Antibodies that bind VEGF and IL-1 beta and methods of use
Bispecific anti-VEGF/anti-IL-1 beta antibodies with optimized paratope arrangements achieve high affinity binding to both VEGF and IL-1 beta, addressing the need for improved therapeutic antibodies by effectively inhibiting the binding of these proteins to their receptors.
Patent Information
- Application Number
- JP2023139510
- Authority / Receiving Office
- JP · JP
- Patent Type
- Patents
- Current Assignee / Owner
- Priority Date
- 2018-12-21
- Filing Date
- 2023-08-30
- Publication Date
- 2025-05-20
- Estimated Expiration
- 2039-12-20
AI Technical Summary
There is a need for improved therapeutic antibodies that can effectively bind to VEGF and IL-1 beta, addressing the limitations of existing bispecific antibodies in terms of affinity and therapeutic efficacy.
Development of bispecific anti-VEGF/anti-IL-1 beta antibodies with specific paratope arrangements within a cognate pair of variable light and heavy domains, achieving high affinity binding to both VEGF and IL-1 beta.
The antibodies demonstrate high binding affinity, with Fab fragments exhibiting dissociation constants of less than 10 pM for VEGF and less than 30 pM for IL-1 beta, and show enhanced thermal stability and inhibitory activity against VEGF and IL-1 beta receptor interactions.
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Abstract
Description
[Technical field]
[0001] The present invention relates to anti-VEGF / anti-IL-1beta antibodies and methods of use thereof. [Background technology]
[0002] Bispecific antibodies binding IL-1 beta and VEGF have been previously reported and proposed for the treatment of ocular vascular diseases (WO 2016 / 075034, antibody "0032"). The bispecific anti-VEGF / anti-IL-1 beta antibody 0032 is a full-length IgG-like antibody with a VH / VL domain exchange in one binding arm (WO 2009 / 080252, Schaefer, W. et al, PNAS, 108 (2011) 11187-1191), where the binding arm of the wild-type antibody domain arrangement specifically binds IL-1 beta and the binding arm containing the VH / VL domain crossover specifically binds VEGF. The VEGF binding arm contains the VH and VL domains of the anti-VEGF antibody ranibizumab.
[0003] Multispecific antibodies comprising two paratopes in a pair of variable heavy (VH) and variable light (VL) domains are described in WO 2008 / 027236; WO 2010 / 108127 and Bostrom, J., et al., Science 323 (2009) 1610-1614, as well as in WO 2012 / 163520.
[0004] WO 2012 / 163520 discloses bispecific antibodies ("DutaFab") that contain two non-overlapping paratopes in a pair of VH and VL domains. Each paratope of the bispecific antibodies of WO 2012 / 163520 comprises amino acids from heavy and light chain CDRs, with the heavy chain CDR-H1 and CDR-H3 and the light chain CDR-L2 contributing to the first paratope, and the light chain CDR-L1 and CDR-L3 and the heavy chain CDR-H2 contributing to the second paratope. Monospecific antibodies containing individual paratopes are independently isolated from different Fab libraries, and either the first or second paratope is diversified. The amino acid sequences of the monospecific antibodies are identified and fused into dual paratope VH and VL pairs. One exemplary Fab fragment that specifically binds VEGF and IL-6 is disclosed in WO 2012 / 163520.
[0005] There is a need for improved therapeutic antibodies that bind to VEGF and IL-1 beta. Summary of the Invention
[0006] The present invention relates to bispecific anti-VEGF / anti-IL-1beta antibodies and methods of use thereof.
[0007] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, comprising a VEGF paratope and an IL-1 beta paratope within a cognate pair of a variable light domain (VL domain) and a variable heavy domain (VH domain), wherein the VEGF paratope comprises amino acid residues from CDR-H2, CDR-L1 and CDR-L3 of the antibody, and the IL-1 beta paratope comprises amino acid residues from CDR-H1, CDR-H3 and CDR-L2 of the antibody.
[0008] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, comprising a VEGF paratope and an IL-1 beta paratope within a single cognate pair of VL and VH domains, and this pair of variable light and variable heavy domains simultaneously binds to human VEGF and human IL-1 beta.
[0009] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, comprising a VEGF paratope and an IL-1 beta paratope within a cognate pair of VL and VH domains, wherein none of the amino acids included in the VEGF paratope are included in the IL-1 beta paratope.
[0010] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, comprising a VEGF paratope and an IL-1 beta paratope within a cognate pair of VL and VH domains, which binds to the same epitope on human VEGF and human IL-1 beta as an antibody having a variable heavy domain of SEQ ID NO:11 and a variable light domain of SEQ ID NO:12.
[0011] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, wherein the antibody Fab fragment of the antibody has (i) a K of less than 10 pM as measured by surface plasmon resonance. D and (ii) binds to human VEGF121 with a K of less than 30 pM as measured by surface plasmon resonance. D It binds to human IL-1 beta.
[0012] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, wherein an antibody Fab fragment of the antibody exhibits an onset aggregation temperature of greater than 70°C.
[0013] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, wherein an antibody Fab fragment of the antibody exhibits a melting temperature of greater than 80° C. as measured by dynamic light scattering.
[0014] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, wherein binding of an antibody Fab fragment of the antibody to human VEGF inhibits binding of VEGF to VEGFR2 with an IC50 of less than 50 nM as measured by surface plasmon resonance; and binding of an antibody Fab fragment of the antibody to human IL-1 beta inhibits binding of IL-1 beta to IL-1 beta R1 with an IC50 of less than 30 nM as measured by surface plasmon resonance.
[0015] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, the antibody comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8.
[0016] In one aspect, the invention provides an antibody that binds human VEGF and human IL-1 beta, the antibody comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30, (ii) FR3 comprising amino acid residues R66, R83, and K94; and (e) a CDR-H4 domain comprising a CDR-H5 domain comprising a CDR-H6 domain comprising a CDR-H7 domain comprising a CDR-H8 domain comprising a CDR-H9 domain comprising a CDR-H1 domain comprising the amino acid sequence of SEQ ID NO: 16; (f) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system.
[0017] In one aspect the invention provides an antibody which binds human VEGF and human IL-1 beta, comprising a VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98 and D101, and a VL domain comprising amino acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94 and Y96, wherein the numbering of the VH and VL domains is according to the Kabat numbering system. In one embodiment, the antibody comprises a VEGF paratope comprising amino acid residues D55, H56, Y58, T61, K62, F63, I64, R66, and R83 in the VH domain, and amino acid residues I2, Y27, W27a, S27c, S27d, E67, D68, Q69, R92, Y93, H94, and Y96 in the VL domain, and an IL-1 beta paratope comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, K94, D95, V96, F98, and D101 in the VH domain, and amino acid residues L32, Y49, D50, Y53, K54, L56, G57, Y91 in the VL domain.
[0018] In one aspect the invention provides an antibody which binds human VEGF and human IL-1 beta, comprising a VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98 and D101, and a VL domain comprising amino acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, S67, H68, E69, Y91, R92, Y93, H94 and Y96, wherein the numbering of the VH and VL domains is according to the Kabat numbering system. In one embodiment, the antibody comprises a VEGF paratope comprising amino acid residues D55, H56, Y58, T61, K62, F63, I64, R66, and R83 in the VH domain and amino acid residues I2, Y27, W27a, S27c, S27d, S67, H68, E69, R92, Y93, H94, and Y96 in the VL domain, and an IL-1 beta paratope comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, K94, D95, V96, F98, and D101 in the VH domain and amino acid residues L32, Y49, D50, Y53, K54, L56, G57, Y91 in the VL domain.
[0019] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, comprising: (a) a VH domain comprising an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO:11; and (b) a VL domain comprising an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO:12.
[0020] In one aspect, the present invention provides an antibody that binds to human VEGF and human IL-1 beta, and comprises a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein the antibody comprises (a) a VH domain comprising an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 11, and (b) a VL domain comprising an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12.
[0021] In one aspect, the present invention provides an antibody that binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, and (b) a VH domain comprising an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12, said VH domain comprising amino acid residues E2, G26, V28, K30, R66, R83, and K94; and (b) a VL domain comprising an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12, said VL domain comprising amino acid residues I2, Y49, G57, E67, D68, and Q69; wherein the numbering of the VH and VL domains is according to the Kabat numbering system.
[0022] In one aspect, the present invention provides a CDR-H1 domain that binds to human VEGF and human IL-1 beta, the CDR-H1 domain comprising: (a) the amino acid sequence of SEQ ID NO: 13; (b) the amino acid sequence of SEQ ID NO: 14; (c) the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30; (ii) FR3 comprising amino acid residues R66, R83, and K94; and (e) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16; (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17; (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8; and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system; (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO:11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO:12.
[0023] In one aspect, the invention provides an antibody that binds human VEGF and human IL-1 beta, comprising: (a) a VH domain comprising the amino acid sequence of SEQ ID NO: 11 with up to 15 amino acid substitutions; and (b) a variable light domain comprising the amino acid sequence of SEQ ID NO: 12 with up to 15 amino acid substitutions. In one embodiment, the antibody comprises: (a) a VH domain comprising the amino acid sequence of SEQ ID NO: 11 with up to 15 amino acid substitutions, wherein the amino acid substitutions are located at positions 3-25, 36-49, 97-82c, 84-93 or 103-113 of SEQ ID NO: 11; and (b) a variable light domain comprising the amino acid sequence of SEQ ID NO: 12 with up to 15 amino acid substitutions, wherein the amino acid substitutions are located at positions 1, 4, 6, 8-23, 35-48, 58-66, 70-88 or 98-107 of SEQ ID NO: 12, wherein the numbering of the VH and VL domains is according to the Kabat numbering system.
[0024] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, and comprises a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises the amino acid sequence of SEQ ID NO: 11 with up to 15 amino acid substitutions, and (b) the variable light domain comprises the amino acid sequence of SEQ ID NO: 12 with up to 15 amino acid substitutions.
[0025] In one aspect, the present invention relates to a CDR-H1 domain that binds to human VEGF and human IL-1 beta, the CDR-H1 domain comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30; (ii) FR3 comprising amino acid residues R66, R83, and K94; (e) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16; (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17; (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 18; and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein numbering of the VH and VL domains is according to the Kabat numbering system; (a) the VH domain comprises the amino acid sequence of SEQ ID NO: 11 with up to 15 amino acid substitutions, and (b) the variable light domain comprises the amino acid sequence of SEQ ID NO: 12 with up to 15 amino acid substitutions.
[0026] In one aspect, the invention provides an antibody that binds human VEGF and human IL-1 beta, comprising a VH sequence of SEQ ID NO:11 and a VL sequence of SEQ ID NO:12.
[0027] In one aspect, the invention provides an antibody that binds human VEGF and human IL-1 beta, comprising a heavy chain amino acid sequence of SEQ ID NO:20 and a light chain amino acid sequence of SEQ ID NO:19.
[0028] In one aspect, the invention provides an antibody that binds human VEGF and human IL-1 beta, comprising a heavy chain amino acid sequence of SEQ ID NO:18 and a light chain amino acid sequence of SEQ ID NO:19.
[0029] In one aspect, the invention provides an antibody that binds human VEGF and human IL-1 beta, the antibody comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30, (ii) FR3 comprising amino acid residues R66, R83, and K94; and (e) a CDR comprising the amino acid sequence of SEQ ID NO: 16. (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69; the VH and VL domains are numbered according to the Kabat numbering system; an antibody Fab fragment of the antibody has (i) a K of less than 10 pM as measured by surface plasmon resonance. D and (ii) binds to human VEGF121 with a K of less than 30 pM as measured by surface plasmon resonance. D It binds to human IL-1 beta.
[0030] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12; an antibody Fab fragment of the antibody (i) binds to human VEGF121 with a KD of less than 10 pM as measured by surface plasmon resonance, and (ii) binds to human IL-1 beta with a KD of less than 30 pM as measured by surface plasmon resonance.
[0031] In one aspect, the present invention provides an antibody that binds to human VEGF and human IL-1 beta, and comprises a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12; and an antibody Fab fragment of the antibody exhibits an onset aggregation temperature of greater than 70°C.
[0032] In one aspect, the invention provides an antibody that binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12; and an antibody Fab fragment of the antibody exhibits a melting temperature of greater than 80°C as measured by dynamic light scattering.
[0033] In one aspect, the present invention provides an antibody that binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 12; and wherein binding of an antibody Fab fragment of the antibody to human IL-1 beta inhibits binding of IL-1 beta to IL-1 beta R1 with an IC50 of less than 30 nM as measured by surface plasmon resonance.
[0034] One embodiment of the invention relates to an antibody fragment that binds to human VEGF and human IL-1 beta. One embodiment of the invention relates to a bispecific antibody fragment that binds to human VEGF and human IL-1 beta. In one embodiment of the invention, the antibody fragment is an Fv, Fab, Fab', Fab'-SH, F(ab')2 or single chain antibodies derived therefrom. One embodiment of the invention relates to a Fab fragment which binds human VEGF and human IL-1 beta. One embodiment of the invention relates to an Fv fragment which binds human VEGF and human IL-1 beta.
[0035] One embodiment of the invention relates to a full-length IgG antibody that binds to human VEGF and human IL-1 beta.
[0036] In one aspect, the invention provides an isolated nucleic acid encoding an antibody of the invention.
[0037] In one aspect, the invention provides a host cell comprising a nucleic acid of the invention.
[0038] In one aspect, the invention provides an expression vector comprising a nucleic acid of the invention.
[0039] In one aspect, the invention provides a method for producing an antibody that binds human VEGF and human IL-1 beta, comprising culturing a host cell of the invention so that the antibody is produced.
[0040] In one aspect, the invention provides an antibody produced by the method of the invention.
[0041] In one aspect, the invention provides a pharmaceutical formulation comprising an antibody of the invention and a pharma- ceutically acceptable carrier.
[0042] The invention provides in one aspect an antibody of the invention for use as a medicament, in one aspect for use in the treatment of vascular disease.
[0043] The invention provides in one aspect the use of an antibody of the invention or a pharmaceutical composition of the invention in the manufacture of a medicament, in one aspect in the manufacture of a medicament for the treatment of a vascular disease.
[0044] In one aspect, the invention provides a method of treating an individual having a vascular disease, comprising administering to the individual an effective amount of an antibody of the invention or a pharmaceutical composition of the invention.
[0045] In one aspect, the invention provides a method of inhibiting angiogenesis in an individual comprising administering to the individual an effective amount of an antibody of the invention or a pharmaceutical composition of the invention to inhibit angiogenesis. According to the present invention, therapeutic anti-VEGF / anti-IL-1 beta antibodies are provided that can simultaneously bind to their target antigens even when provided as bispecific Fab fragments. Furthermore, the antibodies of the present invention offer several valuable properties that allow their therapeutic application, such as high affinity, hydrophilicity, and high stability. The antibodies of the present invention can be provided in highly concentrated liquid formulations with a viscosity suitable for application to the eye. The antibodies of the present invention are suitable for the treatment of ocular vascular diseases. [Brief description of the drawings]
[0046] [Figure 1] Schematic diagram of the Fab fragment of an anti-VEGF / anti-IL-1 beta antibody of the invention. A top view of the cognate VH / VL pair including the arrangement of the CDR amino acids is shown (top image). The VH domain is shown in grey and the VL domain in white. Additionally, the spatial arrangement of the CDR regions is shown. The paratope regions of the antibody of the invention are highlighted, with the VEGF paratope located in the regions H-CDR2, L-CDR1 and L-CDR2 and the IL-1 beta paratope located in the regions H-CDR1, H-CDR3 and L-CDR2 (bottom image). [Diagram 2] Amino acid sequence of the VH domain of an exemplary anti-VEGF / anti-IL-1 beta antibody of the invention. Kabat numbering of amino acid positions and CDR and FR regions are shown. Amino acid positions contributing to the VEGF paratope and the IL-1 beta paratope identified in Example 8 are highlighted. [Diagram 3]Amino acid sequence of the VL domain of an exemplary anti-VEGF / anti-IL-1 beta antibody of the invention. Kabat numbering of amino acid positions and CDR and FR regions are shown. Amino acid positions contributing to the VEGF paratope and the IL-1 beta paratope identified in Example 8 are highlighted. [Figure 4] Simultaneous antigen binding of anti-VEGF / anti-IL-1beta antibody 1HVL12.85 to VEGF and IL-1beta assessed by SPR according to Example 5. [Diagram 5] Simultaneous antigen binding of anti-VEGF / anti-IL-1beta antibody RO7200394 to VEGF and IL-1beta assessed by SPR according to Example 5. [Figure 6] Simultaneous antigen binding of prior art anti-VEGF / anti-IL-1beta antibody 0032 to VEGF and IL-1beta assessed by SPR according to Example 5. [Figure 7A] Inhibition of VEGF binding to hVEGFR2 in the presence of antibody RO7200394 (Fab fragment), as assessed in Example 6. Receptor binding inhibition was assessed in the presence and absence of IL-1 beta, the target antigen of one of the bispecific antibodies. [Figure 7B] Inhibition of VEGF binding to hVEGFR2 in the presence of prior art antibody 0032 (full length IgG) as assessed in Example 6. Receptor binding inhibition was assessed in the presence and absence of IL-1 beta, the target antigen of one of the bispecific antibodies. [Figure 8A] Inhibition of IL-1 beta binding to IL-1 beta R1 in the presence of antibody RO7200394 (Fab fragment), as assessed in Example 6. Receptor binding inhibition was assessed in the presence and absence of VEGF, one of the target antigens of the bispecific antibody. [Figure 8B] Inhibition of IL-1 beta binding to IL-1 beta R1 in the presence of prior art antibody 0032 (full length IgG) as assessed in Example 6. Receptor binding inhibition was assessed in the presence and absence of VEGF, the target antigen of one of the bispecific antibodies. [Figure 9]Competitive ELISA assessing binding of VEGF121 to VEGF-R1 in the presence of the indicated antibodies, as evaluated in Example 6. [Figure 10] Competitive ELISA assessing binding of VEGF165 to VEGF-R1 in the presence of the indicated antibodies, as evaluated in Example 6. [Figure 11] Results of hydrophobic interaction chromatography (HIC) of the antibodies of the invention evaluated in Example 7. [Figure 12] Hydrophobic interaction chromatography (HIC) results for prior art antibody 0032 (Example 7). [Figure 13] Viscosity of antibody 1HVL12.85, as evaluated in Example 8. [Figure 14] Viscosity of antibody RO7200394, as evaluated in Example 8. DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
[0047] 1.Definition Scientific and technical terms used in connection with the present invention shall have the meanings commonly understood by those skilled in the art unless otherwise specified herein. Furthermore, unless otherwise required by context, singular terms shall include the plural and plural terms shall include the singular. The methods and techniques of the present disclosure are generally performed according to conventional methods well known in the art. Generally, the nomenclature and techniques used in connection with biochemistry, enzymology, molecular cell biology, microbiology, genetics, and protein and nucleic acid chemistry, as well as hybridization, described herein, are well known and commonly used in the art.
[0048] Unless otherwise defined herein, the term "comprising of" is intended to encompass the term "consisting of."
[0049] The term "about" as used herein in connection with a particular value (e.g., temperature, concentration, time, etc.) refers to a range of ±1% of the particular value to which the term "about" refers.
[0050] The term "antibody" as used herein is used in the broadest sense and encompasses a variety of antibody structures, including, but not limited to, monoclonal antibodies, multispecific antibodies (e.g., bispecific antibodies), and antibody fragments so long as they exhibit the desired antigen-binding activity.
[0051] An "isolated" antibody is one that has been separated from a component of its natural environment. In some embodiments, the antibody is purified to greater than 95% or 99% purity, for example, as determined by electrophoretic (e.g., SDS-PAGE, isoelectric focusing (IEF), capillary electrophoresis) or chromatographic (e.g., ion exchange or reverse-phase HPLC) methods. For a review of methods for assessing antibody purity, see, for example, Flatman et al., J. Chromatogr. B 848:79-87 (2007).
[0052] The term "monoclonal antibody" as used herein refers to an antibody obtained from a substantially homogeneous antibody population, i.e., the individual antibodies constituting the population are identical and / or bind to the same epitope, except for variant antibodies (e.g., including naturally occurring mutations or arising during the production of the monoclonal antibody preparation) that may generally be present in minor amounts. In contrast to polyclonal antibody preparations, which typically contain different antibodies directed against different determinants (epitopes), each monoclonal antibody of a monoclonal antibody preparation is directed against a single determinant on the antigen. Thus, the modifier "monoclonal" indicates the character of the antibody as being obtained from a substantially homogeneous population of antibodies, and should not be construed as requiring production of the antibody by any particular method.
[0053] The terms "full length antibody," "intact antibody," and "whole antibody" are used interchangeably herein and refer to an antibody having a structure substantially similar to a native antibody structure or having a heavy chain that includes an Fc region as defined herein.
[0054] The "class" of an antibody refers to the type of constant domain or constant region that its heavy chain has. There are five major classes of antibodies, IgA, IgD, IgE, IgG, and IgM, and some of these are further divided into subclasses (isotypes), such as IgG1, IgG2, IgG3, IgG4, IgA1, and IgA2. In certain embodiments, the antibody is of the IgG1 isotype. In certain embodiments, the antibody is of the IgG1 isotype with the mutations P329G, L234A, and L235A that reduce Fc region effector function. In other embodiments, the antibody is of the IgG2 isotype. In certain embodiments, the antibody is of the IgG4 isotype with the mutation S228P in the hinge region that improves the stability of IgG4 antibodies. The heavy chain constant domains that correspond to the different classes of immunoglobulins are called α, δ, ε, y, and μ, respectively. The light chain of an antibody can be assigned to one of two types, called kappa (κ) and lambda (λ), based on the amino acid sequence of its constant domain.
