Terpenoid production and strain
By introducing the MVA pathway and expressing key enzymes in Serratia, the problem of low terpenoid yield in the prior art was solved, and the effect of efficient production of terpenoid compounds was achieved, and the needs of industrial production were met.
Patent Information
- Application Number
- CN202311220970.8
- Authority / Receiving Office
- CN · China
- Patent Type
- Applications(China)
- Current Assignee / Owner
- Filing Date
- 2023-09-19
- Publication Date
- 2025-04-01
AI Technical Summary
In the prior art, using E. coli and Saccharomyces cerevisiae as host cells, the yield of terpenoid compounds can only reach 1-2g·L-1, which cannot meet the needs of industrial production.
The MVA pathway is introduced in Serratia, and key enzymes such as acetoacetyl-CoA thiolase, HMG-CoA synthetase, HMG-CoA reductase, etc. are combined with specific expression vectors and fermentation conditions to improve the production efficiency of terpenes.
Through this method, Serratia engineered bacteria were fermented in a 50mL shake flask for 72 hours, and the production of terpene compounds such as linalool, isoprene, isoprene, isopreneol and isopreneol significantly increased, reaching 13.01g·L-1, 12.95g·L-1 and 11.79g·L-1, etc., meeting industrial needs.
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Figure CN119736218A_ABST
Abstract
Description
Technical Field
[0001] The invention relates to the production of terpenoid compounds and a strain thereof, belonging to the technical field of bioengineering. Background Art
[0002] Terpenoids are also known as isoprenoids. There are more than 75,000 known terpenoids, making them the most diverse class of natural products. They have a large market demand and are widely used in many industries, such as biofuels (isoprenoids), antimalarial drugs (artemisinin), anticancer drugs (paclitaxel), colorants for food and feed (carotenoids), and natural organic solvents in household cleaners (limonene).
[0003] Microorganisms produce terpenoids in vivo through the 2-C-methyl-D-erythritol-4-phosphate pathway (MEP pathway) or the mevalonate pathway (MVA pathway) 5 Precursors are isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP). 5 The precursor can be directly used to prepare hemiterpene compounds (C 5 ), or by condensation of C 5 The precursor generates a longer geranyl pyrophosphate (GPP, C 10 ), farnesyl pyrophosphate (FPP, C 15 ) and geranylgeranyl pyrophosphate (GGPP, C 20 ) and other pyrophosphate intermediates. The pyrophosphate intermediates are converted into monoterpenes (C 10 ), sesquiterpenes (C 15 ) and diterpenes (C 20 ) and other terpenoid compounds.
[0004] In recent years, with the development of metabolic engineering and synthetic biology, terpenoids have been produced in microorganisms, mainly using Escherichia coli and Saccharomyces cerevisiae as host cells. However, the yield of terpenoids produced by these host cells can only reach 1-2 g·L -1 , which cannot meet the needs of industrial production. Due to the large market demand for terpenoids, there is still a need for an expression system for producing terpenoids. Summary of the invention
[0005] The present invention provides a method for large-scale production of terpenoids using the MVA pathway in Serratia. Examples of terpenoids include: hemiterpenes (C 5 ) such as isoprene, isopentanol; monoterpenes (C 10 ) such as 1,8-cineole, linalool, α-pinene, β-pinene, γ-terpinene, geraniol, limonene, myrcene, β-ocimene, sabinene; sesquiterpenes (C 15) such as bisabolol, farnesol, longifolene, valeriane, elemene, farnesene, patchouliol, terpenes and santalene.
[0006] The invention provides a Serratia engineering bacterium, which uses Serratia marcescens HBQA7 as a chassis cell and expresses acetoacetyl-CoA thiolase, HMG-CoA synthetase, HMG-CoA reductase, mevalonate kinase, phosphomevalonate kinase and pyrophosphomevalonate decarboxylase;
[0007] The deposit number of the Serratia HBQA7 is CCTCC NO: M 2023184.
[0008] In one embodiment, the engineered Serratia bacteria expressing acetoacetyl-CoA thiolase, HMG-CoA synthetase, HMG-CoA reductase, mevalonate kinase, phosphomevalonate kinase and pyrophosphate mevalonate decarboxylase further express a combination of any of the following enzymes:
[0009] (1) isopentenyl pyrophosphate isomerase, geranyl pyrophosphate synthase, and any one of (R)-linalool synthase, 1,8-cineole synthase, α-pinene synthase, pinene synthase, γ-terpinene synthase, geraniol synthase, (+)-limonene synthase, (-)-limonene synthase, myrcene synthase, β-ocimene synthase or sabinene synthase;
[0010] (2) any one of isopentenyl pyrophosphate isomerase, farnesyl pyrophosphate synthase, and (-)-α-bisabolol synthase, phosphatase, longifolene synthase, valencene synthase, germacrene A synthase, farnesene synthase, patchouliol synthase, terpenoid synthase, or α-santalene synthase;
[0011] (3) Isoprene synthase or isopentenol synthase.
[0012] In one embodiment, the amino acid sequence of the acetoacetyl-CoA thiolase is shown in SEQ ID No: 1, the amino acid sequence of the HMG-CoA synthetase is shown in SEQ ID No: 2, the amino acid sequence of the HMG-CoA reductase is shown in SEQ ID No: 3, the amino acid sequence of the mevalonate kinase is shown in SEQ ID No: 4, the amino acid sequence of the phosphomevalonate kinase is shown in SEQ ID No: 5, the amino acid sequence of the pyrophosphate mevalonate decarboxylase is shown in SEQ ID No: 6, the amino acid sequence of the isopentenyl pyrophosphate isomerase is shown in SEQ ID No: 7, the amino acid sequence of the geranyl pyrophosphate synthase is shown in SEQ ID No: 8, the amino acid sequence of the (R)-linalool synthase is shown in SEQ ID No: 9, the amino acid sequence of the 1,8-cineole synthase is shown in SEQ ID No: 10, the amino acid sequence of the α-pinene synthase is shown in SEQ ID No: 11, and the amino acid sequence of the pinene synthase is shown in SEQ ID No: 12. ID No: 12, the amino acid sequence of the γ-terpinene synthase is shown in SEQ ID No: 13, the amino acid sequence of the geraniol synthase is shown in SEQ ID No: 14, the amino acid sequence of the (+)-limonene synthase is shown in SEQ ID No: 15, the amino acid sequence of the (-)-limonene synthase is shown in SEQ ID No: 16, the amino acid sequence of the myrcene synthase is shown in SEQ ID No: 17, the amino acid sequence of the β-ocimene synthase is shown in SEQ ID No: 18, the amino acid sequence of the sabinene synthase is shown in SEQ ID No: 19, the amino acid sequence of the (-)-α-bisabolol synthase is shown in SEQ ID No: 20, the amino acid sequence of the farnesyl pyrophosphate synthase is shown in SEQ ID No: 21, the amino acid sequence of the phosphatase is shown in SEQ ID No: 22, the amino acid sequence of the longifolene synthase is shown in SEQ ID No: 23, the amino acid sequence of the valencene synthase is shown in SEQ ID No: 24, the germacrene The amino acid sequence of the A synthase is shown in SEQ ID No: 25, the amino acid sequence of the farnesene synthase is shown in SEQ ID No: 26, the amino acid sequence of the patchouli alcohol synthase is shown in SEQ ID No: 27, the amino acid sequence of the cyclopentene synthase is shown in SEQ ID No: 28, the amino acid sequence of the α-santalene synthase is shown in SEQ ID No: 29, the amino acid sequence of the isoprene synthase is shown in SEQ ID No: 30, and the amino acid sequence of the isopentenol synthase is shown in SEQ ID No: 31.
[0013] In one embodiment, the nucleotide sequence encoding the acetoacetyl-CoA thiolase is shown in SEQ ID No:33, the nucleotide sequence encoding the HMG-CoA synthetase is shown in SEQ ID No:38, the nucleotide sequence encoding the HMG-CoA reductase is shown in SEQ ID No:39, the GenBank accession number of the nucleotide sequence encoding the mevalonate kinase is NC_001145REGION:684467..685798, the GenBank accession number of the nucleotide sequence encoding the phosphomevalonate kinase is NC_001145REGION:712316..713671, the GenBank accession number of the nucleotide sequence encoding the pyrophosphate mevalonate decarboxylase is NC_001146 REGION:701895..703085, and the GenBank accession number of the nucleotide sequence encoding the isopentenyl pyrophosphate isomerase is NC_000913 REGION:3033065..3033613, the nucleotide sequence encoding the geranyl pyrophosphate synthase is shown in SEQ ID No:40, the nucleotide sequence encoding the 1,8-cineole synthase is shown in SEQ ID No:44, the nucleotide sequence encoding the (R)-linalool synthase is shown in SEQ ID No:41, the nucleotide sequence encoding the α-pinene synthase is shown in SEQ ID No:45, the nucleotide sequence encoding the pinene synthase is shown in SEQ ID No:46, the nucleotide sequence of the γ-terpinene synthase is shown in SEQ ID No:47, the amino acid sequence encoding the geraniol synthase is shown in SEQ ID No:48, the nucleotide sequence encoding the (+)-limonene synthase is shown in SEQ ID No:49, the nucleotide sequence of the (-)-limonene synthase is shown in SEQ ID No:50, the nucleotide sequence of the myrcene synthase is shown in SEQ ID No:51, the nucleotide sequence of the β-ocimene synthase is shown in SEQ ID No:52, the nucleotide sequence encoding the sabinene synthase is shown in SEQ ID No:53, and the GenBank accession number of the nucleotide sequence encoding the farnesyl pyrophosphate synthase is NC_000913 REGION:complement(440202..441101), the nucleotide sequence encoding the (-)-α-bisabolol synthase is shown in SEQ ID No: 54, the nucleotide sequence encoding the phosphatase is shown in SEQ ID No: 55, the nucleotide sequence encoding the longifolene synthase is shown in SEQ ID No: 56, the nucleotide sequence encoding the valencene synthase is shown in SEQ ID No: 57, the nucleotide sequence encoding the germacrene A synthase is shown in SEQ ID No: 58, the nucleotide sequence encoding the farnesene synthase is shown in SEQ ID No: 59, the nucleotide sequence encoding the patchouliol synthase is shown in SEQ ID No: 60, the nucleotide sequence encoding the cycloterpene synthase is shown in SEQ ID No: 61, the nucleotide sequence encoding the α-santalene synthase is shown in SEQ ID No: 62, the nucleotide sequence encoding the isoprene synthase is shown in SEQ ID No: 42, and the nucleotide sequence encoding the isopentenol synthase is shown in SEQ ID No: 43. .
