytes, natural killer (NK) cells, macrophages, eosinophils, mast cells, dendritic cells, and neutrophils) and soluble macromolecules (including antibodies, cytokines, and complement) produced by any of these cells or the liver, which cause selective targeting, binding, damage, destruction, and / or elimination of invading pathogens, pathogen-infected cells or tissues, cancer cells or other abnormal cells, or normal human cells or tissues in cases of autoimmunity or pathological inflammation in vertebrates.
[0099] The term "immunotherapy" refers to the treatment of a subject who has a disease or is at risk of contracting or relapsing from a disease by means of methods including inducing, enhancing, suppressing, or otherwise altering the immune response. Examples of immunotherapy include, but are not limited to, T-cell therapy. T-cell therapy may include adoptive T-cell therapy, tumor-infiltrating lymphocyte (TIL) immunotherapy, autologous cell therapy, engineered autologous cell therapy (eACT), and allogeneic T-cell transplantation.
[0100] Cells used in the immunotherapy described herein may be derived from any source known in the art. For example, T cells may be distinguishable from hematopoietic stem cell populations in vitro, or T cells may be obtained from the subject. T cells may be obtained from, for example, peripheral blood mononuclear cells, bone marrow, lymph node tissue, umbilical cord blood, thymus tissue, tissue from the site of infection, ascites, pleural effusion, spleen tissue, and tumors. Furthermore, T cells may be derived from one or more T cell lines available in the art. T cells may also be obtained from sources known to those skilled in the art, such as FICOLL. TM Any number of techniques for isolating and / or apheresis of blood components can be used to collect a unit of blood from a subject. Other methods for isolating T cells for T-cell therapy are disclosed in U.S. Patent Publication No. 2013 / 0287748, which is incorporated herein by reference in its entirety. Immunotherapy may also include administering modified cells to a subject, wherein the modified cells express CD3 and the TCR disclosed herein. In some embodiments, the modified cells are not T cells.
[0101] As used herein, “patient” includes anyone with cancer (such as lymphoma or leukemia). The terms “subject” and “patient” are used interchangeably in this document.
[0102] The terms “peptide,” “polypeptide,” and “protein” are used interchangeably and refer to compounds containing amino acid residues covalently linked by peptide bonds. A protein or peptide must contain at least two amino acids, and there is no limit to the maximum number of amino acids in a sequence that may contain a protein or peptide. A polypeptide includes any peptide or protein containing two or more amino acids linked together by peptide bonds. As used herein, the term refers to a short chain, which is also commonly referred to in the art, for example, as a peptide, oligopeptide, and oligomer; and to a longer chain, which is commonly referred to in the art, as a protein, of which there are many types. “Polypeptide” includes, for example, biologically active fragments, substantially homologous polypeptides, oligopeptides, homodimers, heterodimers, polypeptide variants, modified polypeptides, derivatives, analogs, fusion proteins, etc. Polypeptides include natural peptides, recombinant peptides, synthetic peptides, or combinations thereof.
[0103] As used herein, “stimulus” refers to a major response induced by the binding of a stimulating molecule to its homologous ligand, wherein the binding mediates a signal transduction event. A “stimulating molecule” is a molecule on a T cell that specifically binds to a homologous stimulating ligand present on an antigen-presenting cell, such as the T cell receptor (TCR) / CD3 complex. A “stimulating ligand” is a ligand present on an antigen-presenting cell (e.g., aAPC, dendritic cells, B cells, and similar cells) that can specifically bind to a stimulating molecule on a T cell, thereby mediating a major response induced by the T cell, including but not limited to activation, initiation of an immune response, proliferation, and similar reactions. Stimulating ligands include, but are not limited to, peptide-loaded MHC class I molecules, anti-CD3 antibodies, hyperagonist anti-CD28 antibodies, and hyperagonist anti-CD2 antibodies.
[0104] The terms “treatment” and “pretreatment” are used interchangeably herein and refer to preparation for a patient requiring T-cell therapy for an appropriate situation. Treatment as used herein includes, but is not limited to, reducing the number of endogenous lymphocytes prior to T-cell therapy, removing the cytokine sink, increasing serum levels of one or more homeostatic cytokines or pro-inflammatory factors, enhancing the effector function of T cells administered after treatment, enhancing antigen-presenting cell activation and / or availability, or any combination thereof. In one embodiment, “treatment” includes increasing serum levels of one or more cytokines, such as interleukin-7 (IL-7), interleukin-15 (IL-15), interleukin-10 (IL-10), interleukin-5 (IL-5), γ-inducible protein 10 (IP-10), interleukin-8 (IL-8), monocyte chemoattractant protein 1 (MCP-1), placental growth factor (PLGF), C-reactive protein (CRP), soluble intercellular adhesion molecule-1 (sICAM-1), soluble vascular adhesion molecule-1 (sVCAM-1), or any combination thereof. In another embodiment, "treatment" includes increasing serum levels of IL-7, IL-15, IP-10, MCP-1, PLGF, CRP, or any combination thereof.
[0105] Treatment / treating of a subject refers to any type of intervention or treatment administered to a subject or to a subject with the aim of reversing, alleviating, improving, suppressing, slowing, or preventing the onset, progression, development, severity, or recurrence of symptoms, complications, or lesions or biochemical markers associated with the disease. In one implementation, treatment / treating includes partial remission. In another implementation, treatment / treating includes complete remission.
[0106] The use of substitution (e.g., "or") should be understood to mean one, both, or any combination of the substitutes. As used herein, the indefinite article "a / kind" should be understood to mean "one / kind or more / kinds" of any of the described or enumerated components.
[0107] The terms “about” or “substantially comprise” refer to a specific value or composition that, as determined by a person skilled in the art, is within an acceptable margin of error, which will depend in part on how the value or composition is measured or determined, i.e., the limitations of the measuring system. For example, “about” or “substantially comprise” may mean within one or more standard deviations according to convention in the art. Alternatively, “about” or “substantially comprise” may mean a range of up to 10% (i.e., ±10%). For example, about 3 mg may include any number between 2.7 mg and 3.3 mg (for 10%). Furthermore, specifically in relation to biological systems or methods, the term may mean up to an order of magnitude or up to five times the value. When specific values or compositions are provided in this application and claims, unless otherwise stated, the meaning of “about” or “substantially comprise” should be assumed to be within an acceptable margin of error for said specific value or composition.
[0108] Unless otherwise stated, as described herein, any concentration range, percentage range, ratio range, or integer range shall be understood to include any integer value within the range and (where appropriate) its fraction (such as tenths and percentes of an integer).
[0109] The various aspects of the invention are described in more detail in the following sections.
[0110] II. Compositions disclosed herein
[0111] This disclosure relates to a T-cell receptor (TCR) or its antigen-binding portion that specifically binds to an epitope on gp100, a nucleic acid molecule encoding said TCR, and a cell containing said TCR or said nucleic acid molecule. Some aspects of the invention relate to a method of treating cancer in a subject of need, the method comprising administering to the subject cells containing the TCR described herein. Other aspects of this disclosure relate to an epitope of gp100 that binds to a TCR, and an HLA class I molecule complexed with a peptide containing the gp100 epitope.
[0112] T-cell receptors, or TCRs, are molecules present on the surface of T cells or T lymphocytes that are responsible for recognizing fragments of antigens as peptides that bind to the major histocompatibility complex (MHC) molecule. The binding between TCRs and antigenic peptides has a relatively low affinity and is degenerate: in other words, many TCRs recognize the same antigenic peptides and many antigenic peptides are recognized by the same TCRs.
[0113] The TCR consists of two distinct protein chains (in other words, it is a heterodimer). In humans, in 95% of T cells, the TCR is composed of an α (α) chain and a β (β) chain (encoded by TRA and TRB, respectively), but in 5% of T cells, the TCR is composed of a γ and a δ (γ / δ) chain (encoded by TRG and TRD, respectively). This ratio varies during ontogeny and in disease states (such as leukemia). It also differs between species. Orthologs of four loci have been located in various species. Each locus can produce a variety of polypeptides with constant and variable regions.
[0114] When the TCR binds to the antigenic peptide and MHC (peptide / MHC), T lymphocytes are activated through signal transduction, which is a series of biochemical events mediated by related enzymes, co-receptors, specialized adaptor molecules, and activated or released transcription factors.
[0115] II.A. Nucleic acid molecules
[0116] Certain aspects of this disclosure relate to nucleic acid molecules comprising (i) a first nucleotide sequence encoding a recombinant TCR or its antigen-binding portion (“anti-gp100 TCR”) that specifically binds to human gp100; and (ii) a second nucleotide sequence, wherein the second nucleotide sequence or a polypeptide encoded by the second nucleotide sequence inhibits the expression of an endogenous TCR. In some embodiments, the second nucleotide sequence is a non-naturally occurring sequence. In other embodiments, the second nucleotide sequence is synthetic. In other embodiments, the second nucleotide sequence comprises a sequence of nucleotides targeting and encoding an endogenous TCR. In some embodiments, the anti-gp100 TCR cross-competitively binds to human gp100 with a reference TCR. In some embodiments, the anti-gp100 TCR binds to the same or overlapping epitopes of human gp100 as the reference TCR.
[0117] In some embodiments, the reference TCR comprises an α chain and a β chain; wherein the α chain comprises complementarity-determining regions 1 (CDR1), CDR2, and CDR3; wherein the β chain comprises CDR1, CDR2, and CDR3; and wherein the reference TCR comprises the α chain CDR3 listed in SEQ ID NO:7 and the β chain CDR3 listed in SEQ ID NO:10. In some embodiments, the α chain CDR1, CDR2, and CDR3 sequences are present in the amino acid sequence listed in SEQ ID NO:1, and the reference TCR comprises the β chain CDR1, CDR2, and CDR3 sequences present in the amino acid sequence listed in SEQ ID NO:2. In some embodiments, the reference TCR comprises an α chain and a β chain, wherein the α chain comprises the amino acid sequence listed in SEQ ID NO:1 and the β chain comprises the amino acid sequence listed in SEQ ID NO:2.
[0118] Table 3. TCR sequences of α-chain and β-chain
[0119]
[0120]
[0121]
[0122] II.A.1. TCR encoded by the first nucleotide sequence
[0123] This disclosure relates to a TCR encoded by a first nucleotide sequence described herein. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α chain and a β chain, wherein the α chain comprises variable domains containing α chain CDR1, α chain CDR2, and α chain CDR3; and wherein the β chain comprises variable domains containing β chain CDR1, β chain CDR2, and β chain CDR3. In some embodiments, the anti-gp100 TCR comprises an α chain CDR3 containing the amino acid sequence listed in SEQ ID NO:7 (CAANSGNTPLVF). In some embodiments, the anti-gp100 TCR comprises a β chain CDR3 containing the amino acid sequence listed in SEQ ID NO:10 (CASSLMGGGNTIYF). In some embodiments, the non-CDR regions in the α chain and / or β chain are further modified, for example, by substitution or mutation of one, two, three, four, five, or six amino acids, such that the α chain and / or β chain are not naturally occurring. In some implementations, substitution or mutation can improve the TCR described herein in various ways, such as binding affinity, binding specificity, stability, viscosity, or any combination thereof.
[0124] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain CDR1, wherein the α-chain CDR1 of the anti-gp100 TCR comprises the amino acid sequence listed in SEQ ID NO:5 (NSMFDY). In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises a β-chain CDR1, wherein the β-chain CDR1 of the anti-gp100 TCR comprises the amino acid sequence listed in SEQ ID NO:8 (ISSIKDK).
[0125] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain CDR2, wherein the α-chain CDR2 of the anti-gp100 TCR comprises the amino acid sequence listed in SEQ ID NO:6 (SNHLY). In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises a β-chain CDR2, wherein the β-chain CDR2 of the anti-gp100 TCR comprises the amino acid sequence listed in SEQ ID NO:9 (FYNNEI).
[0126] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain variable domain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the α-chain amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain variable domain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the α-chain amino acid sequence listed in SEQ ID NO:1, wherein the anti-gp100 TCR comprises an α-chain CDR3 containing the amino acid sequence listed in SEQ ID NO:7. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence includes the α-chain variable domain present in the α-chain amino acid sequence listed in SEQ ID NO:1.
[0127] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises a β-chain variable domain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the β-chain amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises a β-chain variable domain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the β-chain amino acid sequence listed in SEQ ID NO:2, wherein the anti-gp100 TCR comprises a β-chain CDR3 containing the amino acid sequence listed in SEQ ID NO:10. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence includes a β-chain variable domain present in the amino acid sequence listed in SEQ ID NO:2.
[0128] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide further comprises an α-chain constant region, a β-chain constant region, or both an α-chain constant region and a β-chain constant region. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain constant region having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the constant region of the α-chain amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain constant region having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the constant region of the α-chain amino acid sequence listed in SEQ ID NO:1, wherein the anti-gp100 TCR comprises an α-chain CDR3 containing the amino acid sequence as listed in SEQ ID NO:7. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain constant region present in the α-chain amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence further comprises an α-chain constant region different from an endogenous (e.g., naturally occurring) constant region of the α-chain. In some embodiments, the α-chain constant region comprises an amino acid sequence comprising at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the α-chain amino acid sequence listed in SEQ ID NO:1.
[0129] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises a β-chain constant region having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the constant region of the β-chain amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises a β-chain constant region having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the constant region of the β-chain amino acid sequence listed in SEQ ID NO:2, wherein the anti-gp100 TCR comprises a β-chain CDR3 containing the amino acid sequence listed in SEQ ID NO:10. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises a β-chain constant region present in the amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide also comprises a β-constant region different from an endogenous (e.g., naturally occurring) constant region of the β-chain. In some embodiments, the β-chain constant region comprises an amino acid sequence comprising at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the constant region of the β-chain amino acid sequence listed in SEQ ID NO:2.
[0130] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the α-chain amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the α-chain amino acid sequence listed in SEQ ID NO:1, wherein the anti-gp100 TCR comprises an α-chain CDR3 containing the amino acid sequence listed in SEQ ID NO:7. In some embodiments, the anti-gp100TCR encoded by the first nucleotide sequence comprises an α-chain containing the amino acid sequence listed in SEQ ID NO:1.
[0131] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises a β-chain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the β-chain amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises a β-chain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the β-chain amino acid sequence listed in SEQ ID NO:2, wherein the anti-gp100 TCR comprises a β-chain CDR3 containing the amino acid sequence listed in SEQ ID NO:10. In some embodiments, the anti-gp100TCR encoded by the first nucleotide sequence comprises a β chain containing the amino acid sequence listed in SEQ ID NO:2.
[0132] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence comprises an α-chain constant region, a β-chain constant region, or both; and wherein the α-chain constant region, the β-chain constant region, or both comprise an amino acid sequence having at least one, at least two, at least three, at least four, or at least five substituted amino acid sequences relative to the endogenous TCR within the target sequence.
[0133] II.A.2. Epitope
[0134] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide sequence binds to the same epitope as the reference TCR. In some embodiments, the anti-gp100 TCR binds to an epitope of gp100 comprising the amino acid sequence listed in SEQ ID NO:13 (RYGSFSVTL). In some embodiments, the anti-gp100 TCR binds to an epitope of gp100 consisting of an amino acid sequence as listed in SEQ ID NO:13. In some embodiments, the epitope consists of amino acid residues 479-487 (SEQ ID NO:52) of gp100, for example, “gp100”. 479-487 ".
[0135] In some implementations, the epitope is complexed with an HLA class I molecule. The human leukocyte antigen (HLA) system (the major histocompatibility complex [MHC] in humans) is an important part of the immune system and is controlled by genes located on chromosome 6. It encodes cell surface molecules that are specialized to present antigenic peptides to T cell receptors (TCRs) on T cells. (See also Overview of the Immune System.) Antigen-presenting MHC molecules are divided into two main classes: class I MHC molecules and class II MHC molecules.
[0136] Class I MHC molecules exist as transmembrane glycoproteins on the surface of all nucleated cells. A complete class I molecule consists of an α-heavy chain bound to a β-2 microglobulin molecule. The heavy chain comprises two peptide-binding domains, an Ig-like domain, and a transmembrane region with a cytoplasmic tail. The heavy chain of class I molecules is encoded by genes at the HLA-A, HLA-B, and HLA-C loci. T cells expressing CD8 molecules respond to class I MHC molecules. These lymphocytes often possess cytotoxic functions, thus requiring the ability to recognize any infected cells. Because every nucleated cell expresses class I MHC molecules, all infected cells can act as antigen-presenting cells for CD8 T cells (CD8 binds to the non-polymorphic portion of the class I heavy chain). Some class I MHC genes encode non-classical MHC molecules, such as HLA-G (which plays a role in protecting the fetus from maternal immune responses) and HLA-E (which presents peptides to certain receptors on natural killer (NK) cells).
[0137] In some embodiments, HLA class 1 molecules are selected from HLA-A, HLA-B, and HLA-C alleles. In some embodiments, HLA class 1 molecules are selected from HLA-E, HLA-F, and HLA-G alleles. In some embodiments, HLA class 1 molecules are HLA-A alleles. In some embodiments, HLA class 1 molecules are HLA-B alleles. In some embodiments, HLA class 1 molecules are HLA-C alleles.
[0138] Many HLA-A, HLA-B, and HLA-C alleles are known in the art, and any of the known alleles may be used in this disclosure. An updated list of HLA alleles is available at hla.alleles.org / (last accessed February 27, 2019). In some embodiments, the HLA class 1 molecule is selected from the following HLA-C alleles: HLA-C*01, HLA-C*02, HLA-C*03, HLA-C*04, HLA-C*05, HLA-C*06, HLA-C*07, HLA-C*08, HLA-C*12, HLA-C*14, HLA-C*15, HLA-C*16, HLA-C*17, and HLA-C*18. In some embodiments, the HLA-C allele is the HLA-C*07:01 allele. In some embodiments, the HLA-C allele is the HLA-C*07:02 allele. In some embodiments, the HLA-C allele is the HLA-C*07:03 allele. In some embodiments, the HLA-C allele is the HLA-C*07:04 allele. In some embodiments, the HLA-C allele is the HLA-C*07:05 allele. In some embodiments, the HLA-C allele is the HLA-C*07:06 allele. In some embodiments, the HLA-C allele is the HLA-C*07:07 allele. In some embodiments, the HLA-C allele is the HLA-C*07:08 allele.