[0055] The term "Fc region" is used herein to define the C-terminal region of an immunoglobulin heavy chain, including at least a portion of the constant region. This term includes native sequence Fc regions and variant Fc regions. In one embodiment, a human IgG heavy chain Fc region extends from Cys226 or Pro230 to the carboxyl terminus of the heavy chain. Unless otherwise specified herein, the numbering of amino acid residues in an Fc region or constant region is according to the EU numbering system (also called the EU index) as described in Kabat et al., Sequences of Proteins of Immunological Interest, 5th ed. Public Health Service, National Institutes of Health, Bethesda, MD, 1991.
[0056] "Effector function" refers to a biological activity attributable to the Fc region of an antibody, which varies depending on the antibody isotype. Examples of antibody effector functions include C1q binding and complement-dependent cytotoxicity (CDC); Fc receptor binding; antibody-dependent cell-mediated cytotoxicity (ADCC); phagocytosis; downregulation of cell surface receptors (e.g., B cell receptor); and activation of B cells.
[0057] The term "variable region" or "variable domain" refers to the domain of an antibody heavy or light chain that is involved in binding the antibody to an antigen. Usually, the heavy and light chain variable domains (VH, VL, respectively) of a natural antibody have a similar structure, each containing four conserved framework regions (FR) and three hypervariable regions (HVR) (see, for example, Kindt, TJ et al., Kuby Immunology, 5th ed., WH Freeman and Co., NY (2007), p. 91). In the antibody of the present invention, a single pair of VH and VL domains, i.e., a cognate VH / VL pair, specifically binds to its two targets, VEGF and IL-1beta.
[0058] "DutaFab" is a bispecific antibody as disclosed in WO 2012 / 163520. In DutaFab, a single pair of VH and VL domains specifically binds two different epitopes, one paratope containing amino acid residues from CDR-H2, CDR-L1 and CDR-L3, and the other paratope containing amino acid residues from CDR-H1, CDR-H3 and CDR-L2. DutaFab contains two non-overlapping paratopes within the cognate VH / VL pair and can simultaneously bind two different epitopes. DutaFab and methods for their generation by screening libraries containing monospecific Fab fragments are disclosed in WO 2012 / 163520.
[0059] A "human antibody" is an antibody having an amino acid sequence that corresponds to the amino acid sequence of an antibody produced by a human or a human cell, or of an antibody derived from a non-human source that utilizes the human antibody repertoire, or to a sequence encoding another human antibody. This definition of a human antibody specifically excludes humanized antibodies which contain non-human antigen-binding residues.
[0060] A "human consensus framework" is a framework that represents the most commonly occurring amino acid residues in a selection of human immunoglobulin VL or VH framework sequences. Generally, the selection of human immunoglobulin VL or VH sequences is made from a subgroup of variable domain sequences. Generally, the subgroup of sequences is a subgroup as in Kabat et al., Sequences of Proteins of Immunological Interest, 5th ed., NIH Publication 91-3242, Bethesda MD (1991), vols. 1-3. In one embodiment, for VL, the subgroup is subgroup kappa I of Kabat et al., supra. In one embodiment, for VH, the subgroup is subgroup III of Kabat et al., supra.
[0061] "Antibody fragment" refers to a molecule other than an intact antibody that contains a portion of an intact antibody that binds to an antigen to which the intact antibody binds. Examples of antibody fragments include, but are not limited to, Fv, Fab, Fab', Fab'-SH, F(ab')2; diabodies; linear antibodies; single-chain antibody molecules (e.g., scFv); and multispecific antibodies formed from antibody fragments.
[0062] "Paratope" or "antigen-binding site", as used interchangeably herein, refers to the part of an antibody that recognizes and binds to an antigen. A paratope is formed by multiple individual amino acid residues from the heavy and light chain variable domains of an antibody, which are arranged in spatial proximity in the tertiary structure of the Fv region. The antibody of the present invention contains two "non-overlapping" paratopes in one cognate VH / VL pair. "Non-overlapping" means that none of the amino acids contained in one of the two paratopes are contained in the other paratope.
[0063] As used herein, a "VEGF paratope" is a paratope or antigen binding site that binds to VEGF. The VEGF paratope of an antibody of the invention comprises amino acid residues from CDR-H2, CDR-L1 and CDR-L3 of the antibody.
[0064] As used herein, an "IL-1 beta paratope" is a paratope or antigen binding site that binds IL-1 beta. The IL-1 beta paratope of an antibody of the invention comprises amino acid residues from CDR-H1, CDR-H3 and CDR-L2 of the antibody.
[0065] The term "VEGF," as used herein, unless otherwise specified, refers to any naturally occurring VEGF from any vertebrate source, including mammals such as primates (e.g., humans) and rodents (e.g., mice and rats). The term encompasses "full-length," unprocessed VEGF as well as any form of VEGF that results from processing within a cell. The term also encompasses naturally occurring variants of VEGF, such as splice variants or allelic variants. An exemplary amino acid sequence of human VEGF is set forth in SEQ ID NO:26.
[0066] The terms "anti-VEGF antibody" and "antibody that binds VEGF" refer to an antibody that can bind VEGF with sufficient affinity such that it is useful as a diagnostic and / or therapeutic agent in targeting VEGF. In one embodiment, the extent of binding of the anti-VEGF antibody to unrelated non-VEGF proteins is less than about 10% of the binding of the antibody to VEGF, e.g., as measured by surface plasmon resonance (SPR). In certain embodiments, an antibody that binds VEGF has a dissociation constant (K D ) The antibody has a K D An antibody is said to "specifically bind" to VEGF if it has the following structure:
[0067] The term "IL-1 beta" as used herein refers to any naturally occurring IL-1 beta from any vertebrate source, including mammals such as primates (e.g., humans) and rodents (e.g., mice and rats), unless otherwise specified. The term encompasses "full-length" unprocessed IL-1 beta as well as any form of IL-1 beta that results from processing within a cell. The term also encompasses naturally occurring variants of IL-1 beta, such as splice variants or allelic variants. An exemplary amino acid sequence of human IL-1 beta is set forth in SEQ ID NO:27.
[0068] The terms "anti-IL-1 beta antibody" and "antibody that binds to anti-IL-1 beta" refer to an antibody that can bind to anti-IL-1 beta with sufficient affinity such that it is useful as a diagnostic and / or therapeutic agent in targeting anti-IL-1 beta. In one embodiment, the extent of binding of the anti-IL-1 beta antibody to unrelated non-IL-1 beta proteins is less than about 10% of the binding of the antibody to anti-IL-1 beta, e.g., as measured by surface plasmon resonance (SPR). In certain embodiments, an antibody that binds to IL-1 beta has a dissociation constant (K D ) The antibody has a K D An antibody is said to "specifically bind" to anti-IL-1beta if it has the following structure:
[0069] By an antibody of the invention "binds simultaneously to human VEGF and human IL-1 beta" is meant that (a) an antibody Fab fragment of the invention that binds to human IL-1 beta also specifically binds to human VEGF (as well), and (b) an antibody Fab fragment of the invention that binds to human VEGF also specifically binds to human IL-1 beta (as well). Simultaneous binding can be assessed by methods known in the art, for example, surface plasmon resonance as described herein.
[0070] The term "complementarity determining region" or "CDR" as used herein refers to each of the regions of an antibody variable domain that are hypervariable in sequence and contain antigen contact residues. Generally, antibodies contain six CDRs: three in the VH domain (CDR-H1, CDR-H2, CDR-H3) and three in the VL domain (CDR-L1, CDR-L2, CDR-L3). Unless otherwise specified, CDR residues and other residues in the variable domain (e.g., FR residues) are numbered herein according to the Kabat numbering system (Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD, 1991).
[0071] As used herein, "framework" or "FR" refers to variable domain amino acid residues other than the CDR residues. The framework of a variable domain is generally composed of four FR domains: FR1, FR2, FR3, and FR4. Thus, the CDR and FR amino acid sequences generally appear as follows: (a) in the VH domain, FR1-CDR-H1-FR2-CDR-H2-FR3-CDR-H3-FR4; and (b) in the VL domain, FR1-CDR-L1-FR2-CDR-L2-FR3-CDR-L3-FR4.
[0072] According to the Kabat numbering system used herein, the framework and CDR regions are located in the following regions of the variable domain:
[0073] [Table A]
[0074] The amino acid positions according to the Kabat numbering system referred to herein are shown in alignment with the amino acid sequences of the antibodies of the invention in Figure 2. Reference to an amino acid at a particular position within an amino acid sequence is made herein by describing the amino acid and amino acid position as known in the art, e.g., "E2" refers to a glutamic acid residue located at Kabat position 2 of the amino acid sequence of the respective antibody domain.
[0075] "Affinity" refers to the strength of the sum of non-covalent interactions between a single binding site of a molecule (e.g., an antibody) and its binding partner (e.g., an antigen). As used herein, unless otherwise specified, "binding affinity" refers to the intrinsic binding affinity that reflects a 1:1 interaction between members of a binding pair (e.g., an antibody and an antigen). The affinity of a molecule X for its partner Y is generally measured by the dissociation constant (K D ) Affinity can be measured by common methods known in the art, including those described herein. Specific exemplary embodiments for measuring binding affinity are described herein.
[0076] The term "epitope" refers to a proteinaceous or non-proteinaceous site on an antigen to which an antibody binds. An epitope may be formed from a contiguous stretch of amino acids (linear epitope) or may comprise discontinuous amino acids that are in spatial proximity, for example by antigen folding (i.e., by tertiary folding of a proteinaceous antigen) (conformational epitope). Linear epitopes are typically bound by antibodies even after exposure of the proteinaceous antigen to a denaturing agent, whereas structural epitopes are typically destroyed upon treatment with a denaturing agent. An epitope comprises at least 3, at least 4, at least 5, at least 6, at least 7, or at least 8-10 amino acids in a unique spatial conformation.
[0077] Screening for antibodies that bind to a specific epitope (i.e., antibodies that bind the same epitope) can be performed using methods routine in the art, such as, for example, but not limited to, alanine scanning, peptide blotting (see Meth. Mol. Biol. 248 (2004) 443-463), peptide truncation analysis, epitope excision, epitope extraction, chemical modification of antigens (see Prot. Sci. 9 (2000) 487-496), and cross-blocking (see "Antibodies", Harlow and Lane (Cold Spring Harbor Press, Cold Spring Harb., NY)).
[0078] Antigen Structure-based Antibody Profiling (ASAP), also known as Modification-Assisted Profiling (MAP), allows for dividing a number of monoclonal antibodies that specifically bind to VEGF or IL-1 beta into groups (bins) based on the binding profile of each antibody among the multiple antibodies to a chemically or enzymatically modified antigen surface (see, for example, US Patent Application Publication No. 2004 / 0101920). The antibodies in each group bind to the same epitope, which may be a unique epitope that is distinct or partially overlapping with epitopes represented in other bins.
[0079] Also, competitive binding can be used to easily determine whether an antibody binds to the same epitope on VEGF or IL-1 beta or competes for binding with a reference antibody of the present invention. For example, an "antibody that binds to the same epitope on VEGF and IL-1 beta" as a reference antibody refers to an antibody that blocks the binding of the reference antibody to its antigen by 50% or more in the respective competitive assays, and conversely, the reference antibody blocks the binding of the antibody to its antigen by 50% or more in the respective competitive assays. Also, for example, to determine whether an antibody binds to the same epitope as a reference antibody, the reference antibody can be bound to VEGF or IL-1 beta under saturating conditions. After removing excess reference antibody, the ability of the antibody in question to bind to VEGF or IL-1 beta is evaluated. If the antibody in question can bind to VEGF or IL-1 beta after saturation binding of the reference antibody, it can be concluded that the antibody in question binds to a different epitope than the reference antibody. However, if the antibody in question cannot bind to VEGF or IL-1 beta after saturation binding of the reference antibody, the antibody in question is likely to bind to the same epitope as the epitope bound by the reference antibody. Routine experiments can be used to check whether the antibody in question binds to the same epitope or if binding is simply hindered for steric reasons (e.g. ELISA, RIA, surface plasmon resonance, flow cytometry, or any other quantitative or qualitative antibody binding assay available in the art). This assay should be performed in two setups, i.e., with both antibodies being saturating antibodies. If in both setups only the first (saturating) antibody can bind to VEGF or IL-1 beta, it can be concluded that the antibody in question and the reference antibody compete for binding to VEGF or IL-1 beta.
[0080] In some embodiments, two antibodies are considered to bind the same or overlapping epitope if a 1-, 5-, 10-, 20-, or 100-fold excess of one antibody inhibits binding of the other antibody by at least 50%, at least 75%, at least 90%, or greater than 99%, as measured in a competitive binding assay (see, e.g., Junghans et al., Cancer Res. 50 (1990) 1495-1502).
[0081] In some embodiments, two antibodies are considered to bind to the same epitope if essentially all amino acid mutations in the antigen that reduce or eliminate binding of one antibody also reduce or eliminate binding of the other. Two antibodies are considered to have "overlapping epitopes" if only the subset of amino acid mutations that reduce or eliminate binding of one antibody also reduce or eliminate binding of the other antibody.
[0082] "Percent (%) amino acid sequence identity" to a reference polypeptide sequence is defined as the percentage of amino acid residues in a candidate sequence that are identical to those in the reference polypeptide, after aligning the sequences and introducing gaps, if necessary, to obtain the maximum percent sequence identity, without considering any conservative substitutions as part of the sequence identity. Alignment to determine percent amino acid sequence identity can be accomplished in a variety of ways within the skill of the art, using publicly available computer software, such as, for example, BLAST, BLAST-2, Clustal W, Megalign (DNASTAR) software, or the FASTA program package. Those skilled in the art can determine appropriate parameters for aligning sequences, including any algorithms required to achieve maximum alignment over the full length of the sequences being compared. Alternatively, the sequence comparison computer program ALIGN-2 can be used to generate percent identity values. The ALIGN-2 sequence comparison computer program was written by Genentech, Inc., and its source code together with user documentation has been submitted to the U.S. Copyright Office, Washington, DC, 20559, where it is registered under U.S. Copyright Registration No. TXU510087, and is also described in WO 2000 / 005319.
[0083] However, unless otherwise indicated, % amino acid sequence identity values herein are generated using the ggsearch program of the FASTA package version 36.3.8c or later with the BLOSUM50 comparison matrix. The FASTA program package was created by WR Pearson and DJ Lipman (1988), "Improved Tools for Biological Sequence Analysis", PNAS 85:2444-2448; WR Pearson (1996) "Effective protein sequence comparison" Meth. Enzymol. 266:227-258; and Pearson et al. (1997) Genomics 46:24-36, and is publicly available at www.fasta.bioch.virginia.edu / fasta_www2 / fasta_down.shtml or www.ebi.ac.uk / Tools / sss / fasta. Alternatively, these sequences can be compared using the public server accessible at fasta.bioch.virginia.edu / fasta_www2 / index.cgi, by performing a global (rather than local) alignment using the ggsearch(global protein:protein) program and default options (BLOSUM50; open:-10; ext:-2; Ktup=2). The percent amino acid identity is given in the output alignment header.
[0084] The term "nucleic acid molecule" or "polynucleotide" includes any compound and / or substance that comprises a polymer of nucleotides. Each nucleotide is composed of a base, specifically a purine or pyrimidine base (i.e., cytosine (C), guanine (G), adenine (A), thymine (T) or uracil (U)), a sugar (i.e., deoxyribose or ribose), and a phosphate group. Often, nucleic acid molecules are described by the sequence of bases, whereby the bases represent the primary (linear) structure of the nucleic acid molecule. The sequence of bases is typically represented from 5' to 3'. As used herein, the term nucleic acid molecule encompasses deoxyribonucleic acid (DNA), including, for example, complementary DNA (cDNA) and genomic DNA, ribonucleic acid (RNA), particularly messenger RNA (mRNA), synthetic forms of DNA or RNA, and mixed polymers containing two or more of these molecules. Nucleic acid molecules may be linear or circular. Furthermore, the term nucleic acid molecule includes both sense and antisense strands, as well as single- and double-stranded forms. Furthermore, the nucleic acid molecules described herein can include natural or non-natural nucleotides. Examples of non-natural nucleotides include modified nucleotide bases with derivatized sugar or phosphate backbone linkages, or chemically modified residues. Nucleic acid molecules also encompass DNA and RNA molecules that are suitable as vectors for direct expression of the antibodies of the invention in vitro and / or in vivo, e.g., in a host or patient. Such DNA (e.g., cDNA) or RNA (e.g., mRNA) vectors may be modified or unmodified. For example, mRNA can be chemically modified to enhance the stability of the RNA vector and / or the expression of the encoded molecule, and the mRNA can be injected into a subject to generate antibodies in vivo (see, e.g., Stadler et al, Nature Medicine 2017, online edition June 12, 2017, doi:10.1038 / nm.4356, or EP 2101823 B1).
[0085] An "isolated" nucleic acid refers to a nucleic acid molecule that has been separated from a component of its natural environment. Isolated nucleic acids include nucleic acid molecules that are contained in cells that normally contain the nucleic acid molecule, but where the nucleic acid molecule is present extrachromosomally or in a chromosomal location that is different from its natural chromosomal location.
[0086] An "isolated nucleic acid encoding" an antibody refers to one or more nucleic acid molecules (or fragments thereof) encoding the antibody heavy and light chains, including such nucleic acid molecule(s) in a single vector or separate vectors and such nucleic acid molecules present in one or more locations in a host cell.
[0087] The term "vector" as used herein refers to a nucleic acid molecule capable of propagating another nucleic acid to which it is linked. This term includes vectors as self-replicating nucleic acid structures as well as vectors integrated into the genome of a host cell into which they are introduced. Certain vectors are capable of directing the expression of a nucleic acid to which they are operatively linked. Such vectors are referred to herein as "expression vectors."
[0088] The terms "host cell," "host cell line," and "host cell culture" are used interchangeably and refer to cells into which exogenous nucleic acid has been introduced, including the progeny of such cells. Host cells include "transformants" and "transformed cells," which include the primary transformed cell and its progeny, regardless of the number of passages. The progeny may not be completely identical in nucleic acid content to the parent cell, but may contain mutations. Included herein are mutant progeny that have the same function or biological activity as screened or selected for in the originally transformed cell.
[0089] The term "pharmaceutical composition" or "pharmaceutical formulation" refers to a preparation in a form such that the biological activity of the active ingredient contained therein is effective, and which does not contain additional ingredients that are unacceptably toxic to a subject to which the pharmaceutical composition is administered.
[0090] A "pharmaceutically acceptable carrier" refers to an ingredient in a pharmaceutical composition or formulation, other than an active ingredient, that is non-toxic to a subject. Pharmaceutically acceptable carriers include, but are not limited to, buffers, excipients, stabilizers, or preservatives.
[0091] An "effective amount" of an agent, eg, a pharmaceutical composition, refers to an amount effective, at dosages and for periods of time necessary, to achieve the desired therapeutic or prophylactic result.
[0092] An "individual" or "subject" is a mammal. Mammals include, but are not limited to, domestic animals (e.g., cows, sheep, cats, dogs, and horses), primates (e.g., humans and non-human primates such as monkeys), rabbits, and rodents (e.g., mice and rats). In certain embodiments, the individual or subject is a human.
[0093] As used herein, "treatment" (and grammatical variations such as "treat" or "treating") refers to a clinical intervention that attempts to alter the natural course of a disease in the individual being treated, and can be performed prophylactically or during the course of clinical pathology. Desirable effects of treatment include, but are not limited to, preventing the onset or recurrence of disease, alleviating symptoms, diminishing any direct or indirect pathological consequences of the disease, preventing metastasis, slowing the rate of disease progression, ameliorating or alleviating the pathology, and achieving remission or improving prognosis. In some embodiments, the antibodies of the invention are used to slow the onset of disease or progression of disease.