[0014] In one embodiment, the expression vector used includes, but is not limited to, pBBR1MCS-2, pBbA5c-RFP or pUCP18.
[0015] The present invention also provides a method for producing terpenoid compounds by using the engineered Serratia bacteria. The engineered Serratia bacteria are inoculated into a fermentation medium for fermentation at 30°C and 200 rpm for at least 72 hours.
[0016] In one embodiment, the fermentation medium includes glucose, 60 g·L -1 ;Na 2 HPO 4 12H 2 O, 17.1 g·L -1 ; KH 2 PO 4 , 3.0 g·L -1 ; NaCl, 3.0 g·L -1 NH 4 Cl, 1.0 g L -1 ; Yeast extract, 5.0 g·L -1 ; Citric acid, 0.2 g·L -1 MgSO 4 , 1.0 mM; CaCl 2 , 0.1mM; thiamine hydrochloride, 0.008g·L -1 ; D-(+) biotin, 0.008 g·L -1 ; Niacin, 0.008 g·L -1 ; Pyridoxine, 0.032 g·L-1 ; Trace metal solution, 1mL·L -1 ;
[0017] The trace metal solution includes NaCl, 5-15 g·L -1 ; Citric acid, 30-50 g·L -1 ; ZnSO 4 7H 2 O, 0.5-5g·L -1 ; MnSO 4 ·H 2 O, 20-40 g·L -1 ;CuSO 4 ·5H 2 O, 0.1-5g·L -1 ;H 3 BO 3 , 0.1-5g·L -1 ;Na 2 MoO 4 ·2H 2 O, 0.1-5g·L -1 ;FeSO 4 7H 2 O, 0.5-5g·L -1 ;CoCl 2 6H 2 O, 0.5-5g·L -1 .
[0018] In one embodiment, feed supplement is also performed during the fermentation process, and the medium used for feed supplement includes glucose, 500-700 g·L -1 ; KH 2 PO 4 , 5-15g·L -1 MgSO 4 , 2-5g·L -1 ; K 2 SO 4 , 2-5g·L -1 ;Na 2 SO4, 0.1-0.5 g·L -1 ; Thiamine hydrochloride, 0.01-0.05 g·L -1 ; D-(+) biotin, 0.01-0.05 g·L -1 ; Niacin, 0.01-0.05 g·L -1 ; Pyridoxine, 0.01-0.05 g·L -1 ; p-Aminobenzoic acid, 0.01-0.05 g·L -1 ; Trace metal solution 5-15mL·L -1 .
[0019] In one embodiment, the pH of the fermentation broth is adjusted to 6-8 with 25% aqueous ammonia.
[0020] In one embodiment, 10% by volume of dodecane is added to the culture medium.
[0021] The present invention also provides the use of the engineered Serratia bacteria in the production of terpenoid compounds, examples of which include: hemiterpenoids (C 5 ) such as isoprene, isopentanol; monoterpenes (C 10 ) such as 1,8-cineole, linalool, α-pinene, β-pinene, γ-terpinene, geraniol, limonene, myrcene, β-ocimene, sabinene; sesquiterpenes (C 15 ) such as bisabolol, farnesol, longifolene, valeriane, elemene, farnesene, patchouliol, terpenes and santalene.
[0022] Beneficial Effects
[0023] The present invention provides an engineered Serratia bacteria and a method for producing terpenoid compounds. The engineered Serratia bacteria constructed by the present invention can be used to produce hemiterpenoids, monoterpenoids or sesquiterpenoids using the MVA pathway. The yield of linalool produced in a 50 mL shake flask is 13.01 g·L after fermentation for 72 h. -1 The isoprene production reached 12.95 g·L -1 The production of isopentenol reached 11.79 g·L -1 The production of 1,8-cineole reached 11.67 g·L -1 , the yield of α-pinene reached 10.70 g·L -1 The yield of pinene reached 10.15 g·L -1 The yield of γ-terpinene reached 11.61 g·L -1 The yield of geraniol reached 11.88 g·L -1 The production of (+)-limonene reached 10.89 g·L -1 The production of (-)-limonene reached 11.04 g·L -1 The production of myrcene reached 11.36 g·L -1 The yield of β-ocimene reached 11.86 g·L -1 The yield of sabinene reached 10.43 g·L -1 The production of (-)-α-bisabolol reached 10.08 g·L -1 The yield of (-)-α-bisabolol reached 10.33 g·L -1 , the production of longifolene reached 10.50 g·L -1The yield of valencene reached 10.10 g·L -1 The production of β-elemene reached 10.72 g·L -1 The production of farnesene reached 10.61 g·L -1 The yield of patchouli alcohol reached 10.38 g·L -1 The production of terpenes reached 10.26 g·L -1 The yield of α-santalene reached 11.40 g·L -1 In a 30L fermentation tank, the yield of linalool produced by the engineered bacteria Serratia was 40.72 g·L -1 .
[0024] Biomaterial Deposit
[0025] A strain of Serratia marcescens HBQA7 with high tolerance to organic solvents, taxonomically named Serratia marcescens HBQA7, was deposited in the China Center for Type Culture Collection on February 23, 2023, with the deposit number CCTCC NO: M 2023184, and the deposit address is Wuhan University, Wuhan, China. BRIEF DESCRIPTION OF THE DRAWINGS
[0026] Figure 1 is a schematic diagram of the MVA pathway.
[0027] Figure 2 Schematic diagram of the conversion of isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP) to geranyl pyrophosphate (GPP), farnesyl pyrophosphate (FPP) and the synthesis of various terpenoids. DETAILED DESCRIPTION
[0028] 1. Strains
[0029] Illustrative examples of Serratia include, but are not limited to, Serratia fonticola ATCC 29845, Serratia odorifera ATCC 33077, Serratia plymuthica ATCC 15928, Serratia liquefaciens ATCC 27592, Serratia rubidaea ATCC 19279, Serratia oryzae ATCC 1011, Serratia ureilytica ATCC BAA-2620, Serratia entomophila ATCC 43705, Serratia ficaria ATCC 33105, Serratia marcescens ATCC 13880, and Serratia proteamaculans ATCC 19323, all of which are available from the ATCC culture collection. Serratia symbiotica DSM 23270, Serratia nematodiphila DSM 21420, Serratia quinivorans DSM 4597 and Serratia grimesi DSM 30063 were purchased from the DSMZ strain bank in Germany. Serratia marcescens HBQA7 was deposited in the China Center for Type Culture Collection, with the deposit number of CCTCC NO: M 2023184.
[0030] 2. MVA approach
[0031] A schematic diagram of the MVA pathway is shown in Figure 1 Typically, the pathway consists of seven steps.
[0032] In the first step, two acetyl-CoA molecules are condensed under the catalysis of an enzyme to form acetoacetyl-CoA. An enzyme known to catalyze this step is, for example, acetyl-CoA thiolase (also known as acetyl-CoA acyltransferase). Illustrative examples of nucleotide sequences include, but are not limited to: NC_000913 REGION:2326109..2327293 (Escherichia coli), L20428 (Saccharomyces cerevisiae), AB120846 (Yarrowia lipolytica), CP000673 REGION:complement(3734524..3735705) (Clostridium kluyveri) and CP000926 REGION:complement(2395644..2396828) (Pseudomonas putida).
[0033] In the second step, the acetoacetyl-CoA molecule is condensed with another acetyl-CoA molecule under the catalysis of the enzyme to generate 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). An enzyme known to catalyze this step is, for example, HMG-CoA synthetase. Illustrative examples of nucleotide sequences include, but are not limited to: NC_001145 REGION: complement (19060..20535) (Saccharomyces cerevisiae), X96617 (Saccharomyces cerevisiae), KQ957425 REGION: 17967..19133 (Staphylococcus aureus), KQ971255 REGION: 36726..37925 (Streptococcus salivarius) and CP107570 REGION: 631050..632207 (Lactobacillus reuteri).
[0034] In the third step, HMG-CoA generates mevalonate under the catalysis of an enzyme. An enzyme known to catalyze this step is, for example, HMG-CoA reductase. Illustrative examples of nucleotide sequences include, but are not limited to: NM_001182434 (Saccharomyces cerevisiae), KQ957425 REGION: complement (16436..17713) (Staphylococcus aureus) and CP053337 REGION: complement (1368799..1370073) (Lactobacillus plantarum).
[0035] In the fourth step, mevalonate is catalyzed by an enzyme to generate 5-phosphomevalonate. An enzyme known to catalyze this step is, for example, mevalonate kinase. Illustrative examples of nucleotide sequences include, but are not limited to, NM_001182715 (Saccharomyces cerevisiae), CP021501 REGION: complement (1519619..1520557) (Lactobacillus plantarum), NZ_JAJGVW010000060 REGION: 10049..10999 (Lactobacillus reuteri) and AP017922 REGION: 598766..599686 (Staphylococcus aureus).
[0036] In the fifth step, 5-phosphomevalonate is catalyzed by an enzyme to generate 5-pyrophosphate mevalonate. An enzyme known to catalyze this step is, for example, phosphomevalonate kinase. Illustrative examples of nucleotide sequences include, but are not limited to, NC_001145 REGION:712316..713671 (Saccharomyces cerevisiae), AP017922 REGION:600687..601763 (Staphylococcus aureus) and CP021501 REGION:complement (1517474..1518565) (Lactobacillus plantarum).
