IL-4 Derived Polyethylene Fragments for Use in the Treatment of Diabetic Nephropathia

Description

Technical field

[0001] The present disclosure relates to peptide fragments derived from IL-4 for use in the treatment of diabetic nephropathy. In particular, the present disclosure relates to peptides comprising one or more fragment(s) of IL-4 having the amino acid sequence of SEQ ID NO:1 or a variant thereof for use in the treatment of diabetic nephropathy.Background

[0002] Diabetic nephropathy has historically not been considered as a low-grade inflammation (i.e. innate inflammatory disease) as metabolic and haemodynamic factors have been thought to be the main causes of renal injuries. However, recent studies support a role for the innate immune system in both the development and progression of diabetic nephropathy. The progressive non-infectious inflammation involves glomerular and tubular cells resulting in a gradual loss of kidney function. The blood glucose and blood pressure should be kept as normal as possible to delay a loss of kidney function. However, no specific treatment of the innate inflammation has been developed, and the declining glomerular filtration and tubular function do not stop even with adequate control of blood glucose and blood pressure. At the end stage renal failure, the treatment will be chronic dialysis and, in some cases, kidney transplantation. Hence, interventions that prevent or halt the predestined inflammatory induced decline in all functions of nephrons are needed.

[0003] Patients are diagnosed with diabetic nephropathy by measuring the biomarker albumin in urine. Urine albumin is often measured in spot urine samples and corrected for creatinine in the same urine sample (ACR mg / g). The ACR is divided into three groups; normo-albuminuria (ACR < 30 mg / g), micro-albuminuria (ACR > 30 mg / g and < 300 mg / g) and macro-albuminuria (ACR> 300 mg / g). There is clinical evidence that shows that the higher the ACR, the more advanced the kidney damage.

[0004] Urine albumin and Kidney Injury Molecule-1 (KIM-1) are both strong biomarkers of kidney innate inflammation, and human renal biopsies have confirmed the presence of inflammatory cells in both glomeruli, the tubuli, and the interstitium at all stages of diabetic nephropathy.

[0005] Human interleukin-4 (IL-4) is an anti-inflammatory cytokine with the amino acid sequence (including signal peptide i.e. amino acid AA 1-24 ): MGLTSQLLPP LFFLLACAGN FVHGHKCDIT LQEIIKTLNS LTEQKTLCTE LTVTDIFAAS KNTTEKETFC RAATVLRQFY SHHEKDTRCL GATAQQFHRH KQLIRFLKRL DRNLWGLAGL NSCPVKEANQ STLENFLERL KTIMREKYSK CSS (UniProtKB - P05112; SEQ ID NO:3).

[0006] Mature IL-4 has 129 amino acid residues and contains three intramolecular disulfide bonds (Cys3-Cys127; Cys46-Cys99; Cys24-Cys65) with the amino acid sequence: HKCDITLQEI IKTLNSLTEQ KTLCTELTVT DIFAASKNTT EKETFCRAAT VLRQFYSHHE KDTRCLGATA QQFHRHKQLI RFLKRLDRNL WGLAGLNSCP VKEANQSTLE NFLERLKTIM REKYSKCSS (SEQ ID NO:4).

[0007] Like other cytokines, IL-4 exerts its biological activity by binding to receptors on the cell surface. Two receptor types for IL-4 are known and denoted type I IL-4R and type II IL-4R. The type I IL-4R is composed of two components; the IL-4Rα chain and the IL-2Rγ (γ c ) chain, whereas the type II IL-4R is composed of IL-4Rα and the IL-13α1 chain. IL-4 has many biological roles, including the stimulation of activated B cell and T cell proliferation, and the differentiation of B cells into plasma cells. The presence of IL-4 in extravascular tissues promotes alternative activation of macrophages into M2 cells and inhibits classical activation of macrophages into M1 cells resulting in a diminution of pathological inflammation. IL-4 is mainly secreted by CD4+ T-cells (Th2 cells) which control the concert of specific cytokine inhibitors and soluble cytokine receptors to regulate the human immune response and serve a critical role in the pathogenesis of acute and chronic inflammation by maintaining a proper balance between pro- and anti-inflammatory activities. Thus, modulation of IL-4 signaling has been heavily investigated in autoimmune and inflammatory diseases.