[0139] In the updated version, HLA 1 is up to date with Facebook HLA-C*07:01:01:01、HLA-C*07:01:01:02、HLA-C*07:01:01:03、HLA-C*07:01:01:04、HLA- C*07:01:01:05、HLA-C*07:01:01:06、HLA-C*07:01:01:07、HLA-C*07:01:01:08、HLA-C*07:01:01: 09、HLA-C*07:01:01:10、HLA-C*07:01:01:11、HLA-C*07:01:01:12、HLA-C*07:01:01:13、HLA-C*07 :01:01:14、HLA-C*07:01:01:15、HLA-C*07:01:01:16、HLA-C*07:01:01:17、HLA-C*07:01:01:18、HL AC*07:01:01:19、HLA-C*07:01:01:20、HLA-C*07:01:01:21、HLA-C *07:01:01:22、HLA-C*07:01:01:23、HLA-C*07:01:01:24、HLA-C*0 7:01:01:25、HLA-C*07:01:01:26、HLA-C*07:01:01:27、HLA-C*07: 01:01:28、HLA-C*07:01:02、HLA-C*07:01:03、HLA-C*07:01:04、HL AC*07:01:05、HLA-C*07:01:06、HLA-C*07:01:07、HLA-C*07:01:08、HLA-C*07:01:09、HLA-C*07:0 1:10、HLA-C*07:01:11、HLA-C*07:01:12、HLA-C*07:01:13、HLA-C*07:01:14、HLA-C*07:01:15、HL AC*07:01:16、HLA-C*07:01:17、HLA-C*07:01:18、HLA-C*07:01:19、HLA-C*07:01:20、HLA-C*07:0 1:21、HLA-C*07:01:22、HLA-C*07:01:23、HLA-C*07:01:24、HLA-C*07:01:25、HLA-C*07:01:26、HL AC*07:01:27、HLA-C*07:01:28、HLA-C*07:01:29、HLA-C*07:01:30、HLA-C*07:01:31、HLA-C*07:01:32、HLA-C*07:01:33、HLA-C*07:01:34、HLA-C*07:01:35、HLA-C*07:01:36、HLA-C*07:01:37、HL AC*07:01:38、HLA-C*07:01:39、HLA-C*07:01:40、HLA-C*07:01:41、HLA-C*07:01:42、HLA-C*07:01:43、HLA-C*07:01:44、HLA-C*07:01:45、HLA-C*07:01:46、HLA-C*07:01:47、HLA-C*07:01:48、HL A-C*07:01:49、HLA-C*07:01:50、HLA-C*07:01:51、HLA-C*07:01:52、HLA-C*07:01:53、HLA-C*07:01:54、HLA-C*07:01:55、HLA-C*07:01:56、HLA-C*07:01:57、HLA-C*07:01:58、HLA-C*07:01:59、HL AC*07:01:60、HLA-C*07:01:61、HLA-C*07:01:62、HLA-C*07:01:63、HLA-C*07:01:64、HLA-C*07:01:65、HLA-C*07:01:66、HLA-C*07:01:67、HLA-C*07:01:68、HLA-C*07:01:69、HLA-C*07:01:70、HL AC*07:01:71、HLA-C*07:01:72、HLA-C*07:01:73、HLA-C*07:01:74、HLA-C*07:01:75、HLA-C*07:01:76、HLA-C*07:01:77、HLA-C*07:02:01:01、HLA-C*07:02:01:02、HLA-C*07:02:01:03、HLA-C*07:02:01:04、HLA-C*07:02:01:05、HLA- C*07:02:01:06、HLA-C*07:02:01:07、HLA-C*07:02:01:08、HLA-C*07:02:01:09、HLA-C*07:02:01:10、HLA-C*07:02:01:11、HLA-C*07:02:01:12、HLA-C*07:02:01:13、HLA-C*07:02:01:14、HLA-C*07:02:01:15、HLA-C*07:02:01:16、HL AC*07:02:01:17、HLA-C*07:02:01:18、HLA-C*07:02:01:19、HLA-C*07:02:01:20、HLA-C*07:02:01:21、HLA-C*07:02:01:2 2、HLA-C*07:02:01:23、HLA-C*07:02:01:24、HLA-C*07:02:01:25、HLA-C*07:02:01:26、HLA-C*07:02:01: 27、HLA-C*07:02:01:28、HLA-C*07:02:01:29、HLA-C*07:02:01:30、HLA-C*07:02:01:31、HLA-C*07:02:0 1:32、HLA-C*07:02:01:33、HLA-C*07:02:01:35 HLA-C*07:02:01:36 I'm still here 1She was also involved in the HLA-C gene:HLA-C*07:02:0 、HLA-C*07:02:03、HLA-C*07:02:04、HLA-C*07: 02:05、HLA-C*07:02:06、HLA-C*07:02:07、HLA-C*07:02:08、HLA-C*07:02:09、HLA-C*07:02:10 、HLA-C*07:02:100、HLA-C*07:02:101、HLA-C*07:02:102、HLA-C*07:02:103、HLA-C*07:02:10 4:01、HLA-C*07:02:104:02、HLA-C*07:02:11、HLA-C*07:02:12、HLA-C*07:02:13、HLA-C*07:02 :14、HLA-C*07:02:15、HLA-C*07:02:16、HLA-C*07:02:17、HLA-C*07:02:18、HLA-C*07:02:19、 HLA-C*07:02:20、HLA-C*07:02:21、HLA-C*07:02:22、HLA-C*07:02:23、HLA-C*07:02:24、HLA-C *07:02:25、HLA-C*07:02:26、HLA-C*07:02:27、HLA-C*07:02:28、HLA-C*07:02:29、HLA-C*07:0 2:30、HLA-C*07:02:31、HLA-C*07:02:32、HLA-C*07:02:33、HLA-C*07:02:34、HLA-C*07:02:35、HLA-C*07:02:36、HLA-C*07:02:37、HLA-C*07:02:38、HLA-C*07:02:39、HLA-C*07:02:40、HLA-C*07:02:41、HLA-C*07:02:42、HLA-C*07:02:43、HLA-C*07:02:44、HLA-C*07:02:45、HLA-C*07:02:46、HLA-C*07:02:47、HLA-C*07:02:48、HLA-C*07:02:49、HLA-C*07:02:50、HLA-C*07:02:51、HLA-C*0 7:02:52, HLA-C*07:02:53, HLA-C*07:02:54, HLA-C*07:02:55, HLA-C*07:02:56, HLA-C*07:02:57, HLA-C*07:02:58, HLA-C*07:02:59, HLA-C*07:02:60, HLA-C*07:02:61, HLA-C*07:02:62, HLA-C*07:02:63, HLA-C*07:02:64, HLA-C*07:02:65, HLA-C*07:02:66, HLA-C*07:02:67, HLA-C*07:02:68, HLA-C*07:02:69、HLA-C*07:02:70、HLA-C*07:02:71、HLA-C*07:02:72、HLA-C*07:02:73、HLA-C*07:02:74、HLA-C*07:02:75、HLA-C*07:02:76、HLA-C*07:02:77、HLA-C*07:02:78、HLA-C*07:02:79、HLA-C*07:02:80、HLA-C*07:02:81、HLA-C*07:02:82、HLA-C*07:02:83、HLA-C*07:02:84、HLA-C*0 7:02:85, HLA-C*07:02:86, HLA-C*07:02:87, HLA-C*07:02:88, HLA-C*07:02:89, HLA-C*07:02:90, HLA-C*07:02:91, HLA-C*07:02:92, HLA-C*07:02:93, HLA-C*07:02:94, HLA-C*07:02:95, HLA-C*07:02:96, HLA-C*07:02:97, HLA-C*07:02:98, HLA-C*07:02:99, HLA-C*07:03, HLA-C*07:04:01:01,HLA-C*07:04:01:02、HLA-C*07:04:01:03、HLA-C*07:04:01:04、HLA-C*07:04:02:01、HLA-C*07:04:02:02、HLA-C*07:04:03、HLA-C*07:04:04、HLA-C*07:04:05、HL AC*07:04:06、HLA-C*07:04:07、HLA-C*07:04:08、HLA-C*07:04:09、HLA-C*07:04:10、HLA-C*07:04:11、HLA-C*07:04:12、HLA-C*07:04:13、HLA-C*07:04:14、HLA-C*07:04:15、HLA-C*07:04:16、HL AC*07:04:17、HLA-C*07:04:18、HLA-C*07:05、HLA-C*07:06:01:01、HLA-C*07:06:01:02、HLA-C*07:06:02、HLA-C*07:07、HLA-C*07:08、HLA-C*07:09、HLA-C*07:10、HLA-C*07:100、HLA-C*07:101、HLA-C*07: 102、HLA-C*07:103、HLA-C*07:104、HLA-C*07:105、HLA-C*07:106、HLA-C*07:107、HLA-C*07:108:01、HLA-C*07:108:02、HLA-C*07:109:01、HLA-C*07:109:02、HLA-C*07:11、HLA-C*07:110、HLA-C*07:111、HLA -C*07:112、HLA-C*07:113、HLA-C*07:114、HLA-C*07:115、HLA-C*07:116、HLA-C*07:117、HLA-C*07:118、HLA-C*07:119、HLA-C*07:12、HLA-C*07:120、HLA-C*07:121、HLA-C*07:122、HLA-C*07:123、HLA-C*07: 124、HLA-C*07:125、HLA-C*07:126、HLA-C*07:127:01、HLA-C*07:127:02、HLA-C*07:128、HLA-C*07:129、HLA-C*07:13、HLA-C*07:130、HLA-C*07:131:01、HLA-C*07:131:02、HLA-C*07:132、HLA-C*07:133:01、HLA-C*07:133:02、HLA-C*07:134、HLA-C*07:135、HLA-C*07:136、HL AC*07:137:01, HLA-C*07:137:02, HLA-C*07:138, HLA-C*07:139, HLA-C*07:14, HLA-C*07:140, HLA-C*07:141:01, HLA-C*07:141:02, HLA-C*07:142, HLA-C*07:143, HLA-C*07:144, HLA-C*07:145, HLA-C*07:146, HLA-C*07:147, HLA-C*07:148, HLA-C*07:149, HLA-C*07:15, HLA-C *07:150, HLA-C*07:151, HLA-C*07:152, HLA-C*07:153, HLA-C*07:154, HLA-C*07:155, HLA-C*07:156, HLA-C*07:157, HLA-C*07:158, HLA-C*07:159, HLA-C*07:16, HLA-C*07:160, HLA-C*07:161, HLA-C*07:162, HLA-C*07:163, HLA-C*07:164, HLA-C*07:165, HLA-C*07:166, HLA-C* 07:167、HLA-C*07:168、HLA-C*07:169、HLA-C*07:170、HLA-C*07:171、HLA-C*07:172:01、HLA-C*07:172:02、HLA-C*07:173、HLA-C*07:174、HLA-C*07:175、HLA-C*07:176、HLA-C*07:177、HLA-C*07:178、HLA-C*07:179、HLA-C*07:17:01、HLA-C*07:17:02、HLA-C*07:17:03、HLA-C*0 7:17:04, HLA-C*07:180, HLA-C*07:181, HLA-C*07:182, HLA-C*07:183, HLA-C*07:184, HLA-C*07:185, HLA-C*07:186, HLA-C*07:187, HLA-C*07:188, HLA-C*07:189, HLA-C*07:18:01:01, HLA-C*07:18:01:02, HLA-C*07:18:01:03, HLA-C*07:18:02, HLA-C*07:18:03, HLA-C*07:19,HLA-C*07:190, HLA-C*07:191, HLA-C*07:192, HLA-C*07:193, HLA-C*07:194, HLA-C*07:195, HLA-C*07:196, HLA-C*07:197, HLA-C*07:198, HLA-C*07:199:01, HLA-C*07:199:02, HLA-C*07:20, HLA-C*07:200, HLA-C*07:201, HLA-C*07:202, HLA-C*07:203, HLA-C*07:204:01, HLA-C*07:204:02, HLA-C *07:205, HLA-C*07:206, HLA-C*07:207, HLA-C*07:208, HLA-C*07:209, HLA-C*07:21, HLA-C*07:210, HLA-C*07:211, HLA-C*07:212, HLA-C*07:213, HLA-C*07:214, HLA-C*07:215, HLA-C*07:216, HLA-C*07:217, HLA-C*07:218, HLA-C*07:219, HLA-C*07:22, HLA-C*07:220, HLA-C*07:221, HLA-C*07:2 22、HLA-C*07:223、HLA-C*07:224、HLA-C*07:225、HLA-C*07:226、HLA-C*07:227、HLA-C*07:228、HLA-C*07:229、HLA-C*07:23、HLA-C*07:230、HLA-C*07:231、HLA-C*07:232、HLA-C*07:233、HLA-C*07:234、HLA-C*07:235、HLA-C*07:236、HLA-C*07:237、HLA-C*07:238、HLA-C*07:239、HLA-C*07:24、HL A-C*07:240, HLA-C*07:241, HLA-C*07:242, HLA-C*07:243, HLA-C*07:244, HLA-C*07:245, HLA-C*07:246:01, HLA-C*07:246:02, HLA-C*07:247, HLA-C*07:248, HLA-C*07:249, HLA-C*07:25, HLA-C*07:250, HLA-C*07:251, HLA-C*07:252, HLA-C*07:253, HLA-C*07:254, HLA-C*07:255, HLA-C*07:256,HLA-C*07:257:01, HLA-C*07:257:02, HLA-C*07:257:03, HLA-C*07:257:04, HLA-C*07:258, HLA-C*07:259, HLA-C*07:260:01, HLA-C*07:260:02, HLA-C*07:261, HLA-C*07:262, HLA-C*07:263, HLA-C*07:264, HLA-C*07:265, HLA-C*07:266, HLA-C*07:267, HLA-C*07:268, HLA-C*07:269, HLA-C*07:26 :01、HLA-C*07:26:02、HLA-C*07:26:03、HLA-C*07:270、HLA-C*07:271、HLA-C*07:272、HLA-C*07:273、HLA-C*07:274、HLA-C*07:275、HLA-C*07:276、HLA-C*07:277、HLA-C*07:278、HLA-C*07:279、HLA-C*07:27:01、HLA-C*07:27:02、HLA-C*07:28、HLA-C*07:280、HLA-C*07:281、HLA-C*07:282、HLA-C *07:283, HLA-C*07:284, HLA-C*07:285, HLA-C*07:286, HLA-C*07:287, HLA-C*07:288, HLA-C*07:289, HLA-C*07:290, HLA-C*07:291, HLA-C*07:292, HLA-C*07:293, HLA-C*07:294, HLA-C*07:296, HLA-C*07:297, HLA-C*07:298, HLA-C*07:299, HLA-C*07:29:01, HLA-C*07:29:02, HLA-C*07:30, HLA-C *07:300, HLA-C*07:301, HLA-C*07:302, HLA-C*07:303, HLA-C*07:304, HLA-C*07:305, HLA-C*07:306, HLA-C*07:307, HLA-C*07:308, HLA-C*07:309, HLA-C*07:310, HLA-C*07:311, HLA-C*07:312, HLA-C*07:313, HLA-C*07:314:01, HLA-C*07:314:02, HLA-C*07:314:03, HLA-C*07:315, HLA-C*07:316,HLA-C*07:317, HLA-C*07:318, HLA-C*07:319, HLA-C*07:31:01, HLA-C*07:31:02, HLA-C*07:320, HLA-C*07:321, HLA-C*07:322, HLA-C*07:323, HLA-C*07:324, HLA-C*07:325, HLA-C*07:326, HLA-C*07:327 ,HLA-C*07:328,HLA-C*07:329,HLA-C*07:32,HLA-C*07:330:01,HLA-C*07:330:02,HLA-C*07:331,HLA-C*07:332,HLA-C*07:333,HLA-C*07:334,HLA-C*07:335,HLA-C*07:336,HLA-C*07:337,HLA-C*07:3 38、HLA-C*07:339、HLA-C*07:33、HLA-C*07:340、HLA-C*07:341:01、HLA-C*07:341:02、HLA-C*07:342、HLA-C*07:343:01:01、HLA-C*07:343:01:02、HLA-C*07:344、HLA-C*07:345、HLA-C*07:346、HLA-C*07: 347、HLA-C*07:348、HLA-C*07:349、HLA-C*07:35、HLA-C*07:350、HLA-C*07:351、HLA-C*07:352、HLA-C*07:353、HLA-C*07:354、HLA-C*07:355、HLA-C*07:356、HLA-C*07:357、HLA-C*07:358、HLA-C*07:359、H LA-C*07:36、HLA-C*07:360、HLA-C*07:361、HLA-C*07:362、HL AC*07:363、HLA-C*07:364、HLA-C*07:365、HLA-C*07:366、HL AC*07:367、HLA-C*07:368:01、HLA-C*07:368:02、HLA-C*07:369、HLA-C*07:37、HLA-C*07:370、HLA-C*07:371、HLA-C*07:372、H LA-C*07:373、HLA-C*07:374、HLA-C*07:375、HLA-C*07:376、HL AC*07:377、HLA-C*07:378、HLA-C*07:379、HLA-C*07:380、HL AC*07:381、HLA-C*07:382、HLA-C*07:383、HLA-C*07:384、HL AC*07:385、HLA-C*07:386、HLA-C*07:387、HLA-C*07:388、HL AC*07:389、HLA-C*07:38:01、HLA-C*07:38:02、HLA-C*07:39、H LA-C*07:390、HLA-C*07:391、HLA-C*07:392、HLA-C*07:393、HL AC*07:394、HLA-C*07:395、HLA-C*07:396、HLA-C*07:397、HL AC*07:398, HLA-C*07:399, HLA-C*07:40, HLA-C*07:400, HLA-C*07:401, HLA-C*07:402, HLA-C*07:403, HLA-C*07:404, HLA-C*07:405, HLA-C*07:406, HLA-C*07:407, HLA-C*07:408, HLA-C*07:409, HLA-C*07:41, HLA-C*07:410, HLA-C*07:411, HLA-C*07:412, HLA-C*07:413, HLA-C*07: 414、HLA-C*07:415、HLA-C*07:416、HLA-C*07:417、HLA-C*07:418、HLA-C*07:419、HLA-C*07:42、HLA-C*07:420、HLA-C*07:421、HLA-C*07:422、HLA-C*07:423、HLA-C*07:424、HLA-C*07:425、HLA-C*07:426、HLA-C*07:427、HLA-C*07:428、HLA-C*07:429、HLA-C*07:430、HLA-C*07:431、H LA-C*07:432、HLA-C*07:433、HLA-C*07:434、HLA-C*07:435、HL AC*07:436、HLA-C*07:437、HLA-C*07:438、HLA-C*07:439、HL AC*07:43:01、HLA-C*07:43:02、HLA-C*07:44、HLA-C*07:440、H LA-C*07:441:01、HLA-C*07:441:02、HLA-C*07:442、HLA-C*07:443、HLA-C*07:444、HLA-C*07:445, HLA-C*07:446, HLA-C*07:447, HLA-C*07:448, HLA-C*07:449, HLA-C*07:45, HLA-C*07:450, HLA-C*07:451, HLA-C*07:452, HLA-C*07:453, HLA-C*07:454:01, HLA-C*07:454:02, HLA-C*07:455, HLA-C*07:456, HLA-C*07:457, HLA-C*07:458, HLA-C*07:459, HLA-C*07:46, HLA-C*07:4604:02, HLA-C*07:455, HLA-C*07:456, HLA-C*07:457, HLA-C*07:458, HLA-C*07:459, HLA-C*07:46, HLA-C*07:460, HLA-C*07: LA-C*07:461, HLA-C*07:462, HLA-C*07:463, HLA-C*07:464, HL AC*07:465, HLA-C*07:466, HLA-C*07:467, HLA-C*07:468, HL AC*07:469, HLA-C*07:47, HLA-C*07:470, HLA-C*07:471, HLA-C*07:472, HLA-C*07:473, HLA-C*07:474, HLA-C*07:475, HLA-C*07:476, HLA-C*07:477, HLA-C*07:478, HLA-C*07:479, HLA-C* 07:48, HLA-C*07:480, HLA-C*07:481, HLA-C*07:482, HLA-C*07:483, HLA-C*07:484, HLA-C*07:485, HLA-C*07:486, HLA-C*07:487, HLA-C*07:488, HLA-C*07:489, HLA-C*07:49, HLA-C*07:49 0、HLA-C*07:491:01、HLA-C*07:491:02、HLA-C*07:492、HLA-C*07:493、HLA-C*07:494、HLA-C*07:495、HLA-C*07:496、HLA-C*07:497、HLA-C*07:498、HLA-C*07:499、HLA-C*07:50、HLA-C*07: 500、HLA-C*07:501、HLA-C*07:502、HLA-C*07:503、HLA-C*07:504、HLA-C*07:505、HLA-C*07:506、HLA-C*07:507、HLA-C*07:508、HLA-C*07:509、HLA-C*07:51、HLA-C*07:510、HLA-C*07:511、HLA-C*07:512, HLA-C*07:513, HLA-C*07:514, HLA-C*07:515, HLA-C*07:516, HLA-C*07:517, HLA-C*07:518, HLA-C*07:519, HLA-C*07:52, HLA-C*07:520, HLA-C*07:521:01, HLA-C*07:521:02, HLA-C*07:522, HLA-C*07:523, HLA-C*07:524, HLA-C*07:525, HLA-C*07:526, HLA-C*07:527, HLA-C*07:528, HLA-C*07:529, HLA-C*07:529, HLA-C*07:529, HLA-C*07:529, HLA-C*07:529, HLA-C*07:529, HLA-C*07:521:02, HLA-C*07:529 LA-C*07:526:01、HLA-C*07:526:02、HLA-C*07:527、HLA-C*07:528、HLA-C*07:529、HLA-C*07:53、HLA-C*07:530、HLA-C*07:531、HLA-C*07:532、HLA-C*07:533、HLA-C*07:534、HLA-C*07:535、H LA-C*07:536、HLA-C*07:537、HLA-C*07:538、HLA-C*07:539、HL AC*07:54, HLA-C*07:540, HLA-C*07:541, HLA-C*07:542, HLA-C*07:543, HLA-C*07:544, HLA-C*07:545, HLA-C*07:546, HLA-C*07:547, HLA-C*07:548, HLA-C*07:549, HLA-C*07:550, HLA-C*07:551, HLA-C*07:552, HLA-C*07:553, HLA-C*07:554, HLA-C*07 :555、HLA-C*07:556、HLA-C*07:557、HLA-C*07:558:01:01、HLA-C*07:558:01:02、HLA-C*07:559、HLA-C*07:55、HLA-C*07:560、HLA-C*07:561、HLA-C*07:562、HLA-C*07:563、HLA-C*07:564、HLA-C*07:565、HLA-C*07:566、HLA-C*07:567、HLA-C*07:568、H LA-C*07:569、HLA-C*07:56:01、HLA-C*07:56:02、HLA-C*07:57、HLA-C*07:570、HLA-C*07:571、HLA-C*07:572、HLA-C*07:573、HLA-C*07:574、HLA-C*07:575、HLA-C*07:576, HLA-C*07:577, HLA AC*07:578, HLA-C*07:579, HLA-C*07:58, HLA-C*07:580, HLA-C*07:581, HLA-C*07:582, HLA-C*07:583, HLA-C*07:584, HLA-C*07:585, HLA-C*07:586, HLA-C*07:587, HLA-C*07:588, HLA-C*07:589, HLA-C*0 7:59, HLA-C*07:590, HLA-C*07:591, HLA-C*07:592, HLA-C*07:593, HLA-C*07:594, HLA-C*07:595, HLA-C*07:596, HLA-C*07:597, HLA-C*07:598, HLA-C*07:599, HLA-C*07:60, HLA-C*07:600:01, HLA-C*07: 600:02、HLA-C*07:601、HLA-C*07:602、HLA-C*07:603、HLA-C*07:604、HLA-C*07:605、HLA-C*07:606、HLA-C*07:607、HLA-C*07:608、HLA-C*07:609、HLA-C*07:610、HLA-C*07:611、HLA-C*07:612、HLA-C*07: 613、HLA-C*07:614、HLA-C*07:615、HLA-C*07:616、HLA-C*07:617、HLA-C*07:618、HLA-C*07:619、HLA-C*07:61、HLA-C*07:62、HLA-C*07:620、HLA-C*07:621、HLA-C*07:622、HLA-C*07:623、HLA-C*07:624、H LA-C*07:625, HLA-C*07:626, HLA-C*07:627, HLA-C*07:628, HL AC*07:629, HLA-C*07:63, HLA-C*07:630, HLA-C*07:631, HLA-C*07:632, HLA-C*07:633, HLA-C*07:634, HLA-C*07:635, HLA-C*07:636, HLA-C*07:637, HLA-C*07:638, HLA-C*07:639, HLA-C*07:64, HLA-C*07:640, HLA-C*07:641, HLA-C*07:642, HLA-C*07:643,HLA-C*07:644, HLA-C*07:645, HLA-C*07:646, HLA-C*07:647, HLA-C*07:648, HLA-C*07:649, HLA-C*07:65, HLA-C*07:650:01, HLA-C*07:650:02, HLA-C*07:651, HLA-C*07:652, HLA-C*07:653, HLA-C*07:654, HLA-C*07:655, HLA-C*07:656, HLA-C*07:657, HLA-C*07:658, HLA-C*07:659, HLA-C*07 :66、HLA-C*07:660、HLA-C*07:661、HLA-C*07:662、HLA-C*07:663、HLA-C*07:664、HLA-C*07:665、HLA-C*07:666、HLA-C*07:667、HLA-C*07:668、HLA-C*07:669、HLA-C*07:67、HLA-C*07:670、HLA-C*07:671、HLA-C*07:672、HLA-C*07:673、HLA-C*07:674、HLA-C*07:675、HLA-C*07:676、HLA-C*07:6 77、HLA-C*07:678、HLA-C*07:679、HLA-C*07:68、HLA-C*07:680、HLA-C*07:681、HLA-C*07:682:01:01、HLA-C*07:682:01:02、HLA-C*07:682:02、HLA-C*07:683、HLA-C*07:684、HLA-C*07:685、HLA-C*07:686、HLA-C*07:687、HLA-C*07:688、HLA-C*07:689、HLA-C*07:69、HLA-C*07:690、HLA-C*07:6 91、HLA-C*07:692、HLA-C*07:693、HLA-C*07:694、HLA-C*07:695:01:01、HLA-C*07:695:01:02、HLA-C*07:696、HLA-C*07:697、HLA-C*07:698、HLA-C*07:699、HLA-C*07:70、HLA-C*07:700、HLA-C*07:701、HLA-C*07:702、HLA-C*07:703、HLA-C*07:704、HLA-C*07:705、HLA-C*07:706、HLA-C*07:707、HLA-C*07:708、HLA-C*07:709、HLA-C*07:71、HLA-C*07:710、HLA-C*07:711、HLA-C*07:712、HLA -C*07:713、HLA-C*07:714、HLA-C*07:715、HLA-C*07:716、HLA-C*07:717、HLA-C*07:718、HLA-C *07:719、HLA-C*07:72、HLA-C*07:720、HLA-C*07:721、HLA-C*07:722、HLA-C*07:723、HLA-C*07 :724、HLA-C*07:73:01、HLA-C*07:73:02、HLA-C*07:74、HLA-C*07:75、HLA-C*07:76:01、HLA-C*0 7:76:02、HLA-C*07:77、HLA-C*07:78:01、HLA-C*07:78:02、HLA-C*07:79、HLA-C*07:80、HLA-C* 07:81、HLA-C*07:82、HLA-C*07:83、HLA-C*07:84、HLA-C*07:85、HLA-C*07:86、HLA-C*07:87、HL A-C*07:88、HLA-C*07:89、HLA-C*07:90、HLA-C*07:91、HLA-C*07:92、HLA-C*07:93、HLA-C*07:9 4、HLA-C*07:95、HLA-C*07:96:01、HLA-C*07:96:02、HLA-C*07:97、HLA-C*07:98、HLA-C*07:99。、