[0094] The term "ocular disease" as used herein includes any ocular disease associated with pathological neovascularization and / or atrophy. Ocular diseases can be characterized by altered or unregulated proliferation and / or invasion of new blood vessels into structures of ocular tissues such as the retina or cornea. Ocular diseases can be characterized by atrophy of retinal tissues (photoreceptors and the underlying retinal pigment epithelium (RPE) and choriocapillaris). Non-limiting ocular diseases include, for example, AMD (e.g., wet AMD, dry AMD, intermediate AMD, advanced AMD, and geographic atrophy (GA)), macular degeneration, macular edema, DME (e.g., focal DME that does not involve the fovea and diffuse DME that involves the fovea), retinopathies, diabetic retinopathy (DR) (e.g., proliferative DR (PDR), non-proliferative DR (NPDR), and high altitude DR), other ischemia-related retinopathies, ROP, retinal vein occlusion ( RVO) (e.g. central retinal vein occlusion (CRVO) and branch retinal vein occlusion (BRVO)), CNV (e.g. myopic CNV), corneal neovascularization, diseases associated with corneal neovascularization, retinal neovascularization, diseases associated with retinal / choroidal neovascularization, central serous retinopathy (CSR), pathological myopia, von Hippel-Lindau disease, ocular histoplasmosis, FEVR, Coats disease, Norrie disease, osteoporosis-pseudoglioma syndrome (OPPG) retinal abnormalities associated with, subconjunctival hemorrhage, skin flushing, ocular neovascular diseases, neovascular glaucoma, retinitis pigmentosa (RP), hypertensive retinopathy, retinal angiomatosis proliferation, macular telangiectasia, iris neovascularization, intraocular neovascularization, retinal degeneration, cystoid macular edema (CME), vasculitis, optic disc edema, retinitis including but not limited to CMV retinitis, intraocular melanoma, retinoblastoma, conjunctivitis (e.g., infectious conjunctivitis and non-infectious (e.g., allergy-related) In some embodiments, the eye disease includes, but is not limited to, ocular neovascularization, ocular vascular leakage, retinal edema, retinal atrophy, ocular ophthalmopathy ...Further exemplary eye diseases include diseases associated with retinoschisis (abnormal division of the retinal neurosensory layer), flushing (angular neovascularization), and diseases caused by abnormal proliferation of fibrous or vascular tissue, including all forms of proliferative vitreoretinopathy. Exemplary diseases associated with corneal neovascularization include, but are not limited to, epidemic keratoconjunctivitis, vitamin A deficiency, contact lens overwear, atopic keratitis, superior limbic keratitis, pterygium keratitis sicca, Sjogren's syndrome, acne rosacea, phlyctenosis, syphilis, mycobacterial infection, fatty degeneration, chemical burns, bacterial ulcers, fungal ulcers, herpes simplex infection, herpes zoster infection, protozoal diseases, Kaposi's sarcoma, Mooren's corneal ulcer, Therrien's peripheral corneal degeneration, marginal corneal melt, rheumatoid arthritis, systemic lupus, polyarteritis nodosa, trauma, Wegener's granulomatosis, scleritis, Stevens-Johnson syndrome, pemphigoid, radial keratotomy, and corneal graft rejection. Exemplary diseases associated with choroidal neovascularization and defects in the retinal vasculature, such as increased vascular leakage, aneurysms, and capillary dropout, include, but are not limited to, diabetic retinopathy, macular degeneration, sickle cell anemia, skin rash, syphilis, pseudoxanthoma elasticum, Paget's disease, venous occlusion, arterial occlusion, carotid occlusive disease, chronic uveitis / vitreous inflammation, mycobacterial infections, Lyme disease, systemic lupus erythematosus, retinopathy of prematurity, retinal edema (including macular edema), Eales' disease, Behcet's disease, infections causing retinitis or choroiditis (e.g., multifocal choroiditis), presumed ocular histoplasmosis, Best's disease (vitelliform macular degeneration), myopia, optic fovea, pars planitis, retinal detachment (e.g., chronic retinal detachment), hyperviscosity syndrome, toxoplasmosis, trauma, and post-laser complications. Exemplary diseases associated with atrophy of retinal tissue (photoreceptors and the underlying RPE) include, but are not limited to, atrophic or non-exudative AMD (e.g., geographic atrophy or advanced dry AMD), macular atrophy (e.g., atrophy associated with neovascularization and / or geographic atrophy), diabetic retinopathy, Stargardt's disease, Sorsby Fundus Dystrophy, retinoschisis, and retinitis pigmentosa.
[0095] The term "package insert" is used to refer to instructions customarily included in the commercial packaging of a therapeutic product, which contain information about the indications, usage, dosage, administration, concomitant therapy, contraindications and / or precautions regarding the use of such therapeutic product.
[0096] 2. Detailed Description of the Preferred Embodiments of the Invention In one aspect, the invention is based in part on the provision of bispecific antibodies for therapeutic use. In a particular embodiment, an antibody is provided that binds to human VEGF and human IL-1 beta. The antibody of the invention is useful, for example, in the diagnosis or treatment of vascular diseases, such as ocular vascular diseases.
[0097] Exemplary Antibodies that Bind Human VEGF and Human IL-1beta In one aspect, the invention provides an antibody that binds human VEGF and human IL-1 beta. In one aspect, provided is an isolated antibody that binds human VEGF and human IL-1 beta. In one aspect, the invention provides an antibody that specifically binds human VEGF and human IL-1 beta.
[0098] In a particular embodiment, an antibody that binds human VEGF and human IL-1 beta is provided, the antibody comprising within one cognate pair of a VL domain and a VH domain an IVEGF paratope (i.e., an antigen binding site that binds VEGF) and an IL-1 beta paratope (i.e., an antigen binding site that binds IL-1 beta), the VEGF paratope comprises amino acid residues from CDR-H2, CDR-L1 and CDR-L3 of said antibody and the IL-1 beta paratope comprises amino acid residues from CDR-H1, CDR-H3 and CDR-L2 of said antibody; and / or the pair of variable light and heavy domains simultaneously binds human VEGF and human IL-1 beta; and / or no amino acids contained in the VEGF paratope are contained in the IL-1 beta paratope; and / or none of the amino acids contained in the IL-1 beta paratope are contained in the VEGF paratope; and / or the antibody binds to the same epitope on human VEGF and epitope on human IL-1 beta as an antibody having a variable heavy domain of SEQ ID NO: 11 and a variable light domain of SEQ ID NO: 12; and / or The antibody Fab fragment of the antibody has (i) a K of less than 10 pM as measured by surface plasmon resonance. D and (ii) binds to human VEGF121 with a K of less than 30 pM as measured by surface plasmon resonance. D binds to human IL-1 beta; and / or the antibody Fab fragment of said antibody exhibits an aggregation onset temperature of 70°C or higher; and / or the antibody Fab fragment of said antibody exhibits a melting temperature of greater than 80° C. as measured by dynamic light scattering; and / or the binding of an antibody Fab fragment of said antibody to human VEGF inhibits the binding of VEGF to VEGFR2 with an IC50 of less than 50 nM as measured by surface plasmon resonance, and the binding of an antibody Fab fragment of said antibody to human IL-1 beta inhibits the binding of IL-1 beta to IL-1 beta R1 with an IC50 of less than 30 nM as measured by surface plasmon resonance; antibody.
[0099] In another aspect, the present invention provides an antibody comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8.
[0100] In another aspect, the invention provides an antibody comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30, and (ii) FR3 comprising amino acid residues R66, R83, and K94; (e) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16; (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17; (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8; and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system.
[0101] In another aspect, the invention provides an antibody comprising a VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98 and D101, and a VL domain comprising amino acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94 and Y96, wherein the numbering of the VH and VL domains is according to the Kabat numbering system. In one embodiment, the antibody comprises a VEGF paratope comprising amino acid residues D55, H56, Y58, T61, K62, F63, I64, R66, and R83 in the VH domain, and amino acid residues I2, Y27, W27a, S27c, S27d, E67, D68, Q69, R92, Y93, H94, and Y96 in the VL domain, and an IL-1 beta paratope comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, K94, D95, V96, F98, and D101 in the VH domain, and amino acid residues L32, Y49, D50, Y53, K54, L56, G57, Y91 in the VL domain.
[0102] In another aspect, the invention provides an antibody comprising: (a) a VH domain comprising an amino acid sequence having at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% sequence identity to the amino acid sequence of SEQ ID NO: 11; and (b) a VL domain comprising an amino acid sequence having an amino acid sequence having at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% sequence identity to the amino acid sequence of SEQ ID NO: 12.
[0103] In another aspect, the present invention relates to a VH domain comprising: (a) an amino acid sequence having at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 95%, 96%, 97%, 98% or 99% sequence identity to the amino acid sequence of SEQ ID NO:11, the VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98 and D101; and (b) a VH domain comprising the amino acid sequence of SEQ ID NO:12. and a VL domain comprising an amino acid sequence having at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 95%, 96%, 97%, 98% or 99% sequence identity to an amino acid sequence of IL-16, wherein the VL domain comprises amino acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94 and Y96, wherein the numbering of the VH and VL domains is according to the Kabat numbering system.
[0104] In another aspect, the present invention relates to an antibody comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) a CDR-H1 comprises the amino acid sequence of SEQ ID NO: 11, and (b) a CDR-H2 comprises the amino acid sequence of SEQ ID NO: 12. and (b) a VH domain comprising an amino acid sequence having at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% sequence identity to the amino acid sequence of SEQ ID NO: 12.
[0105] In another aspect, the present invention provides an antibody comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein the antibody has a VL domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 11 and at least 85%, 86%, 87%, 88%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 100%, 101%, 102%, 103%, 104%, 105%, 106%, 107%, 108%, 109%, 1109%, 11109, 11209, 11309, 11409, 11509, 11609, 11709, 11809, 11909, 118109, 119109, 119209, 119309, 119409, 119509, 119609, 119709, 119809, 119909, 12009, 12009, 12109, 12209, 12309, 12409, 125 97%, 98% or 99% sequence identity to the amino acid sequence of SEQ ID NO: 12, wherein the VL domain comprises amino acid residues I2, Y49, G57, E67, D68 and Q69, wherein the VH and VL domains are numbered according to the Kabat numbering system.
[0106] In another aspect, the present invention provides a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30, and (ii) FR3 comprising amino acid residues R66, R83, and K94; (e) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16; (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17; (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8; and (h) a CDR-L4 comprising the amino acid sequence of SEQ ID NO: 8; and a VL domain comprising a human light chain framework having a FR3 comprising G57, E67, D68, and Q69, wherein the VH and VL domains are numbered according to the Kabat numbering system; (a) the VH domain comprises an amino acid sequence having at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% sequence identity to the amino acid sequence of SEQ ID NO:11, and (b) the VL domain comprises an amino acid sequence having at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% sequence identity to the amino acid sequence of SEQ ID NO:12.
[0107] In another aspect, the present invention provides an antibody comprising: (a) a VH domain comprising the amino acid sequence of SEQ ID NO: 11 having 1 to 15, 1 to 10, or 1 to 5 amino acid substitutions; and (b) a variable light chain domain comprising the amino acid sequence of SEQ ID NO: 12 having 1 to 15, 1 to 10, or 1 to 5 amino acid substitutions.
[0108] In another aspect, the present invention provides an antibody comprising: (a) a VH domain comprising the amino acid sequence of SEQ ID NO: 11 having 1 to 15, 1 to 10, or 1 to 5 amino acid substitutions, wherein the amino acid substitutions are located at positions 3 to 25, 36 to 49, 97 to 82c, 84 to 93, or 103 to 113 of SEQ ID NO: 11; and (b) a variable light chain domain comprising the amino acid sequence of SEQ ID NO: 12 having 1 to 15, 1 to 10, or 1 to 5 amino acid substitutions, wherein the amino acid substitutions are located at positions 1, 4, 6, 8 to 23, 35 to 48, 58 to 66, 70 to 88, or 98 to 107 of SEQ ID NO: 12, wherein the VH and VL domains are numbered according to the Kabat numbering system.
[0109] In another aspect, the present invention provides an antibody comprising a VH domain comprising (a) CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises the amino acid sequence of SEQ ID NO: 11 with 1 to 15, 1 to 10, or 1 to 5 amino acid substitutions, and (b) the variable light chain domain comprises the amino acid sequence of SEQ ID NO: 12 with 1 to 15, 1 to 10, or 1 to 5 amino acid substitutions.
[0110] In another aspect, the present invention provides a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30; (ii) FR3 comprising amino acid residues R66, R83, and K94; (e) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16; (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17; (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8; and and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the VH and VL domains are numbered according to the Kabat numbering system; (a) the VH domain comprises the amino acid sequence of SEQ ID NO: 11 with 1 to 15, 1 to 10 or 1 to 5 amino acid substitutions, and (b) the variable light chain domain comprises the amino acid sequence of SEQ ID NO: 12 with 1 to 15, 1 to 10 or 1 to 5 amino acid substitutions.
[0111] In some embodiments, the present invention provides antibodies comprising a VH domain having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% sequence identity to the amino acid sequence of SEQ ID NO: 11. In certain embodiments, VH sequences having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identity contain substitutions (e.g., conservative substitutions), insertions or deletions relative to the reference sequence, but antibodies that bind human VEGF and human IL-1 beta comprising the sequence retain the ability to bind human VEGF and human IL-1 beta. In certain embodiments, a total of 1 to 10 amino acids are substituted, inserted and / or deleted in SEQ ID NO: 11. In certain embodiments, the substitutions, insertions or deletions occur in regions outside the CDRs (i.e., within the FRs). In a particular aspect, the VH comprises (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15.
[0112] In some embodiments, the present invention provides antibodies comprising a VL domain having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% sequence identity to the amino acid sequence of SEQ ID NO: 12. In certain embodiments, VL sequences having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identity contain substitutions (e.g., conservative substitutions), insertions or deletions relative to the reference sequence, but antibodies that bind human VEGF and human IL-1 beta containing the sequence retain the ability to bind human VEGF and human IL-1 beta. In certain embodiments, a total of 1 to 10 amino acids are substituted, inserted and / or deleted in SEQ ID NO: 12. In certain embodiments, the substitutions, insertions or deletions occur in regions outside the CDRs (i.e., within the FRs). In a particular aspect, the VL comprises (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8.
[0113] In another embodiment, an antibody that binds human VEGF and human IL-1 beta is provided, wherein the antibody comprises a VH sequence as in any of the embodiments provided above, and a VL sequence as in any of the embodiments provided above. In one embodiment, the antibody comprises the VH and VL sequences of SEQ ID NO:11 and SEQ ID NO:12, respectively, including post-translational modifications of these sequences.
[0114] In another embodiment, an antibody that binds to human VEGF and human IL-1 beta is provided, wherein the antibody comprises a heavy chain amino acid sequence of SEQ ID NO:20 and a light chain amino acid sequence of SEQ ID NO:19.
[0115] In another aspect, an antibody that binds to human VEGF and human IL-1 beta is provided, wherein the antibody comprises a heavy chain amino acid sequence of SEQ ID NO:18 and a light chain amino acid sequence of SEQ ID NO:19.
[0116] In a further embodiment of the invention, the antibody that binds human VEGF and human IL-1 beta according to any of the above embodiments is a monoclonal antibody. In one embodiment, the antibody that binds human VEGF and human IL-1 beta is an antibody fragment, such as an Fv, Fab, Fab', scFv, diabody or F(ab') 2 In another embodiment, the antibody is a full-length antibody.
[0117] In a further aspect, an antibody that binds human VEGF and human IL-1 beta according to any of the above aspects may incorporate any of the features as described in Sections 1 to 7 below, either alone or in combination.
[0118] 1. Antibody affinity In certain embodiments, the antibodies provided herein have a dissociation constant (K D In certain embodiments, antibodies that bind IL-1 beta bind to VEGF with a dissociation constant (K) of ≦1 nM, ≦0.1 nM, or ≦0.03 nM. D ).
[0119] In one embodiment, K D is measured using a BIACORE® surface plasmon resonance assay.
[0120] For example, the K D is measured in an assay using a BIACORE®-2000 or BIACORE®-3000 (BIAcore, Piscataway, NJ) performed at 25°C with VEGF121 immobilized on a C1 chip of approximately 10 response units (RU). For kinetic measurements, two-fold serial dilutions of Fab (1.2-100 nM) are injected into HBS-P+ (10 mM HEPES, 150 mM NaCl pH 7.4, 0.05% surfactant P20) at 25°C with a flow rate of approximately 30 μl / min. The association rate (k on ) and dissociation rate (ko ff The equilibrium dissociation constant (K) is calculated using a simple one-to-one Langmuir binding model (BIACORE® Evaluation Software version 3.2) by simultaneously fitting the association and dissociation sensorgrams. D ) is k off / k on It is calculated as a ratio. See, e.g., Chen et al., J. Mol. Biol. 293:865-881 (1999).
[0121] For example, the K D is measured in an assay using a BIACORE®-2000 or BIACORE®-3000 (BIAcore, Piscataway, NJ) performed at 25°C with bispecific antibodies immobilized on a C1 chip of approximately 20 response units (RU). For kinetic measurements, two-fold serial dilutions of human IL-1 beta (0.74-60 nM) are injected into HBS-P+ (10 mM HEPES, 150 mM NaCl pH 7.4, 0.05% surfactant P20) at 25°C with a flow rate of approximately 30 μl / min. The association rate (k on ) and dissociation rate (ko ffThe equilibrium dissociation constant (K) is calculated using a simple one-to-one Langmuir binding model (BIACORE® Evaluation Software version 3.2) by simultaneously fitting the association and dissociation sensorgrams. D ) is k off / k on It is calculated as a ratio. See, e.g., Chen et al., J. Mol. Biol. 293:865-881 (1999).
[0122] 2. Antibody fragment In certain embodiments, the antibodies provided herein are antibody fragments.
[0123] In one embodiment, the antibody fragment is a Fab, Fab', Fab'-SH or F(ab') 2 The term "Fab fragment" thus refers to an antibody fragment that contains a light chain containing a VL domain and a CL domain, and a heavy chain fragment containing a VH domain and a CH1 domain. "Fab' fragments" differ from Fab fragments by the addition of residues at the carboxy terminus of the CH1 domain, including one or more cysteines from the antibody hinge region. Fab'-SH is a Fab' fragment in which the cysteine residue(s) of the constant domain bear a free thiol group. Pepsin treatment produces F(ab') fragments with two antigen-binding sites (two Fab fragments) and part of the Fc region. 2 The present invention provides Fab and F(ab') fragments that contain salvage receptor binding epitope residues and have increased in vivo half-lives. 2 For a discussion of fragments, see US Pat. No. 5,869,046.
[0124] Antibody fragments can be produced by a variety of techniques, including but not limited to, proteolytic digestion of intact antibodies as well as recombinant production by recombinant host cells (e.g., E. coli, CHO), as described herein.
[0125] 3.Thermal stability The antibody provided herein exhibits excellent thermal stability.In certain embodiments, the Fab fragment of the antibody provided herein exhibits an aggregation onset temperature of more than 70°C.In certain embodiments, the Fab fragment of the antibody provided herein exhibits a melting temperature of more than 80°C as measured by dynamic light scattering.
[0126] 4. Library-derived antibodies In certain embodiments, the antibody provided herein is derived from a library. The antibody of the present invention can be isolated by screening a combinatorial library for an antibody with desired activity(ies). Methods for screening combinatorial libraries are reviewed, for example, in Lerner et al., Nature Reviews 16:498-508 (2016). For example, various methods are known in the art for creating phage display libraries and screening such libraries for antibodies with desired binding properties. Such methods are reviewed, for example, in Frenzel et al., mAbs 8:1177-1194 (2016); Bazan et al., Human Vaccines and Immunotherapeutics 8:1817-1828 (2012) and Zhao et al., Critical Reviews in Biotechnology 36:276-289 (2016), as well as Hoogenboom et al., Methods in Molecular Biology 178:1-37 (O'Brien et al., ed., Human Press, Totowa, NJ, 2001), and Marks and Bradbury, Methods in Molecular Biology 248:161-175 (Lo, ed., Human Press, Totowa, NJ, 2003).
[0127] In a particular phage display method, repertoires of VH and VL genes are individually cloned by polymerase chain reaction (PCR) and randomly recombined in a phage library, which can then be screened for antigen-binding phages, as described by Winter et al., Annual Review of Immunology 12:433-455 (1994). Phages usually display antibody fragments, either as single-chain Fv (scFv) fragments or Fab fragments. Libraries from immunized sources provide high affinity antibodies to immunogens without the need to construct hybridomas. Alternatively, naive repertoires can be cloned (e.g., from humans) to provide a single source of antibodies to a wide range of non-self and self antigens without any immunization, as described by Griffiths et al., EMBO Journal 12:725-734 (1993). Additionally, naive libraries can be artificially generated by cloning unrearranged V gene segments from stem cells and using PCR primers containing random sequences to encode the highly variable CDR3 regions and achieve rearrangement in vitro, as described by Hoogenboom and Winter in Journal of Molecular Biology 227:381-388 (1992).Patent publications describing human antibody phage libraries include, for example, U.S. Patent Nos. 5,750,373, 7,985,840, 7,785,903, and 8,679,490, as well as U.S. Patent Application Publication Nos. 2005 / 0079574, 2007 / 0117126, 2007 / 0237764, and 2007 / 0292936.
[0128] Further examples of methods known in the art for screening combinatorial libraries for antibodies with desired activity(ies) include ribosome and mRNA display, as well as methods for antibody display and selection in bacteria, mammalian cells, insect cells or yeast cells. Methods for yeast surface display are reviewed, for example, in Scholler et al., Methods in Molecular Biology 503:135-56 (2012) and Cherf et al., Methods in Molecular biology 1319:155-175 (2015), and Zhao et al., Methods in Molecular Biology 889:73-84 (2012). Methods for ribosome display are described, for example, in He et al., Nucleic Acids Research 25:5132-5134 (1997), and Hanes et al., PNAS 94:4937-4942 (1997).
[0129] Antibodies or antibody fragments isolated from a human antibody library are considered herein to be human antibodies or human antibody fragments.
[0130] 5. Multispecific antibodies In certain embodiments, the antibodies provided herein are multispecific antibodies. A "multispecific antibody" is a monoclonal antibody that has binding specificities for at least two different sites, i.e., different epitopes on different antigens or different epitopes on the same antigen. In certain embodiments, a multispecific antibody has three or more binding specificities.