[0008] Small peptide fragments derived from IL-4, acting as IL-4 mimetics, have previously shown to inhibit TNF-α release from macrophages and to induce a neuritogenic response from primary neurons (see WO2010 / 054667). One such example is the peptide having the amino acid sequence AQFHRHKQLIRFLKRA (SEQ ID NO:1). This peptide is capable of binding to the IL-4 receptors and inhibiting macrophage activation, thereby preventing the onset of inflammatory responses, and has therefore been proposed to be useful in a number of inflammatory and autoimmune diseases, such as rheumatoid arthritis, Multiple sclerosis, Alzheimer's disease, Parkinson's disease, and Huntington's disease.Summary

[0009] The present disclosure relates to the finding that ReninAAV UNx db / db mice administered a compound comprising a peptide fragment of SEQ ID NO:1 (i.e. the treatment group) are able to significantly reduce urinary albumin corrected for creatinine (ACR) and to reduce kidney-injuring molecule corrected for creatinine (KIM-1 / CR) (see Figs. 2 and 3). Urine albumin and KIM-1 are both biomarkers of kidney innate inflammation as seen in various diseases which involve the kidneys, including diabetic nephropathy.

[0010] Thus, small peptide fragments derived from IL-4 and acting as IL-4 mimetics may hold promising potential as a new generation of drugs for the treatment of diabetic nephropathy, as the peptide of SEQ ID NO:1 has been shown to be a high affinity partial agonist on type I IL-4R and an antagonist on type II IL-4R (Klementiv 2013). The invention is set forth in the claims.Definitions and Abbreviations

[0011] ACR: Albumin corrected for creatinine IL-4: Interleukin-4 KIM-1: Kidney Injury Molecule-1 KIM-1 / CR: KIM-1 corrected for creatinine ReninAAV UNx mice: Renin AAV uninephrectomized db / db mice

[0012] "Diabetic nephropathy" is a type of progressive kidney disease that may occur in individuals with diabetes mellitus. It affects individuals with type 1 and type 2 diabetes. The risk of diabetic nephropathy increases with the duration of diabetes mellitus and other risk factors like high blood pressure and a family history of kidney disease.

[0013] The term "individual" refers to vertebrates, particular members of the mammalian species, preferably primates, most preferably humans. As used herein, 'subject' and 'individual' may be used interchangeably.

[0014] An "individual in need thereof" refers to an individual who may benefit from the present disclosure. In one embodiment, the individual in need thereof is a diseased individual, in particular an individual with diabetic nephropathy and / or with diabetes mellitus, type 1 or type 2.

[0015] The amino acids disclosed herein are natural amino acids (L-amino acids) unless otherwise stated.

[0016] An "effective amount" of a peptide can be administered in one administration, or through multiple administrations of an amount that totals an effective amount, for instance within a 24-hour period. It can be determined using standard clinical procedures for determining appropriate amounts and timing of administration. It is understood that the "effective amount" can be the result of empirical and / or individualized (case-by-case) determination on the part of the treating health care professional and / or individual.

[0017] In the present context when the disclosure refers to a peptide fragment, wherein a number of contiguous amino acid residues are derived from the amino acid region, e.g., AA 68 -AA 97 of interleukin-4 (SEQ ID NO:4), it should be understood as a small stretch of amino acids (i.e. a contiguous sequence) selected from the respective region of interleukin-4 (SEQ ID NO:4). As a non-limiting example, e.g., a peptide fragment comprising 16 contiguous amino acid residues derived from the amino acid region AA 68 -AA 89 of interleukin-4 (SEQ ID NO:4) can be obtained from the contiguous sequence highlighted in bold below.