[0140] II.A.2
[0141] The second nucleotide sequence of the nucleic acid molecule disclosed herein may be any sequence capable of inhibiting the expression of endogenous TCR or any polypeptide capable of encoding the inhibition of endogenous TCR expression. In some embodiments, the second nucleotide sequence is one or more siRNAs. In some embodiments, one or more siRNAs are complementary to a target sequence within the nucleotide sequence encoding a constant region of the endogenous TCR. In some embodiments, one or more siRNAs are complementary to a target sequence within the nucleotide sequence encoding a constant region of the wild-type human TCR. In some embodiments, one or more siRNAs are complementary to a target sequence within the nucleotide sequence encoding a constant region of the α chain of the wild-type TCR. In some embodiments, one or more siRNAs are complementary to a target sequence within the nucleotide sequence encoding a constant region of the β chain of the wild-type TCR. In some embodiments, one or more siRNAs comprise (i) one or more siRNAs complementary to a target sequence within the nucleotide sequence encoding a constant region of the α chain of the wild-type TCR and (ii) one or more siRNAs complementary to a target sequence within the nucleotide sequence encoding a constant region of the β chain of the wild-type TCR.
[0142] In some embodiments, one or more siRNAs comprise nucleotide sequences selected from the group consisting of SEQ ID NO:53-56 (Table 4). In some embodiments, a second nucleotide sequence of a nucleic acid molecule encodes one or more siRNAs, wherein said one or more siRNAs are complementary to a target sequence within a nucleotide sequence encoding a constant region of the α chain of a wild-type TCR, and wherein said one or more siRNAs comprise nucleic acid sequences listed in SEQ ID NO:53 and 54.
[0143] Table 4. siRNA sequences
[0144]
[0145] In some embodiments, the second nucleotide sequence of the nucleic acid molecule encodes one or more siRNAs, wherein the one or more siRNAs are complementary to a target sequence within a nucleotide sequence encoding a constant region of the β chain of a wild-type TCR, and wherein the one or more siRNAs comprise the nucleic acid sequences listed in SEQ ID NO: 55 and 56. In some embodiments, the second nucleotide sequence of the nucleic acid molecule encodes one or more siRNAs, wherein the one or more siRNAs comprise (i) one or more siRNAs complementary to a target sequence within a nucleotide sequence encoding a constant region of the α chain of a wild-type TCR, wherein the one or more siRNAs comprise the nucleic acid sequences listed in SEQ ID NO: 53 and 54; and (ii) one or more siRNAs complementary to a target sequence within a nucleotide sequence encoding a constant region of the β chain of a wild-type TCR, wherein the one or more siRNAs comprise the nucleic acid sequences listed in SEQ ID NO: 55 and 56.
[0146] In some embodiments, the second nucleotide sequence of the nucleic acid molecule comprises SEQ ID NO:53-56. In some embodiments, the second nucleotide sequence comprises SEQ ID NO:53-56, wherein one or more of SEQ ID NO:53-56 are separated by one or more nucleic acids that do not encode siRNA. In some embodiments, the one or more siRNAs are selected from the siRNA disclosed in U.S. Publication No. 2010 / 0273213A1, which is incorporated herein by reference in its entirety.
[0147] In some embodiments, the second nucleotide sequence of the nucleic acid molecule encodes a protein capable of inhibiting the expression of an endogenous (e.g., wild-type) TCR. In some embodiments, the second nucleotide sequence encodes Cas9.
[0148] II.A.3 carrier
[0149] Certain aspects of this invention relate to vectors comprising nucleic acid molecules disclosed herein. In some embodiments, the vector is a viral vector. In some embodiments, the vector is a viral particle or virus. In some embodiments, the vector is a mammalian vector. In some embodiments, the vector is a bacterial vector.
[0150] In some embodiments, the vector is a retroviral vector. In some embodiments, the vector is selected from the group consisting of adenovirus vectors, lentiviruses, Sendai virus, baculovirus vectors, Epstein-Barr virus vectors, lactoviral vectors, vaccinia virus vectors, herpes simplex virus vectors, and adeno-associated virus (AAV) vectors. In a particular embodiment, the vector is an AAV vector. In some embodiments, the vector is a lentivirus. In a particular embodiment, the vector is an AAV vector. In some embodiments, the vector is Sendai virus. In some embodiments, the vector is a hybrid vector. Examples of hybrid vectors that can be used in this invention can be found in Huang and Kamihira, Biotechnol. Adv. 31(2):208-23(2103), which is incorporated herein by reference in its entirety.
[0151] II.B. Recombinant T-cell receptor (TCR)
[0152] Certain aspects of this invention relate to the specific binding of a recombinant T-cell receptor (TCR) of human gp100 or its antigen-binding moiety (“anti-gp100 TCR”). In some embodiments, the anti-gp100 TCR is encoded by a nucleic acid molecule disclosed herein.
[0153] In some embodiments, the anti-gp100 TCR cross-competitively binds to human gp100 with a reference TCR. In some embodiments, the anti-gp100 TCR binds to the same or overlapping epitopes of human gp100 as the reference TCR. In some embodiments, the reference TCR comprises an α chain and a β chain, and the α chain of the reference TCR comprises the amino acid sequence as listed in SEQ ID NO:1. In some embodiments, the β chain of the reference TCR comprises the amino acid sequence as listed in SEQ ID NO:2.
[0154] In some embodiments, the anti-gp100 TCR comprises an α chain and a β chain, wherein the α chain comprises a constant region, and wherein the β chain comprises a constant region; wherein the constant region of the α chain comprises an amino acid sequence having at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the constant region of the α chain comprising the amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR comprises an α chain and a β chain, wherein the α chain comprises a constant region, and wherein the constant region of the β chain comprises an amino acid sequence having at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the constant region of the β chain comprising the amino acid sequence listed in SEQ ID NO:2.
[0155] In some embodiments, the anti-gp100 TCR comprises an α chain and a β chain, wherein the α chain comprises a constant region, and wherein the β chain comprises a constant region; wherein (i) the α chain constant region comprises an amino acid sequence having at least 1, at least 2, at least 3, at least 4, or at least 5 amino acid substitutions relative to the constant region of the α chain comprising the amino acid sequence listed in SEQ ID NO:1; and (ii) the β chain constant region comprises an amino acid sequence having at least 1, at least 2, at least 3, at least 4, or at least 5 amino acid substitutions relative to the constant region of the β chain comprising the amino acid sequence listed in SEQ ID NO:2.
[0156] In some embodiments, the α-chain of the anti-gp100 TCR includes variable domains containing α-chain CDR1, α-chain CDR2, and α-chain CDR3; and the β-chain of the anti-gp100 TCR includes variable domains containing β-chain CDR1, β-chain CDR2, and β-chain CDR3. In some embodiments, the anti-gp100 TCR includes an α-chain CDR3 containing the amino acid sequence listed in SEQ ID NO:7. In some embodiments, the anti-gp100 TCR includes a β-chain CDR3 containing the amino acid sequence listed in SEQ ID NO:10.
[0157] In some embodiments, the α-chain CDR1 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:5. In some embodiments, the β-chain CDR1 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:8.
[0158] In some embodiments, the α-chain CDR2 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:6. In some embodiments, the β-chain CDR2 of the anti-gp100 TCR comprises the amino acid sequence as listed in SEQ ID NO:9.
[0159] In some embodiments, the anti-gp100 TCR comprises an α-chain variable domain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the variable domain of the α-chain amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR comprises an α-chain variable domain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the variable domain of the α-chain amino acid sequence listed in SEQ ID NO:1, wherein the anti-gp100 TCR comprises an α-chain CDR3 containing the amino acid sequence as listed in SEQ ID NO:7. In some embodiments, the anti-gp100 TCR comprises an α-chain variable domain present in the α-chain amino acid sequence listed in SEQ ID NO:1.
[0160] In some embodiments, the anti-gp100 TCR comprises a β-chain variable domain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the variable domain of the β-chain amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR comprises a β-chain variable domain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the variable domain of the β-chain amino acid sequence listed in SEQ ID NO:2, wherein the anti-gp100 TCR comprises a β-chain CDR3 containing the amino acid sequence as listed in SEQ ID NO:10. In some embodiments, the anti-gp100 TCR comprises a β-chain variable domain present in the β-chain amino acid sequence listed in SEQ ID NO:2.
[0161] In some embodiments, the anti-gp100 TCR encoded by the first nucleotide further comprises an α-chain constant region, a β-chain constant region, or both an α-chain constant region and a β-chain constant region. In some embodiments, the anti-gp100 TCR comprises an α-chain constant region having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the constant region of the α-chain amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR comprises an α-chain constant region having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the constant region of the α-chain amino acid sequence listed in SEQ ID NO:1, wherein the anti-gp100 TCR comprises an α-chain CDR3 containing the amino acid sequence as listed in SEQ ID NO:7. In some embodiments, the anti-gp100 TCR comprises an α-chain constant region present in the α-chain amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide also comprises an α-constant region different from an endogenous (e.g., naturally occurring) constant region of the α-chain. In some embodiments, the α-chain constant region comprises an amino acid sequence containing at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the constant region of the α-chain amino acid sequence listed in SEQ ID NO:1.
[0162] In some embodiments, the anti-gp100 TCR comprises a β-chain constant region having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the constant region of the β-chain amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR comprises a β-chain constant region having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99% sequence identity with the constant region of the β-chain amino acid sequence listed in SEQ ID NO:2, wherein the anti-gp100 TCR comprises a β-chain CDR3 containing the amino acid sequence as listed in SEQ ID NO:10. In some embodiments, the anti-gp100 TCR comprises the β-chain constant region present in the β-chain amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR encoded by the first nucleotide also includes a β constant region, which is an endogenous (e.g., naturally occurring) constant region different from the β chain. In some embodiments, the β chain constant region includes an amino acid sequence comprising at least one, at least two, at least three, at least four, or at least five amino acid substitutions relative to the β chain amino acid sequence listed in SEQ ID NO:2.
[0163] In some embodiments, the anti-gp100 TCR comprises an α-chain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the α-chain amino acid sequence listed in SEQ ID NO:1. In some embodiments, the anti-gp100 TCR comprises an α-chain CDR3 containing the amino acid sequence listed in SEQ ID NO:7. In some embodiments, the anti-gp100 TCR comprises an α-chain containing the amino acid sequence listed in SEQ ID NO:1.
[0164] In some embodiments, the anti-gp100 TCR comprises a β-chain having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the β-chain amino acid sequence listed in SEQ ID NO:2. In some embodiments, the anti-gp100 TCR comprises a β-chain CDR3 containing the amino acid sequence listed in SEQ ID NO:2.
[0165] In some embodiments, the anti-gp100 TCR comprises an α-chain constant region, a β-chain constant region, or both; and wherein the α-chain constant region, the β-chain constant region, or both comprise an amino acid sequence having at least one, at least two, at least three, at least four, or at least five substituted amino acid sequences relative to the endogenous TCR within the target sequence.
[0166] II.B.2. Epitope
[0167] In some embodiments, the anti-gp100 TCR binds to the same epitope as the reference TCR. In some embodiments, the anti-gp100 TCR binds to an epitope of gp100 comprising the amino acid sequence listed in SEQ ID NO:13. In some embodiments, the anti-gp100 TCR binds to an epitope of gp100 consisting of an amino acid sequence as listed in SEQ ID NO:13. In some embodiments, the epitope consists of amino acid residues 479-487 (SEQ ID NO:52) of gp100, for example, “gp100”. 479-487 ".
[0168] In some embodiments, the epitope is complexed with an HLA class I molecule. In some embodiments, the HLA class I molecule is selected from HLA-A, HLA-B, and HLA-C alleles. In some embodiments, the HLA class I molecule is selected from HLA-E, HLA-F, and HLA-G alleles. In some embodiments, the HLA class I molecule is an HLA-A allele. In some embodiments, the HLA class I molecule is an HLA-B allele. In some embodiments, the HLA class I molecule is an HLA-C allele.
[0169] Many HLA-A, HLA-B, and HLA-C alleles are known in the art, and any of these known alleles may be used in this invention. An updated list of HLA alleles is available at hla.alleles.org / (last accessed February 27, 2019). In some embodiments, the HLA class 1 molecule is selected from the following HLA-C alleles: HLA-C*01, HLA-C*02, HLA-C*03, HLA-C*04, HLA-C*05, HLA-C*06, HLA-C*07, HLA-C*08, HLA-C*12, HLA-C*14, HLA-C*15, HLA-C*16, HLA-C*17, and HLA-C*18. In some embodiments, the HLA-C allele is the HLA-C*07:01 allele. In some embodiments, the HLA-C allele is the HLA-C*07:02 allele. In some embodiments, the HLA-C allele is the HLA-C*07:03 allele. In some embodiments, the HLA-C allele is the HLA-C*07:04 allele. In some embodiments, the HLA-C allele is the HLA-C*07:05 allele. In some embodiments, the HLA-C allele is the HLA-C*07:06 allele. In some embodiments, the HLA-C allele is the HLA-C*07:07 allele. In some embodiments, the HLA-C allele is the HLA-C*07:08 allele.