[0037] In the sixth step, 5-pyrophosphate mevalonate is catalyzed by an enzyme to generate IPP. An enzyme known to catalyze this step is, for example, pyrophosphate mevalonate decarboxylase. Illustrative examples of nucleotide sequences include, but are not limited to: NC_001146 REGION:701895..703085 (Saccharomyces cerevisiae), AP018405 REGION:81403..82380 (Lactobacillus plantarum) and AF290095 (Enterococcus faecium).
[0038] In the seventh step, IPP generates DMAPP under the catalysis of an enzyme. An enzyme known to catalyze this step is, for example, isopentenyl pyrophosphate isomerase. Illustrative examples of nucleotide sequences include, but are not limited to: NC_000913 REGION:3033065..3033613 (Escherichia coli), NC_001148 REGION:complement(327864..328730) (Saccharomyces cerevisiae), JGZB01000001 REGION:183234..184370 (Bifidobacterium), AB047343 (Bacillus subtilis) and AB047344 (Staphylococcus aureus).
[0039] 3. Hemiterpenes (C 5 Compound)
[0040] The hemiterpenes (C 5 Compound) is derived from IPP and DMPAA from one isoprene unit.
[0041] Isoprene
[0042] Isoprene, whose structure is
[0043]
[0044] Isoprene is produced by isoprene synthase using IPP as a substrate. Illustrative examples of nucleotide sequences include, but are not limited to, AY341431 (Populus tremuloides), JN173040 (Populus fremontii), NC_065541 REGION: complement (36965861 .. 36968472) (Quercus robur), AB198180 (Populus alba), and LC006091 (Ficus virgata).
[0045] Isopentenol(including 3-methyl-3-butene-1-ol (isoprenol) and 3-methyl-2-butene-1-ol (prenol))
[0046] 3-Methyl-3-butene -1 -alcohol, whose structure is
[0047]
[0048] 3-Methyl-3-buten-1-ol is produced by isopentenol synthase using IPP as a substrate. Illustrative examples of suitable nucleotide sequences include, but are not limited to: NC_000964 REGION: complement (2458509..2459066) (Bacillus subtilis) and NC_000913 REGION: complement (1948180..1948632) (Escherichia coli).
[0049] 3-Methyl-2-butene-1-ol, whose structure is
[0050]
[0051] 3-Methyl-2-buten-1-ol is produced by prenol synthase using DMAPP as a substrate. Illustrative examples of suitable nucleotide sequences include, but are not limited to: NC_000964 REGION: complement (2458509..2459066) (Bacillus subtilis) and NC_000913 REGION: complement (1948180..1948632) (Escherichia coli).
[0052] 4. Monoterpenes (C 10 Compound)
[0053] The monoterpene (C 10 Compound) is derived from geranyl pyrophosphate (GPP). GPP is generated by the condensation of IPP and DMPAA under enzyme catalysis and is derived from two isoprene units. An enzyme known to catalyze this step is, for example, geranyl pyrophosphate synthase.
[0054] Figure 2 It shows that IPP and DMAPP generate GPP, which can further generate monoterpenes under the catalysis of monoterpene synthase.
[0055] Illustrative examples of suitable nucleotide sequences for geranyl pyrophosphate synthase include, but are not limited to, AF513111 (Abies grandis), AF513112 REGION: 122..1267 (Abies grandis), AF513113 (Abies grandis), KT751181 (Dunaliella viridis), Y17376 (Arabidopsis thaliana), MN937451 (Pinus massoniana), AY351862 REGION: 35..1000 (Vitis vinifera), AJ243739 REGION: 1..966 (Citrus sinensis) and KR080467 (Morus alba).
[0056] GPP is then converted into a variety of monoterpenes. Illustrative examples of monoterpenes include, but are not limited to:
[0057] 1,8-Cineole
[0058] 1,8-Cineole, whose structure is
[0059]
[0060] 1,8-Cineole is produced from GPP by 1,8-Cineole synthase. Illustrative examples of suitable nucleotide sequences for 1,8-Cineole synthase include, but are not limited to: AF051899 (Salvia officinalis), NZ_CM000914REGION:1045780..1046772 (Streptomyces clavuligerus), KJ433271 (Hypoxylon sp. E7406B), AY691947 (Arabidopsis thaliana), AB110638 (Citrus unshiu) and JN701460 (Lavandula latifolia).
[0061] (R)-Linalool
[0062] (R)-linalool, whose structure is
[0063]
[0064] (R)-linalool is produced from GPP by (R)-linalool synthase. Illustrative examples of suitable nucleotide sequences for (R)-linalool synthase include, but are not limited to: NZ_CM000914 REGION: complement (1309818..1310807) (Streptomyces clavuligerus), MT178265 (Camellia sinensis), AY693647 (Ocimum basilicum) and (Artemisia annua)
[0065] (S)-Linalool
[0066] (S)-linalool, whose structure is
[0067]
[0068] (S)-linalool is produced from GPP by (S)-linalool synthase. Illustrative examples of suitable nucleotide sequences for (S)-linalool synthase include, but are not limited to: U58314 REGION:32..2644 (Clarkia breweri), JX133149 (Cinnamomum osmophloeum), NC_056623 REGION:complement(227852315..227860073) (Lactuca sativa), GQ338153 REGION:8..1732 (Actinidia arguta) and KF700700 (Coriandrum sativum).
[0069] α-Pinene
[0070] α-pinene has the structure
[0071]
[0072] α-pinene is produced from GPP by α-pinene synthase. Illustrative examples of suitable nucleotide sequences for α-pinene synthase include, but are not limited to: (+)-α-pinene synthase AF543530 (Pinus taeda), (+)-α-pinene synthase DQ839405 (Cannabis sativa), and (-)-α-pinene synthase AF543530 REGION:32..1921 (Pinus taeda).
[0073] β-pinene
[0074] β-pinene has the structure
[0075]
[0076] β-pinene is produced from GPP by β-pinene synthase. Illustrative examples of suitable nucleotide sequences for β-pinene synthase include, but are not limited to: (-)-β-pinene synthase AF276072 REGION: 1..1749 (Artemisia annua), (-)-β-pinene synthase MT624789 (Chrysanthemum indicum) and (-)-β-pinene synthase AF514288 REGION: 26..1834 (Citrus limon).
[0077] γ-Terpinene
[0078] γ-Terpinene has the structure
[0079]
[0080] γ-Terpinene is produced from GPP by γ-terpinene synthase. Illustrative examples of suitable nucleotide sequences for γ-terpinene synthase include, but are not limited to: OM856342 (Nigella sativa), KF700699 (Coriandrum sativum), KR920616 (Thymus vulgaris), and AF514286 REGION:30..1832 (Citrus limon).
[0081] Geraniol
[0082] Geraniol, whose structure is
[0083]
[0084] Geraniol is produced from GPP by geraniol synthase. Illustrative examples of suitable nucleotide sequences for geraniol synthase include, but are not limited to: AY362553 (Ocimum basilicum), KF951406 (Valeriana officinalis), GU136162 (Lippia dulcis), KT633829 REGION:82..1866 (Camptotheca acuminata) and MK182263 (Gardenia jasminoides).
[0085] Limonene
[0086] (+)-Limonene, whose structure is
[0087]
[0088] (+)-limonene is produced from GPP by (+)-limonene synthase. Illustrative examples of suitable nucleotide sequences for (+)-limonene synthase include, but are not limited to: AF514287 (Citrus limon) and KU746814 (Citrus sinensis).
[0089] (-)-Limonene, whose structure is
[0090]
[0091] (-)-limonene is produced from GPP by (-)-limonene synthase. Illustrative examples of suitable nucleotide sequences for (-)-limonene synthase include, but are not limited to: AF241793 REGION:263..4300 (Perilla frutescens), L13459 (Mentha spicata), and DQ839404 (Cannabis sativa).
[0092] Myrcene
[0093] Myrcene, whose structure is
[0094]
[0095] Myrcene is produced from GPP by myrcene synthase. Illustrative examples of suitable nucleotide sequences for myrcene synthase include, but are not limited to: AF271259 REGION:59..1885 (Perilla frutescens), AJ304839 REGION:33..1826 (Quercus ilex), U87908 REGION:69..1952 (Abiesgrandis), AY195609 REGION:510..2264 (Antirrhinum majus), AY693649 (Ocimum basilicum), FR822739 (Alstroemeria peruviana), EU760349 (Humulus lupulus), KY014561 (Cannabis sativa)) and AY473626 (European spruce (Picea abies)).
[0096] β-Ocimene
[0097] β-Ocimene has the structure
[0098]
[0099] β-Ocimene is produced from GPP by β-Ocimene synthase. Illustrative examples of suitable nucleotide sequences for β-Ocimene synthase include, but are not limited to: AY151086 (Arabidopsis thaliana), EU194553REGION:71..1852 (Phaseolus lunatus), AY195607 (Antirrhinum majus) and AY575970 (Lotus japonicus).
[0100] Sabinene
[0101] (+)-Sabinene has the structure
[0102]
[0103] (+)-Sabinene is produced from GPP by (+)-sabinene synthase. Illustrative examples of suitable nucleotide sequences for (+)-sabinene synthase include, but are not limited to: AF051901 (Salvia officinalis), HQ336804 (Picea sitchensis), and KC767281 (Thuja plicata).
[0104] (-)-Sabinene has the structure
[0105]
[0106] (-)-Sabinene is produced from GPP by (-)-sabinene synthase. Illustrative examples of suitable nucleotide sequences for (-)-sabinene synthase include, but are not limited to: KX171229 (Murraya koenigii).
[0107] 5. Sesquiterpenes (C 15 Compound)
[0108] The sesquiterpenes (C 15 Compound) is derived from farnesyl pyrophosphate (FPP). FPP is produced by the condensation of two molecules of IPP and one molecule of DMAPP under the catalysis of an enzyme and is derived from three isoprene units. An enzyme known to catalyze this step is, for example, farnesyl pyrophosphate synthase.