[0131] Multispecific antibodies with three or more binding specificities, including the antibodies provided herein, can be provided in an asymmetric format with domain crossover in one or more binding arms of the same antigen specificity, i.e. by exchanging VH / VL domains (see, e.g., WO 2009 / 080252 and WO 2015 / 150447), CH1 / CL domains (see, e.g., WO 2009 / 080253), or complete Fab arms (see, e.g., WO 2009 / 080251, WO 2016 / 016299, as well as Schaefer et al, PNAS, 108 (2011) 1187-1191 and Klein at al., MAbs 8 (2016) 1010-20). A variety of additional molecular formats of multispecific antibodies are known in the art and are included herein (see, e.g., Spiess et al., Mol Immunol 67 (2015) 95-106).
[0132] 6. Antibody variants In certain embodiments, amino acid sequence variants of the antibodies provided herein are contemplated. For example, it may be desirable to change the binding affinity and / or other biological properties of the antibody. Amino acid sequence variants of the antibody can be prepared by introducing appropriate modifications into the nucleotide sequence encoding the antibody or by peptide synthesis. Such modifications include, for example, deletions from, and / or insertions into, and / or substitutions of residues within the amino acid sequence of the antibody. Any combination of deletions, insertions, and substitutions can be made to arrive at the final construct, provided that the final construct has the desired properties, e.g., antigen binding.
[0133] In certain embodiments, antibody variants with one or more amino acid substitutions are provided. Target sites for substitution mutagenesis include CDRs and FRs. Conservative substitutions are shown in the table below under the heading of "preferred substitutions". More substantial changes are shown in Table B under the heading of "exemplary substitutions" and are further described below according to the class of amino acid side chains. Amino acid substitutions can be introduced into the antibody of interest and the product screened for the desired activity, for example, retained / improved antigen binding, reduced immunogenicity, or improved ADCC or CDC.
[0134] [Table B]
[0135] Amino acids can be grouped according to the following common side chain properties: (1) Hydrophobic: Norleucine, Met, Ala, Val, Leu, Ile; (2) Neutral hydrophilic: Cys, Ser, Thr, Asn, Gln; (3) Acidic: Asp, Glu; (4) Basic: His, Lys, Arg; (5) Residues that affect chain orientation: Gly, Pro; (6) Aromatic: Trp, Tyr, Phe.
[0136] Non-conservative substitutions entail exchanging a member of one of these classes for a member of another class.
[0137] One type of substitutional variant involves substituting one or more hypervariable region residues of a parent antibody (e.g., a humanized or human antibody). Generally, the resulting variant selected for further study will have altered (e.g., improved) certain biological properties (e.g., improved affinity, reduced immunogenicity) compared to the parent antibody and / or will substantially retain certain biological properties of the parent antibody. An exemplary substitutional variant is an affinity matured antibody, which can be conveniently generated, for example, using phage display-based affinity maturation techniques as described herein. Briefly, one or more HVR residues are mutated and the variant antibodies are displayed on phage and screened for a particular biological activity (e.g., binding affinity).
[0138] Alterations (e.g., substitutions) may be made in the CDRs, for example, to improve antibody affinity. Such alterations can be made in "hot spots" within the CDRs, i.e., residues encoded by codons that undergo frequent mutation during the somatic maturation process (see, e.g., Chowdhury, Methods Mol. Biol. 207:179-196 (2008)) and / or in antigen-facing residues, and the binding affinity of the resulting variants VH or VL is tested. Affinity maturation by construction and reselection from secondary libraries is described, for example, in Hoogenboom et al., Methods in Molecular Biology 178:1-37 (O'Brien et al., ed., Human Press, Totowa, NJ, (2001)). In some embodiments of affinity maturation, diversity is introduced into the variable genes selected for maturation by any of a variety of methods (e.g., error-prone PCR, chain shuffling, or oligonucleotide-directed mutagenesis). A secondary library is then generated. The library is then screened to identify any antibody variants with the desired affinity. Another method of introducing diversity involves a CDR-directed approach, in which multiple CDR residues (e.g., 4-6 residues at a time) are randomized. CDR residues involved in antigen binding can be specifically identified, for example, using alanine scanning mutagenesis or modeling. In particular, CDR-H3 and CDR-L3 are often targeted.
[0139] In certain aspects, substitutions, insertions or deletions can be made within one or more CDRs, so long as these changes do not substantially reduce the ability of the antibody to bind to the antigen. For example, conservative changes (e.g., conservative substitutions as provided herein) that do not substantially reduce binding affinity can be made within a CDR. Such changes can be, for example, outside the antigen bordering residues within the CDR. In the particular variant VH and VL sequences provided above, each CDR is unaltered or contains only one, two or three amino acid substitutions.
[0140] A useful method for identifying antibody residues or regions that can be targeted for mutagenesis is called "alanine scanning mutagenesis" as described by Cunningham and Wells (1989) Science, 244:1081-1085. In this method, a target residue or group of residues (e.g., charged residues such as arg, asp, his, lys, and glu) is identified and replaced with neutral or negatively charged amino acids (e.g., alanine or polyalanine) to determine whether the interaction of the antigen with the antibody is affected. Further substitutions can be introduced at amino acid positions that show functional sensitivity to the initial substitution. Alternatively or additionally, a crystal structure of an antigen-antibody complex can be used to identify contact points between the antibody and antigen. Such contact and adjacent residues can be targeted or eliminated as candidates for substitution. The variants can be screened to determine whether they contain the desired properties.
[0141] Amino acid sequence insertions include amino- and / or carboxyl-terminal fusions ranging in length from one residue to polypeptides having 100 or more residues, as well as intrasequence insertions of single or multiple amino acid residues. An example of a terminal insertion includes an antibody with an N-terminal methionyl residue. Other insertional variants of the antibody molecule include the fusion to the N- or C-terminus of the antibody with an enzyme (e.g. for ADEPT (antibody-directed enzyme prodrug therapy)) or a polypeptide which increases the serum half-life of the antibody.
[0142] a) Glycosylation variants In certain embodiments, the antibodies provided herein are altered to increase or decrease the extent to which the antibody is glycosylated. Adding or deleting glycosylation sites to an antibody can be conveniently accomplished by altering the amino acid sequence such that one or more glycosylation sites are created or removed.
[0143] If the antibody comprises an Fc region, the oligosaccharides attached thereto can be altered. Natural antibodies produced by mammalian cells typically comprise a branched, biantennary oligosaccharide, generally attached by an N-linkage to Asn297 in the CH2 domain of the Fc region. See, for example, Wright et al., TIBTECH 15:26-32 (1997). The oligosaccharides can include various carbohydrates, such as mannose, N-acetylglucosamine (GlcNAc), galactose and sialic acid, as well as fucose attached to GlcNAc in the "stem" of the biantennary oligosaccharide structure. In some embodiments, modifications of the oligosaccharides in the antibodies of the invention can be made to generate antibody variants with specific improved properties.
[0144] In one embodiment, antibody variants are provided that have nonfucosylated oligosaccharides, i.e., oligosaccharide structures that lack fucose attached (directly or indirectly) to the Fc region. Such nonfucosylated oligosaccharides (also called "afucosylated" oligosaccharides) are in particular N-linked oligosaccharides that lack a fucose residue attached to the first GlcNAc in the stem of the biantennary oligosaccharide structure. In some embodiments, antibody variants are provided that have an increased proportion of nonfucosylated oligosaccharides in the Fc region compared to the native or parent antibody. For example, the proportion of nonfucosylated oligosaccharides can be at least about 20%, at least about 40%, at least about 60%, at least about 80%, or even about 100% (i.e., there are no fucosylated oligosaccharides). The percentage of nonfucosylated oligosaccharides is the (average) amount of oligosaccharides lacking a fucose residue relative to the sum of all glycostructures (e.g. complex, hybrid and high mannose structures) attached to Asn297 as measured by MALDI-TOF mass spectrometry, e.g. as described in WO 2006 / 082515. Asn297 refers to an asparagine residue located at approximately position 297 (EU numbering of Fc region residues) in the Fc region, although Asn297 may also be located approximately ±3 amino acids upstream or downstream from position 297, i.e. between positions 294 and 300, due to minor sequence variations in antibodies. Such antibodies with an increased percentage of nonfucosylated oligosaccharides in the Fc region may have improved FcγRIIIa receptor binding and / or improved effector function, in particular improved ADCC function. See, e.g., U.S. Patent Application Publication Nos. 2003 / 0157108; 2004 / 0093621.
[0145] Examples of cell lines capable of producing antibodies with reduced fucosylation include Lec13 CHO cells, which are deficient in protein fucosylation (Ripka et al. Arch. Biochem. Biophys. 249:533-545 (1986); U.S. Patent Application Publication No. 2003 / 0157108; and WO 2004 / 056312, especially Example 11), and knockout cell lines, such as alpha-1,6-fucosyltransferase gene, FUT8, knockout CHO cells (e.g., Yamane-Ohnuki et al. Biotech. Bioeng. 87:614-622 (2004); Kanda, Y. et al., Biotechnol. Bioeng., 94(4):680-688 (2005)). (2006); and WO 2003 / 085107), or cells in which activity of GDP-fucose synthesis or transport proteins is reduced or stopped (see, e.g., U.S. Patent Nos. 2004259150, 2005031613, 2004132140, 2004110282).
[0146] In a further embodiment, antibody variants are provided that have bisected oligosaccharides, e.g., biantennary oligosaccharides attached to the Fc region of the antibody are bisected by GlcNAc. Such antibody variants may have reduced fucosylation and / or improved ADCC function, as described above. Examples of such antibody variants are described, for example, in Umana et al., Nat Biotechnol 17, 176-180 (1999); Ferrara et al., Biotechn Bioeng 93, 851-861 (2006); WO 99 / 54342, WO 2004 / 065540, WO 2003 / 011878.
[0147] Also provided are antibody variants with at least one galactose residue in the oligosaccharide attached to the Fc region. Such antibody variants may have improved CDC function. Such antibody variants are described, for example, in WO 1997 / 30087; WO 1998 / 58964; and WO 1999 / 22764.
[0148] b) Fc domain variants In certain embodiments, one or more amino acid modifications can be introduced into the Fc region of an antibody provided herein, thereby generating an Fc region variant. An Fc region variant is a human Fc region sequence (e.g., human IgG) that contains an amino acid modification (e.g., substitution) at one or more amino acid positions. 1 , IgG 2 , IgG 3 or IgG 4 Fc region).
[0149] In certain aspects, the invention contemplates antibody variants that possess some, but not all, effector functions, making them desirable candidates for applications where antibody half-life in vivo is important, yet certain effector functions (e.g., complement-dependent cytotoxicity (CDC) and antibody-dependent cell-mediated cytotoxicity (ADCC)) are unnecessary or detrimental. In vitro and / or in vivo cytotoxicity assays can be performed to confirm reduced / depleted CDC and / or ADCC activity. For example, Fc receptor (FcR) binding assays can be performed to confirm that the antibody lacks FcγR binding (and thus likely lacks ADCC activity) but retains FcRn binding ability. NK cells, the primary cells mediating ADCC, express only FcγRIII, whereas monocytes express FcγRI, FcγRII and FcγRIII. Expression of FcR on hematopoietic cells is summarized in Table 3 on page 464 of Ravetch and Kinet, Annu. Rev. Immunol. 9:457-492 (1991). Non-limiting examples of in vitro assays to assess ADCC activity of a molecule of interest are described in U.S. Patent No. 5,500,362 (see, e.g., Hellstrom, I et al. Proc. Nat'l Acad. Sci. USA 83:7059-7063 (1986)) and Hellstrom, I et al., Proc. Nat'l Acad. Sci. USA 82:1499-1502 (1985); 5,821,337 (see, Bruggemann, M. et al., J. Exp. Med. 166:1351-1361 (1987)). Alternatively, non-radioactive assay methods may be used (e.g., ACTI for flow cytometry). TMNon-radioactive cytotoxicity assays (see CellTechnology, Mountain View, CA; and CytoTox96® Non-radioactive Cytotoxicity Assay (Promega, Madison, WI)). Useful effector cells for such assays include peripheral blood mononuclear cells (PBMC) and natural killer (NK) cells. Alternatively, or additionally, ADCC activity of the molecule of interest may be assessed in vivo, e.g., in an animal model such as that disclosed in Clynesr et al. Proc. Nat'l. Sci. USA 95:652-656 (1998). C1q binding assays can also be performed to confirm that the antibody is unable to bind C1q and therefore lacks CDC activity. See, e.g., C1q and C3c binding ELISAs in WO 2006 / 029879 and WO 2005 / 100402. To assess complement activation, a CDC assay can be performed (see, e.g., Gazzano-Santoro et al., J. Immunol. Methods 202:163 (1996); Cragg, MS et al., Blood 101:1045-1052 (2003); and Cragg, MS and MJ Glennie, Blood 103:2738-2743 (2004)). FcRn binding and in vivo clearance / half-life determinations can also be performed using methods known in the art (see, e.g., Petkova, SB et al., Int'l. Immunol. 18(12):1759-1769 (2006); WO 2013 / 120929).
[0150] Antibodies with reduced effector function include those with substitutions at one or more of Fc region residues 238, 265, 269, 270, 297, 327 and 329 (U.S. Patent No. 6,737,056). Such Fc mutants include Fc mutants with substitutions at two or more of amino acid positions 265, 269, 270, 297 and 327, including the so-called "DANA" Fc mutants with substitutions of residues 265 and 297 to alanine (U.S. Patent No. 7,332,581).
[0151] Certain antibody variants have been described with improved or diminished binding to FcRs (see, e.g., U.S. Pat. No. 6,737,056; WO 2004 / 056312; and Shields et al., J. Biol. Chem. 9(2): 6591-6604 (2001)). In a particular embodiment, the antibody variant comprises an Fc region with one or more amino acid substitutions that improve ADCC, e.g., substitutions at positions 298, 333 and / or 334 (EU numbering of residues) of the Fc region.
[0152] In a particular embodiment, the antibody variant comprises an Fc region comprising one or more amino acid substitutions that reduce FcγR binding, e.g., substitutions at positions 234 and 235 (EU numbering of residues) of the Fc region. In one embodiment, the substitutions are L234A and L235A (LALA). In a particular embodiment, the antibody variant comprises a human IgG 1 In one embodiment, the substitution is from a human IgG 1 In another embodiment, the substitutions are from the Fc region, L234A, L235A, and P329G (LALA-PG) in the Fc region. (See, e.g., WO 2012 / 130831.) In another embodiment, the substitutions are from the Fc region, L234A, L235A, and P329G in the Fc region (LALA-PG). 1 These are L234A, L235A, and D265A (LALA-DA) in the Fc region, which are derived from the Fc region.
[0153] In some embodiments, modifications are made in the Fc region that result in altered (i.e., improved or decreased) C1q binding and / or complement dependent cytotoxicity (CDC), e.g., as described in U.S. Pat. No. 6,194,551, WO 99 / 51642, and Idusogie et al., J. Immunol. 164:4178-4184 (2000).
[0154] Antibodies with increased half-life and improved binding to the neonatal Fc receptor (FcRn), which is responsible for the transport of maternal IgG to the fetus (Guyer et al., J. Immunol. 117:587 (1976) and Kim et al., J. Immunol. 24:249 (1994)), have been described in U.S. Patent Application Publication No. 2005 / 0014934 (Hinton et al.). Such antibodies comprise an Fc region with one or more substitutions that improve binding of the Fc region to FcRn. Such Fc variants include those having substitutions at one or more of Fc region residues 238, 252, 254, 256, 265, 272, 286, 303, 305, 307, 311, 312, 317, 340, 356, 360, 362, 376, 378, 380, 382, 413, 424 or 434 (see, e.g., U.S. Patent No. 7,371,826; Dall'Acqua, WF, et al. J. Biol. Chem. 281 (2006) 23514-23524).
[0155] The Fc region residues important for mouse Fc-mouse FcRn interaction have been identified by site-directed mutagenesis (see, e.g., Dall'Acqua, WF, et al. J. Immunol 169 (2002) 5171-5180). Residues I253, H310, H433, N434 and H435 (EU numbering) are involved in this interaction (Medesan, C., et al., Eur. J. Immunol. 26 (1996) 2533; Firan, M., et al., Int. Immunol. 13 (2001) 993; Kim, JK, et al., Eur. J. Immunol. 24 (1994) 542). Residues I253, H310 and H435 were found to be important for the interaction of human Fc with mouse FcRn (Kim, JK, et al., Eur. J. Immunol. 29 (1999; 2819). Studies of the human Fc-human FcRn complex have shown that residues I253, S254, H435 and Y436 are important for this interaction (Firan, M., et al., Int. Immunol. 13 (2001) 993; Shields, RL, et al., J. Biol. Chem. 276 (2001) Yeung, YA et al., J. Immunol. 182 (2009) 7667-7671, report and investigate various mutants of residues 248-259, 301-317, 376-382, and 424-437.
[0156] In certain embodiments, the antibody variant comprises an Fc region with one or more amino acid substitutions that reduce FcRn binding, e.g., substitutions at positions 253 and / or 310 and / or 435 of the Fc region (EU numbering of residues). In certain embodiments, the antibody variant comprises an Fc region with amino acid substitutions at positions 253, 310, and 435. In one embodiment, the substitutions are I253A, H310A, and H435A in the Fc region derived from a human IgG1 Fc region. See, e.g., Grevys, A. et al. J. Immunol. 194 (2015) 5497-5508.
[0157] In certain embodiments, the antibody variant comprises an Fc region with one or more amino acid substitutions that reduce FcRn binding, e.g., substitutions at positions 310 and / or 433 and / or 436 (EU numbering of residues) of the Fc region. In certain embodiments, the antibody variant comprises an Fc region with amino acid substitutions at positions 310, 433, and 436. In one embodiment, the substitutions are H310A, H433A, and Y436A in the Fc region derived from a human IgG1 Fc region. (See, e.g., WO 2014 / 177460.)
[0158] In certain embodiments, the antibody variant comprises an Fc region with one or more amino acid substitutions that increase FcRn binding, e.g., substitutions at positions 252 and / or 254 and / or 256 (EU numbering of residues) of the Fc region. In certain embodiments, the antibody variant comprises an Fc region with amino acid substitutions at positions 252, 254, and 256. In one embodiment, the substitutions are at positions 252, 254, and 256 of the human IgG 1 Derived from the Fc region are M252Y, S254T, and T256E in the Fc region. For other examples of Fc region variants, see also Duncan & Winter, Nature 322:738-40 (1988), U.S. Patent No. 5,648,260, U.S. Patent No. 5,624,821, and WO 94 / 29351.
[0159] The C-terminus of the heavy chain of the antibody as reported herein may be a complete C-terminus terminating in amino acid residue PGK. The C-terminus of the heavy chain may be a truncated C-terminus in which one or two of the amino acid residues at the C-terminus have been removed. In a preferred embodiment, the C-terminus of the heavy chain is a truncated C-terminus terminating in PG. In one embodiment of all embodiments as reported herein, an antibody comprising a heavy chain comprising a C-terminal CH3 domain as specified herein comprises a C-terminal glycine-lysine dipeptide (G446 and K447, EU index numbering of amino acid positions). In one embodiment of all embodiments as reported herein, an antibody comprising a heavy chain comprising a C-terminal CH3 domain as specified herein comprises a C-terminal glycine residue (G446, EU index numbering of amino acid positions).
[0160] c) Cysteine Engineered Antibody Variants In certain embodiments, cysteine engineered antibodies, e.g., ThioMAbs, in which one or more residues of the antibody are replaced with a cysteine residue. TM In certain embodiments, the substituted residues occur at accessible sites of the antibody. By replacing these residues with cysteine, reactive thiol groups are thereby placed at accessible sites of the antibody, which can be used to conjugate the antibody to other moieties, such as drug moieties or linker-drug moieties, to generate immunoconjugates, as detailed herein. Cysteine engineered antibodies can be generated, for example, as described in U.S. Pat. Nos. 7,521,541, 8,309,30, 7,855,275, 9,000,130, or WO2016040856.
[0161] 7. Immunoconjugates The present invention also provides immunoconjugates comprising an antibody that binds human VEGF and human IL-1 beta as disclosed herein conjugated (chemically bonded) to one or more therapeutic agents, such as a cytotoxic agent, a chemotherapeutic agent, a drug, a growth inhibitory agent, a toxin (e.g., a protein toxin, an enzymatically active toxin of bacterial, fungal, plant or animal origin, or fragments thereof), or a radioactive isotope.
[0162] In one embodiment, the immunoconjugate is an antibody-drug conjugate (ADC) in which the antibody is conjugated to one or more therapeutic agents as described above.The antibody is typically linked to one or more therapeutic agents using a linker.An overview of ADC technology, including examples of therapeutic agents and therapeutic agents, and linkers, is set forth in Pharmacol Review 68:3-19 (2016).
[0163] Recombinant methods and compositions Antibodies can be produced using recombinant methods and compositions, such as those described in U.S. Patent No. 4,816,567. For such methods, one or more isolated nucleic acids encoding the antibody are provided.
[0164] In one aspect, an isolated nucleic acid encoding an antibody of the invention is provided.
[0165] In one aspect, there is provided a method of making an antibody that binds human VEGF and human IL-1 beta, the method comprising culturing a host cell comprising nucleic acid encoding the antibody, as described above, under conditions suitable for expression of the antibody, and optionally recovering the antibody from the host cell (or host cell culture medium).