[0170] In the updated version, HLA 1 is up to date with Facebook HLA-C*07:01:01:01、HLA-C*07:01:01:02、HLA-C*07:01:01:03、HLA-C*07:01:01:04、HLA- C*07:01:01:05、HLA-C*07:01:01:06、HLA-C*07:01:01:07、HLA-C*07:01:01:08、HLA-C*07:01:01: 09、HLA-C*07:01:01:10、HLA-C*07:01:01:11、HLA-C*07:01:01:12、HLA-C*07:01:01:13、HLA-C*07 :01:01:14、HLA-C*07:01:01:15、HLA-C*07:01:01:16、HLA-C*07:01:01:17、HLA-C*07:01:01:18、HL AC*07:01:01:19、HLA-C*07:01:01:20、HLA-C*07:01:01:21、HLA-C *07:01:01:22、HLA-C*07:01:01:23、HLA-C*07:01:01:24、HLA-C*0 7:01:01:25、HLA-C*07:01:01:26、HLA-C*07:01:01:27、HLA-C*07: 01:01:28、HLA-C*07:01:02、HLA-C*07:01:03、HLA-C*07:01:04、HL AC*07:01:05、HLA-C*07:01:06、HLA-C*07:01:07、HLA-C*07:01:08、HLA-C*07:01:09、HLA-C*07:0 1:10、HLA-C*07:01:11、HLA-C*07:01:12、HLA-C*07:01:13、HLA-C*07:01:14、HLA-C*07:01:15、HL AC*07:01:16、HLA-C*07:01:17、HLA-C*07:01:18、HLA-C*07:01:19、HLA-C*07:01:20、HLA-C*07:0 1:21、HLA-C*07:01:22、HLA-C*07:01:23、HLA-C*07:01:24、HLA-C*07:01:25、HLA-C*07:01:26、HL AC*07:01:27、HLA-C*07:01:28、HLA-C*07:01:29、HLA-C*07:01:30、HLA-C*07:01:31、HLA-C*07:01:32、HLA-C*07:01:33、HLA-C*07:01:34、HLA-C*07:01:35、HLA-C*07:01:36、HLA-C*07:01:37、HL AC*07:01:38、HLA-C*07:01:39、HLA-C*07:01:40、HLA-C*07:01:41、HLA-C*07:01:42、HLA-C*07:01:43、HLA-C*07:01:44、HLA-C*07:01:45、HLA-C*07:01:46、HLA-C*07:01:47、HLA-C*07:01:48、HL A-C*07:01:49、HLA-C*07:01:50、HLA-C*07:01:51、HLA-C*07:01:52、HLA-C*07:01:53、HLA-C*07:01:54、HLA-C*07:01:55、HLA-C*07:01:56、HLA-C*07:01:57、HLA-C*07:01:58、HLA-C*07:01:59、HL AC*07:01:60、HLA-C*07:01:61、HLA-C*07:01:62、HLA-C*07:01:63、HLA-C*07:01:64、HLA-C*07:01:65、HLA-C*07:01:66、HLA-C*07:01:67、HLA-C*07:01:68、HLA-C*07:01:69、HLA-C*07:01:70、HL AC*07:01:71、HLA-C*07:01:72、HLA-C*07:01:73、HLA-C*07:01:74、HLA-C*07:01:75、HLA-C*07:01:76、HLA-C*07:01:77、HLA-C*07:02:01:01、HLA-C*07:02:01:02、HLA-C*07:02:01:03、HLA-C*07:02:01:04、HLA-C*07:02:01:05、HLA- C*07:02:01:06、HLA-C*07:02:01:07、HLA-C*07:02:01:08、HLA-C*07:02:01:09、HLA-C*07:02:01:10、HLA-C*07:02:01:11、HLA-C*07:02:01:12、HLA-C*07:02:01:13、HLA-C*07:02:01:14、HLA-C*07:02:01:15、HLA-C*07:02:01:16、HL AC*07:02:01:17、HLA-C*07:02:01:18、HLA-C*07:02:01:19、HLA-C*07:02:01:20、HLA-C*07:02:01:21、HLA-C*07:02:01:2 2、HLA-C*07:02:01:23、HLA-C*07:02:01:24、HLA-C*07:02:01:25、HLA-C*07:02:01:26、HLA-C*07:02:01: 27、HLA-C*07:02:01:28、HLA-C*07:02:01:29、HLA-C*07:02:01:30、HLA-C*07:02:01:31、HLA-C*07:02:0 1:32、HLA-C*07:02:01:33、HLA-C*07:02:01:35 HLA-C*07:02:01:36 I'm still here 1She was also involved in the HLA-C gene:HLA-C*07:02:0 、HLA-C*07:02:03、HLA-C*07:02:04、HLA-C*07: 02:05、HLA-C*07:02:06、HLA-C*07:02:07、HLA-C*07:02:08、HLA-C*07:02:09、HLA-C*07:02:10 、HLA-C*07:02:100、HLA-C*07:02:101、HLA-C*07:02:102、HLA-C*07:02:103、HLA-C*07:02:10 4:01、HLA-C*07:02:104:02、HLA-C*07:02:11、HLA-C*07:02:12、HLA-C*07:02:13、HLA-C*07:02 :14、HLA-C*07:02:15、HLA-C*07:02:16、HLA-C*07:02:17、HLA-C*07:02:18、HLA-C*07:02:19、 HLA-C*07:02:20、HLA-C*07:02:21、HLA-C*07:02:22、HLA-C*07:02:23、HLA-C*07:02:24、HLA-C *07:02:25、HLA-C*07:02:26、HLA-C*07:02:27、HLA-C*07:02:28、HLA-C*07:02:29、HLA-C*07:0 2:30、HLA-C*07:02:31、HLA-C*07:02:32、HLA-C*07:02:33、HLA-C*07:02:34、HLA-C*07:02:35、HLA-C*07:02:36、HLA-C*07:02:37、HLA-C*07:02:38、HLA-C*07:02:39、HLA-C*07:02:40、HLA-C*07:02:41、HLA-C*07:02:42、HLA-C*07:02:43、HLA-C*07:02:44、HLA-C*07:02:45、HLA-C*07:02:46、HLA-C*07:02:47、HLA-C*07:02:48、HLA-C*07:02:49、HLA-C*07:02:50、HLA-C*07:02:51、HLA-C*0 7:02:52, HLA-C*07:02:53, HLA-C*07:02:54, HLA-C*07:02:55, HLA-C*07:02:56, HLA-C*07:02:57, HLA-C*07:02:58, HLA-C*07:02:59, HLA-C*07:02:60, HLA-C*07:02:61, HLA-C*07:02:62, HLA-C*07:02:63, HLA-C*07:02:64, HLA-C*07:02:65, HLA-C*07:02:66, HLA-C*07:02:67, HLA-C*07:02:68, HLA-C*07:02:69、HLA-C*07:02:70、HLA-C*07:02:71、HLA-C*07:02:72、HLA-C*07:02:73、HLA-C*07:02:74、HLA-C*07:02:75、HLA-C*07:02:76、HLA-C*07:02:77、HLA-C*07:02:78、HLA-C*07:02:79、HLA-C*07:02:80、HLA-C*07:02:81、HLA-C*07:02:82、HLA-C*07:02:83、HLA-C*07:02:84、HLA-C*0 7:02:85, HLA-C*07:02:86, HLA-C*07:02:87, HLA-C*07:02:88, HLA-C*07:02:89, HLA-C*07:02:90, HLA-C*07:02:91, HLA-C*07:02:92, HLA-C*07:02:93, HLA-C*07:02:94, HLA-C*07:02:95, HLA-C*07:02:96, HLA-C*07:02:97, HLA-C*07:02:98, HLA-C*07:02:99, HLA-C*07:03, HLA-C*07:04:01:01,HLA-C*07:04:01:02、HLA-C*07:04:01:03、HLA-C*07:04:01:04、HLA-C*07:04:02:01、HLA-C*07:04:02:02、HLA-C*07:04:03、HLA-C*07:04:04、HLA-C*07:04:05、HL AC*07:04:06、HLA-C*07:04:07、HLA-C*07:04:08、HLA-C*07:04:09、HLA-C*07:04:10、HLA-C*07:04:11、HLA-C*07:04:12、HLA-C*07:04:13、HLA-C*07:04:14、HLA-C*07:04:15、HLA-C*07:04:16、HL AC*07:04:17、HLA-C*07:04:18、HLA-C*07:05、HLA-C*07:06:01:01、HLA-C*07:06:01:02、HLA-C*07:06:02、HLA-C*07:07、HLA-C*07:08、HLA-C*07:09、HLA-C*07:10、HLA-C*07:100、HLA-C*07:101、HLA-C*07: 102、HLA-C*07:103、HLA-C*07:104、HLA-C*07:105、HLA-C*07:106、HLA-C*07:107、HLA-C*07:108:01、HLA-C*07:108:02、HLA-C*07:109:01、HLA-C*07:109:02、HLA-C*07:11、HLA-C*07:110、HLA-C*07:111、HLA -C*07:112、HLA-C*07:113、HLA-C*07:114、HLA-C*07:115、HLA-C*07:116、HLA-C*07:117、HLA-C*07:118、HLA-C*07:119、HLA-C*07:12、HLA-C*07:120、HLA-C*07:121、HLA-C*07:122、HLA-C*07:123、HLA-C*07: 124、HLA-C*07:125、HLA-C*07:126、HLA-C*07:127:01、HLA-C*07:127:02、HLA-C*07:128、HLA-C*07:129、HLA-C*07:13、HLA-C*07:130、HLA-C*07:131:01、HLA-C*07:131:02、HLA-C*07:132、HLA-C*07:133:01、HLA-C*07:133:02、HLA-C*07:134、HLA-C*07:135、HLA-C*07:136、HLA-C*07:137:01、HLA-C*07:137:02、HLA-C*07:138、HLA-C*07:139、HLA-C*07:14、HLA-C*07:140、HLA-C*07:141:01、HLA-C*07:141:02、HLA-C*07:142、HLA-C*07:143、HLA-C*07:144、HLA-C*07:145、HLA-C*07:146、HLA-C*07:147、 HLA-C*07:148, HLA-C*07:149, HLA-C*07:15, HLA-C*07:150, HLA-C*07:151, HLA-C*07:152, HLA-C*07:153, HLA-C*07:154, HLA-C*07:155, HLA-C*07:156, HLA-C*07:157, HLA-C*07:158, HLA-C*07:159, HLA-C*07:16, HLA-C*07:160, HLA-C*07:161, HLA-C*07:162, HLA-C*07:163, HLA-C*07:164, HLA -C*07:165, HLA-C*07:166, HLA-C*07:167, HLA-C*07:168, HLA-C*07:169, HLA-C*07:170, HLA-C*07:171, HLA-C*07:172:01, HLA-C*07:172:02, HLA-C*07:173, HLA-C*07:174, HLA-C*07:175, HLA-C*07:176, HLA-C*07:177, HLA-C*07:178, HLA-C*07:179, HLA-C*07:17:01, HLA-C*07:17:02, HLA-C*0 7:17:03, HLA-C*07:17:04, HLA-C*07:180, HLA-C*07:181, HLA-C*07:182, HLA-C*07:183, HLA-C*07:184, HLA-C*07:185, HLA-C*07:186, HLA-C*07:187, HLA-C*07:188, HLA-C*07:189, HLA-C*07:18:01:01, HLA-C*07:18:01:02, HLA-C*07:18:01:03, HLA-C*07:18:02, HLA-C*07:18:03, HLA-C*07:19,HLA-C*07:190, HLA-C*07:191, HLA-C*07:192, HLA-C*07:193, HLA-C*07:194, HLA-C*07:195, HLA-C*07:196, HLA-C*07:197, HLA-C*07:198, HLA-C*07:199:01, HLA-C*07:199:02, HLA-C*07:20, HLA-C*07:200, HLA-C*07:201, HLA-C*07:202, HLA-C*07:203, HLA-C*07:204:01, HLA-C*07:204:02, HLA-C *07:205, HLA-C*07:206, HLA-C*07:207, HLA-C*07:208, HLA-C*07:209, HLA-C*07:21, HLA-C*07:210, HLA-C*07:211, HLA-C*07:212, HLA-C*07:213, HLA-C*07:214, HLA-C*07:215, HLA-C*07:216, HLA-C*07:217, HLA-C*07:218, HLA-C*07:219, HLA-C*07:22, HLA-C*07:220, HLA-C*07:221, HLA-C*07:2 22、HLA-C*07:223、HLA-C*07:224、HLA-C*07:225、HLA-C*07:226、HLA-C*07:227、HLA-C*07:228、HLA-C*07:229、HLA-C*07:23、HLA-C*07:230、HLA-C*07:231、HLA-C*07:232、HLA-C*07:233、HLA-C*07:234、HLA-C*07:235、HLA-C*07:236、HLA-C*07:237、HLA-C*07:238、HLA-C*07:239、HLA-C*07:24、HL A-C*07:240, HLA-C*07:241, HLA-C*07:242, HLA-C*07:243, HLA-C*07:244, HLA-C*07:245, HLA-C*07:246:01, HLA-C*07:246:02, HLA-C*07:247, HLA-C*07:248, HLA-C*07:249, HLA-C*07:25, HLA-C*07:250, HLA-C*07:251, HLA-C*07:252, HLA-C*07:253, HLA-C*07:254, HLA-C*07:255, HLA-C*07:256,HLA-C*07:257:01, HLA-C*07:257:02, HLA-C*07:257:03, HLA-C*07:257:04, HLA-C*07:258, HLA-C*07:259, HLA-C*07:260:01, HLA-C*07:260:02, HLA-C*07:261, HLA-C*07:262, HLA-C*07:263, HLA-C*07:264, HLA-C*07:265, HLA-C*07:266, HLA-C*07:267, HLA-C*07:268, HLA-C*07:269, HLA-C*07:26 :01、HLA-C*07:26:02、HLA-C*07:26:03、HLA-C*07:270、HLA-C*07:271、HLA-C*07:272、HLA-C*07:273、HLA-C*07:274、HLA-C*07:275、HLA-C*07:276、HLA-C*07:277、HLA-C*07:278、HLA-C*07:279、HLA-C*07:27:01、HLA-C*07:27:02、HLA-C*07:28、HLA-C*07:280、HLA-C*07:281、HLA-C*07:282、HLA-C *07:283, HLA-C*07:284, HLA-C*07:285, HLA-C*07:286, HLA-C*07:287, HLA-C*07:288, HLA-C*07:289, HLA-C*07:290, HLA-C*07:291, HLA-C*07:292, HLA-C*07:293, HLA-C*07:294, HLA-C*07:296, HLA-C*07:297, HLA-C*07:298, HLA-C*07:299, HLA-C*07:29:01, HLA-C*07:29:02, HLA-C*07:30, HLA-C *07:300, HLA-C*07:301, HLA-C*07:302, HLA-C*07:303, HLA-C*07:304, HLA-C*07:305, HLA-C*07:306, HLA-C*07:307, HLA-C*07:308, HLA-C*07:309, HLA-C*07:310, HLA-C*07:311, HLA-C*07:312, HLA-C*07:313, HLA-C*07:314:01, HLA-C*07:314:02, HLA-C*07:314:03, HLA-C*07:315, HLA-C*07:316,HLA-C*07:317、HLA-C*07:318、HLA-C*07:319、HLA-C*07:31:01、HLA-C*07:31:02、HLA-C*07:320、HLA-C*07:321、HLA-C*07:322、HLA-C*07:323、HLA-C*07:324、HLA-C*07:325、HLA-C*07:326、HLA-C*07:327、HLA-C*07:328、HLA-C*07:329、HLA-C*07:32、HLA-C*07:330:01、HLA-C*07:330:02、HLA- C*07:331、HLA-C*07:332、HLA-C*07:333、HLA-C*07:334、HLA-C*07:335、HLA-C*07:336、HLA-C*07:337、HLA-C*07:338、HLA-C*07:339、HLA-C*07:33、HLA-C*07:340、HLA-C*07:341:01、HLA-C*07:341:02、HLA-C*07:342、HLA-C*07:343:01:01、HLA-C*07:343:01:02、HLA-C*07:344、HLA-C*07:345、H LA-C*07:346, HLA-C*07:347, HLA-C*07:348, HLA-C*07:349, HLA-C*07:35, HLA-C*07:350, HLA-C*07:351, HLA-C*07:352, HLA-C*07:353, HLA-C*07:354, HLA-C*07:355, HLA-C*07:356, HLA-C*07:357, HLA-C*07:358, HLA-C*07:359, HLA-C*07:36, HLA-C*07:360, HLA-C*07:361, HLA-C*07:362, HLA- C*07:363、HLA-C*07:364、HLA-C*07:365、HLA-C*07:366、HLA-C*07:367、HLA-C*07:368:01、HLA-C*07:368:02、HLA-C*07:369、HLA-C*07:37、HLA-C*07:370、HLA-C*07:371、HLA-C*07:372、HLA-C*07:373、HLA-C*07:374、HLA-C*07:375、HLA-C*07:376、HLA-C*07:377、HLA-C*07:378、HLA-C*07:379、HLA-C*07:380, HLA-C*07:381, HLA-C*07:382, HLA-C*07:383, HLA-C*07:384, HLA-C*07:385, HLA-C*07:386, HLA-C*07:387, HLA-C*07:388, HLA-C*07:389, HLA-C*07:38:01, HLA-C*07:38:02, HLA-C*07:39, HLA-C*07:390, HLA -C*07:391, HLA-C*07:392, HLA-C*07:393, HLA-C*07:394, HLA-C*07:395, HLA-C*07:396, HLA-C*07:397, HLA-C*07:398, HLA-C*07:399, HLA-C*07:40, HLA-C*07:400, HLA-C*07:401, HLA-C*07:402, HLA-C*07:403, HLA-C*07:40 4、HLA-C*07:405、HLA-C*07:406、HLA-C*07:407、HLA-C*07:408、HLA-C*07:409、HLA-C*07:41、HLA-C*07:410、HLA-C*07:411、HLA-C*07:412、HLA-C*07:413、HLA-C*07:414、HLA-C*07:415、HLA-C*07:416、HLA-C*07:417、HLA-C* 07:418, HLA-C*07:419, HLA-C*07:42, HLA-C*07:420, HLA-C*07:421, HLA-C*07:422, HLA-C*07:423, HLA-C*07:424, HLA-C*07:425, HLA-C*07:426, HLA-C*07:427, HLA-C*07:428, HLA-C*07:429, HLA-C*07:430, HLA-C*07:431, H LA-C*07:432、HLA-C*07:433、HLA-C*07:434、HLA-C*07:435、HL AC*07:436、HLA-C*07:437、HLA-C*07:438、HLA-C*07:439、HL AC*07:43:01、HLA-C*07:43:02、HLA-C*07:44、HLA-C*07:440、H LA-C*07:441:01、HLA-C*07:441:02、HLA-C*07:442、HLA-C*07:443、HLA-C*07:444、HLA-C*07:445、HLA-C*07:446, HLA-C*07:447, HLA-C*07:448, HLA-C*07:449, HLA-C*07:45, HLA-C*07:450, HLA-C*07:451, HLA-C*07:452, HLA-C*07:453, HLA-C*07:454:01, HLA-C*07:454:02, HLA-C*07:455, HLA-C*07:456, HLA-C*07:457, HLA-C*07:458, HLA-C*07:459, HLA-C*07:46, HLA-C*07:46060, HLA-C*07:460, HLA-C*07:460, HLA-C*07:460, HLA-C*07:460, HLA-C*07:460, HLA-C*07:460, HLA-C*07:460, HLA-C*07:460, HLA-C*07:46 LA-C*07:461, HLA-C*07:462, HLA-C*07:463, HLA-C*07:464, HL AC*07:465, HLA-C*07:466, HLA-C*07:467, HLA-C*07:468, HLA-C*07:469, HLA-C*07:47, HLA-C*07:470, HLA-C*07:471, HLA-C*07:472, HLA-C*07:473, HLA-C*07:474, HLA-C*07:475, HLA-C*07:476, HLA-C*07:4 77、HLA-C*07:478、HLA-C*07:479、HLA-C*07:48、HLA-C*07:480、HLA-C*07:481、HLA-C*07:482、HLA-C*07:483、HLA-C*07:484、HLA-C*07:485、HLA-C*07:486、HLA-C*07:487、HLA-C*07:488、HLA-C*07:489、HLA- C*07:49、HLA-C*07:490、HLA-C*07:491:01、HLA-C*07:491:02、HLA-C*07:492、HLA-C*07:493、HLA-C*07:494、HLA-C*07:495、HLA-C*07:496、HLA-C*07:497、HLA-C*07:498、HLA-C*07:499、HLA-C*07:50、HLA-C* 07:500, HLA-C*07:501, HLA-C*07:502, HLA-C*07:503, HLA-C*07:504, HLA-C*07:505, HLA-C*07:506, HLA-C*07:507, HLA-C*07:508, HLA-C*07:509, HLA-C*07:51, HLA-C*07:510, HLA-C*07:511, HLA-C*07:512,HLA-C*07:513、HLA-C*07:514、HLA-C*07:515、HLA-C*07:516、HLA-C*07:517、HLA-C*07:518、HLA-C*07:519、HLA-C*07:52、HLA-C*07:520、HLA-C*07:521:01、HLA-C*07:521:02、HLA-C*07:522、HLA-C*07:523、HLA-C*07:524、HLA-C*07:525、HLA-C*07:526、HLA-C*07:527、HLA-C*07:528、HLA-C*07:529 LA-C*07:526:01、HLA-C*07:526:02、HLA-C*07:527、HLA-C*07:528、HLA-C*07:529、HLA-C*07:53、HLA-C*07:530、HLA-C*07:531、HLA-C*07:532、HLA-C*07:533、HLA-C*07:534、HLA-C*07:535、H LA-C*07:536、HLA-C*07:537、HLA-C*07:538、HLA-C*07:539、HL AC*07:54, HLA-C*07:540, HLA-C*07:541, HLA-C*07:542, HLA-C*07:543, HLA-C*07:544, HLA-C*07:545, HLA-C*07:546, HLA-C*07:547, HLA-C*07:548, HLA-C*07:549, HLA-C*07:550, HLA-C*07:551, HLA-C*07:552, HLA-C*07:553, HLA-C*07:554, HLA-C*07 :555、HLA-C*07:556、HLA-C*07:557、HLA-C*07:558:01:01、HLA-C*07:558:01:02、HLA-C*07:559、HLA-C*07:55、HLA-C*07:560、HLA-C*07:561、HLA-C*07:562、HLA-C*07:563、HLA-C*07:564、HLA-C*07:565、HLA-C*07:566、HLA-C*07:567、HLA-C*07:568、H LA-C*07:569、HLA-C*07:56:01、HLA-C*07:56:02、HLA-C*07:57、HLA-C*07:570、HLA-C*07:571、HLA-C*07:572、HLA-C*07:573、HLA-C*07:574、HLA-C*07:575、HLA-C*07:576、HLA-C*07:577, HL AC*07:578, HLA-C*07:579, HLA-C*07:58, HLA-C*07:580, HLA-C*07:581, HLA-C*07:582, HLA-C*07:583, HLA-C*07:584, HLA-C*07:585, HLA-C*07:586, HLA-C*07:587, HLA-C*07:588, HLA-C*07:589, HLA-C*07:59, HLA-C*07:590, HLA-C*07:591, HLA-C*07:592, HLA-C*07:593, HLA-C*07:594, HLA- C*07:595, HLA-C*07:596, HLA-C*07:597, HLA-C*07:598, HLA-C*07:599, HLA-C*07:60, HLA-C*07:600:01, HLA-C*07:600:02, HLA-C*07:601, HLA-C*07:602, HLA-C*07:603, HLA-C*07:604, HLA-C*07:605, HLA-C*07:606, HLA-C*07:607, HLA-C*07:608, HLA-C*07:609, HLA-C*07:610, HLA-C*07:61 1. HLA-C*07:612, HLA-C*07:613, HLA-C*07:614, HLA-C*07:615, HLA-C*07:616, HLA-C*07:617, HLA-C*07:618, HLA-C*07:619, HLA-C*07:61, HLA-C*07:62, HLA-C*07:620, HLA-C*07:621, HLA-C*07:622, HLA-C*07:623, HLA-C*07:624, HLA-C*07:625, HLA-C*07:626, HLA-C*07:627, HLA-C*07:628 ,HLA-C*07:629,HLA-C*07:63,HLA-C*07:630,HLA-C*07:631,HLA-C*07:632,HLA-C*07:633,HLA-C*07:634,HLA-C*07:635,HLA-C*07:636,HLA-C*07:637,HLA-C*07:638,HLA-C*07:639,HLA-C*07:64,HLA-C*07:640,HLA-C*07:641,HLA-C*07:642,HLA-C*07:643,HLA-C*07:644,HLA-C*07:645,HLA-C*07:646, HLA-C*07:647, HLA-C*07:648, HLA-C*07:649, HLA-C*07:65, HLA-C*07:650:01, HLA-C*07:650:02, HLA-C*07:651, HLA-C*07:652, HLA-C*07:653, HLA-C*07:654, HLA-C*07:655, HLA-C*07:656, HLA-C*07:657, HLA-C*07:658, HLA-C*07:659, HLA-C*07:66, HLA-C*07:660, HLA-C*07:661 ,HLA-C*07:662,HLA-C*07:663,HLA-C*07:664,HLA-C*07:665,HLA-C*07:666,HLA-C*07:667,HLA-C*07:668,HLA-C*07:669,HLA-C*07:67,HLA-C*07:670,HLA-C*07:671,HLA-C*07:672,HLA-C*07:673,HLA-C*07:674,HLA-C*07:675,HLA-C*07:676,HLA-C*07:677,HLA-C*07:678,HLA-C*07:679,HLA -C*07:68, HLA-C*07:680, HLA-C*07:681, HLA-C*07:682:01:01, HLA-C*07:682:01:02, HLA-C*07:682:02, HLA-C*07:683, HLA-C*07:684, HLA-C*07:685, HLA-C*07:686, HLA-C*07:687, HLA-C*07:688, HLA-C*07:689, HLA-C*07:69, HLA-C*07:690, HLA-C*07:691, HLA-C*07:692, HLA-C*07:693, HLA-C* 07:694, HLA-C*07:695:01:01, HLA-C*07:695:01:02, HLA-C*07:696, HLA-C*07:697, HLA-C*07:698, HLA-C*07:699, HLA-C*07:70, HLA-C*07:700, HLA-C*07:701, HLA-C*07:702, HLA-C*07:703, HLA-C*07:704, HLA-C*07:705, HLA-C*07:706, HLA-C*07:707, HLA-C*07:708, HLA-C*07:709, HLA-C*07:71,HLA-C*07:710, HLA-C*07:711, HLA-C*07:712, HLA-C*07:713, HLA-C*07:714, HLA-C*07:715, HLA-C*07:716, HLA-C*07:7 17. HLA-C*07:718, HLA-C*07:719, HLA-C*07:72, HLA-C*07:720, HLA-C*07:721, HLA-C*07:722, HLA-C*07:723, HLA-C*07: 724, HLA-C*07:73:01, HLA-C*07:73:02, HLA-C*07:74, HLA-C*07:75, HLA-C*07:76:01, HLA-C*07:76:02, HLA-C*07:77, H LA-C*07:78:01, HLA-C*07:78:02, HLA-C*07:79, HLA-C*07:80, HLA-C*07:81, HLA-C*07:82, HLA-C*07:83, HLA-C*07:84, H LA-C*07:85, HLA-C*07:86, HLA-C*07:87, HLA-C*07:88, HLA-C*07:89, HLA-C*07:90, HLA-C*07:91, HLA-C*07:92, HLA -C*07:93, HLA-C*07:94, HLA-C*07:95, HLA-C*07:96:01, HLA-C*07:96:02, HLA-C*07:97, HLA-C*07:98 and HLA-C*07:99. ,
[0171] II.B.3. Bispecific T-cell receptor (TCR)
[0172] Certain aspects of this disclosure relate to a bispecific TCR comprising a first antigen-binding domain and a second antigen-binding domain, wherein the first antigen-binding domain comprises the TCR disclosed herein or its antigen-binding portion. In some embodiments, the first antigen-binding domain comprises a single-stranded variable fragment (“scFv”).
[0173] In some embodiments, the second antigen-binding domain specifically binds to proteins expressed on the surface of T cells. Any protein expressed on the surface of T cells can be targeted by the bispecific antibodies disclosed herein. In some embodiments, the protein expressed on the surface of T cells is not expressed by other cells. In some embodiments, the protein expressed on the surface of T cells is expressed on the surface of one or more other human immune cells. In some embodiments, the protein expressed on the surface of T cells is expressed on the surface of one or more other human immune cells, but not on the surface of human non-immune cells. In some embodiments, the second antigen-binding domain specifically binds to proteins selected from the group consisting of CD3, CD2, CD5, CD6, CD8, CD11a (LFA-1α), CD43, CD45, and CD53 expressed on the surface of T cells. In some embodiments, the second antigen-binding domain specifically binds to CD3. In some embodiments, the second antigen-binding domain includes scFv.