[0109] Figure 2 It shows that IPP and DMAPP generate FPP, and FPP can further generate sesquiterpenes under the catalysis of sesquiterpene synthase.
[0110] Illustrative examples of suitable nucleotide sequences for farnesyl pyrophosphate synthase include, but are not limited to, D00694 (Escherichia coli), YSCFPP (Saccharomyces cerevisiae), L46349 (Arabidopsis thaliana), JF273657 (Lilium longiflorum), D85317 (Oryza sativa), AF330036 (Zea mays), DQ087959 (Panax ginseng), AF048747 (Lycopersicon esculentum), and AF384040 (Mentha x piperita).
[0111] FPP is then converted into a variety of sesquiterpenes. Illustrative examples of sesquiterpenes include, but are not limited to:
[0112] α-Bisabolol
[0113] α-Bisabolol has the structure
[0114]
[0115] α-Bisabolol is produced from FPP by α-bisabolol synthase. Illustrative examples of suitable nucleotide sequences for α-bisabolol synthase include, but are not limited to: (+)-α-bisabolol synthase LC106016 (Artemisia kurramensis), (+)-α-bisabolol synthase LC106015 (Artemisia maritima), (-)-α-bisabolol synthase KJ020282 (Matricaria recutita) and (-)-α-bisabolol synthase NC_037542 REGION: 15218505..15222154 (Cynara cardunculus).
[0116] Farnesol
[0117] Farnesol, whose structure is
[0118]
[0119] Farnesol is produced by hydrolysis of FPP by a phosphatase. Illustrative examples of suitable nucleotide sequences for phosphatases include, but are not limited to: NC_001136 REGION:complement(1418550..1420250) (Saccharomyces cerevisiae) and NC_000913 REGION:1339330..1340094 (Escherichia coli).
[0120] Longifolene
[0121] Longifolene, whose structure is
[0122]
[0123] Longifolene is produced from FPP by longifolene synthase. Illustrative examples of suitable nucleotide sequences for longifolene synthase include, but are not limited to: MN832900 (Pinus massoniana), AY473625 (Picea abies), HQ426158 (Picea engelmannii x Picea) and EF679332 (Pinus sylvestris).
[0124] Valerian
[0125] Valencene, whose structure is
[0126]
[0127] Valenene is produced from FPP by valenene synthase. Illustrative examples of suitable nucleotide sequences for valenene synthase include, but are not limited to: AF441124 (citrus sinensis) and JX040471 (Callitropsis nootkatensis).
[0128] β-elemene
[0129] β-elemene has the structure
[0130]
[0131] FPP generates Germacrene A under the action of germacrene A synthetase, and then is converted into β-elemene through an in vitro one-step chemical reaction. Illustrative examples of suitable nucleotide sequences of germacrene A synthetase include, but are not limited to: AF489965 REGION:70..1743 (Lactuca sativa), AJ304452 REGION:41..1690 (Solidago canadensis) and DQ186657 (Crepidiastrum sonchifolium).
[0132] Farnesene
[0133] Farnesene, whose structure is
[0134]
[0135] Farnesene is produced from FPP by farnesene synthase. Illustrative examples of suitable nucleotide sequences for farnesene synthase include, but are not limited to: AF024615 (Mentha x piperita) and AY835398 (Artemisia annua).
[0136] Patchouli
[0137] Patchouliol has the structure
[0138]
[0139] Patchouliol is produced from FPP by patchouliol synthase. Illustrative examples of suitable nucleotide sequences for patchouliol synthase include, but are not limited to: MT451872 (Pogostemon cablin).
[0140] Cyclic terpenes
[0141] The structure of cycloterpenes is
[0142]
[0143] Pentalenene synthase is produced from FPP. Illustrative examples of suitable nucleotide sequences for pentalenene synthase include, but are not limited to: BQMC01000001 REGION:3211917..3213532 (Aspergillus niger) and U05213 (Streptomyces spp.).
[0144] Santalene
[0145] α-Santalene has the structure
[0146]
[0147] β-Santalene has the structure
[0148]
[0149] Santalene is produced from FPP by a santalene synthase. Illustrative examples of suitable nucleotide sequences for a santalene synthase include, but are not limited to, α- / β-santalene synthase JX826486 (Santalum album), α- / β-santalene synthase HQ343278 (Santalum spicatum), α- / β-santalene synthase HQ343277 (Santalum austrocaledonicum), and α-santalene synthase HQ452480 (Clausena lansium).
[0150] 6. Construction of terpenoid production pathway
[0151] The present invention utilizes the MVA pathway in host cells to achieve high-level production of terpenoid compounds.
[0152] The nucleotide sequence can be expressed by one or two vectors. For example, an expression vector can contain at least two, three, four, five, six or all sequences encoding MVA pathway enzymes. The number of vectors depends on the size of the heterologous sequence and the capacity of the vector, mainly depending on the yield of terpenoids when expressed in the selected host cell. Alternatively, the nucleotide sequence is integrated into the host's genome. Generally, the latter is preferred to ensure stable expression.
[0153] The nucleic acid sequence can be codon optimized according to the selected host to achieve high expression in the host. For example, in certain embodiments, the acetoacetyl-CoA thiolase gene atoB derived from Escherichia coli is codon optimized for the codon preference of Serratia.
[0154] Nucleic acids can be prepared using a variety of conventional techniques and methods, including but not limited to direct extraction from cells and obtaining by synthesis.
[0155] The transcription level of nucleic acid in the host microorganism can be increased by a variety of methods, including but not limited to: (1) increasing the promoter strength of the nucleotide sequence encoding the enzyme; (2) dividing the operon into individual genes controlled by separate promoters; (3) increasing the copy number of the nucleotide sequence encoding the enzyme to achieve increased transcription level (for example, introducing additional copies of the nucleotide sequence encoding the enzyme into the genome of the host microorganism or using a high copy number plasmid to express the nucleotide sequence encoding the enzyme in the host microorganism.
[0156] The translation level of nucleic acids in host microorganisms can be improved by a variety of methods, including but not limited to: (1) modifying the ribosome binding site sequence; (2) optimizing the sequence between the ribosome binding site and the start codon; (3) improving the stability of mRNA.
[0157] The activity of MVA pathway enzymes in the host can be altered in a variety of ways, including but not limited to: (1) expressing a high k cat or lower K m (2) expressing enzymes that are not regulated by positive / negative feedback; (3) altering enzyme activity through site-directed or random mutagenesis.
[0158] In an embodiment of the present invention, the expression vector used includes, but is not limited to, pBBR1MCS-2, pBbA5c-RFP and pUCP18.
[0159] In an embodiment of the present invention, the promoter used in the expression vector is a constitutive promoter. One or more nucleic acid sequences are operably linked to the constitutive promoter.
[0160] In an embodiment of the present invention, suitable constitutive promoters for host cells include, but are not limited to, endogenous promoters of Serratia and Anderson promoters (BBa_J23100, BBa_J23112, and BBa_J23119, etc.).
[0161] The expression vector contains one or more selectable marker genes for screening and identifying host cells carrying the expression vector. Examples of suitable selectable markers for Serratia include, but are not limited to, ampicillin, kanamycin, chloramphenicol, streptomycin and spectinomycin resistance.
[0162] The expression vector can be introduced into the host cell using a variety of techniques, such as electroporation, which uses electric pulses to form temporary holes in the cell membrane, allowing substances such as nucleic acids to enter the cell through the holes.
[0163] After transformation, there are a number of ways to confirm that the plasmid has been introduced into the host cell. One method is to screen the transformed host cells using a resistance selectable marker gene and then perform PCR verification on a single colony using specific primers.
[0164] The enzyme activity in the pathway can be measured by a variety of methods known in the art. Usually the enzyme activity can be determined based on the consumption of the substrate or the production of the product. The reaction can be measured in vivo or in vitro. For example, the activity of HMG-CoA reductase can be measured in vitro by the consumption of NADH. HMG-CoA reductase generates mevalonate using HMG-CoA and NADH as substrates. NADH has an absorption peak at 340nm, and the activity of HMG-CoA reductase is detected by measuring the decrease in the absorbance of NADH at 340nm.
[0165] Table 1 Construction of plasmids
[0166]
[0167]
[0168]
[0169] Example 1
[0170] This example describes a method for preparing expression plasmids encoding enzymes of the MVA pathway from genes derived from Escherichia coli and Saccharomyces cerevisiae.
[0171] The expression plasmid pBBR1MCS-2-MevT was generated by inserting the MevT operon into the pBBR1MCS-2 vector. The MevT operon contains the atoB gene from Escherichia coli (GenBank Accession No.: NC_000913 REGION: 2326109..2327293) (encoding acetoacetyl-CoA thiolase), the ERG13 gene from Saccharomyces cerevisiae (GenBank Accession No.: NC_001145 REGION: complement (19060..20535)) (encoding HMG-CoA synthetase), and the truncated HMG1 gene from Saccharomyces cerevisiae (SEQ ID NO: 32) (encoding HMG-CoA reductase). The genes were directly synthesized into the KpnI and XhoI restriction enzyme sites of the pBBR1MCS-2 vector in the order of atoB, ERG13 and HMG1, and the ribosome binding sites BBa_J61100 (AAAGAGGGGACAA) and BBa_J61106 (AAAGATAGGAGAC) were introduced before ERG13 and HMG1, respectively, and the restriction enzyme site ApaI was introduced between BBa_J61100 and ERG13 to generate the expression plasmid pBBR1MCS-2-MevT.