[0166] For recombinant production of an antibody that binds human VEGF and human IL-1 beta, a nucleic acid encoding the antibody, e.g., as described above, is isolated and inserted into one or more vectors for further cloning and / or expression in a host cell. Such nucleic acid can be readily isolated and sequenced using conventional procedures (e.g., by using oligonucleotide probes capable of specifically binding to genes encoding the heavy and light chains of the antibody), or can be produced by recombinant methods or obtained by chemical synthesis.
[0167] Suitable host cells for cloning or expressing antibody-encoding vectors include prokaryotic or eukaryotic cells as described herein. For example, antibodies can be produced in bacteria, particularly if glycosylation and Fc effector functions are not required. For expression of antibody fragments and polypeptides in bacteria, see, for example, U.S. Pat. Nos. 5,648,237, 5,789,199, and 5,840,523. (See also Charlton, KA, Methods in Molecular Biology, Vol. 248, Lo, BKC (ed.), Humana Press, Totowa, NJ (2003), p. 245-254, which describes the expression of antibody fragments in E. coli.) After expression, the antibody can be isolated from the bacterial cell paste in a soluble fraction and further purified.
[0168] Vertebrate cells can also be used as hosts. For example, mammalian cell lines that are adapted to grow in suspension can be useful. Other examples of useful mammalian host cell lines include monkey kidney CV1 lines transformed with SV40 (COS-7); human embryonic kidney lines (e.g., 293 or 293T cells as described in Graham, FL et al., J. Gen Virol. 36 (1977) 59-74); baby hamster kidney cells (BHK); mouse Sertoli cells (e.g., TM4 cells as described in Mather, JP, Biol. Reprod. 23 (1980) 243-252); monkey kidney cells (CV1); African green monkey kidney cells (VERO-76); human cervical carcinoma cells (HELA); canine kidney cells (MDCK); buffalo rat liver cells (BRL 3A); human lung cells (W138); human hepatocytes (HepG2); mouse mammary tumor (MMT060562); TRI cells (e.g., Mather, JP et al., Annals NY Acad. Sci. 383 (1982) 44-68); MRC5 cells; and FS4 cells. Other useful mammalian host cell lines include Chinese hamster ovary (CHO) cells, including DHFR-CHO cells (Urlaub, G. et al., Proc. Natl. Acad. Sci. USA 77 (1980) 4216-4220); and myeloma cell lines such as Y0, NS0 and Sp2 / 0. For a review of specific mammalian host cell lines suitable for antibody production, see, for example, Yazaki, P. and Wu, A. M., Methods in Molecular Biology, Vol. 248, in Lo, BKC (ed.), Humana Press, Totowa, NJ (2004), pp. 255-268.
[0169] In one embodiment, the host cell is eukaryotic, such as a Chinese Hamster Ovary (CHO) cell or a lymphoid cell (eg, a Y0, NS0, Sp20 cell).
[0170] Pharmaceutical Compositions In further embodiments, pharmaceutical compositions comprising any of the antibodies provided herein are provided, e.g., for use in any of the therapeutic methods described below. In one embodiment, the pharmaceutical composition comprises any of the antibodies provided herein and a pharma- ceutically acceptable carrier. In another embodiment, the pharmaceutical composition comprises any of the antibodies provided herein and at least one additional therapeutic agent, e.g., as described below.
[0171] Pharmaceutical compositions of the antibodies binding to human VEGF and human IL-1 beta described herein are prepared in the form of a lyophilized composition or an aqueous solution by mixing the antibodies having the desired purity with one or more of any pharma- ceutically acceptable carriers (Remington's Pharmaceutical Sciences 16th edition, Osol, A. Ed. (1980)). Typically, pharma- ceutically acceptable carriers are non-toxic to recipients at the dosages and concentrations employed, and include, but are not limited to, buffers such as histidine, phosphate, citrate, acetate, and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (e.g., octadecyldimethylbenzylammonium chloride; hexamethonium chloride; benzalkonium chloride; benzethonium chloride, phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol). low molecular weight (less than about 10 residues) polypeptides; proteins such as serum albumin, gelatin or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arginine or lysine; monosaccharides, disaccharides and other carbohydrates including glucose, mannose or dextrin; chelating agents such as EDTA; sugars such as sucrose, mannitol, trehalose or sorbitol; salt-forming counterions such as sodium; metal complexes (e.g., Zn-protein complexes); and / or non-ionic surfactants such as polyethylene glycol (PEG). Exemplary pharmaceutically acceptable carriers herein further include interstitial drug dispersion agents such as soluble neutral active hyaluronidase glycoproteins (sHASEGPs), e.g., human soluble PH-20 hyaluronidase glycoproteins such as rHuPH20 (HYLENEX®, Halozyme). Certain exemplary sHASEGPs, including rHuPH20, and methods of use are described in U.S. Patent Application Publication Nos. 2005 / 0260186 and 2006 / 0104968.In one embodiment, the sHASEGP is combined with one or more additional glycosaminoglycanases, such as chondroitinases.
[0172] Exemplary lyophilized antibody compositions are described in U.S. Patent No. 6,267,958. Aqueous antibody compositions include those described in U.S. Patent No. 6,171,586 and WO 2006 / 044908, the latter compositions including a histidine-acetate buffer.
[0173] The pharmaceutical compositions described herein may also contain more than one active ingredient as necessary for the particular indication being treated, preferably those with complementary activities that do not adversely affect each other. Such active ingredients are preferably present in combination in amounts that are effective for the purpose intended.
[0174] The active ingredient can be encapsulated in microcapsules, such as hydroxymethylcellulose microcapsules or gelatin-microcapsules and poly-(methyl methacrylate) microcapsules, respectively, prepared by coacervation techniques or interfacial polymerization methods, in colloidal drug delivery systems (such as liposomes, albumin microspheres, microemulsions, nanoparticles, and nanocapsules), or in macroemulsions. These techniques are disclosed in Remington's Pharmaceutical Sciences 16th Edition, Osol, A. Ed. (1980).
[0175] Pharmaceutical compositions may be prepared for sustained release. Suitable examples of sustained release preparations include semipermeable matrices of solid hydrophobic polymers containing the antibody, which matrices are in the form of shaped articles, e.g., films, or microcapsules.
[0176] Pharmaceutical compositions to be used for in vivo administration are generally sterile. Sterility is readily accomplished, for example, by filtration through sterile filtration membranes.
[0177] Treatment Methods and Routes of Administration Any of the antibodies provided herein that bind to human VEGF and human IL-1 beta can be used in the methods of treatment.
[0178] In one embodiment, an antibody that binds human VEGF and human IL-1 beta is provided for use as a medicament. In a further embodiment, an antibody that binds human VEGF and human IL-1 beta is provided for use in the treatment of vascular disease. In a particular embodiment, an antibody that binds human VEGF and human IL-1 beta is provided for use in a method of treatment. In a particular embodiment, the invention provides an antibody that binds human VEGF and human IL-1 beta for use in a method of treating an individual having a vascular disease, comprising administering to the individual an effective amount of an antibody that binds human VEGF and human IL-1 beta. In one such embodiment, the method further comprises administering to the individual an effective amount of at least one additional therapeutic agent (e.g., 1, 2, 3, 4, 5 or 6 additional therapeutic agents), e.g., as described below. In a further embodiment, the invention provides an antibody that binds human VEGF and human IL-1 beta for use in inhibiting angiogenesis. In a particular embodiment, the invention provides an antibody that binds human VEGF and human IL-1 beta for use in a method of inhibiting angiogenesis in an individual comprising administering to the individual an effective amount of an antibody that binds human VEGF and human IL-1 beta to inhibit angiogenesis. An "individual" according to any of the above embodiments is preferably a human.
[0179] In a further aspect, an antibody that binds human VEGF and human IL-1 beta is provided for use in treating an ocular disease. In one embodiment, the ocular disease is AMD (in one embodiment, wet AMD, dry AMD, intermediate AMD, advanced AMD, and geographic atrophy (GA)), macular degeneration, macular edema, DME (in one embodiment, focal DME that does not involve the fovea and diffuse DME that includes the fovea), retinopathy, diabetic retinopathy (DR) (in one embodiment, proliferative DR (PDR), non-proliferative DR (NPDR), and high altitude DR), other ischemia-related retinopathies, ROP, retinal vein occlusion, and the like. Retinal vein occlusion (RVO) (in one embodiment, central retinal vein occlusion (CRVO) and branch retinal vein occlusion (BRVO)), CNV (in one embodiment, myopic CNV), corneal neovascularization, diseases associated with corneal neovascularization, retinal neovascularization, diseases associated with retinal / choroidal neovascularization, central serous retinopathy (CSR), pathological myopia, von Hippel-Lindau disease, ocular histoplasmosis, FEVR, Coats disease, Norrie disease, osteoporosis-pseudoglioma syndrome (OP) retinal abnormalities associated with glaucoma, retinal pigmentosa (PG), subconjunctival hemorrhage, skin flushing, neovascular diseases of the eye, neovascular glaucoma, retinitis pigmentosa (RP), hypertensive retinopathy, retinal angiomatosis proliferation, macular telangiectasia, iris neovascularization, intraocular neovascularization, retinal degeneration, cystoid macular edema (CME), vasculitis, optic disc edema, retinitis including, but not limited to, CMV retinitis, intraocular melanoma, retinoblastoma, conjunctivitis (in one embodiment, infectious conjunctivitis and non-infectious (in one embodiment, In one embodiment, the eye disease is selected from AMD (in one embodiment, wet AMD, dry AMD, intermediate AMD, advanced AMD, and geographic atrophy (GA)), macular degeneration, macular edema, DME (in one embodiment, focal DME not involving the fovea and diffuse DME involving the fovea), retinopathy, diabetic retinopathy (DR) (in one embodiment, proliferative DR (PDR), non-proliferative DR (NPDR), and high altitude DR).
[0180] In a further aspect, the invention provides the use of an antibody that binds human VEGF and human IL-1 beta in the manufacture or preparation of a medicament. In one aspect, the medicament is for the treatment of a vascular disease. In a further aspect, the medicament is for use in a method of treating a vascular disease comprising administering an effective amount thereof to an individual having a vascular disease. In one such aspect, the method of the invention further comprises administering to said individual an effective amount of at least one additional therapeutic agent, e.g. as described below.
[0181] In some embodiments, the medicament is for the treatment of an ocular disease. In further embodiments, the medicament is for use in a method of treating an ocular disease comprising administering an effective amount thereof to an individual having the ocular disease. In one such embodiment, the method of the invention further comprises administering to the individual an effective amount of at least one additional therapeutic agent, e.g., as described below.
[0182] In a further aspect, the invention provides a method for treating a vascular disease. In one aspect, the method comprises administering to an individual having said vascular disease an effective amount of an antibody that binds human VEGF and human IL-1 beta. In one such aspect, the method further comprises administering to said individual an effective amount of at least one additional therapeutic agent, as described below.
[0183] In a further aspect, the invention provides a method for treating an ocular disease. In one aspect, the method comprises administering to an individual having said ocular disease an effective amount of an antibody that binds human VEGF and human IL-1 beta. In one such aspect, the method further comprises administering to said individual an effective amount of at least one additional therapeutic agent, as described below.
[0184] An "individual" according to any of the above aspects may be a human.
[0185] In a further aspect, the invention provides a pharmaceutical composition comprising any of the antibodies provided herein that bind human VEGF and human IL-1 beta, e.g., for use in any of the above-mentioned therapeutic methods. In one aspect, the pharmaceutical composition comprises any of the antibodies provided herein that bind human VEGF and human IL-1 beta, and a pharma- ceutically acceptable carrier. In another aspect, the pharmaceutical composition comprises any of the antibodies provided herein that bind human VEGF and human IL-1 beta, and at least one additional therapeutic agent, e.g., as described below.
[0186] The antibodies of the invention can be administered alone or used in combination therapy, for example, a combination therapy includes administering an antibody of the invention and at least one additional therapeutic agent (e.g., 1, 2, 3, 4, 5, or 6 additional therapeutic agents).
[0187] For example, in certain embodiments, any of the above methods further comprise one or more additional compounds. In certain embodiments, the antibody that binds human VEGF and human IL-1 beta provided herein is administered simultaneously with the additional compound. In certain embodiments, the antibody that binds human VEGF and human IL-1 beta is administered before or after the additional compound(s). In certain embodiments, the additional compound binds to a second biomolecule selected from the group consisting of IL-6; IL-6R; IL-13; IL-13R; PDGF; angiopoietin; Ang2; Tie2; S1P; integrins αvβ3, αvβ5, and α5β1; betacellulin; apelin / APJ; erythropoietin; complement factor D; TNFα; HtrA1; VEGF receptor; ST-2 receptor; and proteins genetically associated with risk of AMD, such as complement pathway components C2, factor B, factor H, CFHR3, C3b, C5, C5a, and C3a; HtrA1; ARMS2; TIMP3; HLA; interleukin-8 (IL-8); CX3CR1; TLR3; TLR4; CETP; LIPC, COL10A1; and TNFRSF10A. In certain embodiments, the additional compound is an antibody or an antigen-binding fragment thereof.
[0188] In certain embodiments according to (or as applied to) any of the above embodiments, the ocular disorder is an intraocular neovascular disease selected from the group consisting of proliferative retinopathies, choroidal neovascularization (CNV), age-related macular degeneration (AMD), diabetic and other ischemia-related retinopathies, diabetic macular edema, pathologic myopia, von Hippel-Lindau disease, ocular histoplasmosis, retinal vein occlusion (RVO), including CRVO and BRVO, corneal neovascularization, retinal neovascularization, and retinopathy of prematurity (ROP).
[0189] In some cases, the antibodies that bind human VEGF and human IL-1 beta provided herein can be administered in combination with at least one additional therapeutic agent for the treatment of an ocular disorder, such as an ocular disorder described herein (e.g., AMD (e.g., wet AMD), DME, DR, RVO, or GA). Exemplary additional therapeutic agents for combination therapy for the treatment of ocular disorders include, but are not limited to, anti-VEGF antibodies (e.g., anti-VEGF Fab Lucentis® (ranibizumab)), soluble receptor fusion proteins (e.g., recombinant soluble receptor fusion protein Eylea® (aflibercept, also known as VEGF Trap Eye; Regeneron / Aventis)), aptamers (e.g., anti-VEGF pegylated aptamer Macugen® (pegaptanib-sodium; NeXstar Pharmaceuticals / OSI Pharmaceuticals), and VEGF antagonists including VEGFR tyrosine kinase inhibitors (e.g., 4-(4-bromo-2-fluoroanilino)-6-methoxy-7-(1-methylpiperidin-4-ylmethoxy)quinazoline (ZD6474), 4-(4-fluoro-2-methylindol-5-yloxy)-6-methoxy-7-(3-pyrrolidin-1-ylpropoxy)quinazoline (AZD2171), vatalanib (PTK787), semaxanib (SU5416; SUGEN), and Sutent® (sunitinib)); These include tryptophanyl-tRNA synthetase (TrpRS); squalamine; RETAANE® (anecortave acetate for depot suspension; Alcon); combretastine A4 prodrug (CA4P); MIFEPREX® (mifepristone-ru486); subtenon triamcinolone acetonide; intravitreal crystalline triamcinolone acetonide; matrix metalloproteinase inhibitors (e.g., Prinomast (AG3340; Pfizer)); fluocinolone acetonide (including fluocinolone intraocular lenses; Bausch & Lomb / Control Delivery Systems); linomide; inhibitors of integrin β3 function; antiangiogenic agents such as angiostatin, and combinations thereof.These and other therapeutic agents that can be administered in combination with the antibodies of the invention that bind human VEGF and human IL-1 beta are described, for example, in U.S. Patent Application Publication No. 2014 / 0017244, which is incorporated by reference in its entirety.
[0190] Further examples of additional therapeutic agents that can be used in combination with the antibodies that bind human VEGF and human IL-1 beta provided herein for the treatment of ocular disorders (e.g., AMD, DME, DR or GA) include, but are not limited to, Visudyne® (verteporfin; a photoactivated drug typically used in combination with photodynamic therapy using a non-thermal laser), PKC412, Endovion (NS 3728; NeuroSearch), neurotrophic factors (e.g., glial derived neurotrophic factor (GDNF) and ciliary neurotrophic factor (CNTF)), diltiazem, dorzolamide, PHOTOTROP®, 9-cis-retinal, eye drops (e.g., phosphodiesterase, echothiophate, or carbonic anhydrase inhibitors), Neovastat (AE-941; AEterna Laboratories), Sirna-027 (AGF-745;Sima Therapeutics), neurotrophins (including, by way of example only, NT-4 / 5, Genentech), Cand5 (Acuity Pharmaceuticals), INS-37217 (Inspire Pharmaceuticals), integrin antagonists (including those from Jerini and Abbott Laboratories), EG-3306 (Ark Therapeutics), BDM-E (BioDiem), thalidomide (used, for example, by EntreMed), cardiotrophin-1 (Genentech), 2-methoxyestradiol (Allergan / Oculex), DL-8234 (Toray), NTC-200 (Neurotech), tetrathiomolybdate (University of Michigan), LYN-002 (Lynkeus Biotech), microalgae compounds (Aquasearch / Albany, Mera Pharmaceuticals), D-9120 (CellTech Group), ATX-S10 (Hamamatsu Photonics), TGF-beta 2 (Genzyme / Celtrix), tyrosine kinase inhibitors (e.g., from Allergan, SUGEN, or Pfizer), NX-278-L (NeXstar Pharmaceuticals / Gilead Sciences), Opt-24 (OPTIS, France), retinal cell ganglion neuroprotectants (Cogent Neurosciences), N-nitropyrazole derivatives (Texas A&M University System), KP-102 (Krenitsky Pharmaceuticals), cyclosporine A, therapeutic agents used in photodynamic therapy (e.g., Visudyne®; receptor-targeted PDT, Bristol-Myers Squibb; porfimer sodium for injection with PDT; verteporfin, QLT; rostaporfin with PDT, Miravent Medical Technologies; talaporfin sodium with PDT, Nippon Petroleum; and motexafin lutetium, Pharmacyclics), antisense oligonucleotides (e.g., Novagali Pharma, Inc. and ISIS-13650, Ionis Pharmaceuticals, Inc., and combinations thereof.
[0191] The antibodies that bind human VEGF and human IL-1 beta provided herein can be administered in combination with a therapy or surgical procedure for the treatment of an ocular disorder (e.g., AMD, DME, DR, RVO, or GA), including, for example, laser photocoagulation (e.g., panretinal photocoagulation (PRP)), drusen lasering, macular hole surgery, macular translocation, implantable ultra-miniature telescopes, PHI-motion angiography (also known as microlaser therapy and feeder vessel therapy), proton therapy, microstimulation therapy, retinal detachment and vitreous surgery, pleural buckle, submacular surgery, transpupillary thermotherapy, photosystem I therapy, use of RNA interference (RNAi), extracorporeal rheopheresis (also known as membrane differential filtration and rheotherapy), microchip implantation, stem cell therapy, gene replacement therapy, ribozyme gene therapy (gene therapy against hypoxia response element, Oxford These include: Biomedica; Lentipak, Genetix; and PDEF gene therapy, GenVec), photoreceptor / retinal cell transplantation (including transplantable retinal epithelial cells (Diacrin); retinal cell transplantation (e.g., Astellas Pharma, USA), ReNeuron (CHA Biotech)), acupuncture, and combinations thereof.
[0192] In some cases, the antibody that binds human VEGF and human IL-1 beta may be administered in combination with an anti-angiogenic agent for the treatment of ocular disorders (e.g., AMD, DME, DR, RVO, or GA). Any suitable anti-angiogenic agent, including but not limited to those listed by Carmeliet et al. Nature 407:249-257, 2000, may be used in combination with the antibody of the present invention that binds human VEGF and human IL-1 beta. In some embodiments, the anti-angiogenic agent is a VEGF antagonist, including, but not limited to, an anti-VEGF antibody (e.g., anti-VEGF Fab Lucentis® (ranibizumab), RTH-258 (formerly ESBA-1008, an anti-VEGF single chain antibody fragment; Novartis) or a bispecific anti-VEGF antibody (e.g., an anti-VEGF / anti-Angiopoietin 2 bispecific antibody such as faricimab; Roche), a soluble recombinant receptor fusion protein (e.g., Eylea® (aflibercept)), a VEGF variant, a soluble VEGFR fragment, an aptamer capable of blocking VEGF (e.g., pegaptanib) or an aptamer capable of blocking VEGFR, a neutralizing anti-VEGFR antibody, a small molecule inhibitor of VEGFR tyrosine kinase, an anti-VEGF DARPin® (e.g., abicipar pegol; Molecular Partners / Allergan), small interfering RNA that inhibits VEGF or VEGFR expression, VEGFR tyrosine kinase inhibitors (e.g., 4-(4-bromo-2-fluoroanilino)-6-methoxy-7-(1-methylpiperidin-4-ylmethoxy)quinazoline (ZD6474), 4-(4-fluoro-2-methylindol-5-yloxy)-6-methoxy-7-(3-pyrrolidin-1-ylpropoxy)quinazoline (AZD2171), vatalanib (PTK787), semaxanib (SU5416; SUGEN), and Sutent® (sunitinib)), and combinations thereof.