[0174] In some embodiments, the first antigen-binding domain and the second antigen-binding domain are linked or associated via covalent bonds. In some embodiments, the first antigen-binding domain and the second antigen-binding domain are linked via peptide bonds.
[0175] II.C. Cells expressing TCR
[0176] Certain aspects of this disclosure relate to cells comprising the nucleic acid molecules disclosed herein, the vectors disclosed herein, the recombinant TCRs disclosed herein, the bispecific TCRs disclosed herein, or any combination thereof. Any cell may be used in this disclosure.
[0177] In some embodiments, the cells express CD3. CD3 expression can be naturally occurring, for example, CD3 is expressed from a nucleic acid sequence that is endogenously expressed by the cell. For example, T cells and natural killer (NK) cells naturally express CD3. Therefore, in some embodiments, the cells are T cells or natural killer cells. In some embodiments, the cells are T cells selected from natural killer T (NKT) cells and innate lymphoid cells (ILCs).
[0178] In some implementations, the T cells are isolated from a human subject. In some implementations, the human subject is the same subject who will ultimately receive the T-cell therapy. In other implementations, the subject is a donor subject, wherein the donor subject is not the same subject who will receive the T-cell therapy.
[0179] In some embodiments, the cells are cells that do not naturally express CD3, wherein the cells have been modified to express CD3. In some embodiments, the cells contain a transgene encoding CD3, wherein the transgene is expressed by the cells. In some embodiments, the cells contain a transgene encoding a protein encoding endogenous CD3 expression in activated cells. In some embodiments, the cells contain a transgene encoding a protein or siRNA encoding a CD3 expression inhibitor in the cells. In some embodiments, the transgene is incorporated into the cell's genome. In some embodiments, the transgene is not incorporated into the cell's genome.
[0180] In some embodiments, the cells modified to express CD3 are isolated from a human subject. In some embodiments, the human subject is the same subject who will ultimately receive the cell therapy. In other embodiments, the subject is a donor subject, wherein the donor subject is not the same subject who will receive the cell therapy.
[0181] II.D.HLA Class I molecules
[0182] Certain aspects of this disclosure relate to an HLA class I molecule complexed with a peptide, wherein the peptide comprises the amino acid sequence listed in SEQ ID NO:13. In some embodiments, the peptide consists of the amino acid sequence listed in SEQ ID NO:13.
[0183] In some embodiments, HLA class I molecules are HLA-A, HLA-B, or HLA-C. In some embodiments, HLA class I molecules are HLA-E, HLA-F, or HLA-G. In some embodiments, HLA class 1 molecules are HLA-C alleles selected from the following: HLA-C*01, HLA-C*02, HLA-C*03, HLA-C*04, HLA-C*05, HLA-C*06, HLA-C*07, HLA-C*08, HLA-C*12, HLA-C*14, HLA-C*15, HLA-C*16, HLA-C*17, and HLA-C*18. In some embodiments, the HLA-C allele is the HLA-C*07:01 allele. In some embodiments, the HLA-C allele is the HLA-C*07:02 allele. In some embodiments, the HLA-C allele is the HLA-C*07:03 allele. In some embodiments, the HLA-C allele is the HLA-C*07:04 allele. In some embodiments, the HLA-C allele is the HLA-C*07:05 allele. In some embodiments, the HLA-C allele is the HLA-C*07:06 allele. In some embodiments, the HLA-C allele is the HLA-C*07:07 allele. In some embodiments, the HLA-C allele is the HLAC*07:08 allele. In some embodiments, the HLA allele is any HLA allele disclosed herein, such as those described above.
[0184] In some embodiments, the HLA class I molecule comprises an α chain and a β2m. In some embodiments, the α chain comprises an α1 domain, an α2 domain, and an α3 domain. In some embodiments, the β2m comprises an amino acid sequence having at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% sequence identity with the amino acid sequence listed in SEQ ID NO:16. In some embodiments, the sequence of the α chain is selected from any of the HLA protein sequences available at hla.alleles.org (last accessed February 27, 2019).
[0185] In some embodiments, HLA class I molecules are monomers. In some embodiments, HLA class I molecules are dimers. In some embodiments, HLA class I molecules are polymers. In some embodiments, HLA class I molecules are trimers. In some embodiments, HLA class I molecules are tetramers. In some embodiments, HLA class I molecules are pentamers.
[0186] Certain aspects of this disclosure relate to antigen-presenting cells (APCs) that contain any of the HLA class I molecules disclosed herein. In some embodiments, the APC expresses an HLA class I molecule on its surface. In some embodiments, the APC contains more than one HLA class I molecule disclosed herein.
[0187] II.D. vaccine
[0188] Certain aspects of this disclosure relate to a cancer vaccine comprising a peptide having an amino acid sequence as listed in SEQ ID NO:13. In some embodiments, the cancer vaccine comprises a peptide consisting of an amino acid sequence listed in SEQ ID NO:13. In some embodiments, the vaccine further comprises one or more excipients. In some embodiments, the vaccine further comprises one or more other peptides. In some embodiments, the one or more other peptides comprise one or more other epitopes.
[0189] III. The Method of This Disclosure
[0190] Some aspects of this disclosure relate to methods for treating cancer in subjects of need. Other aspects of this disclosure relate to methods for engineering cells that target antigens. Still other aspects of this disclosure relate to methods for enriching target T cell populations obtained from human subjects.
[0191] III.A. Methods of Treating Cancer
[0192] Certain aspects of this disclosure relate to methods for treating cancer in a subject in need, the methods comprising administering to the subject a nucleic acid molecule disclosed herein, a recombinant TCR disclosed herein, a bispecific TCR disclosed herein, an epitope disclosed herein, or an HLA class I molecule disclosed herein, or a vector or cell comprising any of the above.
[0193] In some implementation schemes, the cancer is selected from melanoma, bone cancer, kidney cancer, prostate cancer, breast cancer, colon cancer, lung cancer, cutaneous or ocular malignant melanoma, pancreatic cancer, skin cancer, head and neck cancer, uterine cancer, ovarian cancer, rectal cancer, anal cancer, gastric cancer, testicular cancer, uterine cancer, fallopian tube cancer, endometrial cancer, cervical cancer, vaginal cancer, vulvar cancer, Hodgkin's disease, non-Hodgkin's lymphoma (NHL), primary mediastinal large B-cell lymphoma (PMBC), diffuse large B-cell lymphoma (DLBCL), follicular lymphoma (FL), transformed follicular lymphoma, splenic marginal zone lymphoma (SMZL), esophageal cancer, small bowel cancer, endocrine system cancer, thyroid cancer, parathyroid cancer, and adrenal cancer. Cancer, soft tissue sarcoma, urethral cancer, penile cancer, chronic or acute leukemia, acute myeloid leukemia (AML), chronic myeloid leukemia, acute lymphoblastic leukemia (ALL) (including non-T-cell ALL), chronic lymphocytic leukemia (CLL), childhood solid tumors, lymphocytic lymphoma, bladder cancer, kidney or ureter cancer, renal pelvis tumor, central nervous system (CNS) spurs, primary CNS lymphoma, tumor angiogenesis, spinal axis tumors, brainstem gliomas, pituitary adenomas, Kaposi's sarcoma, epidermoid carcinoma, squamous cell carcinoma, T-cell lymphoma, environmentally induced cancers (including those induced by asbestos), other B-cell malignancies, and combinations of the aforementioned cancers. In some embodiments, the cancer is melanoma.
[0194] In some implementations, the cancer is recurrent. In some implementations, the cancer is refractory. In some implementations, the cancer is advanced. In some implementations, the cancer is metastatic.
[0195] In some embodiments, the methods disclosed herein treat a subject's cancer. In some embodiments, the methods disclosed herein reduce the severity of one or more cancer symptoms. In some embodiments, the methods disclosed herein reduce the size or number of tumors originating from cancer. In some embodiments, the methods disclosed herein increase a subject's overall survival relative to a subject not provided with the methods disclosed herein. In some embodiments, the methods disclosed herein increase a subject's progression-free survival relative to a subject not provided with the methods disclosed herein. In some embodiments, the methods disclosed herein elicit a partial response in a subject. In some embodiments, the methods disclosed herein elicit a complete response in a subject.
[0196] In some embodiments, the methods disclosed herein include treating a subject with cancer, including administering the subject cells described herein, wherein the cells comprise the nucleic acid molecules disclosed herein, the vectors disclosed herein, the recombinant TCRs disclosed herein, and / or the bispecific antibodies disclosed herein. In some embodiments, the cells are T cells. In some embodiments, the cells are cells modified to express CD3.
[0197] In some embodiments, the cells (e.g., T cells) are obtained from the subject. In some embodiments, the cells (e.g., T cells) are obtained from a donor other than the subject.
[0198] In some embodiments, the subject is pretreated prior to cell administration. Pretreatment may include any substance that contributes to T cell function and / or survival. In some embodiments, pretreatment includes administering chemotherapy, cytokines, proteins, small molecules, or any combination thereof to the subject. In some embodiments, pretreatment includes administering interleukins. In some embodiments, pretreatment includes administering IL-2, IL-4, IL-7, IL-9, IL-15, IL-21, or any combination thereof. In some embodiments, pretreatment includes administering cyclophosphamide, fludarabine, or both. In some embodiments, pretreatment includes administering vitamin C, AKT inhibitors, ATRA (vesanoid), rapamycin, or any combination thereof.
[0199] III.B. Methods for engineering cells targeting antigens
[0200] Certain aspects of this disclosure relate to methods for engineering cells targeting an antigen. In some embodiments, the antigen is the gp100 antigen. In some embodiments, the method includes transducing cells with a nucleic acid molecule or a vector disclosed herein. The cells may be any cells described herein. In some embodiments, the cells are T cells as described herein. In some embodiments, the cells are cells modified to express CD3 as described herein. In some embodiments, the cells (e.g., T cells) are obtained from a subject requiring T cell therapy. In some embodiments, the cells are obtained from a donor other than a subject requiring T cell therapy. In some embodiments, the cells are T cells or natural killer cells.
[0201] III.C. Methods for enriching target T cell populations
[0202] Certain aspects of this disclosure relate to methods for enriching a population of target T cells obtained from human subjects. In some embodiments, the method includes contacting T cells with HLA class I molecules disclosed herein. In some embodiments, the method includes contacting T cells with APCs disclosed herein. In some embodiments, after contact, the enriched population of T cells contains a higher number of T cells capable of binding HLA class I molecules compared to the number of T cells capable of binding HLA class I molecules prior to contact.
[0203] In some embodiments, the method includes contacting T cells in vitro with a peptide, wherein the peptide comprises the amino acid sequence listed in SEQ ID NO:13. In some embodiments, the method includes contacting T cells in vitro with a peptide, wherein the peptide consists of the amino acid sequence listed in SEQ ID NO:13. In some embodiments, after contact, the enriched T cell population comprises a higher number of T cells capable of binding HLA class I molecules compared to the number of T cells capable of binding HLA class I molecules before contact.
[0204] Some aspects of this disclosure relate to a method for selecting T cells capable of targeting tumor cells. In some embodiments, the method includes contacting a population of isolated T cells in vitro with a peptide, said peptide consisting of an amino acid sequence as listed in SEQ ID NO:13. In some embodiments, the T cells are obtained from a human subject.
[0205] The T cells obtained from human subjects can be any T cells disclosed herein. In some embodiments, the T cells obtained from human subjects are tumor-infiltrating lymphocytes (TILs).
[0206] In some embodiments, the method further includes administering enriched T cells to a human subject. In some embodiments, as described herein, the subject is pretreated prior to receiving the T cells.
[0207] All aspects, implementation schemes, and options described in this article can be combined in any and all variations.
[0208] All publications, patents and patent applications mentioned in this specification are incorporated herein by reference to the extent that each individual publication, patent or patent application is specifically and individually indicated to be incorporated by reference.
[0209] Having generally described the invention, further understanding can be obtained by referring to the embodiments provided herein. These embodiments are for illustrative purposes only and are not intended to be limiting.
[0210] Example
[0211] Example 1
[0212] TILs were isolated from patients with metastatic melanoma, followed by polyclonal expansion in vitro, and their gp100 antigen specificity against the HLA-C*07:01 allele was examined. A combination of structure-based and functional analyses using peptide / HLA (pHLA) multimers was used to measure Ag-specific T cell responses.
[0213] Since pHLA multimer production requires peptides with known and precise sequences, using pHLA multimer-based strategies for high-throughput screening of novel epitope peptides is neither direct nor practical. In addition to structure-based analyses using pHLA multimers, functional analyses can be applied to determine T-cell antigen specificity. Functional analyses were performed using artificial antigen-presenting cells (APCs) that can process and manufacture longer peptides and act as stimulators to present epitope peptides via class I molecules. C*07:01-artificial APCs were pulsed with overlapping peptides (Table 5) covering the full protein of gp100 and used as stimulators in the cytokine ELISPOT assay. After a single controlled stimulation with C*07:01-artificial APCs pulsed with overlapping peptides derived from gp100, C*07:01 showed significant differences in antigen specificity in the IFN-γ ELISPOT assay. + Melanoma TILs show pairs with shared sequences 476 VLYRYGSFSVTLDIV 490 Positive response of two adjacent peptides ( Figure 1 Using a series of mutant deletion peptides, the minimum required peptide epitopes presented by the C*07:01 molecule were identified. 479 RYGSFSVTL 487 HLA-C*07:01 / gp100 was identified. 479-487 T cells, which constitute CD8+ in polyclonal expanded TILs + 0.14% of T cells (Figure 2). After one controlled peptide-specific stimulation with C*07:01-artificial APC, C*07:01 / gp100 479-487 The frequency of T cells increased to 1.2%, ruling out the possibility of a false positive due to a low staining percentage (Figure 2). According to ELISPOT analysis, multimer-positive T cells secreted detectable IFN-γ in an HLA-restricted peptide-specific manner. Figure 3 ).