[0018] Thus, 16 contiguous amino acid residues derived from the amino acid region AA 68 -AA 89 of interleukin-4 (SEQ ID NO:4) include the fragments / sequences ATAQQFHRHKQLIRFL; TAQQFHRHKQLIRFLK; AQQFHRHKQLIRFLKR, QQFHRHKQLIRFLKRL, QFHRHKQLIRFLKRLD, FHRHKQLIRFLKRLDR, HRHKQLI RFLKRLDRN, and RHKQLI RFLKRLDRNL. The peptide is a variant of the fragments / sequences derived from interleukin-4 (SEQ ID NO:4). As an example, AQFHRHKQLIRFLKRA (SEQ ID NO:1) is a variant of the fragment / sequence QQFHRHKQLIRFLKRL, wherein the terminal amino acids Q and L have been substituted with A (i.e. AQFHRHKQLIRFLKRA (SEQ ID NO:1) has two amino acid substitutions). The peptide below of Formula (I) comprises two peptide fragments of each 16 contiguous amino acids that are linked via a linker at their C-terminal.

[0019] The peptide fragment(s) may also be lipidated to alter the pharmacokinetic properties of the peptides.

[0020] The terms "treating", "treatment" and "therapy" as used herein refer equally to curative therapy, prophylactic, preventative, or ameliorating therapy. For purposes of this disclosure, beneficial or desired clinical results include, but are not limited to, alleviation of symptoms, diminishment of extent of disease, stabilized (i.e., not worsened) condition, delay or slowing of progression or worsening of condition / symptoms, amelioration or palliation of the condition or symptoms, and remission (whether partial or total), whether detectable or undetectable.

[0021] The term "covalently linked" should be understood as at least two peptides / fragments according to the disclosure covalently linked to each other through a linker or spacer. The covalently linked peptides have the same sequence. Various type of linkers (spacers) may be used to link the peptides together, e.g. those commonly known in the art for peptide dendrimers, fusion peptides / proteins, or hybrid peptides. E.g. the linker (spacer) may be a peptide linker, e.g. lysine-beta-alanine as illustrated herein, a single amino acid such as lysine, or a small stretch of amino acids (see e.g. Adv Drug Deliv Rev. 2013 Oct 15; 65(10): 1357-1369). The linker may also be a non-peptide linker, e.g. PEG chain or a diamine such as ethylene diamine. The skilled person will appreciate that the linker (spacer) used may be changed to other linkers (spacers) without departing from the inventive concept. The peptides / fragments are covalently linked via their C-terminal. Most preferably, the two peptides / fragments are linked by a lysine as illustrated herein. The beta-alanine of the lysine linker part merely acts as a spacer between the Rink linker used in the SPPS to reduce steric hindrance during synthesis. The beta-alanine part may therefore be substituted with other common spacers used in the art of SPPS. Various branched dendrimers based on lysine may be obtained as e.g. described in (Proc. Natl. Acad. Sci. USA, Vol 85, pp. 5409-5413, August 1988). The dimer disclosed herein was found to perform better than the monomer.

[0022] The peptide sequences of the present disclosure may be prepared by conventional synthetic methods commonly used in the art, such as solid phase peptide synthesis (SPPS) using coupling reagents.Brief description of the figures

[0023] Figs. 1A and 1B show the crystal structure of IL-4 (PDB identifier: 1CYL) with the amino acid residues indicated for the region AA 71 -AA 86 which forms part of the α-helix C (AA 71 -AA 94 ). Fig. 2 shows the effect of lowering ACR (mg / g) of Compound A in the treatment versus the vehicle group. Fig. 3 shows the effect of KIM-1 / CR (pg / g) of Compound A in the treatment versus the vehicle group. Detailed description

[0024] The present disclosure relates to the surprising finding that small peptide fragments derived from IL-4, more particularly the α-helix C of IL-4, are IL-4R type I agonists, and are capable of decreasing ACR and KIM-I in ReninAAV UNx db / db mice.