[0193] Other suitable anti-angiogenic agents that can be administered in combination with the antibodies that bind human VEGF and human IL-1 beta provided herein for the treatment of ocular disorders (e.g., AMD, DME, DR, RVO, or GA) include corticosteroids, anti-angiogenic steroids, anecortave acetate, angiostatin, endostatin, tyrosine kinase inhibitors, matrix metalloproteinase (MMP) inhibitors, insulin-like growth factor binding protein 3 (IGFBP3), stromal-derived IL-1β inhibitors, and IL-1β inhibitors. These include, but are not limited to, agents that inhibit the homing of stem cells (e.g., endothelial progenitor cells) to sites of angiogenesis (e.g., anti-vascular endothelial cadherin (CD-144) antibodies and / or anti-SDF-1 antibodies), and combinations thereof.
[0194] In a further example, antibodies and / or polymeric formulations thereof that bind human VEGF and human IL-1 beta can optionally be administered in combination with an agent active against angiogenesis for the treatment of an ocular disorder (e.g., AMD, DME, DR, RVO or GA), such as, for example, anti-inflammatory agents, mammalian target of rapamycin (mTOR) inhibitors (e.g., rapamycin, Afinitor® (everolimus) and Torisel® (temsirolimus)), cyclosporine, tumor necrosis factor (TNF) antagonists (e.g., anti-TNFα antibodies or antigen-binding fragments thereof (e.g., infliximab, adalimumab, certolizumab pegol, and golimumab) or soluble receptor fusion proteins (e.g., etanercept)), anti-complement agents, nonsteroidal anti-inflammatory agents (NSAIDs), or combinations thereof.
[0195] In yet a further example, antibodies that bind human VEGF and human IL-1 beta can optionally be administered in combination with agents that are neuroprotective and may reduce the progression of dry AMD to wet AMD, such as a class of drugs called "neurosteroids," including dehydroepiandrosterone (DHEA) (trade name: PRASTERA TM and FIDELIN®), dehydroepiandrosterone sulfate, and pregnenolone sulfate.
[0196] Suitable AMD therapeutics that can be administered in combination with antibodies that bind human VEGF and human IL-1 beta provided herein for the treatment of ocular disorders (e.g., AMD, DME, DR, RVO, or GA) include, but are not limited to, VEGF antagonists, such as anti-VEGF antibodies (e.g., Lucentis® (ranibizumab), RTH-258 (formerly ESBA-1008, an anti-VEGF single chain antibody fragment; Novartis) or bispecific anti-VEGF antibodies (e.g., anti-VEGF / anti-Angiopoietin 2 bispecific antibodies, such as faricimab; Roche)), soluble VEGF receptor fusion proteins (e.g., Eylea® (aflibercept)), anti-VEGF DARPins® (e.g., abicipar pegol); Molecular Partnerss / Allergan) or anti-VEGF aptamers (e.g. Macugen® (pegaptanib-sodium)); platelet-derived growth factor (PDGF) antagonists, such as anti-PDGF antibodies, anti-PDGFR antibodies (e.g. REGN2176-3), anti-PDGF-BB pegylated aptamers (e.g. Fovista®; Ofsotec / Novartis), soluble PDGFR receptor fusion proteins or dual PDGF / VEGF antagonists (e.g. small molecule inhibitors (e.g. DE-120 (Santen) or X-82 (TyrogeneX)) or bispecific anti-PDGF / anti-VEGF antibodies); Visudyne® ) (verteporfin) in combination with photodynamic therapy; antioxidants; complement system antagonists, such as complement factor C5 antagonists (e.g., small molecule inhibitors (e.g., ARC-1905; Opthotech) or anti-C5 antibodies (e.g., LFG-316; Novartis), propazine antagonists (e.g., anti-propazine antibodies, e.g., CLG-561; Alcon) or complement factor D antagonists (e.g., anti-complement factor D antibodies, e.g., lampalizumab; Roche)); C3 blocking peptides (e.g., APL-2, Appellis); visual cycle regulators (e.g., emixustat hydrochloride); squalamine (e.g., OHR-102; Ohr Pharmaceutical); vitamin and mineral supplements (e.g., those described in Age-Related Eye Disease Study 1 (AREDS1); zinc and / or antioxidants), and those described in Age-Related Eye Disease Study 2 (AREDS2);zinc, antioxidants, lutein, zeaxanthin, and / or omega-3 fatty acids); cell therapy, e.g. NT-501 (Renexus); PH-05206388 (Pfizer), huCNS-SC cell transplantation (StemCells), CNTO-2476 (Janssen), OpRegen (Cell Cure Neurosciences) or MA09-hRPE cell transplantation (Ocata Therapeutics); tissue factor antagonists (e.g. hI-con1; Iconic Therapeutics); alpha-adrenergic receptor agonists (e.g. brimonidine tartrate; Allergan); peptide vaccines (e.g. S-646240; Shionogi); amyloid beta antagonists (e.g. anti-beta amyloid monoclonal antibodies, e.g. GSK-933776); S1P antagonists (e.g. anti-S1P antibodies, e.g. iSONEP; TM ; Lpath); ROBO4 antagonists (e.g., anti-ROBO4 antibodies, e.g., DS-7080a; Daiichi Sankyo); lentiviral vector expressing endostatin and angiostatin (e.g., RetinoStat); and any combination thereof. In some cases, the AMD therapeutic (including any of the aforementioned AMD therapeutics) can be co-formulated. For example, the anti-PDGFR antibody REGN2176-3 can be co-formulated with aflibercept (Eylea®). In some cases, such co-formulations can be administered in combination with the antibodies that bind human VEGF and human IL-1 beta of the present invention. In some cases, the eye disorder is AMD (e.g., wet AMD).
[0197] An antibody that binds human VEGF and human IL-1 beta may be administered in combination with Lucentis® (ranibizumab) for the treatment of an ocular disorder (e.g., AMD, DME, DR, RVO, or GA). In some cases, the ocular disorder is AMD (e.g., wet AMD). In some cases, the ocular disorder is GA.
[0198] The antibodies that bind human VEGF and human IL-1 beta of the present invention may be administered in combination with Lucentis® (aflibercept) for the treatment of ocular disorders (e.g., AMD, DME, DR, RVO, or GA). In some cases, the ocular disorder is AMD (e.g., wet AMD). In some cases, the ocular disorder is GA.
[0199] The antibody that binds human VEGF and human IL-1 beta of the present invention may be administered in combination with Macugen® (pegaptanib sodium) for the treatment of an ocular disorder (e.g., AMD, DME, DR, RVO, or GA). In some cases, the ocular disorder is AMD (e.g., wet AMD). In some cases, the ocular disorder is GA.
[0200] The antibodies of the present invention that bind human VEGF and human IL-1 beta may be administered in combination with Visudyne® (verteporfin) and photodynamic therapy for the treatment of an ocular disorder (e.g., AMD, DME, DR, RVO, or GA). In some cases, the ocular disorder is AMD (e.g., wet AMD). In some cases, the ocular disorder is GA.
[0201] The antibodies that bind human VEGF and human IL-1 beta of the present invention may be administered in combination with a PDGF antagonist for the treatment of ocular disorders (e.g., AMD, DME, DR, RVO or GA). Exemplary PDGF antagonists that may be used in combination with the antibodies that bind human VEGF and human IL-1 beta of the present invention include anti-PDGF antibodies, anti-PDGFR antibodies, small molecule inhibitors (e.g., squalamine), anti-PDGF-B pegylated aptamers (e.g., Fovista® (E10030; Ofsotec / Novartis)) or dual PDGF / VEGF antagonists (e.g., small molecule inhibitors (e.g., DE-120 (Santen) or X-82 (TyrogeneX)) or bispecific anti-PDGF / anti-VEGF antibodies. For example, Fovista® is an It may be administered as an adjunct therapy to the antibodies that bind human VEGF and human IL-1 beta of the invention. OHR-102 may be administered in combination with a VEGF antagonist, such as Lucentis® or Eylea®. In some embodiments, the antibodies that bind human VEGF and human IL-1 beta of the invention may be administered in combination with OHR-102, Lucentis®, and / or Eylea®. In some embodiments, the eye disorder is AMD (e.g., wet AMD). In some cases, the eye disorder is GA.
[0202] The antibodies of the present invention that bind human VEGF and human IL-1 beta may be administered in combination with RTH-258 for the treatment of ocular disorders (e.g., AMD, DME, DR, RVO, or GA). RTH-258 may be administered, for example, by intravitreal injection or eye drops. In some cases, the ocular disorder is AMD (e.g., wet AMD). In some cases, the ocular disorder is GA.
[0203] The antibodies of the present invention that bind human VEGF and human IL-1 beta may be administered in combination with abicipar pegol for the treatment of ocular disorders (e.g., AMD, DME, DR, RVO, or GA). In some cases, the ocular disorder is AMD (e.g., wet AMD). In some cases, the ocular disorder is GA.
[0204] For the treatment of ocular disorders (e.g., AMD, DME, DR, RVO or GA), any suitable DME and / or DR therapeutic can be administered in combination with an antibody that binds human VEGF and human IL-1 beta of the present invention, including, but not limited to, a VEGF antagonist (e.g., Lucentis® or Eylea®), a corticosteroid (e.g., a corticosteroid implant (e.g., Ozurdex® (dexamethasone intravitreal implant) or ILUVIEN® (fluocinolone acetonide intravitreal implant)), or a corticosteroid formulated for administration by intravitreal injection (e.g., triamcinolone acetonide), or a combination thereof. In some cases, the ocular disorder is DME and / or DR.
[0205] Human VEGF and human IL-1 beta binding antibodies of the present invention may be administered in combination with Lucentis® (ranibizumab) for the treatment of DME and / or DR (e.g., NPDR or PDR).
[0206] Antibodies of the present invention that bind human VEGF and human IL-1 beta may be administered in combination with EYLEA® (aflibercept) for the treatment of DME and / or DR (e.g., NPDR or PDR).
[0207] Antibodies that bind human VEGF and human IL-1 beta of the present invention may be administered in combination with Ozurdex® (dexamethasone intravitreal implant) for the treatment of DME and / or DR.
[0208] Antibodies that bind human VEGF and human IL-1 beta of the present invention may be administered in combination with ILUVIEN® (dexamethasone intravitreal implant) for the treatment of DME and / or DR.
[0209] In some cases, AMD treatment drugs (e.g., ranibizumab or aflibercept) may be administered in combination with the antibody that binds to human VEGF and human IL-1 beta of the present invention and / or its polymer formulations using TAO / PRN or TAE treatment regimens. In some cases, the eye disorder is AMD (e.g., wet AMD). In some cases, the eye disorder is GA.
[0210] Such combination therapy as described above encompasses combined administration (two or more therapeutic agents in the same or separate formulations) and separate administration where administration of the antibody that binds human VEGF and human IL-1 beta of the present invention occurs before, simultaneously with, and / or after administration of the additional therapeutic agent(s). In one embodiment, administration of the antibody that binds human VEGF and human IL-1 beta of the present invention and administration of the additional therapeutic agent occur within about 1, 2, 3, 4, or 5 months, or within about 1, 2, or 3 weeks, or within about 1, 2, 3, 4, 5, or 6 days of each other.
[0211] The antibodies (and any additional therapeutic agents) of the invention can be administered by any suitable means, including parenterally, intrapulmonary, and intranasally, and may also be administered intralesionally if localized treatment is desired. Parenteral infusion includes intramuscular, intravenous, intraarterial, intraperitoneal, or subcutaneous administration. Dosing can be by any suitable route, for example, by injection, such as intravenous or subcutaneous injection, depending in part on whether the administration is brief or chronic. Various dosing schedules are contemplated herein, including, but not limited to, a single dose or multiple doses over various time periods, bolus doses, and pulse infusions.
[0212] The antibodies of the invention are formulated, dispensed, and administered in a manner consistent with good medical practice. Factors to be considered in this regard include the particular disorder being treated, the particular mammal being treated, the clinical condition of the individual patient, the cause of the disorder, the site of drug delivery, the method of administration, the schedule of administration, and other factors known to the medical practitioner. The antibodies of the invention are optionally, but not necessarily, formulated with one or more agents currently used to prevent or treat the disorder in question. The effective amount of such other agents will depend on the amount of antibody present in the pharmaceutical composition, the type of disorder or treatment, and other factors discussed above. Such other agents will generally be used in the same dosages and routes of administration as described herein, or at about 1% to 99% of the dosages described herein, or at any dosage and route determined to be empirically / clinically appropriate.
[0213] For the prevention or treatment of a disease, the appropriate dosage of the antibody of the invention (used alone or in combination with one or more other additional therapeutic agents) will be determined by the type of disease being treated, the type of antibody, the severity and course of the disease, whether the antibody is administered for prophylactic or therapeutic purposes, previous treatments, the patient's medical history and response to the antibody, and the discretion of the attending physician. The antibody of the invention is suitably administered to the patient in one or a series of treatments. Depending on the type and severity of the disease, about 1 μg / kg to 15 mg / kg (e.g., 0.1 mg / kg to 10 mg / kg) of the antibody can be an initial candidate dose for administration to a patient, whether by single or multiple separate administrations or by continuous infusion. One typical daily dosage ranges from about 1 μg / kg to 100 mg / kg or more, depending on the factors mentioned above. For repeated administration over several days or more, depending on the condition, treatment will generally be continued until a desired suppression of disease symptoms occurs. One exemplary dosage of the antibody would be in the range of about 0.05 mg / kg to about 10 mg / kg. Thus, one or more doses of about 0.5 mg / kg, 2.0 mg / kg, 4.0 mg / kg or 10 mg / kg (or any combination thereof) can be administered to the patient. Such doses may be administered intermittently, for example every week or every three weeks (e.g., such that the patient receives from about 2 to about 20 or, for example, about 6 doses of the antibody). An initial high loading dose may be followed by one or more lower doses. The progress of this therapy is easily monitored by conventional techniques and assays.
[0214] manufactured goods In another aspect of the invention, an article of manufacture is provided that contains a substance useful for the treatment, prevention, and / or diagnosis of the disorders described above. The article of manufacture comprises a container and a label or package insert affixed to or associated with the container. Suitable containers include, by way of example, bottles, vials, syringes, IV infusion bags, and the like. The container may be formed from a variety of materials, such as glass or plastic. The container holds a composition effective for the treatment, prevention, and / or diagnosis of a medical condition, alone or in combination with another composition, and may have a sterile access port (e.g., the container may be an intravenous solution bag or vial with a stopper pierceable by a hypodermic needle). At least one active agent in the composition is an antibody of the invention. The label or package insert indicates that the composition is used for treating a selected condition. Additionally, the article of manufacture may include (a) a first container having therein a composition comprising an antibody of the invention, and (b) a second container having therein a composition comprising an additional cytotoxic or other therapeutic agent. The article of manufacture in this embodiment of the invention may further comprise a package insert indicating that the composition can be used to treat a particular condition. Alternatively, or additionally, the article of manufacture may further comprise a second (or third) container containing a pharma- ceutically acceptable buffer (e.g., bacteriostatic water for injection (BWFI), phosphate-buffered saline, Ringer's solution, and dextrose solution). The article of manufacture may further comprise other materials desirable from a commercial and user standpoint, including other buffers, diluents, filters, needles, and syringes.