[0214] Table 5. gp100 overlapping peptides.
[0215]
[0216]
[0217]
[0218] Multimer-positive anti-tumor T cells were collected and their TCR genes were molecularly cloned (Figure 4, SEQ ID NO: 1 and 2). The antigen specificity and functional reactivity of the cloned TCRs were validated by multimer staining and ELISPOT assay of TCR-reconstructed T cells. When based on primary T cell reconstruction, C*07:01 / gp100 479-487 TCR-transduced T cells were successfully stained in the homologous multimer condition (Figure 5) and correlated with gp100 presented by surface C*07:01 molecules. 479-487 Peptide strong reaction ( Figure 6 Importantly, these cells were able to recognize tumor cells that naturally express the gp100 gene and are C*07:01-matched and have not undergone peptide pulse treatment (Figure 7). Although ACHN melanoma cells are gp100-negative, they endogenously express the HLA-C*07:01 gene. When the gp100 gene is ectopically expressed, melanoma cells are characterized by C*07:01 / gp100... 479-487 TCR-transduced T cells were successfully recognized. Furthermore, A375 melanoma cells lacking endogenous expression of C*07:01 and gp100 became C*07:01 / gp100 resistant only upon transduction of either the C*07:01 or gp100 gene (but not either gene alone). 479-487 TCR-transduced T cells are reactive (Figures 7-9). These results clearly confirm that C*07:01 / gp100 479-487 TCR-transduced T cells are highly enthusiastic about recognizing tumor cells and are cloned C*07:01 / gp100 479-487 TCR is tumor-responsive.
[0219] Gp100 is one of the promising and well-studied common antigens in bispecific T-cell connective (BiTE) therapy, and clinical trials targeting gp100 have been conducted in patients with metastatic uveal melanoma using IMCgp100, a bispecific bispecific biopharmaceutical containing a soluble TCR that recognizes the gp100 antigen and is fused to scFv anti-CD3, thereby redirecting T-cell lysis of gp100-expressing melanoma cells in the presence of the HLA-A*02:01 molecule. The use of a newly cloned tumor-reactive C*07:01-restricted gp100 TCR gene could broaden the applicability of gp100-targeting BiTE therapy beyond HLA-A*02:01-positive cancer patients.
[0220] method
[0221] Cell samples
[0222] Peripheral blood samples were obtained from healthy donors after approval by the institutional review board. Monocytes were obtained by density gradient centrifugation (Ficoll-Paque PLUS; GE Healthcare). K562 is an erythroleukemia cell line with defective HLA expression. Jurkat 76 is a T-cell leukemia cell line lacking TCR and CD8 expression. The ACHN cell line was grown in EMEM supplemented with 10% FBS and 50 μg / ml gentamicin. The A375 cell line was grown in DMEM supplemented with 10% FBS and 50 μg / ml gentamicin. The K562 and Jurkat 76 cell lines were cultured in RPMI 1640 supplemented with 10% FBS and 50 μg / ml gentamicin. TILs isolated from metastatic melanoma patients were grown in vitro.
[0223] peptides
[0224] The synthetic peptides were dissolved in DMSO to a concentration of 50 μg / ml. The peptides used were 20-mer overlapping peptides used to cover the full protein of gp100 (Table 1) and C*07:01-restricted gp100. 479-487 (RYGSFSVTL; SEQ ID NO:13), gp100 479-486 (RYGSFSVT; SEQ ID NO:194) and HIV nef 105-115 (KRQDILDLWVY; SEQ ID NO:63) peptide. Using gp100 479-486 and HIV nef 105-115 Peptides were used as negative controls.
[0225] Gene
[0226] The HLA-C*07:01 gene was fused to a truncated form of human nerve growth factor receptor (ΔNGFR) via an internal ribosome entry site. ΔNGFR-transduced cells were isolated using an anti-NGFR monoclonal antibody (mAb). The full-length gp100 gene was purchased from Dharmacon (Lafayette, CO). The TCR gene was cloned using the SMARTer RACE cDNA amplification kit (Takara Bio) via 5'-terminal rapid amplification (RACE) PCR. The 5'-RACE PCR product was cloned into a retroviral vector and sequenced. All genes were cloned into the pMX retroviral vector and transduced using a 293GPG cell-based retroviral system.
[0227] transfectants
[0228] As previously reported, Jurkat 76 / CD8 cells were transduced with individual TCRα and TCRβ genes. 42-44 TCR transfectants derived from Jurkat 76 / CD8 were purified (>95% purity) using CD3 microbeads (Miltenyi Biotec). Previously, K562-based artificial APCs have been reported to express various HLA class I genes as single HLA alleles bound to CD80 and CD83 (Butler and Hirano, Immunol. Rev. 257:191-209 (2014); Hirano et al., Clin. Cancer Res. 12:2967-75 (2006)). The TCR gene was transduced into human primary T cells using retroviral supernatant derived from PG13. The TCR gene was transfected into the 293GPG cell line using TransIT293 (Mirus Bio). Gp100 was transduced using a full-length gp100 gene retrovirus. - ACHN and A375 cells were used to generate ACHN / gp100 and A375 / gp100. The expression of transduced gp100 was assessed by flow cytometry after staining with anti-gp100 mAb (clone 7E3; LifeSpan Biosciences). HLA-C*07:01 retrovirus was used for transduction. - A375 cells were used to generate A375 / C*07:01 cells. The HLA-C*07:01 gene was labeled with the ΔNGFR gene as described above, and the ΔNGFR... + Cells were purified (>95% purity) and used in subsequent experiments. Retroviral transduction of the ΔNGFR gene alone served as a control.
[0229] Flow cytometry and cell sorting
[0230] Cell surface molecules were stained with PC5-conjugated anti-CD8 mAb (clone B9.11; Beckman Coulter), FITC-conjugated anti-NGFR (clone ME20.4; Biolegend), and APC / Cy7-conjugated anti-CD3 (clone UCHT1; Biolegend). Dead cells were identified using the LIVE / DEAD Fixable Aqua Dead Cell Stainkit (Life Technologies). For intracellular staining, cells were fixed and permeabilized using the Cytofix / Cytoperm kit (BD Biosciences). Stained cells were analyzed by flow cytometry (BD Biosciences), and data were analyzed using FlowJo (Tree Star). Cell sorting was performed using FACS Aria II (BD Biosciences).
[0231] Cytokine ELISPOT Analysis
[0232] IFN-γ ELISPOT assay was performed. PVDF plates (Millipore, Bedford, MA) were coated with capture mAbs (1-D1K; MABTECH, Mariemont, OH), and T cells were added to each well with 2 x 10⁻⁶ cells in the presence or absence of the peptide. 4 The target cells were incubated together at 37°C for 20–24 hours. The plate was then washed and incubated with a biotin-conjugated detection mAb (7-B6-1; MABTECH). HRP-conjugated SA (Jackson ImmunoResearch) was then added to visualize the IFN-γ spots. The reaction was stopped by thorough rinsing with cold tap water. The ELISPOT plate was scanned and counted using an ImmunoSpot reader and ImmunoSpot version 5.0 software (Cellular Technology Limited, Shaker Heights, OH).
[0233] CD8 + TIL is amplified in a HLA-restricted peptide-specific manner.
[0234] Use CD8 + T-cell separation kit (Miltenyi Biotec) uses negative magnetic selection to separate CD8 cells. +TIL purification. C*07:01-artificial APC was pulsed with 10 μg / mL gp100 peptide for 6 hours. The artificial APC was then irradiated at 200 Gy, washed, and added to the TIL at an effector to target (E:T) ratio of 20:1. Starting from day two, 10 IU / ml IL-2 (Novartis), 10 ng / ml IL-15 (Peprotech), and 30 ng / ml IL-21 (Peprotech) were added to the culture every three days.
[0235] Primary CD8 transduced using cloned TCR + T cell expansion
[0236] CD3 cells were isolated using a whole T-cell isolation kit (Miltenyi Biotec) via negative magnetic selection. + T cell purification. Purified T cells were stimulated with artificial APC / mOKT3 irradiated with 200 Gy at an E:T ratio of 20:1. Starting from the second day, activated T cells were transduced with a cloned TCR gene retrovirus after centrifugation at 1,000 g for 1 hour at 32°C for 3 consecutive days. On the second day, 100 IU / ml IL-2 and 10 ng / ml IL-15 were added to the TCR-transduced T cells. Culture medium was replenished every 2-3 days.
[0237] Based on the generation of pHLA polymers in human cells
[0238] HLA class I genetically engineered mice to carry a Glu(E) residue replacing the Gln(Q) residue at position 115 of the α2 domain and a mouse K gene replacing the HLA class I α3 domain. b The gene-derived α3 domain. Soluble HLA class I genes were generated by sequentially fusing the extracellular domain of affinity-matured HLA class I genes with a Gly-Ser (GS) flexible linker and a 6x His tag. Q115E -K b Genes. Using a 293GPG cell-based retroviral system with various soluble HLA class I... Q115E -K b The gene and β2m gene were individually transduced into HEK293T cells. This facilitated the ectopic expression of soluble affinity maturation in category I cells. Q115E -K b Stable HEK293T cells were grown until confluence, and then the culture medium was changed. After 48 hours, the conditioned medium was harvested and used immediately or frozen until use. The HEK293T transfectants were used to produce cells containing soluble HLA class I... Q115E -K bThe supernatant was mixed with 100-1000 μg / ml of the target class I restriction peptide overnight at 37°C for in vitro peptide exchange. Soluble class I peptide-loaded monomers were then exchanged using an anti-His mAb (clone AD1.1.10; Abcam) conjugated to a fluorescent dye such as phycoerythrin (PE) at a 2:1 molar ratio. Q115E -K b Dimerization was carried out for 2 hours at room temperature or overnight at 4°C. Functional soluble HLA class I mAbs (clone W6 / 32, internal) and anti-His-tagged biotinylated mAbs (clone AD1.1.10, R&Dsystems) were used as capture and detection abs, respectively, by specific ELISA to measure functional soluble HLA class I. Q115E -K b Molecular concentration.
[0239] pHLA polymer staining
[0240] In the presence of 50 nM dasatinib (LC laboratories), T cells (1x10) 5 Incubate at 37°C for 30 minutes. Then wash the cells and incubate with 5-10 μg / ml of polymer at room temperature for 30 minutes, followed by inoculation with R-phycoerythrin-conjugated AffiniPure Fab fragment goat anti-mouse IgG1 (Jackson Immuno Research Laboratories) at 4°C for 15 minutes. Next, wash the cells three times and co-stain with anti-CD8 mAb at 4°C for 15 minutes. Finally, use a live / dead fixable dead cell staining kit to identify dead cells.
[0241] Statistical analysis
[0242] Statistical analysis was performed using GraphPad Prism 5.0e. To determine whether the given variables were significantly different between the two groups, Welch's t-test (two-tailed) was used. A p-value < 0.05 was considered significant. sequence list <110> University Health Network <120> T-cell receptors and their usage <130> 4285.006PC01 / C-K / BMD <150> US 62 / 813,650 <151> 2019-03-04 <160> 194 <170> PatentIn version 3.5 <210> 1 <211> 279 <212> PRT <213> Artificial Sequence <220> <223> Amino acid sequence of α chain <400> 1 Met Ala Met Leu Leu Gly Ala Ser Val Leu Ile Leu Trp Leu Gln Pro 1 5 10 15 Asp Trp Val Asn Ser Gln Gln Lys Asn Asp Asp Gln Gln Val Lys Gln 20 25 30 Asn Ser Pro Ser Leu Ser Val Gln Glu Gly Arg Ile Ser Ile Leu Asn 35 40 45 Cys Asp Tyr Thr Asn Ser Met Phe Asp Tyr Phe Leu Trp Tyr Lys Lys 50 55 60 Tyr Pro Ala Glu Gly Pro Thr Phe Leu Ile Ser Ile Ser Ser Ile Lys 65 70 75 80 Asp Lys Asn Glu Asp Gly Arg Phe Thr Val Phe Leu Asn Lys Ser Ala 85 90 95 Lys His Leu Ser Leu His Ile Val Pro Ser Gln Pro Gly Asp Ser Ala 100 105 110 Val Tyr Phe Cys Ala Ala Asn Ser Gly Asn Thr Pro Leu Val Phe Gly 115 120 125 Lys Gly Thr Arg Leu Ser Val Ile Ala Asn Ile Gln Asn Pro Asp Pro 130 135 140 Ala Val Tyr Gln Leu Arg Asp Ser Lys Ser Ser Asp Lys Ser Val Cys 145 150 155 160 Leu Phe Thr Asp Phe Asp Ser Gln Thr Asn Val Ser Gln Ser Lys Asp 165 170 175 Ser Asp Val Tyr Ile Thr Asp Lys Thr Val Leu Asp Met Arg Ser Met 180 185 190 Asp Phe Lys Ser Asn Ser Ala Val Ala Trp Ser Asn Lys Ser Asp Phe 195 200 205 Ala Cys Ala Asn Ala Phe Asn Asn Ser Ile Ile Pro Glu Asp Thr Phe 210 215 220 Phe Pro Ser Pro Glu Ser Ser Cys Asp Val Lys Leu Val Glu Lys Ser 225 230 235 240 Phe Glu Thr Asp Thr Asn Leu Asn Phe Gln Asn Leu Ser Val Ile Gly 245 250 255 Phe Arg Ile Leu Leu Leu Lys Val Ala Gly Phe Asn Leu Leu Met Thr 260 265 270 Leu Arg Leu Trp Ser Ser Glx 275 <210> 2 <211> 311 <212> PRT <213> Artificial Sequence <220> <223> Amino acid sequence of β-chain <400> 2 Met Asp Thr Trp Leu Val Cys Trp Ala Ile Phe Ser Leu Leu Lys Ala 1 5 10 15 Gly Leu Thr Glu Pro Glu Val Thr Gln Thr Pro Ser His Gln Val Thr 20 25 30 Gln Met Gly Gln Glu Val Ile Leu Arg Cys Val Pro Ile Ser Asn His 35 40 45 Leu Tyr Phe Tyr Trp Tyr Arg Gln Ile Leu Gly Gln Lys Val Glu Phe 50 55 60 Leu Val Ser Phe Tyr Asn Asn Glu Ile Ser Glu Lys Ser Glu Ile Phe 65 70 75 80 Asp Asp Gln Phe Ser Val Glu Arg Pro Asp Gly Ser Asn Phe Thr Leu 85 90 95 Lys Ile Arg Ser Thr Lys Leu Glu Asp Ser Ala Met Tyr Phe Cys Ala 100 105 110 Ser Ser Leu Met Gly Gly Gly Asn Thr Ile Tyr Phe Gly Glu Gly Ser 115 120 125 Trp Leu Thr Val Val Glu Asp Leu Asn Lys Val Phe Pro Pro Glu Val 130 135 140 Ala Val Phe Glu Pro Ser Glu Ala Glu Ile Ser His Thr Gln Lys Ala 145 150 155 160 Thr Leu Val Cys Leu Ala Thr Gly Phe Phe Pro Asp His Val Glu Leu 165 170 175 Ser Trp Trp Val Asn Gly Lys Glu Val His Ser Gly Val Ser Thr Asp 180 185 190 Pro Gln Pro Leu Lys Glu Gln Pro Ala Leu Asn Asp Ser Arg Tyr Cys 195 200 205 Leu Ser Ser Arg Leu Arg Val Ser Ala Thr Phe Trp Gln Asn Pro Arg 210 215 220 Asn His Phe Arg Cys Gln Val Gln Phe Tyr Gly Leu Ser Glu Asn Asp 225 230 235 240 Glu Trp Thr Gln Asp Arg Ala Lys Pro Val Thr Gln Ile Val Ser Ala 245 250 255 Glu Ala Trp Gly Arg Ala Asp Cys Gly Phe Thr Ser Val Ser Tyr Gln 260 265 270 Gln Gly Val Leu Ser Ala Thr Ile Leu Tyr Glu Ile Leu Leu Gly Lys 275 280 285 Ala Thr Leu Tyr Ala Val Leu Val Ser Ala Leu Val Leu Met Ala Met 290 295 300 Val Lys Arg Lys Asp Phe Glx 305 310 <210> 3 <400> 3 000 <210> 4 <400> 4 000 <210> 5 <211> 6 <212> PRT <213> Artificial Sequence <220> <223> NSMFDY <400> 5 Asn Ser Met Phe Asp Tyr 1 5 <210> 6 <211> 5 <212> PRT <213> Artificial Sequence <220> <223> α CDR2 <400> 6 Ser Asn His Leu Tyr 1 5 <210> 7 <211> 12 <212> PRT <213> Artificial Sequence <220> <223> α CDR3 <400> 7 Cys Ala Ala Asn Ser Gly Asn Thr Pro Leu Val Phe 1 5 10 <210> 8 <211> 7 <212> PRT <213> Artificial Sequence <220> <223> β CDR1 <400> 8 Ile Ser Ser Ile Lys Asp Lys 1 5 <210> 9 <211> 6 <212> PRT <213> Artificial Sequence <220> <223> β CDR2 <400> 9 Phe Tyr Asn Asn Glu Ile 1 5 <210> 10 <211> 14 <212> PRT <213> Artificial Sequence <220> <223> β CDR3 <400> 10 Cys Ala Ser Ser Leu Met Gly Gly Gly Asn Thr Ile Tyr Phe 1 5 10 <210> 11 <400> 11 000 <210> 12 <400> 12 000 <210> 13 <211> 9 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 13 Arg Tyr Gly Ser Phe Ser Val Thr Leu 1 5 <210> 14 <400> 14 000 <210> 15 <400> 15 000 <210> 16 <211> 119 <212> PRT <213> Artificial Sequence <220> <223> B2m Amino Acid Sequence <400> 16 Met Ser Arg Ser Val Ala Leu Ala Val Leu Ala Leu Leu Ser Leu Ser 1 5 10 15 Gly Leu Glu Ala Ile Gln Arg Thr Pro Lys Ile Gln Val Tyr Ser Arg 20 25 30 His Pro Ala Glu Asn Gly Lys Ser Asn Phe Leu Asn Cys Tyr Val Ser 35 40 45 Gly Phe His Pro Ser Asp Ile Glu Val Asp Leu Leu Lys Asn Gly Glu 50 55 60 Arg Ile Glu Lys Val Glu His Ser Asp Leu Ser Phe Ser Lys Asp Trp 65 70 75 80 Ser Phe Tyr Leu Leu Tyr Tyr Thr Glu Phe Thr Pro Thr Glu Lys Asp 85 90 95 Glu Tyr Ala Cys Arg Val Asn His Val Thr Leu Ser Gln Pro Lys Ile 100 105 110 Val Lys Trp Asp Arg Asp Met 115 <210> 17 <211> 837 <212> DNA <213> Artificial Sequence <220> <223> Nucleotide sequence of α chain <400> 17 atggccatgc tcctgggggc atcagtgctg attctgtggc ttcagccaga ctgggtaaac 60[[ID=十四]] [[ID=十五]]agtcaacaga agaatgatga ccagcaagtt aagcaaaatt caccatccct gagcgtccag 120[[ID=十六]] [[ID=十七]]gaaggaagaa tttctattct gaactgtgac tatactaaca gcatgtttga ttatttccta 180[[ID=十八]] [[ID=十九]]tggtacaaaa aataccctgc tgaaggtcct acattcctga tatctataag ttccattaag 240[[ID=二十]] [[ID=二十一]]gataaaaatg aagatggaag attcactgtc ttcttaaaca aaagtgccaa gcacctctct 300[[ID=二十二]] [[ID=二十三]]ctgcacattg tgccctccca gcctggagac tctgcagtgt acttctgtgc agcaaattca 360[[ID=二十四]] [[ID=二十五]]ggaaacacac ctcttgtctt tggaaagggc acaagacttt ctgtgattgc aaatatccag 420[[ID=二十六]] [[ID=二十七]]aaccctgacc ctgccgtgta ccagctgaga gactctaaat ccagtgacaa gtctgtctgc 