[0172] The expression plasmid pBBR1MCS-2-MevT(co) was generated by inserting the MevT(co) operon into the pBBR1MCS-2 vector. The MevT(co) operon contains the atoB gene (SEQ ID NO:33) from Escherichia coli (encoding acetoacetyl-CoA thiolase), the ERG13 gene (SEQ ID NO:34) from Saccharomyces cerevisiae (encoding HMG-CoA synthetase), and the truncated HMG1 gene (SEQ ID NO:35) from Saccharomyces cerevisiae (encoding HMG-CoA reductase), all of which were codon-optimized for expression in Serratia. The codon-optimized genes were directly synthesized into the KpnI and XhoI restriction enzyme sites of the pBBR1MCS-2 vector in the order of atoB, ERG13 and HMG1, and the ribosome binding sites BBa_J61100 (AAAGAGGGGACAA) and BBa_J61106 (AAAGATAGGAGAC) were introduced before ERG13 and HMG1, respectively, and the restriction enzyme site ApaI was introduced between BBa_J61100 and ERG13 to generate the expression plasmid pBBR1MCS-2-MevT (co).
[0173] The expression plasmid pBbA5c-MBI was generated by inserting the MBI operon into the pBbA5c-RFP vector. The MBI operon contains the ERG12 gene from Saccharomyces cerevisiae (GenBank accession number: NC_001145 REGION: 684467..685798) (encoding mevalonate kinase), the ERG8 gene from Saccharomyces cerevisiae (GenBank accession number: NC_001145 REGION: 712316..713671) (encoding phosphomevalonate kinase), the MVD1 gene from Saccharomyces cerevisiae (GenBank accession number: NC_001146 REGION: 701895..703085) (encoding pyrophosphate mevalonate decarboxylase), and the idi gene from Escherichia coli (GenBank accession number: NC_000913 REGION:3033065..3033613) (encoding isopentenyl pyrophosphate isomerase), these four genes were directly synthesized into the EcoRI and BamHI restriction enzyme sites of the pBbA5c-RFP vector in the order of ERG12, ERG8, MVD1 and idi, and the ribosome binding sites BBa_J61109 (AAAGACTGGAGAC), BBa_J61112 (AAAGAGGTGACAT) and BBa_J61115 (AAAGAAGGGATAC) were introduced before ERG8, MVD1 and idi, respectively, to generate the expression plasmid pBbA5c-MBI.
[0174] Example 2
[0175] This example describes a method for preparing expression plasmids encoding enzymes of the MVA pathway from genes derived from Escherichia coli and Staphylococcus aureus.
[0176] The expression plasmid pBBR1MCS-2-MTSA is derived from the expression plasmid pBBR1MCS-2-MevT (co), and the EGR13 gene and HMG1 gene from Saccharomyces cerevisiae are replaced by the mvaS gene (SEQ ID NO: 36) (encoding HMG-CoA synthetase) and the mvaA gene (SEQ ID NO: 37) (encoding HMG-CoA reductase) from Staphylococcus aureus, respectively. These two genes are directly synthesized into the ApaI and XhoI restriction enzyme sites of the vector pBBR1MCS-2-MevT (co) in the order of mvaS and mvaA to generate the expression plasmid pBBR1MCS-2-MTSA.
[0177] Example 3
[0178] This example describes a method for preparing expression plasmids encoding enzymes of the MVA pathway from genes derived from Escherichia coli and Enterococcus faecalis.
[0179] The expression plasmid pBBR1MCS-2-MTEF is derived from the expression plasmid pBBR1MCS-2-MevT(co), and the EGR13 gene and HMG1 gene from Saccharomyces cerevisiae are replaced by the mvaS gene (SEQ ID NO:38) (encoding HMG-CoA synthetase) and mvaE gene (SEQ ID NO:39) (encoding HMG-CoA reductase) from Enterococcus faecalis, respectively. These two genes are directly synthesized into the ApaI and XhoI restriction enzyme sites of the vector pBBR1MCS-2-MevT(co) in the order of mvaS and mvaE, generating the expression plasmid pBBR1MCS-2-MTEF.
[0180] The expression plasmid pBBR1MCS-2-MTEF-MevB was generated by inserting the MevB operon into pBBR1MCS-2-MTEF. The MevB operon contains the ERG12 gene from Saccharomyces cerevisiae (GenBank accession number: NC_001145REGION:684467..685798) (encoding mevalonate kinase), the ERG8 gene from Saccharomyces cerevisiae (GenBank accession number: NC_001145REGION:712316..713671) (encoding phosphomevalonate kinase) and the MVD1 gene from Saccharomyces cerevisiae (GenBank accession number: NC_001146REGION:701895..703085) (encoding pyrophosphate mevalonate decarboxylase). These three genes were directly synthesized into the HindIII and EcoRI restriction enzyme sites of the pBBR1MCS-2-MTEF vector in the order of ERG12, ERG8 and MVD1. The lac UV5 promoter was introduced before ERG12, and the ribosome binding sites BBa_J61109 (AAAGACTGGAGAC) and BBa_J61112 (AAAGAGGTGACAT) were introduced before ERG8, MVD1 and idi, respectively, to generate the expression plasmid pBBR1MCS-2-MTEF-MevB.
[0181] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co) was generated by inserting the MBI operon and the truncated geranyl pyrophosphate synthase gene into pBBR1MCS-2-MTEF. The MBI operon contains the ERG12 gene from Saccharomyces cerevisiae (GenBank Accession No.: NC_001145 REGION: 684467..685798) (encoding mevalonate kinase), the ERG8 gene from Saccharomyces cerevisiae (GenBank Accession No.: NC_001145 REGION: 712316..713671) (encoding phosphomevalonate kinase), the MVD1 gene from Saccharomyces cerevisiae (GenBank Accession No.: NC_001146 REGION: 701895..703085) (encoding pyrophosphate mevalonate decarboxylase), and the idi gene from Escherichia coli (GenBank Accession No.: NC_000913 REGION:3033065..3033613) (encoding isopentenyl pyrophosphate isomerase), these four genes were directly synthesized into the HindIII and EcoRI restriction enzyme sites of the pBBR1MCS-2-MTEF vector in the order of ERG12, ERG8, MVD1 and idi. The lac UV5 promoter was introduced before ERG12, and the ribosome binding sites BBa_J61109 (AAAGACTGGAGAC), BBa_J61112 (AAAGAGGTGACAT) and BBa_J61115 (AAAGAAGGGATAC) were introduced before ERG8, MVD1 and idi, respectively. The geranyl pyrophosphate synthase gene trGPPS derived from the truncated Abies grandis was codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:40. The nucleotide sequence was inserted into the XbaI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF vector by synthesis, and the lac promoter was introduced before trGPPS and the NdeI restriction enzyme site was introduced after trGPPS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS (co).
[0182] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA was generated by inserting the MBI operon and ispA into pBBR1MCS-2-MTEF. The MBI operon contains the ERG12 gene from Saccharomyces cerevisiae (GenBank accession number: NC_001145 REGION: 684467..685798) (encoding mevalonate kinase), the ERG8 gene from Saccharomyces cerevisiae (GenBank accession number: NC_001145 REGION: 712316..713671) (encoding phosphomevalonate kinase), the MVD1 gene from Saccharomyces cerevisiae (GenBank accession number: NC_001146 REGION: 701895..703085) (encoding pyrophosphate mevalonate decarboxylase), and the idi gene from Escherichia coli (GenBank accession number: NC_000913 REGION:3033065..3033613) (encoding isopentenyl pyrophosphate isomerase), these four genes were directly synthesized into the HindIII and EcoRI restriction enzyme sites of the pBBR1MCS-2-MTEF vector in the order of ERG12, ERG8, MVD1 and idi. The lac UV5 promoter was introduced before ERG12, and the ribosome binding sites BBa_J61109 (AAAGACTGGAGAC), BBa_J61112 (AAAGAGGTGACAT) and BBa_J61115 (AAAGAAGGGATAC) were introduced before ERG8, MVD1 and idi, respectively. The ispA gene from Escherichia coli (GenBank accession number: NC_000913 REGION: complement(440202..441101)) (encoding farnesyl pyrophosphate synthase) was directly synthesized into the XbaI and SacI restriction sites of the pBBR1MCS-2-MTEF vector, and the lac promoter was introduced in front of ispA and the NdeI restriction site was introduced after ispA to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA.
[0183] Example 4
[0184] This example describes a method for preparing an expression plasmid encoding a terpene synthase.
[0185] The expression plasmid pUCP18-trGPPS(co)-ScLinS is generated by inserting the coding sequences of geranyl pyrophosphate synthase trGPPS and (R)-linalool synthase into the vector pUCP18. The geranyl pyrophosphate synthase gene trGPPS from truncated Abies grandis and the (R)-linalool synthase gene ScLinS from Streptomyces clavuligerus were codon-optimized for expression in Serratia, and the nucleotide sequences are shown in SEQ ID NO:40 and SEQ ID NO:41, respectively. The two genes were inserted into the HindIII and XbaI restriction enzyme sites of the pUCP18 vector by synthesis in the order of trGPPS and ScLinS, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) was introduced before ScLinS to generate the expression plasmid pUCP18-trGPPS(co)-ScLinS.
[0186] The expression plasmid pBBR1MCS-2-MTEF-MevB-IspS is produced by inserting the coding sequence of isoprene synthase into the vector pBBR1MCS-2-MTEF-MevB. The gene IspS of isoprene synthase is derived from Populus alba, and codons are optimized for expression in Serratia. The nucleotide sequence is shown in SEQ ID NO: 42. The nucleotide sequence is inserted into the XbaI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MevB vector by synthesis, and the lac promoter is introduced in front of IspS to produce the expression plasmid pBBR1MCS-2-MTEF-MevB-IspS.
[0187] The expression plasmid pBBR1MCS-2-MTEF-MevB-NudF is produced by inserting the coding sequence of isopentenol synthase into the vector pBBR1MCS-2-MTEF-MevB. The gene NudF of isopentenol synthase is derived from Bacillus subtilis, and codons are optimized for expression in Serratia. The nucleotide sequence is shown in SEQ ID NO:43. The nucleotide sequence is inserted into the XbaI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MevB vector by synthesis, and the lac promoter is introduced in front of NudF to produce the expression plasmid pBBR1MCS-2-MTEF-MevB-NudF.
[0188] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-ScCinS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene ScCinS for 1,8-cineole synthase is derived from Streptomyces clavuligerus, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:44. The nucleotide sequence is synthetically inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before ScCinS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-ScCinS.
