Engineered 3'o-kinase variants

Engineered 3'O-kinases overcome the limitations of NQP availability and cost by enhancing the synthesis of nucleoside quadriphosphates, enabling efficient large-scale oligonucleotide production.

WO2025264722A1 Publication Date: 2025-12-26CODEXIS INC
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Patent Information

Application Number
PCT/US2025/034048
Authority / Receiving Office
WO · WO
Patent Type
Applications
Current Assignee / Owner
Priority Date
2024-06-18
Filing Date
2025-06-17
Publication Date
2025-12-26

AI Technical Summary

Technical Problem

The commercial availability and cost of nucleoside tetraphosphates (NQPs) with a phosphate at the 3' position of the sugar are limiting factors for large-scale synthesis of oligonucleotides, particularly in template-independent synthesis applications, as they are not widely available and prohibitively expensive.

Method used

Engineered 3'O-kinase polypeptides, derived from a variant of the wild-type dephospho-CoA kinase (CoaE) from Geobacillus stearothermophilus, are developed to add a phosphate group to the 3' position of natural or modified nucleoside triphosphates, enhancing activity, thermostability, selectivity, and reducing byproduct formation.

Benefits of technology

The engineered 3'O-kinases enable the efficient production of nucleoside quadriphosphates (NQPs), addressing the limitations of existing synthesis methods by improving yield and reducing costs, thus supporting large-scale oligonucleotide synthesis.

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Abstract

The present invention provides engineered 3' O-kinase polypeptides capable of adding a phosphate group to the 3' position of the sugar of a natural or modified nucleoside triphosphate, as well as compositions and methods of utilizing these engineered polypeptides.
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