480[[ID=二十八]] [[ID=二十九]]ctattcaccg attttgattc tcaaacaaat gtgtcacaaa gtaaggattc tgatgtgtat 540[[ID=三十]] [[ID=三十一]]atcacagaca aaactgtgct agacatgagg tctatggact tcaagagcaa cagtgctgtg 600[[ID=三十二]] It should be noted that there may be some inaccuracies in the above translation for the lack of clear semantic context. It is recommended to further optimize and adjust according to the actual situation.gcctggagca acaaatctga ctttgcatgt gcaaacgcct tcaacaacag cattattcca 660 gaagacacct tcttccccag cccagaaagt tcctgtgatg tcaagctggt cgagaaaagc 720 tttgaaacag atacgaacct aaactttcaa aacctgtcag tgattgggtt ccgaatcctc 780 ctcctgaaag tggccgggtt taatctgctc atgacgctgc ggctgtggtc cagctga 837 <210> 18 <211> 933 <212> DNA <213> Artificial Sequence <220> <223> β-chain nucleotide sequence <400> 18 atggatacct ggctcgtatg ctgggcaatt tttagtctct tgaaagcagg actcacagaa 60 cctgaagtca cccagactcc cagccatcag gtcacacaga tgggacagga agtgatcttg 120 cgctgtgtcc ccatctctaa tcacttatac ttctattggt acagacaaat cttggggcag 180 aaagtcgagt ttctggtttc cttttataat aatgaaatct cagagaagtc tgaaatattc 240 gatgatcaat tctcagttga aaggcctgat ggatcaaatt tcactctgaa gatccggtcc 300 acaaagctgg aggactcagc catgtacttc tgtgccagca gtttgatggg aggtggaaac 360 accatatatt ttggagaggg aagttggctc actgttgtag aggacctgaa caaggtgttc 420 480. cccccgagg tcgctgtgtt tgagccatca gaagcagaga tctcccacac ccaaaaggcc acactggtgt gcctggccac aggcttcttc cctgaccacg tggagctgag ctggtgggtg 540 aatgggaagg aggtgcacag tggggtcagc acggacccgc agcccctcaa ggagcagccc 600. gccctcaatg actccagata ctgcctgagc agccgcctga gggtctcggc caccttctgg 660 cagaacccc gcaaccactt ccgctgtcaa gtccagttct acgggctctc ggagaatgac gagtggaccc aggatagggc caaacccgtc acccagatcg tcagcgccga ggcctggggt 780 840. gtggcttc gtggcttcc ctcggtgtcc gggtcctgtc tgccaccatc ctctatgaga tcctgctagg gaaggccacc ctgtatgctg tgctggtcag cgcccttgtg 900 ttgatggcca tggtcaagag aaaggatttc tga <210> 19 <400> 19 000 <210> 20 <400> 20 000 <210> 21 <400> 21 000 <210> 22 <400> 22 000 <210> 23 <400> 23 000 <210> 24 <400> 24 000 <210> 25 <400> 25 000 <210> 26 <400> 26 000 <210> 27 <400> 27 000 <210> 28 <400> 28 000 <210> 29 <400> 29 000 <210> 30 <400> 30 000 <210> 31 <400> 31 000 <210> 32 <400> 32 000 <210> 33 <400> 33 000 <210> 34 <400> 34 000 <210> 35 <400> 35 000 <210> 36 <400> 36 000 <210> 37 <400> 37 000 <210> 38 <400> 38 000 <210> 39 <400> 39 000 <210> 40 <400> 40 000 <210> 41 <400> 41 000 <210> 42 <400> 42 000 <210> 43 <400> 43 000 <210> 44 <400> 44 000 <210> 45 <400> 45 000 <210> 46 <400> 46 000 <210> 47 <400> 47 000 <210> 48 <400> 48 000 <210> 49 <400> 49 000 <210> 50 <400> 50 000 <210> 51 <400> 51 000 <210> 52 <211> 661 <212> PRT <213> Artificial Sequence <220> <223> gp100 amino acid sequence <400> 52 Met Asp Leu Val Leu Lys Arg Cys Leu Leu His Leu Ala Val Ile Gly 1 5 10 15 Ala Leu Leu Ala Val Gly Ala Thr Lys Val Pro Arg Asn Gln Asp Trp 20 25 30 Leu Gly Val Ser Arg Gln Leu Arg Thr Lys Ala Trp Asn Arg Gln Leu 35 40 45 Tyr Pro Glu Trp Thr Glu Ala Gln Arg Leu Asp Cys Trp Arg Gly Gly 50 55 60 Gln Val Ser Leu Lys Val Ser Asn Asp Gly Pro Thr Leu Ile Gly Ala 65 70 75 80 Asn Ala Ser Phe Ser Ile Ala Leu Asn Phe Pro Gly Ser Gln Lys Val 85 90 95 Leu Pro Asp Gly Gln Val Ile Trp Val Asn Asn Thr Ile Ile Asn Gly 100 105 110 Ser Gln Val Trp Gly Gly Gln Pro Val Tyr Pro Gln Glu Thr Asp Asp 115 120 125 Ala Cys Ile Phe Pro Asp Gly Gly Pro Cys Pro Ser Gly Ser Trp Ser 130 135 140 Gln Lys Arg Ser Phe Val Tyr Val Trp Lys Thr Trp Gly Gln Tyr Trp 145 150 155 160 Gln Val Leu Gly Gly Pro Val Ser Gly Leu Ser Ile Gly Thr Gly Arg 165 170 175 Ala Met Leu Gly Thr His Thr Met Glu Val Thr Val Tyr His Arg Arg 180 185 190 Gly Ser Arg Ser Tyr Val Pro Leu Ala His Ser Ser Ser Ala Phe Thr 195 200 205 Ile Thr Asp Gln Val Pro Phe Ser Val Ser Val Ser Gln Leu Arg Ala 210 215 220 Leu Asp Gly Gly Asn Lys His Phe Leu Arg Asn Gln Pro Leu Thr Phe 225 230 235 240 Ala Leu Gln Leu His Asp Pro Ser Gly Tyr Leu Ala Glu Ala Asp Leu 245 250 255 Ser Tyr Thr Trp Asp Phe Gly Asp Ser Ser Gly Thr Leu Ile Ser Arg 260 265 270 Ala Leu Val Val Thr His Thr Tyr Leu Glu Pro Gly Pro Val Thr Ala 275 280 285 Gln Val Val Leu Gln Ala Ala Ile Pro Leu Thr Ser Cys Gly Ser Ser 290 295 300 Pro Val Pro Gly Thr Thr Asp Gly His Arg Pro Thr Ala Glu Ala Pro 305 310 315 320 Asn Thr Thr Ala Gly Gln Val Pro Thr Thr Glu Val Val Gly Thr Thr 325 330 335 Pro Gly Gln Ala Pro Thr Ala Glu Pro Ser Gly Thr Thr Ser Val Gln 340 345 350 Val Pro Thr Thr Glu Val Ile Ser Thr Ala Pro Val Gln Met Pro Thr 355 360 365 Ala Glu Ser Thr Gly Met Thr Pro Glu Lys Val Pro Val Ser Glu Val 370 375 380 Met Gly Thr Thr Leu Ala Glu Met Ser Thr Pro Glu Ala Thr Gly Met 385 390 395 400 Thr Pro Ala Glu Val Ser Ile Val Val Leu Ser Gly Thr Thr Ala Ala 405 410 415 Gln Val Thr Thr Thr Glu Trp Val Glu Thr Thr Ala Arg Glu Leu Pro 420 425 430 Ile Pro Glu Pro Glu Gly Pro Asp Ala Ser Ser Ile Met Ser Thr Glu 435 440 445 Ser Ile Thr Gly Ser Leu Gly Pro Leu Leu Asp Gly Thr Ala Thr Leu 450 455 460 Arg Leu Val Lys Arg Gln Val Pro Leu Asp Cys Val Leu Tyr Arg Tyr 465 470 475 480 Gly Ser Phe Ser Val Thr Leu Asp Ile Val Gln Gly Ile Glu Ser Ala 485 490 495 Glu Ile Leu Gln Ala Val Pro Ser Gly Glu Gly Asp Ala Phe Glu Leu 500 505 510 Thr Val Ser Cys Gln Gly Gly Leu Pro Lys Glu Ala Cys Met Glu Ile 515 520 525 Ser Ser Pro Gly Cys Gln Pro Pro Ala Gln Arg Leu Cys Gln Pro Val 530 535 540 Leu Pro Ser Pro Ala Cys Gln Leu Val Leu His Gln Ile Leu Lys Gly 545 550 555 560 Gly Ser Gly Thr Tyr Cys Leu Asn Val Ser Leu Ala Asp Thr Asn Ser 565 570 575 Leu Ala Val Val Ser Thr Gln Leu Ile Met Pro Gly Gln Glu Ala Gly 580 585 590 Leu Gly Gln Val Pro Leu Ile Val Gly Ile Leu Leu Val Leu Met Ala 595 600 605 Val Val Leu Ala Ser Leu Ile Tyr Arg Arg Arg Leu Met Lys Gln Asp 610 615 620 Phe Ser Val Pro Gln Leu Pro His Ser Ser Ser His Trp Leu Arg Leu 625 630 635 640 Pro Arg Ile Phe Cys Ser Cys Pro Ile Gly Glu Asn Ser Pro Leu Leu 645 650 655 Ser Gly Gln Gln Val 660 <210> 53 <211> twenty one <212> DNA <213> Artificial Sequence <220> <223> siRNA-TCRa-1 <400> 53 guaaggauuc ugauguguat t 21 <210> 54 <211> twenty one <212> DNA <213> Artificial Sequence <220> <223> siRNA-TCRa-2 <400> 54 uacacaucag aauccuuact t 21 <210> 55 <211> twenty one <212> DNA <213> Artificial Sequence <220> <223> siRNA-TCRb-1 <400> 55 ccaccauccu cuaugagaut t 21 <210> 56 <211> twenty one <212> DNA <213> Artificial Sequence <220> <223> siRNA-TCRb-2 <400> 56 aucucauaga ggaugguggt t 21 <210> 57 <400> 57 000 <210> 58 <400> 58 000 <210> 59 <400> 59 000 <210> 60 <400> 60 000 <210> 61 <400> 61 000 <210> 62 <211> 9 <212> PRT <213> Artificial Sequence <220> <223> MAGE-A1289-297 <400> 62 Arg Val Arg Phe Phe Phe Pro Ser Leu 1 5 <210> 63 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> HIV nef105-115 <400> 63 Lys Arg Gln Asp Ile Leu Asp Leu Trp Val Tyr Tyr Phe Pro Asp Trp 1 5 10 15 Gln Asn Tyr Thr 20 <210> 64 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 64 Met Asp Leu Val Leu Lys Arg Cys Leu Leu His Leu Ala Val Ile Gly 1 5 10 15 Ala Leu Leu Ala 20 <210> 65 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 65 Lys Arg Cys Leu Leu His Leu Ala Val Ile Gly Ala Leu Leu Ala Val 1 5 10 15 Gly Ala Thr Lys 20 <210> 66 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 66 His Leu Ala Val Ile Gly Ala Leu Leu Ala Val Gly Ala Thr Lys Val 1 5 10 15 Pro Arg Asn Gln 20 <210> 67 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 67 Gly Ala Leu Leu Ala Val Gly Ala Thr Lys Val Pro Arg Asn Gln Asp 1 5 10 15 Trp Leu Gly Val 20 <210> 68 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 68 Val Gly Ala Thr Lys Val Pro Arg Asn Gln Asp Trp Leu Gly Val Ser 1 5 10 15 Arg Gln Leu Arg 20 <210> 69 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 69 Val Pro Arg Asn Gln Asp Trp Leu Gly Val Ser Arg Gln Leu Arg Thr 1 5 10 15 Lys Ala Trp Asn 20 <210> 70 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 70 Asp Trp Leu Gly Val Ser Arg Gln Leu Arg Thr Lys Ala Trp Asn Arg 1 5 10 15 Gln Leu Tyr Pro 20 <210> 71 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 71 Ser Arg Gln Leu Arg Thr Lys Ala Trp Asn Arg Gln Leu Tyr Pro Glu 1 5 10 15 Trp Thr Glu Ala 20 <210> 72 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 72 Thr Lys Ala Trp Asn Arg Gln Leu Tyr Pro Glu Trp Thr Glu Ala Gln 1 5 10 15 Arg Leu Asp Cys 20 <210> 73 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 73 Arg Gln Leu Tyr Pro Glu Trp Thr Glu Ala Gln Arg Leu Asp Cys Trp 1 5 10 15 Arg Gly Gly Gln 20 <210> 74 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 74 Glu Trp Thr Glu Ala Gln Arg Leu Asp Cys Trp Arg Gly Gly Gln Val 1 5 10 15 Ser Leu Lys Val 20 <210> 75 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 75 Gln Arg Leu Asp Cys Trp Arg Gly Gly Gln Val Ser Leu Lys Val Ser 1 5 10 15 Asn Asp Gly Pro 20 <210> 76 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 76 Trp Arg Gly Gly Gln Val Ser Leu Lys Val Ser Asn Asp Gly Pro Thr 1 5 10 15 Leu Ile Gly Ala 20 <210> 77 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 77 Val Ser Leu Lys Val Ser Asn Asp Gly Pro Thr Leu Ile Gly Ala Asn 1 5 10 15 Ala Ser Phe Ser 20 <210> 78 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 78 Ser Asn Asp Gly Pro Thr Leu Ile Gly Ala Asn Ala Ser Phe Ser Ile 1 5 10 15 Ala Leu Asn Phe 20 <210> 79 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 79 Thr Leu Ile Gly Ala Asn Ala Ser Phe Ser Ile Ala Leu Asn Phe Pro 1 5 10 15 Gly Ser Gln Lys 20 <210> 80 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 80 Asn Ala Ser Phe Ser Ile Ala Leu Asn Phe Pro Gly Ser Gln Lys Val 1 5 10 15 Leu Pro Asp Gly 20 <210> 81 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 81 Ile Ala Leu Asn Phe Pro Gly Ser Gln Lys Val Leu Pro Asp Gly Gln 1 5 10 15 Val Ile Trp Val 20 <210> 82 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 82 Pro Gly Ser Gln Lys Val Leu Pro Asp Gly Gln Val Ile Trp Val Asn 1 5 10 15 Asn Thr Ile Ile 20 <210> 83 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 83 Val Leu Pro Asp Gly Gln Val Ile Trp Val Asn Asn Thr Ile Ile Asn 1 5 10 15 Gly Ser Gln Val 20 <210> 84 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 84 Gln Val Ile Trp Val Asn Asn Thr Ile Ile Asn Gly Ser Gln Val Trp 1 5 10 15 Gly Gly Gln Pro 20 <210> 85 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 85 Asn Asn Thr Ile Ile Asn Gly Ser Gln Val Trp Gly Gly Gln Pro Val 1 5 10 15 Tyr Pro Gln Glu 20 <210> 86 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 86 Asn Gly Ser Gln Val Trp Gly Gly Gln Pro Val Tyr Pro Gln Glu Thr 1 5 10 15 Asp Asp Ala Cys 20 <210> 87 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 87 Trp Gly Gly Gln Pro Val Tyr Pro Gln Glu Thr Asp Asp Ala Cys Ile 1 5 10 15 Phe Pro Asp Gly 20 <210> 88 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 88 Val Tyr Pro Gln Glu Thr Asp Asp Ala Cys Ile Phe Pro Asp Gly Gly 1 5 10 15 Pro Cys Pro Ser 20 <210> 89 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 89 Thr Asp Asp Ala Cys Ile Phe Pro Asp Gly Gly Pro Cys Pro Ser Gly 1 5 10 15 Ser Trp Ser Gln 20 <210> 90 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 90 Ile Phe Pro Asp Gly Gly Pro Cys Pro Ser Gly Ser Trp Ser Gln Lys 1 5 10 15 Arg Ser Phe Val 20 <210> 91 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 91 Gly Pro Cys Pro Ser Gly Ser Trp Ser Gln Lys Arg Ser Phe Val Tyr 1 5 10 15 Val Trp Lys Thr 20 <210> 92 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 92 Gly Ser Trp Ser Gln Lys Arg Ser Phe Val Tyr Val Trp Lys Thr Trp 1 5 10 15 Gly Gln Tyr Trp 20 <210> 93 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 93 Lys Arg Ser Phe Val Tyr Val Trp Lys Thr Trp Gly Gln Tyr Trp Gln 1 5 10 15 Val Leu Gly Gly 20 <210> 94 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 94 Tyr Val Trp Lys Thr Trp Gly Gln Tyr Trp Gln Val Leu Gly Gly Pro 1 5 10 15 Val Ser Gly Leu 20 <210> 95 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 95 Trp Gly Gln Tyr Trp Gln Val Leu Gly Gly Pro Val Ser Gly Leu Ser 1 5 10 15 Ile Gly Thr Gly 20 <210> 96 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 96 Gln Val Leu Gly Gly Pro Val Ser Gly Leu Ser Ile Gly Thr Gly Arg 1 5 10 15 Ala Met Leu Gly 20 <210> 97 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 97 Pro Val Ser Gly Leu Ser Ile Gly Thr Gly Arg Ala Met Leu Gly Thr 1 5 10 15 His Thr Met Glu 20 <210> 98 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 98 Ser Ile Gly Thr Gly Arg Ala Met Leu Gly Thr His Thr Met Glu Val 1 5 10 15 Thr Val Tyr His 20 <210> 99 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 99 Arg Ala Met Leu Gly Thr His Thr Met Glu Val Thr Val Tyr His Arg 1 5 10 15 Arg Gly Ser Arg 20 <210> 100 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 100 Thr His Thr Met Glu Val Thr Val Tyr His Arg Arg Gly Ser Arg Ser 1 5 10 15 Tyr Val Pro Leu 20 <210> 101 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 101 Val Thr Val Tyr His Arg Arg Gly Ser Arg Ser Tyr Val Pro Leu Ala 1 5 10 15 His Ser Ser Ser 20 <210> 102 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 102 Arg Arg Gly Ser Arg Ser Tyr Val Pro Leu Ala His Ser Ser Ser Ala 1 5 10 15 Phe Thr Ile Thr 20 <210> 103 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 103 Ser Tyr Val Pro Leu Ala His Ser Ser Ser Ala Phe Thr Ile Thr Asp 1 5 10 15 Gln Val Pro Phe 20 <210> 104 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 104 Ala His Ser Ser Ser Ala Phe Thr Ile Thr Asp Gln Val Pro Phe Ser 1 5 10 15 Val Ser Val Ser 20 <210> 105 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 105 Ala Phe Thr Ile Thr Asp Gln Val Pro Phe Ser Val Ser Val Ser Gln 1 5 10 15 Leu Arg Ala Leu 20 <210> 106 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 106 Asp Gln Val Pro Phe Ser Val Ser Val Ser Gln Leu Arg Ala Leu Asp 1 5 10 15 Gly Gly Asn Lys 20 <210> 107 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 107 Ser Val Ser Val Ser Gln Leu Arg Ala Leu Asp Gly Gly Asn Lys His 1 5 10 15 Phe Leu Arg Asn 20 <210> 108 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 108 Gln Leu Arg Ala Leu Asp Gly Gly Asn Lys His Phe Leu Arg Asn Gln 1 5 10 15 Pro Leu Thr Phe 20 <210> 109 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 109 Asp Gly Gly Asn Lys His Phe Leu Arg Asn Gln Pro Leu Thr Phe Ala 1 5 10 15 Leu Gln Leu His 20 <210> 110 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 110 His Phe Leu Arg Asn Gln Pro Leu Thr Phe Ala Leu Gln Leu His Asp 1 5 10 15 Pro Ser Gly Tyr 20 <210> 111 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 111 Gln Pro Leu Thr Phe Ala Leu Gln Leu His Asp Pro Ser Gly Tyr Leu 1 5 10 15 Ala Glu Ala Asp 20 <210> 112 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 112 Ala Leu Gln Leu His Asp Pro Ser Gly Tyr Leu Ala Glu Ala Asp Leu 1 5 10 15 Ser Tyr Thr Trp 20 <210> 113 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 113 Asp Pro Ser Gly Tyr Leu Ala Glu Ala Asp Leu Ser Tyr Thr Trp Asp 1 5 10 15 Phe Gly Asp Ser 20 <210> 114 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 114 Leu Ala Glu Ala Asp Leu Ser Tyr Thr Trp Asp Phe Gly Asp Ser Ser 1 5 10 15 Gly Thr Leu Ile 20 <210> 115 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 115 Leu Ser Tyr Thr Trp Asp Phe Gly Asp Ser Ser Gly Thr Leu Ile Ser 1 5 10 15 Arg Ala Leu Val 20 <210> 116 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 116 Asp Phe Gly Asp Ser Ser Gly Thr Leu Ile Ser Arg Ala Leu Val Val 1 5 10 15 Thr His Thr Tyr 20 <210> 117 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 117 Ser Gly Thr Leu Ile Ser Arg Ala Leu Val Val Thr His Thr Tyr Leu 1 5 10 15 Glu Pro Gly Pro 20 <210> 118 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 118 Ser Arg Ala Leu Val Val Thr His Thr Tyr Leu Glu Pro Gly Pro Val 1 5 10 15 Thr Ala Gln Val 20 <210> 119 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 119 Val Thr His Thr Tyr Leu Glu Pro Gly Pro Val Thr Ala Gln Val Val 1 5 10 15 Leu Gln Ala Ala 20 <210> 120 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 120 Leu Glu Pro Gly Pro Val Thr Ala Gln Val Val Leu Gln Ala Ala Ile 1 5 10 15 Pro Leu Thr Ser 20 <210> 121 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 121 Val Thr Ala Gln Val Val Leu Gln Ala Ala Ile Pro Leu Thr Ser Cys 1 5 10 15 Gly Ser Ser Pro 20 <210> 122 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 122 Val Leu Gln Ala Ala Ile