[0215] 3. Specific Embodiments of the Invention Specific embodiments of the present invention are listed below. 1. An antibody that binds to human VEGF and human IL-1 beta, comprising a VEGF paratope and an IL-1 beta paratope within one cognate pair of a variable light domain (VL domain) and a variable heavy domain (VH domain), wherein the VEGF paratope comprises amino acid residues from CDR-H2, CDR-L1 and CDR-L3 of the antibody, and the IL-1 beta paratope comprises amino acid residues from CDR-H1, CDR-H3 and CDR-L2 of the antibody. 2. An antibody that binds to human VEGF and human IL-1 beta, comprising a VEGF paratope and an IL-1 beta paratope within a single cognate pair of a variable light domain (VL domain) and a variable heavy domain (VH domain), wherein this pair of variable light domain and variable heavy domain simultaneously binds to human VEGF and human IL-1 beta. 3. An antibody that binds to human VEGF and human IL-1 beta, comprising a VEGF paratope and an IL-1 beta paratope within a single cognate pair of variable light domain (VL domain) and variable heavy domain (VH domain), wherein none of the amino acids contained in the VEGF paratope are contained in the IL-1 beta paratope. 4. An antibody that binds to human VEGF and human IL-1 beta, comprising a VEGF paratope and an IL-1 beta paratope within a single cognate pair of a variable light domain (VL domain) and a variable heavy domain (VH domain), wherein the antibody binds to the same epitope on human VEGF and epitope on human IL-1 beta as an antibody having a variable heavy domain of SEQ ID NO:11 and a variable light domain of SEQ ID NO:12. 5. An antibody that binds to human VEGF and human IL-1 beta, comprising a VEGF paratope and an IL-1 beta paratope within one cognate pair of a variable light domain (VL domain) and a variable heavy domain (VH domain), the VEGF paratope comprises amino acid residues from CDR-H2, CDR-L1 and CDR-L3 of said antibody and the IL-1 beta paratope comprises amino acid residues from CDR-H1, CDR-H3 and CDR-L2 of said antibody; and / or the pair of variable light and heavy domains simultaneously binds human VEGF and human IL-1 beta; and / or no amino acids contained in the VEGF paratope are contained in the IL-1 beta paratope; and / or the antibody binds to the same epitope on human VEGF and epitope on human IL-1 beta as an antibody having a variable heavy domain of SEQ ID NO: 11 and a variable light domain of SEQ ID NO: 12; and / or The antibody Fab fragment of the antibody has (i) a K of less than 10 pM as measured by surface plasmon resonance. D and (ii) binds to human VEGF12 with a K of less than 30 pM as measured by surface plasmon resonance. D binds to human IL-1 beta; and / or the antibody Fab fragment of said antibody exhibits an aggregation onset temperature of 70°C or higher; and / or the antibody Fab fragment of said antibody exhibits a melting temperature of greater than 80° C. as measured by dynamic light scattering; and / or the binding of an antibody Fab fragment of said antibody to human VEGF inhibits the binding of VEGF to VEGFR2 with an IC50 of less than 50 nM as measured by surface plasmon resonance, and the binding of an antibody Fab fragment of said antibody to human IL-1 beta inhibits the binding of IL-1 beta to IL-1 beta R1 with an IC50 of less than 30 nM as measured by surface plasmon resonance; antibody. 6. Any one of the antibodies of embodiments 1 to 5, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8. 7. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8. 8. The antibody of any one of embodiments 1 to 7, comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30, (ii) FR3 comprising amino acid residues R66, R83, and K94; (e) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16; (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17; (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8; and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system. 9. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30; (ii) FR3 comprising amino acid residues R66, R83, and K94; and (e) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 16. 6, (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system. 10. The antibody of any one of embodiments 1 to 9, comprising a VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98 and D101, and a VL domain comprising amino acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94 and Y96, wherein numbering of the VH and VL domains is according to the Kabat numbering system. 11. - amino acid residues D55, H56, Y58, T61, K62, F63, I64, R66 and R83 in the VH domain, and amino acid residues I2, Y27, W27a, S27c, S27d, E67, D68, Q69, R92, Y93, H94 and Y96 in the VL domain and a VEGF paratope comprising - an IL-1 beta paratope comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, K94, D95, V96, F98 and D101 in the VH domain and amino acid residues L32, Y49, D50, Y53, K54, L56, G57, Y91 in the VL domain; The antibody of embodiment 10, comprising: 12. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a pair of VL domains and a VH domain comprising: (i) a VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98 and D101; and (ii) a VL domain comprising amino acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94 and Y96, wherein the numbering of the VH and VL domains is according to the Kabat numbering system. 13. - a VEGF paratope comprising amino acid residues D55, H56, Y58, T61, K62, F63, I64, R66, and R83 in the VH domain, and amino acid residues I2, Y27, W27a, S27c, S27d, E67, D68, Q69, R92, Y93, H94, and Y96 in the VL domain; - an IL-1 beta paratope comprising the following amino acid residues in the VH domain: E2, G26, V28, K30, W31, N35b, D35c, K52a, K94, D95, V96, F98 and D101; and in the VL domain: L32, Y49, D50, Y53, K54, L56, G57, Y91. The antibody of embodiment 12, comprising: 14. Any one of the antibodies of embodiments 1 to 13, comprising: (a) a VH domain having an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 11; and (b) a VL domain having an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 12. 15. (a) a VH domain comprising an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 11, the VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98 and D101; and (b) a VH domain comprising at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12. 15. The antibody of any one of embodiments 1 to 14, comprising a VL domain comprising an amino acid sequence having 90% sequence identity to said VH and VL domains, said VL domain comprising amino acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94 and Y96, wherein numbering of the VH and VL domains is according to the Kabat numbering system. 16. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein the antibody comprises (a) a VH domain comprising an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 11, and (b) a VL domain comprising an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 12. 17. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, 11, wherein the VH domain comprises amino acid residues E2, G26, V28, K30, R66, R83, and K94; and (b) a VL domain comprising an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12, wherein the VL domain comprises amino acid residues I2, Y49, G57, E67, D68, and Q69; wherein the numbering of the VH and VL domains is according to the Kabat numbering system. 18. A CDR-H1 having an amino acid sequence of SEQ ID NO: 13, (b) an amino acid sequence of SEQ ID NO: 14, (c) an amino acid sequence of SEQ ID NO: 15, (d) a VH domain having a human heavy chain framework with (i) FR1 having amino acid residues E2, G26, V28, and K30, (ii) FR3 having amino acid residues R66, R83, and K94, (e) a CDR-L1 having an amino acid sequence of SEQ ID NO: 16, (f) a CDR-L2 having an amino acid sequence of SEQ ID NO: 17, (g) a CDR-L3 having an amino acid sequence of SEQ ID NO: 8, and (h) a CDR-L4 having an amino acid sequence of SEQ ID NO: 9, and (i) a CDR-L5 having an amino acid sequence of SEQ ID NO: 10. and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system; (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO:11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO:12. 19. Any one of the antibodies of embodiments 1 to 18, comprising: (a) a VH domain having the amino acid sequence of SEQ ID NO: 11 with up to 15 amino acid substitutions; and (b) a variable light domain having the amino acid sequence of SEQ ID NO: 12 with up to 15 amino acid substitutions. 20. The antibody of any one of embodiments 1 to 19, comprising: (a) a VH domain comprising the amino acid sequence of SEQ ID NO: 11 with up to 15 amino acid substitutions, wherein the amino acid substitutions are located at positions 3 to 25, 36 to 49, 97 to 82c, 84 to 93 or 103 to 113 of SEQ ID NO: 11; and (b) a variable light chain domain comprising the amino acid sequence of SEQ ID NO: 12 with up to 15 amino acid substitutions, wherein the amino acid substitutions are located at positions 1, 4, 6, 8 to 23, 35 to 48, 58 to 66, 70 to 88 or 98 to 107 of SEQ ID NO: 12, wherein the numbering of the VH and VL domains is according to the Kabat numbering system. 21. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises the amino acid sequence of SEQ ID NO: 11 with up to 15 amino acid substitutions, and (b) the variable light domain comprises the amino acid sequence of SEQ ID NO: 12 with up to 15 amino acid substitutions. 22. A CDR-H1 having an amino acid sequence of SEQ ID NO: 13, (b) an amino acid sequence of SEQ ID NO: 14, (c) an amino acid sequence of SEQ ID NO: 15, (d) a VH domain comprising a human heavy chain framework having (i) FR1 having amino acid residues E2, G26, V28, and K30, (ii) FR3 having amino acid residues R66, R83, and K94, (e) a CDR-L1 having an amino acid sequence of SEQ ID NO: 16, (f) a CDR-L2 having an amino acid sequence of SEQ ID NO: 17, (g) a CDR-L3 having an amino acid sequence of SEQ ID NO: 18, (h) a CDR-L4 having an amino acid sequence of SEQ ID NO: 19, (i) a CDR-L5 having an amino acid sequence of SEQ ID NO: 20, (ii) a CDR-L6 having an amino acid sequence of SEQ ID NO: 21, (i) a CDR-L7 having an amino acid sequence of SEQ ID NO: 22, (i) a CDR-L8 having an amino acid sequence of SEQ ID NO: 23, (ii) a CDR-L9 having an amino acid sequence of SEQ ID NO: 24, (ii) a CDR-L1 having an amino acid sequence of SEQ ID NO: 25, (iii) a CDR-L1 having an amino acid sequence of SEQ ID NO: 26, (iv) a CDR-L2 having an amino acid sequence of SEQ ID NO: 27, (v) a CDR-L3 having an amino acid sequence of SEQ ID NO: 28, (v) a CDR-L4 having an amino acid sequence of SEQ ID NO: 29, (vi) a CDR-L5 having an amino acid sequence of SEQ ID NO: 30, (v) a CDR-L6 having an amino acid sequence of SEQ ID NO: 31, (vi) 8; and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system; (a) the VH domain comprises the amino acid sequence of SEQ ID NO: 11 with up to 15 amino acid substitutions, and (b) the variable light domain comprises the amino acid sequence of SEQ ID NO: 12 with up to 15 amino acid substitutions. 23. The antibody of any one of embodiments 1 to 22, comprising the VH sequence of SEQ ID NO: 11 and the VL sequence of SEQ ID NO: 12. 24. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising the VH sequence of SEQ ID NO: 11 and the VL sequence of SEQ ID NO: 12. 25. The antibody of any one of embodiments 1 to 24, comprising a heavy chain amino acid sequence of SEQ ID NO: 20 and a light chain amino acid sequence of SEQ ID NO: 19. 26. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising the heavy chain amino acid sequence of SEQ ID NO: 20 and the light chain amino acid sequence of SEQ ID NO: 19. 27. The antibody of any one of embodiments 1 to 26, comprising a heavy chain amino acid sequence of SEQ ID NO: 18 and a light chain amino acid sequence of SEQ ID NO: 19. 28. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising the heavy chain amino acid sequence of SEQ ID NO: 18 and the light chain amino acid sequence of SEQ ID NO: 19. 29. The antibody of any one of embodiments 1 to 28, wherein the antibody Fab fragment of the antibody has (i) a K of less than 10 pM as measured by surface plasmon resonance. D and (ii) binds to human VEGF121 with a K of less than 30 pM as measured by surface plasmon resonance. D An antibody that binds to human IL-1 beta. 30. An antibody that specifically binds to human VEGF and human IL-1 beta, wherein the antibody Fab fragment of the antibody has (i) a K of less than 10 pM as measured by surface plasmon resonance. D and (ii) binds to human VEGF121 with a K of less than 30 pM as measured by surface plasmon resonance. D An antibody that binds to human IL-1 beta. 31. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein an antibody Fab fragment of the antibody has (i) a K of less than 10 pM as measured by surface plasmon resonance. D and (ii) binds to human VEGF121 with a K of less than 30 pM as measured by surface plasmon resonance. D An antibody that binds to human IL-1 beta. 32. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) an FR1 comprising amino acid residues E2, G26, V28, and K30; (ii) an FR3 comprising amino acid residues R66, R83, and K94; and (e) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16. (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, and (h) a VL domain comprising a human light chain framework having (i) an FR1 comprising amino acid residue I2, (ii) an FR2 comprising amino acid residue Y49, and (iii) an FR3 comprising amino acid residues G57, E67, D68, and Q69; wherein the VH and VL domains are numbered according to the Kabat numbering system; and an antibody Fab fragment of the antibody has (i) a K D and (ii) binds to human VEGF121 with a K of less than 30 pM as measured by surface plasmon resonance. D An antibody that binds to human IL-1 beta. 33. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a pair of VL and VH domains, (i) a VH domain including amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98, and D101, and (ii) an amino acid residue α101. and a VL domain comprising amino acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94, and Y96, wherein the VH and VL domains are numbered according to the Kabat numbering system, and an antibody Fab fragment of the antibody has (i) a K D and (ii) binds to human VEGF121 with a K of less than 30 pM as measured by surface plasmon resonance. D An antibody that binds to human IL-1 beta. 34. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12; an antibody Fab fragment of the antibody has (i) a K of less than 10 pM as measured by surface plasmon resonance. D and (ii) binds to human VEGF121 with a K of less than 30 pM as measured by surface plasmon resonance. D An antibody that binds to human IL-1 beta. 35. The antibody of any one of embodiments 1 to 34, wherein the antibody Fab fragment of the antibody exhibits an onset of aggregation temperature above 70°C. 36. An antibody that specifically binds to human VEGF and human IL-1 beta, wherein the antibody Fab fragment of the antibody exhibits an aggregation onset temperature of greater than 70°C. 37. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein the antibody Fab fragment of the antibody exhibits an onset aggregation temperature of greater than 70°C. 38. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30, (ii) FR3 comprising amino acid residues R66, R83, and K94; and (e) a CDR comprising the amino acid sequence of SEQ ID NO: 16. (f) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 17, (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system, and an antibody Fab fragment of the antibody exhibits an aggregation onset temperature greater than 70°C. 39. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a pair of VL and VH domains, comprising: (i) a VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98, and D101; i) a VL domain comprising amino acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94 and Y96, wherein the numbering of the VH and VL domains is according to the Kabat numbering system, and wherein an antibody Fab fragment of the antibody exhibits an aggregation onset temperature greater than 70°C. 40. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 12; and an antibody Fab fragment of the antibody exhibits an onset aggregation temperature of greater than 70°C. 41. The antibody of any one of embodiments 1 to 40, wherein the antibody Fab fragment of the antibody exhibits a melting temperature of greater than 80° C. as measured by dynamic light scattering. 42. An antibody that specifically binds to human VEGF and human IL-1 beta, wherein the antibody Fab fragment of the antibody exhibits a melting temperature of greater than 80°C as measured by dynamic light scattering. 43. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein an antibody Fab fragment of the antibody exhibits a melting temperature of greater than 80°C as measured by dynamic light scattering. 44. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30, (ii) FR3 comprising amino acid residues R66, R83, and K94; and (e) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16; (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17; (g) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8; and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system, and wherein an antibody Fab fragment of the antibody exhibits a melting temperature of greater than 80°C as measured by dynamic light scattering. 45. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a pair of VL and VH domains, comprising: (i) a VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98, and D101; and (ii) an amino acid residue α-amino acid residue β ... and a VL domain comprising acid residues I2, Y27, W27a, S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94 and Y96, wherein the VH and VL domains are numbered according to the Kabat numbering system, and wherein an antibody Fab fragment of the antibody exhibits a melting temperature of greater than 80° C. as measured by dynamic light scattering. 46. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12; and an antibody Fab fragment of the antibody exhibits a melting temperature of greater than 80°C as measured by dynamic light scattering. 47. The antibody of any one of embodiments 1 to 46, wherein the binding of an antibody Fab fragment of the antibody to human VEGF inhibits the binding of VEGF to VEGFR2 with an IC50 of less than 50 nM as measured by surface plasmon resonance, and the binding of an antibody Fab fragment of the antibody to human IL-1 beta inhibits the binding of IL-1 beta to IL-1 beta R1 with an IC50 of less than 30 nM as measured by surface plasmon resonance. 48. An antibody that specifically binds to human VEGF and human IL-1 beta, wherein binding of an antibody Fab fragment of the antibody to human VEGF inhibits binding of VEGF to VEGFR2 with an IC50 of less than 50 nM as measured by surface plasmon resonance; and binding of an antibody Fab fragment of the antibody to human IL-1 beta inhibits binding of IL-1 beta to IL-1 beta R1 with an IC50 of less than 30 nM as measured by surface plasmon resonance. 49. An antibody that specifically binds to human VEGF and human IL1-beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein an antibody Fab fragment of the antibody inhibits the binding of IL-1beta to IL-1betaR1 with an IC50 of less than 30 nM as measured by surface plasmon resonance. 50. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising: (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13; (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14; (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15; (d) a VH domain comprising a human heavy chain framework having (i) FR1 comprising amino acid residues E2, G26, V28, and K30, (ii) FR3 comprising amino acid residues R66, R83, and K94; (e) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16; (f) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17; 8; (g) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 8; and (h) a VL domain comprising a human light chain framework having (i) FR1 comprising amino acid residue I2, (ii) FR2 comprising amino acid residue Y49, and (iii) FR3 comprising amino acid residues G57, E67, D68, and Q69, wherein the numbering of the VH and VL domains is according to the Kabat numbering system, and an antibody Fab fragment of the antibody inhibits the binding of IL-1 beta to IL-1 beta R1 with an IC50 of less than 30 nM as measured by surface plasmon resonance. 51. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a pair of VL and VH domains, comprising: (i) a VH domain comprising amino acid residues E2, G26, V28, K30, W31, N35b, D35c, K52a, D55, H56, Y58, T61, K62, F63, I64, R66, R83, K94, D95, V96, F98, and D101; and (ii) amino acid residues I2, Y27, W27a, , S27c, S27d, L32, Y49, D50, Y53, K54, L56, G57, E67, D68, Q69, Y91, R92, Y93, H94 and Y96, wherein the VH and VL domains are numbered according to the Kabat numbering system, and an antibody Fab fragment of the antibody inhibits the binding of IL-1 beta to IL-1 beta R1 with an IC50 of less than 30 nM as measured by surface plasmon resonance. 52. An antibody that specifically binds to human VEGF and human IL-1 beta, comprising a VH domain comprising (a) a CDR-H1 comprising the amino acid sequence of SEQ ID NO: 13, (b) a CDR-H2 comprising the amino acid sequence of SEQ ID NO: 14, and (c) a CDR-H3 comprising the amino acid sequence of SEQ ID NO: 15, and a VL domain comprising (d) a CDR-L1 comprising the amino acid sequence of SEQ ID NO: 16, (e) a CDR-L2 comprising the amino acid sequence of SEQ ID NO: 17, and (f) a CDR-L3 comprising the amino acid sequence of SEQ ID NO: 8, wherein (a) the VH domain comprises an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 11, and (b) the VL domain comprises an amino acid sequence having at least 90% sequence identity with the amino acid sequence of SEQ ID NO: 12; and wherein binding of an antibody Fab fragment of the antibody to human IL-1 beta inhibits binding of IL-1 beta to IL-1 beta R1 with an IC50 of less than 30 nM as measured by surface plasmon resonance. 53. The antibody of any one of embodiments 1 to 52, which is a monoclonal antibody. 54. The antibody of any one of embodiments 1 to 53, which is an antibody fragment that binds to human VEGF and human IL-1 beta. 55. The antibody of any one of embodiments 1 to 54, which is bispecific. 56. The antibody of any one of embodiments 1 to 55, which is a Fab fragment. 57. The antibody of any one of embodiments 1 to 56, which is a bispecific antibody fragment. 58. The antibody of any one of embodiments 1 to 57, which is multispecific. 59. An isolated nucleic acid encoding the antibody of any one of embodiments 1 to 58. 60. A host cell comprising the nucleic acid of embodiment 59. 61. An expression vector comprising the nucleic acid of embodiment 61. 62. A method for producing an antibody that binds to human VEGF and human IL-1 beta, comprising culturing the host cell of embodiment 60 so that the antibody is produced. 63. The method of embodiment 62, further comprising recovering the antibody from the host cell. 64. An antibody produced by the method of embodiment 62 or 63. 65. A pharmaceutical formulation comprising the antibody of any one of embodiments 1 to 58 and a pharma- ceutically acceptable carrier. 66. The antibody of any one of embodiments 1 to 58 for use as a medicament. 67. The antibody of any one of embodiments 1 to 58, for use in the treatment of a vascular disease. 68. The antibody of any one of embodiments 1 to 58, for use in treating ocular vascular diseases. 69. Use of an antibody according to any one of embodiments 1 to 58 or a pharmaceutical composition according to embodiment 65 in the manufacture of a medicament. 70. Use of an antibody according to any one of embodiments 1 to 58 or a pharmaceutical composition according to embodiment 65 in the manufacture of a medicament for inhibiting angiogenesis. 71. A method for treating an individual having a vascular disease, comprising administering to said individual an effective amount of an antibody of any one of embodiments 1 to 58 or a pharmaceutical composition of embodiment 65. 72. A method for treating an individual having an ocular vascular disease, comprising administering to said individual an effective amount of an antibody of any one of embodiments 1 to 58 or a pharmaceutical composition of embodiment 65. 73. A method for inhibiting angiogenesis in an individual, comprising administering to the individual an effective amount of an antibody of any one of embodiments 1 to 58 or a pharmaceutical composition of embodiment 65 to inhibit angiogenesis.
[0216] [Table C-1]
[0217] [Table C-2]
[0218] [Table C-3]
[0219] [Table C-4] EXAMPLES
[0220] The following examples are presented to aid the understanding of the present invention, the true scope of which is set forth in the appended claims. It is understood that modifications can be made in the procedures set forth without departing from the spirit of the invention.
[0221] Example 1: Generation of bispecific anti-VEGF / anti-IL-1 beta Fab fragments Bispecific anti-VEGF / anti-IL-1beta Fab fragments were generated by independently screening for monospecific antibodies that contain non-overlapping paratopes and bind to VEGF and IL-1beta by methods previously described (e.g., methods described in WO 2012 / 163520) and then fusing the amino acid sequences into a dual paratope VH / VL pair that binds to VEGF and IL-1beta.
[0222] Two different phage display libraries of synthetic Fab fragments were utilized, the first phage display library diversified residues within the CDR-H1, CDR-H3 and CDR-L2 regions of the Fab fragments, and the second phage display library diversified residues within the CDR-L1, CDR-L3 and CDR-H2 regions of the Fab fragments. In each library, the other three CDR regions were kept undiversified as invariant dummy sequences. In both libraries, the CH1 domain of the Fab fragments was fused to a truncated gene III protein via a linker to facilitate phage display.
[0223] Panning of the phage libraries enriched the first library for binders to human IL-1 beta and the second library for binders to human VEGF-A. After panning, plasmid minipreps were prepared for both enriched pools of phagemid vectors. The minipreps were digested with restriction enzymes to excise the region encoding the truncated gene III protein and recircularized by ligation to obtain pools of expression vectors encoding soluble Fab fragments enriched for IL-1 beta or VEGF-A binders, respectively. These vector pools were transformed into TG1 E. coli cells, individual colonies were picked and cultured, and individual Fab clones were soluble expressed in microtiter plates. Supernatants containing soluble Fab fragments were screened for binding to IL-1 beta or VEGF-A using standard ELISA methods, and TG1 clones producing specific binders were subjected to DNA plasmid preparation and sequencing to obtain pairs of VH and VL sequences that specifically bind to either IL-1 beta or VEGF-A, respectively.
[0224] Bispecific anti-VEGF / IL-1 beta VH and VL sequence pairs were designed in silico by (1) substituting CDR-H2 residues that may be part of a VEGF-A specific paratope into an IL-1 beta binder heavy chain by replacing irrelevant VH residues 52b-65 in the VH sequence of an IL-1 beta specific Fab with selected VH residues 52b-65 of a VEGF-A specific Fab, and (2) substituting CDR-L2 residues that may be part of an IL-1 beta specific paratope into a VEGF-A binder light chain by replacing irrelevant VL residues 49-57 in the VL sequence of a VEGF-A specific Fab with selected VL residues 49-57 of an IL-1 beta specific Fab.
[0225] Example 2: Expression of the bispecific anti-VEGF / anti-IL-1 beta Fab fragment 1HVL2.3 The resulting designed pair of bispecific anti-VEGF / anti-IL-1beta VH and VL sequences were synthesized and cloned in frame with gene sequences encoding the CH1 and Ckappa domains into an E. coli expression vector. The vector was transformed into TG1 E. coli cells and individual colonies were cultured for soluble expression of the bispecific antibody Fab fragments. The bispecific antibody was purified from TG1 culture supernatants by affinity chromatography and specific binding to both IL-1beta and VEGF-A was confirmed.
[0226] A bispecific anti-VEGF / anti-IL-1beta antibody "1HVL2.3" was selected and characterized by a heavy chain of SEQ ID NO:9 and a light chain of SEQ ID NO:10.
[0227] For further analysis, the anti-VEGF / anti-IL-1beta antibodies of the invention were transformed into and expressed from HEK293 cells by standard recombinant methods.
[0228] Example 3: Characterization of the bispecific anti-VEGF / anti-IL-1 beta Fab fragment 1HVL2.3 The binding affinity, hydrophilicity, and thermal stability of the bispecific antibody 1HVL2.3 were evaluated as follows.
[0229] VEGF binding kinetics assessed by surface plasmon resonance (SPR): Anti-His capture antibody (GE Healthcare 28995056) was immobilized on a Series S Sensor Chip C1 (GE Healthcare 29104990) using standard amine coupling chemistry, resulting in a surface density of approximately 500 resonance units (RU). HBS-P+ (10 mM HEPES, 150 mM NaCl pH 7.4, 0.05% surfactant P20) was used as running and dilution buffer. Human VEGF121-His was captured on the surface, resulting in ligand densities of approximately 10 and 20 RU, respectively. A dilution series of bispecific anti-VEGF / anti-IL-1 beta Fab fragments (1.2-100 nM, 1:3 dilution) was injected consecutively for 90 seconds each and dissociation was monitored for 3600 seconds at a flow rate of 30 μl / min (single cycle kinetics). The surface was regenerated by injecting 10 mM glycine pH 1.5 for 60 seconds. Bulk refractive index differences were corrected by subtracting a blank injection and by subtracting the response obtained from a control flow cell that did not contain captured human VEGF121. Curve fitting was performed using a 1:1 Langmuir binding model within the Biacore evaluation software. The Multiple Rmax option was selected for global fitting using both ligand densities to provide a more robust fit.
[0230] IL-1b Binding Kinetics as Assessed by Surface Plasmon Resonance (SPR): Anti-Fab capture antibodies (GE Healthcare 28958325) were immobilized on a Series S Sensor Chip C1 (GE Healthcare 29104990) using standard amine coupling chemistry, yielding a surface density of approximately 500 resonance units (RU). Bispecific anti-VEGF / anti-IL-1 beta Fab fragments were captured on the surface, yielding capture levels of approximately 20 RU. A dilution series of 0.74-60 nM (1:3 dilutions) of either human IL-1 beta (PeproTech 200-01B) or cynomolgus IL-1 beta (Sino Biological 90010-CNAE) was injected for 90 s and dissociation was monitored for at least 600 s at a flow rate of 30 μl / min. The surface was regenerated by two successive injections of 10 mM glycine pH 2.1 for 60 s each. Bulk refractive index differences were corrected for by subtracting a blank injection and by subtracting the response obtained from a control flow cell that did not contain captured bispecific anti-VEGF / anti-IL-1 beta Fab fragments. Curve fitting was performed using a 1:1 Langmuir binding model within the Biacore evaluation software.