[0025] Mature IL-4 has 129 amino acid residues and contains three intramolecular disulfide bonds (Cys3-Cys127; Cys46-Cys99; Cys24-Cys65). The peptide used in the experimental section herein has the amino acid sequence of AQFHRHKQLIRFLKRA (SEQ ID NO: 1) (i.e. a first fragment) covalently linked to another peptide having the amino acid sequence of AQFHRHKQLIRFLKRA (SEQ ID NO: 1) (i.e. a second fragment) through a linker (spacer) (i.e. lysine-beta-alanine). The peptide of SEQ ID NO: 1 is a variant of the peptide fragment derived from the amino acids AA 71 -AA 86 of SEQ ID NO:4 (IL-4 without signal sequence) (highlighted in bold below).

[0026] As can be seen from the alignment of SEQ ID NO:1 with the amino acids AA 71 -AA 86 of SEQ ID NO:4, SEQ ID NO:1 is a variant of the peptide fragment derived from this region having two amino acid substitutions (highlighted in bold). QQFHRHKQLIRFLKRL AA 71 -AA 86 of IL-4 (SEQ ID NO:4) A QFHRHKQLIRFLKRA (SEQ ID NO: 1).

[0027] The region AA 71 -AA 86 of SEQ ID NO:4 forms part of the α-helix C (AA 71 -AA 94 ) of IL-4 as shown in the crystal structure in Figs. 1A / B (PDB identifier: 1CYL). This α-helix C interacts with the ectodomain part of IL-4 Rα1 and therefore, peptide fragments derived from the α-helix C (AA 71 -AA 94 ) are likely to possess similar binding characteristics and pharmacology as SEQ ID NO:1. In order words, peptide fragments derived from the region at or in close proximity to AA 71 -AA 94 , preferably AA 71 -AA 86 of SEQ ID NO:4, are suitable for use in the treatment of diabetic nephropathy.

[0028] The peptides according to the present invention may have a free amine (-NH 2 ), be N-acylated (-NHCOR), N-methylated (-NHCH 3 or -N(CH 3 ) 2 ) or deaminated at the N-terminal. The peptides may also be lipidated, e.g. at the N-terminal and / or at one or more lysine residue(s), in order to alter the PK properties of the peptides. Thus, in an embodiment, the N-terminal amino acid comprises a free amino-group ("NH 2 "). In another embodiment, the N-terminal amino acid is the acetylated derivative (COCH 3 ).

[0029] The peptides according to the disclosure are agonists on type I IL-4R and preferably antagonists on type II IL-4R. The agonists may be either super agonists, full agonists, or partial agonists.

[0030] Peptides according to the present invention are covalently linked to form a dimer by covalently connecting the peptides through various linkers (spacers), such as those commonly used in the art for fusion peptides or proteins. The peptides are linked via the C-terminal.

[0031] Thus, the present disclosure relates to a peptide or a pharmaceutically acceptable salt thereof, wherein said peptide comprises two covalently linked peptide fragments derived from the α-helix C of IL-4, linked via the C-terminal as illustrated herein.

[0032] In a first aspect, the present invention relates to a peptide or a pharmaceutically acceptable salt thereof for use in the treatment of diabetic nephropathy, wherein the peptide is a dimer comprising two fragments, each fragment consisting of the amino acid sequence AQFHRHKQLIRFLKRA (SEQ ID NO:1), wherein each fragment is covalently connected at its C-terminal through a linker.

[0033] Preferably the peptide is an agonist on type I IL-4R and an antagonist on type II IL-4R.