Pro Leu Thr Ser Cys Gly Ser Ser Pro Val 1 5 10 15 Pro Gly Thr Thr 20 <210> 123 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 123 Ile Pro Leu Thr Ser Cys Gly Ser Ser Pro Val Pro Gly Thr Thr Asp 1 5 10 15 Gly His Arg Pro 20 <210> 124 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 124 Cys Gly Ser Ser Pro Val Pro Gly Thr Thr Asp Gly His Arg Pro Thr 1 5 10 15 Ala Glu Ala Pro 20 <210> 125 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 125 Val Pro Gly Thr Thr Asp Gly His Arg Pro Thr Ala Glu Ala Pro Asn 1 5 10 15 Thr Thr Ala Gly 20 <210> 126 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 126 Asp Gly His Arg Pro Thr Ala Glu Ala Pro Asn Thr Thr Ala Gly Gln 1 5 10 15 Val Pro Thr Thr 20 <210> 127 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 127 Thr Ala Glu Ala Pro Asn Thr Thr Ala Gly Gln Val Pro Thr Thr Glu 1 5 10 15 Val Val Gly Thr 20 <210> 128 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 128 Asn Thr Thr Ala Gly Gln Val Pro Thr Thr Glu Val Val Gly Thr Thr 1 5 10 15 Pro Gly Gln Ala 20 <210> 129 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 129 Gln Val Pro Thr Thr Glu Val Val Gly Thr Thr Pro Gly Gln Ala Pro 1 5 10 15 Thr Ala Glu Pro 20 <210> 130 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 130 Glu Val Val Gly Thr Thr Pro Gly Gln Ala Pro Thr Ala Glu Pro Ser 1 5 10 15 Gly Thr Thr Ser 20 <210> 131 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 131 Thr Pro Gly Gln Ala Pro Thr Ala Glu Pro Ser Gly Thr Thr Ser Val 1 5 10 15 Gln Val Pro Thr 20 <210> 132 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 132 Pro Thr Ala Glu Pro Ser Gly Thr Thr Ser Val Gln Val Pro Thr Thr 1 5 10 15 Glu Val Ile Ser 20 <210> 133 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 133 Ser Gly Thr Thr Ser Val Gln Val Pro Thr Thr Glu Val Ile Ser Thr 1 5 10 15 Ala Pro Val Gln 20 <210> 134 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 134 Val Gln Val Pro Thr Thr Glu Val Ile Ser Thr Ala Pro Val Gln Met 1 5 10 15 Pro Thr Ala Glu 20 <210> 135 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 135 Thr Glu Val Ile Ser Thr Ala Pro Val Gln Met Pro Thr Ala Glu Ser 1 5 10 15 Thr Gly Met Thr 20 <210> 136 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 136 Thr Ala Pro Val Gln Met Pro Thr Ala Glu Ser Thr Gly Met Thr Pro 1 5 10 15 Glu Lys Val Pro 20 <210> 137 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 137 Met Pro Thr Ala Glu Ser Thr Gly Met Thr Pro Glu Lys Val Pro Val 1 5 10 15 Ser Glu Val Met 20 <210> 138 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 138 Ser Thr Gly Met Thr Pro Glu Lys Val Pro Val Ser Glu Val Met Gly 1 5 10 15 Thr Thr Leu Ala 20 <210> 139 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 139 Pro Glu Lys Val Pro Val Ser Glu Val Met Gly Thr Thr Leu Ala Glu 1 5 10 15 Met Ser Thr Pro 20 <210> 140 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 140 Val Ser Glu Val Met Gly Thr Thr Leu Ala Glu Met Ser Thr Pro Glu 1 5 10 15 Ala Thr Gly Met 20 <210> 141 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 141 Gly Thr Thr Leu Ala Glu Met Ser Thr Pro Glu Ala Thr Gly Met Thr 1 5 10 15 Pro Ala Glu Val 20 <210> 142 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 142 Glu Met Ser Thr Pro Glu Ala Thr Gly Met Thr Pro Ala Glu Val Ser 1 5 10 15 Ile Val Val Leu 20 <210> 143 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 143 Glu Ala Thr Gly Met Thr Pro Ala Glu Val Ser Ile Val Val Leu Ser 1 5 10 15 Gly Thr Thr Ala 20 <210> 144 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 144 Thr Pro Ala Glu Val Ser Ile Val Val Leu Ser Gly Thr Thr Ala Ala 1 5 10 15 Gln Val Thr Thr 20 <210> 145 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 145 Ser Ile Val Val Leu Ser Gly Thr Thr Ala Ala Gln Val Thr Thr Thr 1 5 10 15 Glu Trp Val Glu 20 <210> 146 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 146 Ser Gly Thr Thr Ala Ala Gln Val Thr Thr Thr Glu Trp Val Glu Thr 1 5 10 15 Thr Ala Arg Glu 20 <210> 147 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 147 Ala Gln Val Thr Thr Thr Thr Glu Trp Val Glu Thr Thr Ala Arg Glu Leu 1 5 10 15 Pro Ile Pro Glu 20 <210> 148 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 148 Thr Glu Trp Val Glu Thr Thr Ala Arg Glu Leu Pro Ile Pro Glu Pro 1 5 10 15 Glu Gly Pro Asp 20 <210> 149 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 149 Thr Thr Ala Arg Glu Leu Pro Ile Pro Glu Pro Glu Gly Pro Asp Ala 1 5 10 15 Ser Ser Ile Met 20 <210> 150 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 150 Leu Pro Ile Pro Glu Pro Glu Gly Pro Asp Ala Ser Ser Ile Met Ser 1 5 10 15 Thr Glu Ser Ile 20 <210> 151 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 151 Pro Glu Gly Pro Asp Ala Ser Ser Ile Met Ser Thr Glu Ser Ile Thr 1 5 10 15 Gly Ser Leu Gly 20 <210> 152 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 152 Ala Ser Ser Ile Met Ser Thr Glu Ser Ile Thr Gly Ser Leu Gly Pro 1 5 10 15 Leu Leu Asp Gly 20 <210> 153 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 153 Ser Thr Glu Ser Ile Thr Gly Ser Leu Gly Pro Leu Leu Asp Gly Thr 1 5 10 15 Ala Thr Leu Arg 20 <210> 154 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 154 Thr Gly Ser Leu Gly Pro Leu Leu Asp Gly Thr Ala Thr Leu Arg Leu 1 5 10 15 Val Lys Arg Gln 20 <210> 155 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 155 Pro Leu Leu Asp Gly Thr Ala Thr Leu Arg Leu Val Lys Arg Gln Val 1 5 10 15 Pro Leu Asp Cys 20 <210> 156 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 156 Thr Ala Thr Leu Arg Leu Val Lys Arg Gln Val Pro Leu Asp Cys Val 1 5 10 15 Leu Tyr Arg Tyr 20 <210> 157 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 157 Leu Val Lys Arg Gln Val Pro Leu Asp Cys Val Leu Tyr Arg Tyr Gly 1 5 10 15 Ser Phe Ser Val 20 <210> 158 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 158 Val Pro Leu Asp Cys Val Leu Tyr Arg Tyr Gly Ser Phe Ser Val Thr 1 5 10 15 Leu Asp Ile Val 20 <210> 159 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 159 Val Leu Tyr Arg Tyr Gly Ser Phe Ser Val Thr Leu Asp Ile Val Gln 1 5 10 15 Gly Ile Glu Ser 20 <210> 160 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 160 Gly Ser Phe Ser Val Thr Leu Asp Ile Val Gln Gly Ile Glu Ser Ala 1 5 10 15 Glu Ile Leu Gln 20 <210> 161 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 161 Thr Leu Asp Ile Val Gln Gly Ile Glu Ser Ala Glu Ile Leu Gln Ala 1 5 10 15 Val Pro Ser Gly 20 <210> 162 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 162 Gln Gly Ile Glu Ser Ala Glu Ile Leu Gln Ala Val Pro Ser Gly Glu 1 5 10 15 Gly Asp Ala Phe 20 <210> 163 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 163 Ala Glu Ile Leu Gln Ala Val Pro Ser Gly Glu Gly Asp Ala Phe Glu 1 5 10 15 Leu Thr Val Ser 20 <210> 164 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 164 Ala Val Pro Ser Gly Glu Gly Asp Ala Phe Glu Leu Thr Val Ser Cys 1 5 10 15 Gln Gly Gly Leu 20 <210> 165 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 165 Glu Gly Asp Ala Phe Glu Leu Thr Val Ser Cys Gln Gly Gly Leu Pro 1 5 10 15 Lys Glu Ala Cys 20 <210> 166 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 166 Glu Leu Thr Val Ser Cys Gln Gly Gly Leu Pro Lys Glu Ala Cys Met 1 5 10 15 Glu Ile Ser Ser 20 <210> 167 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 167 Cys Gln Gly Gly Leu Pro Lys Glu Ala Cys Met Glu Ile Ser Ser Pro 1 5 10 15 Gly Cys Gln Pro 20 <210> 168 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 168 Pro Lys Glu Ala Cys Met Glu Ile Ser Ser Pro Gly Cys Gln Pro Pro 1 5 10 15 Ala Gln Arg Leu 20 <210> 169 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 169 Met Glu Ile Ser Ser Pro Gly Cys Gln Pro Pro Ala Gln Arg Leu Cys 1 5 10 15 Gln Pro Val Leu 20 <210> 170 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 170 Pro Gly Cys Gln Pro Pro Ala Gln Arg Leu Cys Gln Pro Val Leu Pro 1 5 10 15 Ser Pro Ala Cys 20 <210> 171 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 171 Pro Ala Gln Arg Leu Cys Gln Pro Val Leu Pro Ser Pro Ala Cys Gln 1 5 10 15 Leu Val Leu His 20 <210> 172 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 172 Cys Gln Pro Val Leu Pro Ser Pro Ala Cys Gln Leu Val Leu His Gln 1 5 10 15 Ile Leu Lys Gly 20 <210> 173 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 173 Pro Ser Pro Ala Cys Gln Leu Val Leu His Gln Ile Leu Lys Gly Gly 1 5 10 15 Ser Gly Thr Tyr 20 <210> 174 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 174 Gln Leu Val Leu His Gln Ile Leu Lys Gly Gly Ser Gly Thr Tyr Cys 1 5 10 15 Leu Asn Val Ser 20 <210> 175 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 175 Gln Ile Leu Lys Gly Gly Ser Gly Thr Tyr Cys Leu Asn Val Ser Leu 1 5 10 15 Ala Asp Thr Asn 20 <210> 176 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 176 Gly Ser Gly Thr Tyr Cys Leu Asn Val Ser Leu Ala Asp Thr Asn Ser 1 5 10 15 Leu Ala Val Val 20 <210> 177 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 177 Cys Leu Asn Val Ser Leu Ala Asp Thr Asn Ser Leu Ala Val Val Ser 1 5 10 15 Thr Gln Leu Ile 20 <210> 178 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 178 Leu Ala Asp Thr Asn Ser Leu Ala Val Val Ser Thr Gln Leu Ile Met 1 5 10 15 Pro Gly Gln Glu 20 <210> 179 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 179 Ser Leu Ala Val Val Ser Thr Gln Leu Ile Met Pro Gly Gln Glu Ala 1 5 10 15 Gly Leu Gly Gln 20 <210> 180 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 180 Ser Thr Gln Leu Ile Met Pro Gly Gln Glu Ala Gly Leu Gly Gln Val 1 5 10 15 Pro Leu Ile Val 20 <210> 181 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 181 Met Pro Gly Gln Glu Ala Gly Leu Gly Gln Val Pro Leu Ile Val Gly 1 5 10 15 Ile Leu Leu Val 20 <210> 182 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 182 Ala Gly Leu Gly Gln Val Pro Leu Ile Val Gly Ile Leu Leu Val Leu 1 5 10 15 Met Ala Val Val 20 <210> 183 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 183 Val Pro Leu Ile Val Gly Ile Leu Leu Val Leu Met Ala Val Val Leu 1 5 10 15 Ala Ser Leu Ile 20 <210> 184 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 184 Gly Ile Leu Leu Val Leu Met Ala Val Val Leu Ala Ser Leu Ile Tyr 1 5 10 15 Arg Arg Arg Leu 20 <210> 185 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 185 Leu Met Ala Val Val Leu Ala Ser Leu Ile Tyr Arg Arg Arg Leu Met 1 5 10 15 Lys Gln Asp Phe 20 <210> 186 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 186 Leu Ala Ser Leu Ile Tyr Arg Arg Arg Leu Met Lys Gln Asp Phe Ser 1 5 10 15 Val Pro Gln Leu 20 <210> 187 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 187 Tyr Arg Arg Arg Leu Met Lys Gln Asp Phe Ser Val Pro Gln Leu Pro 1 5 10 15 His Ser Ser Ser 20 <210> 188 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 188 Met Lys Gln Asp Phe Ser Val Pro Gln Leu Pro His Ser Ser Ser His 1 5 10 15 Trp Leu Arg Leu 20 <210> 189 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 189 Ser Val Pro Gln Leu Pro His Ser Ser Ser His Trp Leu Arg Leu Pro 1 5 10 15 Arg Ile Phe Cys 20 <210> 190 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 190 Pro His Ser Ser Ser His Trp Leu Arg Leu Pro Arg Ile Phe Cys Ser 1 5 10 15 Cys Pro Ile Gly 20 <210> 191 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 191 His Trp Leu Arg Leu Pro Arg Ile Phe Cys Ser Cys Pro Ile Gly Glu 1 5 10 15 Asn Ser Pro Leu 20 <210> 192 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 192 Pro Arg Ile Phe Cys Ser Cys Pro Ile Gly Glu Asn Ser Pro Leu Leu 1 5 10 15 Ser Gly Gln Gln 20 <210> 193 <211> 20 <212> PRT <213> Artificial Sequence <220> <223> Synthetic peptides <400> 193 Arg Ile Phe Cys Ser Cys Pro Ile Gly Glu Asn Ser Pro Leu Leu Ser 1 5 10 15 Gly Gln Gln Val 20 <210> 194 <211> 16 <212> PRT <213> Artificial Sequence <220> <223> gp100 479-486 <400> 194 Arg Tyr Gly Ser Phe Ser Val Thr His Arg Arg Gly Ser Arg Ser Tyr 1 5 10 15
Claims
1. A nucleic acid molecule comprising (i) a first nucleotide sequence encoding an anti-gplOO recombinant T cell receptor anti-gplOO TCR or antigen binding portion thereof that specifically binds to a human gplOO epitope consisting of the amino acid sequence set forth in SEQ ID NO: 13, wherein the epitope is complexed with an HLA Class I molecule HLA-C*07 allele; wherein the anti-gplOO TCR or antigen binding portion thereof comprises an alpha chain and a beta chain, wherein the alpha chain comprises a variable domain comprising an alpha chain CDR1, an alpha chain CDR2, and an alpha chain CDR3; and wherein: (i) the amino acid sequence of the beta chain CDR3 is set forth in SEQ ID NO: 10; (ii) the amino acid sequence of the beta chain CDR2 is set forth in SEQ ID NO: 9; (iii) the amino acid sequence of the beta chain CDR1 is set forth in SEQ ID NO: 6; (iv) the amino acid sequence of the alpha chain CDR3 is set forth in SEQ ID NO: 7; (v) the amino acid sequence of the alpha chain CDR2 is set forth in SEQ ID NO: 8; and (vi) the amino acid sequence of the alpha chain CDR1 is set forth in SEQ ID NO: 5; and (ii) a second nucleotide sequence, wherein the second nucleotide sequence or a polypeptide encoded by the second nucleotide sequence inhibits expression of an endogenous TCR.
2. The nucleic acid molecule of claim 1, wherein the HLA Class I molecule HLA-C*07 allele is selected from the group consisting of an HLA-C*07:01 allele, an HLA-C*07:02 allele, an HLA-C*07:03 allele, an HLA-C*07:04 allele, an HLA-C*07:05 allele, an HLA-C*07:06 allele, an HLA-C*07:07 allele, and an HLA-C*07:08 allele.
3. The nucleic acid molecule of any one of claims 1-2, wherein (i) the amino acid sequence of the alpha chain is set forth in SEQ ID NO: 1; (ii) the amino acid sequence of the beta chain is set forth in SEQ ID NO: 2; or (iii) both (i) and (ii).
4. The nucleic acid molecule of claim 1 or 2, wherein the second nucleotide sequence (i) is one or more siRNAs that reduce expression of an endogenous TCR, wherein the one or more siRNAs are complementary to a target sequence within a nucleotide sequence encoding a constant region of the endogenous TCR; (ii) encodes a Cas9; or (iii) both (i) and (ii).
5. The nucleic acid molecule of claim 4, wherein the one or more siRNAs comprise one or more nucleotide sequences selected from the group consisting of SEQ ID NOs: 53-56.
6. A vector comprising the nucleic acid molecule of any one of claims 1 to 5.
7. The vector of claim 6, which is a viral vector, a mammalian vector, or a bacterial vector.
8. The vector of claim 7, which is a retroviral vector.
9. The vector of claim 6, which is selected from the group consisting of an adenoviral vector, a lentiviral vector, a Sendai virus vector, a baculovirus vector, an Epstein Barr virus vector, a papovaviral vector, a vaccinia virus vector, a herpes simplex virus vector, a hybrid vector, and an adeno-associated virus vector.
10. The vector of claim 6, which is a lentiviral vector.
11. A cell comprising the nucleic acid molecule of any one of claims 1 to 5 or the vector of any one of claims 6 to 10.
12. The cell of claim 11, which further expresses CD3.
13. The cell of claim 11, which is a T cell.
14. The cell of claim 11, which is a natural killer cell, a natural killer T cell, or an ILC cell.
15. Use of the cell of claim 11 in the manufacture of a medicament for treating melanoma in a subject in need thereof.
16. The use of claim 15, wherein the melanoma is relapsed or refractory.
17. The use of claim 15, wherein the melanoma is locally advanced.
18. The use of claim 15, wherein the melanoma is advanced.
19. The use of claim 15, wherein the melanoma is metastatic.
20. The use of claim 15, wherein the cell is obtained from the subject.
21. The use of claim 15, wherein the cell is obtained from a donor other than the subject.
22. A method of engineering a cell targeting an antigen, the method comprising transducing a cell collected from a subject in need of a T cell therapy with the nucleic acid molecule of any one of claims 1 to 5 or the vector of any one of claims 6 to 10.
23. The method of claim 22, wherein the cell targeting an antigen further expresses CD3.
24. The method of claim 22 or 23, wherein the cell is a T cell.
25. The method of claim 22 or 23, wherein the cell is a natural killer cell.
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