[0189] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-ScLinS was derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene ScLinS for (R)-linalool synthase was derived from Streptomyces clavuligerus, codon-optimized for expression in Serratia marcescens, and the nucleotide sequence is shown in SEQ ID NO:41, which was synthetically inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) was introduced before ScLinS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-ScLinS.
[0190] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-PtPS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene PtPS for α-pinene synthase is derived from Pinus taeda, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:45. The nucleotide sequence is synthetically inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before PtPS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-PtPS.
[0191] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-AgPS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene AgPS for pinene synthase is derived from Abies grandis, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:46, which is synthetically inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before AgPS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-AgPS.
[0192] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-TvTPS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene TvTPS for γ-terpinene synthase is derived from thyme (Thymus vulgaris), codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:47. The nucleotide sequence is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before TvTPS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-TvTPS.
[0193] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-ObGES is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene ObGES for geraniol synthase is derived from Ocimum basilicum, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:48, which is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before ObGES to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-ObGES.
[0194] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-ClLS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene ClLS for (+)-limonene synthase is derived from lemon (Citrus limon), codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:49. The nucleotide sequence is synthetically inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before ClLS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-ClLS.
[0195] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-MsLS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene MsLS for (-)-limonene synthase is derived from peppermint (Mentha spicata), codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:50, which is synthetically inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before MsLS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-MsLS.
[0196] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-CsMS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene CsMS for myrcene synthase is derived from Cannabis sativa, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:51, which is inserted into the tNdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before CsMS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-CsMS.
[0197] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-AtOS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene AtOS for β-ocimene synthase is derived from Arabidopsis thaliana, codon-optimized for expression in Serratia marcescens, and the nucleotide sequence is shown in SEQ ID NO:52. The nucleotide sequence is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before AtOS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-AtOS.
[0198] The expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-SpSabS1 is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co). The gene SpSabS1 of sabinene synthase is derived from Salvia pomifera, codon-optimized for expression in Serratia marcescens, and the nucleotide sequence is shown in SEQ ID NO:53. The nucleotide sequence is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-trGPPS(co) vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before SpSabS1 to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-trGPPS(co)-SpSabS1.
[0199] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-CcBOS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA. The gene CcBOS for (-)-α-bisabolol synthase is derived from Cynara cardunculus, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:54, which is synthetically inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-ispA vector, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before CcBOS, generating the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-CcBOS.
[0200] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-PgpB is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA. The phosphatase gene PgpB is derived from Escherichia coli, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:55. The nucleotide sequence is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-ispA vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before PgpB to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-PgpB.
[0201] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-PsTPS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA. The gene PsTPS for longifolene synthase is derived from Pinus sylvestris, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:56, which is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-ispA vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before PsTPS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-PsTPS.
[0202] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-CnVS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA. The gene CnVS for valencene synthase is derived from Alaska yellow cedar (Callitropsisnootkatensis), codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:57. The nucleotide sequence is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-ispA vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before CnVS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-CnVS.
[0203] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-LsLTC2 was derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA. The gene LsLTC2 for germacrene A synthase was derived from lettuce (Lactuca sativa), codon-optimized for expression in Serratia marcescens, and the nucleotide sequence was shown in SEQ ID NO:58, which was synthetically inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-ispA vector, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) was introduced before LsLTC2, generating the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-LsLTC2.
[0204] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-AaFG is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA. The gene AaFG for acaciaene synthase is derived from Artemisia annua, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:59, which is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-ispA vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before AaFG to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-AaFG.
[0205] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-PcPTS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA. The gene PcPTS for patchouli alcohol synthase is derived from Pogostemon cablin, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:60. The nucleotide sequence is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-ispA vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before PcPTS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-PcPTS.
[0206] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-PSS is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA. The gene PSS for the paracyclic terpene synthase is derived from Streptomyces sp., codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:61. The nucleotide sequence is inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-ispA vector by synthesis, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before PSS to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-PSS.
[0207] The expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-SanSyn is derived from the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA. The gene SanSyn for α-santalene synthase is derived from Clausena lansium, codon-optimized for expression in Serratia, and the nucleotide sequence is shown in SEQ ID NO:62. The nucleotide sequence is synthetically inserted into the NdeI and SacI restriction enzyme sites of the pBBR1MCS-2-MTEF-MBI-ispA vector, and the ribosome binding site BBa_J61130 (AAAGAAACGACAT) is introduced before SanSyn to generate the expression plasmid pBBR1MCS-2-MTEF-MBI-ispA-SanSyn.
[0208] Example 5
[0209] This example describes the generation of Serratia into which an expression plasmid was introduced.
[0210] Serratia cells were transformed with one or more expression plasmids as described in Table 1. Taking the construction of strain S01 as an example, plasmid pBBR1MCS-2-MevT was introduced into Serratia marcescens HBQA7 to obtain strain S01.
[0211] Table 2 Construction of strains
[0212]
[0213]
[0214] Screen the Serratia with successful plasmid introduction on LB plates containing antibiotics. Inoculate a single colony into 3 mL of liquid LB medium containing antibiotics. All strains are cultured overnight at 30°C and 200 rpm. Take 500 μL of bacterial culture solution and place it in a sterilized bacterial tube containing 500 μL of 60% glycerol and store it at -80°C.
[0215] Example 6
[0216] This example demonstrates that HMGS and HMGR derived from Enterococcus faecalis are superior to HMGS and HMGR derived from Staphylococcus aureus and Saccharomyces cerevisiae.
[0217] The strains S01, S02, S03 and S04 constructed in Example 7 were streaked on LB solid medium. Single colonies of strains S01, S02, S03 and S04 were picked and cultured in 3 mL of liquid LB medium for 12 h, and inoculated into a 250 mL shake flask containing 50 mL of medium at a volume ratio of 2%. The medium used was 60 g·L -1 The MVA fermentation medium of glucose was cultured at 30°C and 120 rpm for 72 h. The MVA fermentation medium also contained the following substances: Na 2 HPO 4 12H 2 O, 17.1 g·L -1 ; KH 2 PO 4 , 3.0 g·L -1 ; NaCl, 3.0 g·L -1 NH 4 Cl, 1.0 g L -1 ; Yeast extract, 5.0 g·L -1 ; Citric acid, 0.2 g·L -1 ;MgSO4, 1.0 mM; CaCl 2 ,0.1mM; thiamine hydrochloride, 0.008g·L -1; D-(+) biotin, 0.008 g·L -1 ; Niacin, 0.008 g·L -1 ; Pyridoxine, 0.032 g·L -1 ; Trace metal solution, 1mL·L -1 The trace metal solution contains the following substances: NaCl, 10 g·L -1 ; Citric acid, 40 g·L -1 ; ZnSO 4 7H 2 O, 1.0 g L -1 ; MnSO 4 ·H 2 O, 30g·L -1 ;CuSO 4 ·5H 2 O, 0.1 g·L -1 ;H 3 BO 3 , 0.1 g·L -1 ;Na 2 MoO 4 ·2H 2 O, 0.1 g·L -1 ;FeSO 4 7H 2 O, 1.0 g L -1 ;CoCl 2 6H 2 O, 1.0 g L -1 . The OD value was measured at 600 nm using a spectrophotometer. The OD values of the fermentation broths of strains S01, S02, S03 and S04 were 10.61, 10.82, 10.20 and 10.09, respectively. The fermentation broth was centrifuged at 12000 rpm for 10 min, and the supernatant was used for the detection of mevalonic acid production. Mevalonic acid was detected by high performance liquid chromatography (HPLC). The mevalonic acid production of strains S01, S02, S03 and S04 was 20.63 g·L -1 , 21.82 g·L -1 , 23.50 g·L -1 and 24.01 g·L -1 Compared with strains S01, S02 and S03, strain S04 expressing HMGS and HMGR from E. cocci had higher mevalonic acid production, indicating that HMGS and HMGR from E. cocci were superior to those from Staphylococcus aureus and Saccharomyces cerevisiae.
[0218] Example 7
[0219] This example demonstrates that single plasmid expression is superior to multiple plasmid expression.
[0220] Strains S05 and S06 were streaked on LB solid medium. Single colonies of strains S05 and S06 were picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 2YT medium containing glucose. In order to collect linalool, dodecane (10% by volume) was added to the medium. Linalool will enter the dodecane covering the medium, and linalool in dodecane is detected by gas chromatography. Culture at 30°C and 120rpm for 72h. OD value was measured at 600nm using a spectrophotometer. Linalool in the dodecane layer was detected using gas chromatography. The OD values of strains S05 and S06 were 6.27 and 6.64, respectively, and the linalool yields were 9.21g·L -1 and 13.01 g·L -1 Compared with strain S05, strain S06 had a higher yield of linalool, indicating that single-plasmid expression was superior to multi-plasmid expression.
[0221] Example 8
[0222] This example demonstrates the superiority of Serratia marcescens HBQA7 over other Serratia hosts.
[0223] Strains S07, S08, S09, S10, S11, S12, S13, S14, S15, S16, S17, S18, S19, S20 and S21 were streaked on LB solid medium. Single colonies of strains S07, S08, S09, S10, S11, S12, S13, S14, S15, S16, S17, S18, S19, S20 and S21 were picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect linalool, dodecane (10% by volume) was added to the medium. Cultured for 72 hours at 30°C and 120rpm. The OD value was measured at 600nm using a spectrophotometer. Linalool in the dodecane layer was detected using gas chromatography. The OD values of strains S07, S08, S09, S10, S11, S12, S13, S14, S15, S16, S17, S18, S19, S20 and S21 were 5.86, 5.63, 6.05, 6.41, 5.91, 5.82, 6.06, 5.66, 5.90, 6.31, 5.72, 5.72, 6.26, 5.50 and 6.05, respectively. The linalool yields were 4.63 g·L -1 , 3.99 g·L -1 , 3.71 g·L -1 , 4.15 g·L -1 , 4.45 g·L -1 , 4.02 g·L -1 , 4.17 g·L -1 , 3.38 g·L -1 , 3.18 g·L -1 , 4.78 g·L -1 , 3.53 g·L -1 , 4.53 g·L -1 , 3.31 g·L -1 , 4.97 g·L -1 and 4.20 g·L -1 Compared with strains S07, S08, S09, S10, S11, S12, S13, S14, S15, S16, S17, S18, S19, S20, and S21, S06 had a higher linalool yield, indicating that Serratia marcescens HBQA7 is superior to other Serratia hosts.