[0231] Hydrophobic Interaction Chromatography (HIC): Apparent hydrophobicity was determined by injecting 20 μg of bispecific anti-VEGF / anti-IL-1 beta Fab fragments onto a HIC-Ether-5PW (Tosoh) column equilibrated with 25 mM Na phosphate, 1.5 M ammonium sulfate, pH 7.0. Elution was performed with a linear gradient of 0 to 100% buffer B (25 mM Na phosphate, pH 7.0) within 60 min. Retention times were compared to protein standards with known hydrophobicity.
[0232] Thermal stability: Bispecific anti-VEGF / anti-IL-1 beta Fab fragment samples were prepared at 1 mg / mL in 20 mM histidine / histidine chloride, 140 mM NaCl, pH 6.0, transferred to a 384-well optical plate by centrifugation through a 0.4 μm filter plate and covered with paraffin oil. Hydrodynamic radii were repeatedly measured by dynamic light scattering on a DynaPro Plate Reader (Wyatt) while samples were heated from 25°C to 80°C at a rate of 0.05°C / min. Alternatively, samples were transferred to a 10 μL microcuvette array and heated from 25°C to 90°C at a rate of 0.1°C / min while fluorescence data upon excitation with a 266 nm laser and static light scattering data were recorded on an Optim1000 instrument (Avacta).
[0233] The onset temperature of aggregation is defined as the temperature at which the hydrodynamic radius (DLS) or scattered light intensity (Optim1000) begins to increase. The melting temperature is defined as the inflection point in the fluorescence intensity vs. wavelength graph.
[0234] The results are shown in Tables 1 and 2.
[0235] [Table 1]
[0236] [Table 2]
[0237] Example 4: Improvement of the bispecific anti-VEGF / anti-IL-1 beta Fab fragment 1HVL2.3 As mentioned above, the bispecific anti-VEGF / anti-IL-1 beta Fab fragment 1HVL2.3 is very stable, but exhibits affinity for IL-1 beta in the nanomolar range and significant hydrophobicity. For the treatment of ocular vascular diseases that require injection of therapeutic agents into the eye, it is desirable to provide a high affinity for the target antigen and a very high concentration of the therapeutic agent in order to increase the duration of the therapeutic effect and minimize the inconvenience to the patient. Therefore, for this intended purpose, it is desirable to increase the affinity of the antibody and reduce the hydrophobicity to ensure solubility in isotonic buffers at high concentrations.
[0238] Therefore, for clinical application, the antibody required further improvements, e.g., improved binding of IL-1 beta (especially by improving the off-rate) and reduced hydrophobicity. Several rounds of maturation were performed by introducing different amino acid substitutions in the VH and VL domains. During maturation, candidate antibodies derived from antibody 1HVL2.3 were screened and selected based on the desired properties in terms of yield, affinity, simultaneous antigen binding, hydrophilicity, stability, viscosity and other parameters.
[0239] Improved candidate antibodies 1HVL5.15, 1HVL12.85 and RO7200394 were selected from multiple tested candidate antibody molecules. The amino acid sequences of these improved bispecific anti-VEGF / anti-IL-1 beta Fab fragments are set forth in Table 3.
[0240] [Table 3]
[0241] Figures 2 and 3 illustrate the alignment of the variable heavy and variable light domains of the generated bispecific anti-VEGF / anti-IL-1 beta Fab fragments. The numbering of the amino acid positions within the VH and VL domains follows the Kabat numbering system. For simplicity, the numbering has been included in the figures to further indicate the positions of the framework and CDR amino acids.
[0242] Example 5: Improved antigen-binding kinetics of bispecific anti-VEGF / anti-IL-1 beta Fab fragments The binding kinetics of candidate antibodies to VEGF and IL-1 beta were assessed using the indicated bispecific anti-VEGF / anti-IL-1 beta Fab fragments (amino acid sequences as shown in Table 3) as described in Example 3. For comparison, the antigen binding kinetics of prior art anti-VEGF / anti-IL-1 beta antibody 0032, a full length IgG antibody as disclosed in WO 2016 / 075034, is shown.
[0243] The binding kinetics results for IL-1 beta are shown in Tables 4 and 5.
[0244] [Table 4]
[0245] [Table 5]
[0246] The binding kinetics of antibodies 1HVL5.15 and 1HVL12.85 to IL-1 beta of other species and related proteins was assessed by SPR using the same experimental setup as described in Example 3. No binding was observed to rat IL-1 beta, porcine IL-1 beta, human IL-1 alpha and human IL-1RA. Weak binding was observed to mouse and rabbit IL1-beta.
[0247] The VEGF binding kinetics results are shown in Table 6.
[0248] [Table 6]
[0249] Simultaneous antigen binding of candidate antibodies to VEGF and IL-1beta was assessed as follows.
[0250] Anti-His capture antibody (GE Healthcare 28995056) was immobilized on a series S sensor chip C1 (GE Healthcare 29104990) using standard amine coupling chemistry to obtain a surface density of approximately 500 resonance units (RU). HBS-P+ (10 mM HEPES, 150 mM NaCl pH 7.4, 0.05% surfactant P20) was used as running and dilution buffer. Human VEGF121-His was captured on the surface, followed by sequential injections of candidate antibodies and IL-1beta. The surface was regenerated by injecting 10 mM glycine pH 1.5 for 60 seconds. Bulk refractive index differences were corrected by subtracting a blank injection and by subtracting the response obtained from a control flow cell without captured human VEGF121.
[0251] For all improved bispecific anti-VEGF / anti-IL-1 beta Fab fragments, i.e. 1HVL5.15, 1HVL12.85 and RO7200394, simultaneous binding of the candidate antibodies to VEGF and IL-1 beta was confirmed. Figure 4 shows simultaneous binding of anti-VEGF / anti-IL-1 beta 1HVL12.85. Figure 5 shows simultaneous binding of anti-VEGF / anti-IL-1 beta RO7200394.
[0252] Simultaneous antigen binding of the full-length IgG prior art antibody 0032 (WO 2016 / 075034) was also assessed using the same experimental set-up, the results of which are shown in Figure 6.
[0253] Example 6: Inhibition of the binding of VEGF and IL-1 beta to their respective receptors Receptor inhibition assay Inhibition of binding of VEGF and IL-1 beta to their respective receptors, hVEGFR2 and IL-1 beta R1, in the presence of candidate antibody RO7200394 (Fab fragment) was assessed as described below. For comparison, the kinetics of the prior art anti-VEGF / anti-IL-1 beta antibody 0032 (full length IgG), as disclosed in WO 2016 / 075034, was also assessed.
[0254] hVEGFR2 (R&D Systems 357-KD) and IL-1bR1 (Sino Biological 10126-H02H) were immobilized on a Series S Sensor Chip CM5 (GE Healthcare 29104988) using standard amine coupling chemistry on different flow cells, resulting in surface densities of approximately 8000 and 20000 resonance units (RU), respectively. HBS-P+ (10 mM HEPES, 150 mM NaCl pH 7.4, 0.05% surfactant P20) was used as the running and dilution buffer.
[0255] To assess VEGF-receptor binding inhibition, RO7200394 at a final concentration of 200 nM or antibody 0032 at 400 nM were pre-incubated with 50 nM VEGF121. To assess IL-1 beta-receptor binding inhibition, RO7200394 at a final concentration of 200 nM or antibody 0032 at 200 nM were pre-incubated with 50 nM IL-1 beta. Samples were diluted (1:2) with the corresponding 50 nM VEGF121 or IL-1 beta solutions.
[0256] The antibody / ligand mixture was injected over the VEGFR2 or IL-1R1 surface for 60 seconds at a flow rate of 5 μl / min. After a 60 second dissociation phase, the VEGFR2 surface was regenerated by injecting 5 mM NaOH for 60 seconds, whereas the IL-1R1 surface was regenerated by injecting 10 mM glycine pH 3.0 followed by 5 mM NaOH for 60 seconds, respectively. The bulk refractive index difference was corrected by subtracting a blank injection and by subtracting the response obtained from a blank control flow cell. For evaluation, the binding response was taken 5 seconds after the end of the injection. The response obtained in RU was converted to a binding response relative to the initial signal corresponding to the ligand without antibody. IC50 values were calculated using a four-parameter logistic model (XLfit, ID Business Solutions). The results are shown in Tables 7 and 8, as well as Figure 7A (VEGFR2 inhibition in the presence of antibody RO7200394), Figure 7B (VEGFR2 inhibition in the presence of antibody 0032), Figure 8A (IL-1R1 inhibition in the presence of antibody RO7200394) and Figure 8B (IL-1R1 inhibition in the presence of antibody 0032).
[0257] [Table 7]
[0258] [Table 8]
[0259] It is demonstrated that the binding of IL-1 beta to the bispecific anti-VEGF / anti-IL-1 beta Fab fragment of the invention does not prevent the inhibition of the VEGF / VEGFR2 interaction.Also, the binding of VEGF to the bispecific anti-VEGF / anti-IL-1 beta Fab fragment of the invention does not prevent the inhibition of the IL-1 beta / IL-1 beta R1 interaction.
[0260] VEGF competitive ELISA The following buffers were used: PBS (1xPBS pH 7.4); PBST (1xPBST supplemented with 0.1% v / v Tween-20); PBST 1% BSA (PBST supplemented with 1% BSA (Sigma-Aldrich, 30% bovine serum albumin solution in A336); NaHCO 3 (NaHCO 3 solution, made from BupH Buffer Packs (ThermoScientific, 28382); 2%MPBST (PBST supplemented with 2% (w / v) nonfat dry milk (Carl Roth, T145.3)).
[0261] 96-well plates (Maxisorp Nunc-Immoplates) were filled with 200 mM NaHCO 3 The wells were coated with 50 μL / well of rhVEGFR-1-Fc (R&D #321-FL-050) at a final concentration of 1 μg / ml in 10 mL of ethyl acetate (pH 9.4) for 1 hour at room temperature.
[0262] Meanwhile, different concentrations of antibody Fab fragments were preincubated with VEGF to form antibody Fab-VEGF premixes as follows: A dilution series of antibody Fab fragments was prepared by adding 280 μl of antibody Fab fragment solution (409.6 nM antibody in PBST-1% BSA) to wells in the first column of a round-bottom 96-well PS plate. Individual wells in columns 2-12 of the same plate were filled with 140 μl of PBST-1% BSA. Then, a 1:2 dilution was performed by transferring 140 μl of antibody solution to the next column, mixing thoroughly, and transferring 140 μl of this diluted antibody solution to the next column. This was repeated up to column 11. Anything over 140 μl was discarded so that all wells contained 140 μl. Column 12 served as a control (blank). For preincubation with VEGF, round-bottom 96-well PS plates were pre-filled with 50 μl per well of 2 nM VEGF121 (Humanzyme, HZ-1206, lot 614-01) or 2 nM VEGF165 (Humanzyme, HZ-1153, lot 716-01) solutions in PBST-1% BSA. 50 μl of a dilution series of each antibody Fab fragment was added to VEGF121 or VEGF165, respectively, mixed thoroughly and incubated for 1.5 h at room temperature.
[0263] The rhVEGFR-1-Fc coated plate was washed twice with PBST and blocked with 200 μl of 2% MPBST for 45 min. After washing off the MPBST solution twice with PBST, 50 μl of antibody Fab-VEGF premix was added to the plate and incubated at room temperature for 1.5 h. The plate was then washed twice with PBST. Then, 50 μl of a solution containing biotinylated anti-VEGF antibody (R&D, BAF293; diluted 1:2000 in PBST) and SA-HRP (KPL, 14-30-00; diluted 1:2000 in PBST) was added and incubated at room temperature for 30 min. After washing six times with PBST, 50 μl of TMB substrate solution (two-component HRP substrate (KPL, 34021); used at room temperature) was added and incubated at room temperature for 30 min. 50 μl of 1N H 2 SO4 was added and the absorbance was read at 450 nm.
[0264] The results are shown in Figures 9 and 10 and demonstrate improved inhibition of VEGF-R1 binding for 1HVL12.85 and RO7200394 over 1HVL2.3.
[0265] Example 7: Biophysical properties (stability and hydrophobicity) of improved bispecific anti-VEGF / anti-IL-1 beta Fab fragments The indicated biophysical properties of the candidate antibodies were evaluated as described in Example 3 using the indicated bispecific anti-VEGF / anti-IL-1 beta Fab fragments (amino acid sequences as shown in Table 3).
[0266] Table 9 shows the thermal stability and hydrophobicity of the antibodies analyzed. For comparison, the thermal stability of prior art anti-VEGF / anti-IL-1 beta antibody 0032, a full-length IgG antibody as disclosed in WO 2016 / 075034, is included. Chromatograms from HIC are shown in Figure 11 for the bispecific anti-VEGF / anti-IL-1 beta Fab fragment and in Figure 12 for the prior art anti-VEGF / anti-IL-1 beta IgG antibody 0032.
[0267] [Table 9]
[0268] Example 8: Biophysical properties (mechanical viscosity) of an improved bispecific anti-VEGF / anti-IL-1 beta Fab fragment The viscosity of candidate antibodies was assessed using the indicated bispecific anti-VEGF / anti-IL-1 beta Fab fragments (amino acid sequences as depicted in Table 3) as follows. Viscosity was measured by latex-bead DLS method as previously described (He F et al.; Anal Biochem. 2010 Apr 1;399(1):141-3). Briefly, samples were concentrated to >200 mg / mL (based on material availability) using a centrifugal concentrator, e.g., Amicon Ultra-0.5 mL Centrifugal Filter, Ultracel-10K, Cat. No. UFC501096.
[0269] A dilution series was prepared from approximately 10 mg / ml to the maximum feasible concentration, and polysorbate 20 and beads (Nanosphere Size Standards, nominal diameter: 300 nm, 1% solids, ThermoFisher catalog number 3300A) were added to final concentrations of 0.02% (PS20) and 0.03% (w / w, beads), respectively.
[0270] Small aliquots of these samples were centrifuged at maximum speed for 1 min and then protein concentrations were determined by UV280 absorbance.
[0271] The remaining samples were transferred to a 384-well optical plate, covered with a layer of paraffin oil to prevent evaporation, and DLS data were recorded at the indicated temperatures. From the DLS data of apparent hydrodynamic radius of the latex beads, the viscosity of the solutions was calculated as described in He F et al. op. cit. The viscosity at the highest concentration measured is reported in Table 10. The results are also shown in Figure 13 (1HVL12.85) and Figure 14 (RO7200394).
[0272] [Table 10] The results show that the antibodies of the present invention can be formulated at high concentrations, including viscosities below the acceptable viscosity limit for syringeability (maximum 30 cP). Both studies show that the antibodies have high concentration, but the effect is more pronounced for the RO7200394 antibody.
[0273] As a result, the antibodies of the present invention are highly suitable for ocular applications since they can provide a high molar dose with a limited injection volume, which when combined with high potency leads to high durability and therefore reduced dosing frequency, which is desirable for reducing patient discomfort.
[0274] Example 9: Improved chemical stability of bispecific anti-VEGF / anti-IL-1 beta Fab fragments Chemical Degradation Test: Each antibody sample was formulated in 20 mM His / HisCl, 140 mM NaCl, pH 6.0 and split into three aliquots: one aliquot was rebuffered in PBS and two aliquots were stored in the original formulation. The PBS aliquot and one His / HisCl aliquot were incubated at 1 mg / ml at 40°C (His / NaCl) or 37°C (PBS) for two weeks (2w), and the PBS sample was further incubated for a total of four weeks (4w). A third control aliquot was stored at -80°C. After the end of the incubation, the samples were analyzed for relative activity concentration (Biacore; activity concentration of both stressed aliquots of each binder normalized to the unstressed 4°C aliquot), aggregation (SEC), and fragmentation (capillary electrophoresis or SDS-PAGE) and compared to untreated controls.
[0275] The binding activity after stress was evaluated as follows. Anti-Fab capture antibodies (GE Healthcare 28958325) were immobilized on a Series S sensor chip CM5 (GE Healthcare 29104988) using standard amine coupling chemistry to obtain a surface density of 4000-6000 resonance units (RU). HBS-P+ (10 mM HEPES, 150 mM NaCl pH 7.4, 0.05% surfactant P20) was used as running and dilution buffer. Antibody anti-VEGF / anti-IL-1beta antibody 1HVL12.85 with a concentration of 2 μg / ml was injected for 60 seconds at a flow rate of 5 μl / min. HuVEGF121 (in-house preparation) or huIL-1beta (Peprotech 200-01B) were injected for 60 seconds at a concentration of 2 μg / ml, respectively, and dissociation was monitored for 60 seconds at a flow rate of 5 μl / min. The surface was regenerated by two successive injections of 10 mM glycine pH 2.1 for 60 seconds each. Differences in bulk refractive index were corrected by subtracting a blank injection and by subtracting the response obtained from a blank control flow cell. For evaluation, the binding response was taken 5 seconds after the end of the injection. To normalize the binding signal, the VEGF or IL-1 beta binding response was divided by the anti-Fab response. Relative activity concentrations were calculated by referencing each temperature-stressed sample to the corresponding unstressed sample.
[0276] The results are shown in Tables 11 and 12.
[0277] [Table 11]
[0278] [Table 12]
[0279] Example 10: Structural analysis of the improved bispecific anti-VEGF / anti-IL-1 beta Fab fragment 1HVL5.15 Structural analysis of the anti-VEGF / anti-IL-1 beta Fab fragment 1HVL5.15 was carried out by X-ray crystallography as follows.
[0280] Complex formation and crystallization of the ternary complex IL-1 beta-VEGF121-Fab 1HVL5.15 For complex formation, 1HVL5.15 Fab fragment was mixed with human IL1 beta (Peprotech) in a 1:1.1 molar ratio. After 16 h of incubation overnight at 4 °C, human VEGF121 (in-house preparation) was added to obtain the ternary complex concentrated to 10 mg / ml. Initial crystallization trials were performed in a sitting drop vapor diffusion setup at 21 °C. The first microcrystals appeared within 4 days from 1.4 M sodium malonate. Subsequent seeding experiments yielded crystals from 0.1 M sodium cacodylate pH 5.5, 0.1 M calcium acetate, 12% PEG8000. These crystals were picked directly from the screening plate without further optimization steps.
[0281] Data collection and structure determination For data collection, crystals were flash-cooled at 100 K in a precipitant solution supplemented with 15% ethylene glycol as cryoprotectant. Diffraction data were collected at a wavelength of 1.0000 Å using a PILATUS 6M detector at beamline X10SA at the Swiss Light Source (Villigen, Switzerland). Data were processed with XDS (Kabsch, W. Acta Cryst. D66, 133-144 (2010)) and scaled with SADABS (BRUKER). Crystals are in the space group C222 1It diffracted to 2.97 Å resolution with cell axes a=177.97 Å, b=286.70 Å, c=105.39 Å, α=β=90°. The structure was determined by molecular replacement in PHASER (McCoy, AJ et al. J. Appl. Cryst. 40, 658-674 (2007)) using the coordinates of related in-house structures Fab fragment, IL1β, and VEGF pdb entry 1MKK as search models. Structure refinement was performed using programs from the CCP4 suite (Collaborative Computational Project, Number 4 Acta Cryst. D50, 760-763 (1994)) and Buster (Bricogne, G., et al. (2011). Buster version 2.9.5 Cambridge, UK: Global Phasing). Manual reconstruction of the protein using difference electron density was performed in COOT (Emsley, P., et al. Acta Cryst D66, 486-501 (2010)). Data collection and refinement statistics are summarized in Table 13. All graphical representations were generated using PYMOL (DeLano Scientific, Palo Alto, CA, 2002). The structure was solved with the program CONTACT from the CCP4 suite (Collaborative Computational Project, Number4 Acta Cryst.D50,760-763(1994)), and contact distances of up to 4 Å were used to identify paratope and epitope residues.
[0282] [Table 13]
[0283] The amino acid residues in contact with the respective antigens, VEGF and IL-1beta, were identified from the crystal structure of the bispecific anti-VEGF / anti-IL-1beta Fab fragment 1HVL5.15 in complex. The locations of the paratope amino acid residues within the VH and VL domains are shown in Figures 2 and 3.
[0284] Amino acids from the light chain CDR1, CDR3 and heavy chain CDR2 contribute to the VEGF paratope. The VEGF paratope does not include amino acids from the light chain CDR2, heavy chain CDR1 and heavy chain CDR3. The IL-1 beta paratope does not include amino acids from the light chain CDR2.
[0285] The amino acid residues identified as contributing to antigen binding are set forth in Table 14 (for variable heavy domain amino acid residues) and Table 15 (for variable light domain amino acid residues). The amino acid positions are numbered according to the Kabat numbering system (the same numbering is used in Figures 2 and 3). The amino acid positions involved in antigen binding are identified by the Kabat position of the VH or VL domain (see also the numbering in Figures 2 and 3).
[0286] [Table 14]
[0287] [Table 15]
Claims
1. A pharmaceutical composition for use in the treatment of ocular vascular disease, comprising an antibody that specifically binds to human VEGF and human IL-1 beta, the antibody comprising the VH sequence of SEQ ID NO:11 and the VL sequence of SEQ ID NO:
12.
2. The pharmaceutical composition of claim 1, wherein the antibody comprises a heavy chain amino acid sequence of SEQ ID NO: 20 and a light chain amino acid sequence of SEQ ID NO: 19.