[0224] Example 9
[0225] This example describes the production of isoprene in Serratia marcescens HBQA7.
[0226] Strain S22 was streaked on LB solid medium. A single colony of strain S22 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect isoprene, dodecane (10% by volume) was added to the medium. Cultured for 72 h at 30 °C and 120 rpm. The OD value was measured at 600 nm using a spectrophotometer. The isoprene in the dodecane layer was detected using gas chromatography. The OD value of strain S22 was 5.72, and the isoprene production was 12.95 g·L -1 .
[0227] Example 10
[0228] This example describes the production of prenol in Serratia marcescens HBQA7.
[0229] Strain S23 was streaked on LB solid medium. A single colony of strain S23 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. In order to collect isopentenol, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. The isopentenol in the dodecane layer was detected using gas chromatography. The OD value of strain S23 was 5.68, and the isopentenol production was 11.79 g·L -1 .
[0230] Embodiment 11
[0231] This example describes the production of 1,8-cineole in Serratia marcescens HBQA7.
[0232] Strain S24 was streaked on LB solid medium. A single colony of strain S24 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect 1,8-cineole, dodecane (10% by volume) was added to the medium. Cultured for 72 hours at 30°C and 120rpm. The OD value was measured at 600nm using a spectrophotometer. 1,8-cineole in the dodecane layer was detected using gas chromatography. The OD value of strain S24 was 5.98, and the 1,8-cineole yield was 11.67g·L -1 .
[0233] Example 12
[0234] This example describes the production of α-pinene in Serratia marcescens HBQA7.
[0235] Strain S25 was streaked on LB solid medium. A single colony of strain S25 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. In order to collect α-pinene, dodecane (10% by volume) was added to the medium. Cultured for 72 h at 30 ° C and 120 rpm. The OD value was measured at 600 nm using a spectrophotometer. α-pinene in the dodecane layer was detected using gas chromatography. The OD value of strain S25 was 6.27, and the α-pinene yield was 10.70 g·L -1 .
[0236] Example 13
[0237] This example describes the production of pinene in Serratia marcescens HBQA7.
[0238] Strain S26 was streaked on LB solid medium. A single colony of strain S26 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect pinene, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. The pinene in the dodecane layer was detected using gas chromatography. The OD value of strain S26 was 5.91, and the pinene yield was 10.15 g·L -1 .
[0239] Embodiment 14
[0240] This example describes the production of gamma-terpinene in Serratia marcescens HBQA7.
[0241] Strain S27 was streaked on LB solid medium. A single colony of strain S27 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. In order to collect γ-terpinene, dodecane (10% by volume) was added to the medium. Cultured for 72 hours at 30°C and 120rpm. The OD value was measured at 600nm using a spectrophotometer. The γ-terpinene in the dodecane layer was detected using gas chromatography. The OD value of strain S27 was 5.98, and the γ-terpinene production was 11.61g·L -1 .
[0242] Embodiment 15
[0243] This example describes the production of geraniol in Serratia marcescens HBQA7.
[0244] Strain S28 was streaked on LB solid medium. A single colony of strain S28 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect geraniol, dodecane (10% by volume) was added to the medium. Cultured for 72 hours at 30°C and 120rpm. The OD value was measured at 600nm using a spectrophotometer. The geraniol in the dodecane layer was detected using gas chromatography. The OD value of strain S28 was 6.04, and the geraniol yield was 11.88g·L -1 .
[0245] Example 16
[0246] This example describes the production of (+)-limonene in Serratia marcescens HBQA7.
[0247] Strain S29 was streaked on LB solid medium. A single colony of strain S29 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. In order to collect (+)-limonene, dodecane (10% by volume) was added to the medium. Cultured for 72 hours at 30°C and 120rpm. The OD value was measured at 600nm using a spectrophotometer. (+)-limonene in the dodecane layer was detected using gas chromatography. The OD value of strain S29 was 5.71, and the (+)-limonene production was 10.89g·L -1 .
[0248] Embodiment 17
[0249] This example describes the production of (-)-limonene in Serratia marcescens HBQA7.
[0250] Strain S30 was streaked on LB solid medium. A single colony of strain S30 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect (-)-limonene, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. (-)-limonene in the dodecane layer was detected using gas chromatography. The OD value of strain S30 was 6.23, and the (-)-limonene production was 11.04 g·L -1 .
[0251] Embodiment 18
[0252] This example describes the production of myrcene in Serratia marcescens HBQA7.
[0253] Strain S31 was streaked on LB solid medium. A single colony of strain S31 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. To collect myrcene, dodecane (10% by volume) was added to the medium. The culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. Myrcene in the dodecane layer was detected using gas chromatography. The OD value of strain S31 was 6.45, and the myrcene yield was 11.36 g·L -1 .
[0254] Embodiment 19
[0255] This example describes the production of β-ocimene in Serratia marcescens HBQA7.
[0256] Strain S32 was streaked on LB solid medium. A single colony of strain S32 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect β-ocimene, dodecane (10% by volume) was added to the medium. Cultured for 72 hours at 30°C and 120rpm. The OD value was measured at 600nm using a spectrophotometer. β-ocimene in the dodecane layer was detected using gas chromatography. The OD value of strain S32 was 5.80, and the β-ocimene yield was 11.86g·L -1 .
[0257] Embodiment 20
[0258] This example describes the production of sabinene in Serratia marcescens HBQA7.
[0259] Strain S33 was streaked on LB solid medium. A single colony of strain S33 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. To collect sabinene, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. The sabinene in the dodecane layer was detected using gas chromatography. The OD value of strain S33 was 5.69, and the sabinene yield was 10.43 g·L -1 .
[0260] Embodiment 21
[0261] This example describes the production of (-)-α-bisabolol in Serratia marcescens HBQA7.
[0262] Strain S34 was streaked on LB solid medium. A single colony of strain S34 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect (-)-α-bisabolol, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. The (-)-α-bisabolol in the dodecane layer was detected using gas chromatography. The OD value of strain S34 was 5.72, and the (-)-α-bisabolol yield was 10.08 g·L -1 .
[0263] Embodiment 22
[0264] This example describes the production of farnesol in Serratia marcescens HBQA7.
[0265] Strain S35 was streaked on LB solid medium. A single colony of strain S35 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. In order to collect farnesol, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. Farnesol in the dodecane layer was detected using gas chromatography. The OD value of strain S35 was 6.07, and the (-)-α-bisabolol production was 10.33 g·L -1 .
[0266] Embodiment 23
[0267] This example describes the production of longifolene in Serratia marcescens HBQA7.
[0268] Strain S36 was streaked on LB solid medium. A single colony of strain S36 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect longifolene, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. The longifolene in the dodecane layer was detected using gas chromatography. The OD value of strain S36 was 6.16, and the longifolene production was 10.50 g·L -1 .
[0269] Embodiment 24
[0270] This example describes the production of valencene in Serratia marcescens HBQA7.
[0271] Strain S37 was streaked on LB solid medium. A single colony of strain S37 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. In order to collect valencene, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. Valencene in the dodecane layer was detected using gas chromatography. The OD value of strain S37 was 6.22, and the valencene production was 10.10 g·L -1 .
[0272] Embodiment 25
[0273] This example describes the production of β-elemene in Serratia marcescens HBQA7.
[0274] Strain S38 was streaked on LB solid medium. A single colony of strain S38 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect β-elemene, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. β-elemene in the dodecane layer was detected using gas chromatography. The OD value of strain S38 was 5.75, and the β-elemene yield was 10.72 g·L -1 .
[0275] Embodiment 26
[0276] This example describes the production of farnesene in Serratia marcescens HBQA7.
[0277] Strain S39 was streaked on LB solid medium. A single colony of strain S39 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. To collect farnesene, dodecane (10% by volume) was added to the medium. The culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. Farnesene in the dodecane layer was detected using gas chromatography. The OD value of strain S39 was 5.83, and the farnesene production was 10.61 g·L -1 .
[0278] Embodiment 27
[0279] This example describes the production of patchouli alcohol in Serratia marcescens HBQA7.
[0280] Strain S40 was streaked on LB solid medium. A single colony of strain S40 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect patchouli alcohol, dodecane (10% by volume) was added to the medium. Cultured for 72 h at 30 °C and 120 rpm. The OD value was measured at 600 nm using a spectrophotometer. The patchouli alcohol in the dodecane layer was detected using gas chromatography. The OD value of strain S40 was 5.56, and the patchouli alcohol yield was 10.38 g·L -1 .
[0281] Embodiment 28
[0282] This example describes the production of paracyclic terpenes in Serratia marcescens HBQA7.
[0283] Strain S41 was streaked on LB solid medium. A single colony of strain S41 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1 In 2YT medium containing glucose. In order to collect para-terpenes, dodecane (10% by volume) was added to the medium. Culture was carried out at 30°C and 120 rpm for 72 h. The OD value was measured at 600 nm using a spectrophotometer. Para-terpenes in the dodecane layer were detected using gas chromatography. The OD value of strain S41 was 5.92, and the para-terpene yield was 10.26 g·L -1 .
[0284] Embodiment 29
[0285] This example describes the production of α-santalene in Serratia marcescens HBQA7.
[0286] Strain S42 was streaked on LB solid medium. A single colony of strain S42 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ) and cultured overnight at 30°C and 200 rpm. Then, 50 mL of freshly added 60 g·L -1In 2YT medium containing glucose. In order to collect α-santalene, dodecane (10% by volume) was added to the medium. Cultured for 72 hours at 30°C and 120 rpm. The OD value was measured at 600 nm using a spectrophotometer. α-santalene in the dodecane layer was detected using gas chromatography. The OD value of strain S42 was 5.67, and the α-santalene yield was 11.40 g·L -1 .
[0287] Embodiment 30
[0288] The strain S06 was cultured in a 30L fermenter. The strain S06 was streaked on LB solid medium. A single colony of the strain S06 was picked and inoculated into 3 mL of 2YT medium (peptone, 16.0 g L -1 ; NaCl, 5.0 g·L -1 ; Yeast extract, 10.0 g·L -1 ), cultured at 30°C, 200rpm for 12h to obtain the first-level seed solution. The first-level seed solution was transferred to a 500mL shake flask containing 100mL 2YT medium at a volume ratio of 2% inoculation, and cultured under the same conditions for 12h to obtain the second-level seed solution. Then the second-level seed solution was transferred to a 2.5L fermenter containing 1L 2YT medium at a volume ratio of 5% inoculation to obtain the third-level seed solution. Finally, a 30L fermenter was used for culture, with an initial culture medium of 20L and an initial glucose concentration of 60g·L -1 , the initial pH was set to 7.0, the culture temperature was 30°C, the initial speed was 200rpm, the ventilation volume was 1vvm, and the dissolved oxygen (DO) in the tank was calibrated to 100%. The seed liquid was inoculated into the fermenter at a volume ratio of 5% (OD value was 23.54). In order to control the dissolved oxygen in the fermenter to be not less than 30%, the dissolved oxygen and the speed needed to be coupled during the entire fermentation process. Dissolved oxygen rebound occurred when the batch fermentation was carried out for about 8 hours. At this time, the carbon source in the initial culture medium was basically exhausted, and feeding was started in the form of dissolved oxygen linkage flow addition. Feeding was carried out when the dissolved oxygen was greater than 80%, and feeding was stopped when the dissolved oxygen dropped to less than 60%. During the entire fermentation process, 25% ammonia water was added to adjust the pH to maintain the pH of the fermentation liquid in the tank at around 7.0. The fermentation time was 180 hours, and the extractant was 10% dodecane. The fermentation medium contains the following substances: Na 2 HPO 4 12H 2 O, 17.1 g·L -1 ; KH 2 PO 4 , 3.0 g·L -1 ; NaCl, 5.0 g·L -1 NH 4 Cl, 1.0 g L-1 ; Yeast extract, 10.0 g·L -1 ; Citric acid, 0.2 g·L -1 ;MgSO4, 1.0 mM; CaCl 2 ,0.1mM; thiamine hydrochloride, 0.008g·L -1 ; D-(+) biotin, 0.008 g·L -1 ; Niacin, 0.008 g·L -1 ; Pyridoxine, 0.032 g·L -1 ; Trace metal solution 1mL·L -1 The trace metal solution contains the following substances: NaCl, 10 g·L -1 ; Citric acid, 40 g·L -1 ; ZnSO 4 7H 2 O, 1.0 g L -1 ; MnSO 4 ·H 2 O, 30g·L -1 ;CuSO 4 ·5H 2 O, 0.1 g·L -1 ;H 3 BO 3 , 0.1 g·L -1 ;Na 2 MoO 4 ·2H 2 O, 0.1 g·L -1 ;FeSO 4 7H 2 O, 1.0 g L -1 ;CoCl 2 6H 2 O, 1.0 g L -1 Feed medium: glucose, 600 g·L -1 ; KH 2 PO 4 , 9g·L -1 ;MgSO4, 2.5 g·L -1 ; K 2 SO4, 3.5 g·L -1 ;Na 2 SO 4 , 0.28 g·L -1 ; Thiamine hydrochloride, 0.012 g·L -1 ; D-(+) biotin, 0.012 g·L -1 ; Niacin, 0.012 g·L -1 ; Pyridoxine, 0.012 g·L -1; p-Aminobenzoic acid, 0.012 g·L -1 ; Trace metal solution 10mL·L -1 Linalool in the dodecane layer was detected by gas chromatography. The final linalool yield of strain S06 with an OD value of 84.93 was 40.72 g·L -1 .
[0289] Although the present invention has been disclosed as above in the form of a preferred embodiment, it is not intended to limit the present invention. Anyone familiar with this technology can make various changes and modifications without departing from the spirit and scope of the present invention. Therefore, the scope of protection of the present invention should be based on the definition of the claims.
Claims
1. An engineered Serratia bacterium, characterized in that: Using Serratia marcescens HBQA7 as the chassis cell, acetoacetyl-CoA thiolase, HMG-CoA synthetase, HMG-CoA reductase, mevalonate kinase, phosphomevalonate kinase and pyrophosphomevalonate decarboxylase were expressed; The deposit number of the Serratia HBQA7 is CCTCC NO: M 2023184.
2. The engineered Serratia bacteria according to claim 1, characterized in that Also expresses any one or combination of the following enzymes: (1) Isopentenyl pyrophosphate isomerase, geranyl pyrophosphate synthetase, and any one of the following enzymes: (R)-linalool synthase, 1,8-cineole synthase, α-pinene synthase, pinene synthase, γ-terpinene synthase, geraniol synthase, (+)-limonene synthase, (-)-limonene synthase, myrcene synthase, β-ocimene synthase or sabinene synthase; (2) Isopentenyl pyrophosphate isomerase, farnesyl pyrophosphate synthetase, and any of the following enzymes: (-)-α-bisabolol synthase, phosphatase, longifolene synthase, valencene synthase, germacrene A synthase, farnesene synthase, patchouliol synthase, terpenoid synthase or α-santalene synthase; (3) Isoprene synthase or isopentenol synthase.
3. The engineered Serratia bacteria according to claim 1 or 2, characterized in that The amino acid sequence encoding the acetoacetyl-CoA thiolase is shown in SEQ ID No: 1, the amino acid sequence of the HMG-CoA synthetase is shown in SEQ ID No: 2, the amino acid sequence of the HMG-CoA reductase is shown in SEQ ID No: 3, the amino acid sequence of the mevalonate kinase is shown in SEQ ID No: 4, the amino acid sequence of the phosphomevalonate kinase is shown in SEQ ID No: 5, the amino acid sequence of the pyrophosphate mevalonate decarboxylase is shown in SEQ ID No: 6, the amino acid sequence of the isopentenyl pyrophosphate isomerase is shown in SEQ ID No: 7, the amino acid sequence of the geranyl pyrophosphate synthetase is shown in SEQ ID No: 8, the amino acid sequence of the (R)-linalool synthase is shown in SEQ ID No: 9, the amino acid sequence of the 1,8-cineole synthase is shown in SEQ ID No: 10, the amino acid sequence of the α-pinene synthase is shown in SEQ ID No: 11, the amino acid sequence of the pinene synthase is shown in SEQ ID No:
12. No. 12, the amino acid sequence of the γ-terpinene synthase is shown in SEQ ID No. 13, the amino acid sequence of the geraniol synthase is shown in SEQ ID No. 14, the amino acid sequence of the (+)-limonene synthase is shown in SEQ ID No. 15, the amino acid sequence of the (-)-limonene synthase is shown in SEQ ID No. 16, the amino acid sequence of the myrcene synthase is shown in SEQ ID No. 17, the amino acid sequence of the β-ocimene synthase is shown in SEQ ID No. 18, the amino acid sequence of the sabinene synthase is shown in SEQ ID No. 19, the amino acid sequence of the (-)-α-bisabolol synthase is shown in SEQ ID No. 20, the amino acid sequence of the farnesyl pyrophosphate synthase is shown in SEQ ID No. 21, the amino acid sequence of the phosphatase is shown in SEQ ID No. 22, the amino acid sequence of the longifolene synthase is shown in SEQ ID No. 23, the amino acid sequence of the valencene synthase is shown in SEQ ID No. 24, the germacrene The amino acid sequence of the A synthase is shown in SEQ ID No: 25, the amino acid sequence of the farnesene synthase is shown in SEQ ID No: 26, the amino acid sequence of the patchouli alcohol synthase is shown in SEQ ID No: 27, the amino acid sequence of the cyclopentene synthase is shown in SEQ ID No: 28, the amino acid sequence of the α-santalene synthase is shown in SEQ ID No: 29, the amino acid sequence of the isoprene synthase is shown in SEQ ID No: 30, and the amino acid sequence of the isopentenol synthase is shown in SEQ ID No:
31.
4. The engineered Serratia bacteria according to claim 3, characterized in that The expression vector used includes, but is not limited to, pBBR1MCS-2, pBbA5c-RFP or pUCP18.
5. A method for producing terpenoid compounds using the engineered Serratia bacteria according to any one of claims 1 to 4, characterized in that: The engineered Serratia bacteria are inoculated into a fermentation medium and fermented at 30° C. and 200 rpm for at least 72 hours.
6. The method according to claim 5, characterized in that The fermentation medium comprises glucose, Na2HPO4·12H2O, KH2PO4, NaCl, NH4Cl, yeast extract, citric acid, MgSO4, CaCl2, thiamine hydrochloride, D-(+) biotin, nicotinic acid, pyridoxine, and trace metals; The trace metals include Na + 、Zn 2+ , Mn 2+ , Cu 2+ , B 3+ 、Mo 6+ , Fe 2+ 、Co 2+ .
7. The method according to claim 6, characterized in that Feeding is also carried out during the fermentation process. The culture medium used for feeding includes glucose, KH2PO4, MgSO4, K2SO4, Na2SO4, thiamine hydrochloride, D-(+) biotin, nicotinic acid, pyridoxine, p-aminobenzoic acid and trace metals.
8. The method according to claim 7, characterized in that The pH of the fermentation liquid was adjusted to 6-8 with ammonia water.
9. The method according to any one of claims 5 to 8, characterized in that: Dodecane was added to the culture medium.
10. Use of the engineered Serratia bacteria according to any one of claims 1 to 4 in the production of terpenoid compounds.
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