[0034] Thus, the present invention relates to a peptide or a pharmaceutically acceptable salt thereof for use in the treatment of diabetic nephropathy, wherein said peptide has the structure of Formula:

[0035] In a most preferred embodiment of the first aspect, the present invention relates to a peptide or a pharmaceutically acceptable salt thereof for use in the treatment of diabetic nephropathy, wherein said peptide is a dimer of SEQ ID NO:1 connected through a linker (lysine-beta-alanine) as shown in the structure below (compound A):

[0036] In a second aspect, the present invention relates to a pharmaceutical composition for use in the treatment of diabetic nephropathy, wherein said pharmaceutical composition comprises one or more peptides or a pharmaceutically acceptable salt thereof according to the aspects and embodiments disclosed herein. The pharmaceutical composition may comprise acceptable pharmaceutical carriers and optionally one or more excipients.

[0037] The pharmaceutical composition (i.e. formulation) includes but are not limited to tablets, pills, capsules, emulsions, suspensions, sustained release formulations, solutions, or freeze-dried powder intended for dissolution prior to administration. In some embodiments, the formulation may be a depot formulation providing slow release. It should be appreciated that different routes of administration may be used depending on the choice of formulation and chemical and / or metabolic stability of the polypeptides. Such administration routes may include but are not limited to oral administration, parenteral administration (intravenous (IV), subcutaneous (SC), intradermal (ID) and intramuscular (IM)), or inhalation. In a preferred embodiment of the disclosure, the administration route is parental administration. In an even more preferred embodiment, the administration route is subcutaneous.Examples - Effect of an IL-4 derived peptide on markers of diabetic nephropathy Material and methods Animals

[0038] 28 female mice (BKS.Cg-Dock7m + / + Lepradb / db BLKS, 5 weeks of age) were transferred to the Gubra Research animal unit. Throughout the habituation and study period, the animals were housed in a light-, temperature-, and humidity-controlled room with free access to food and water. All animal experiments were conducted in accordance with Gubra's bioethical guidelines, which are fully compliant with internationally accepted principles for the care and use of laboratory animals. The animals were group-housed until uni-nephrectomies, then single-housed.

[0039] The animals were terminated on day 77; blood was taken for later analysis, body weight was recorded, and spot urine was collected.Compounds

[0040] Compound A was provided by Phlogo ApS, Copenhagen, Denmark (10mg / ml miliQ water diluted to the dose formulations). Compound A was provided as a dimeric peptide comprising two copies of the sequence AQFHRHKQLIRFLKRA (SEQ ID NO:1). The synthesis of compound A was performed with a Rink linker coupled to the resin. A beta-alanine was chosen as spacer between the Rink linker and the lysine, on which the dimeric peptide was constructed, in order to lower steric repulsion between the bulky Rink linker and the dimeric peptide. Vehicle was miliQ:PBS 1:5.In vivo procedures

[0041] After one week of acclimatization, the mice received an IV injection of Renin adenosine-associated virus (AAV). One week later, all mice were uni-nephrectomized. Two weeks after the Renin AAV IV injection, the mice were randomized according to blood glucose into two groups: a vehicle group (n=14) and a 10 mg / kg Compound A (n=14). The compound as well as the vehicle groups were administered subcutaneously once daily.Biochemical analysis

[0042] Urine samples were stored at minus 80 °C until analysis. Urine for measurement of albumin and creatinine was centrifuged at 2000 g for 2 min. prior to analysis. Urine albumin was measured using a commercial ELISA kit (Bethyl Laboratories, Inc.), according to the manufacturer's instructions, and urine creatinine was measured using a commercial kit (Roche Diagnostics) on the Cobas c 501 autoanalyzer, according to the manufacturer's instructions. Urinary KIM-1 was measured using a commercial ELISA kit (R&D Systems) according to the manufacturer's instructions.Results

[0043] Compared to vehicle, the tested Compound A significantly decreased both ACR mg / g (Fig. 1) and KIM-1 / CR pg / g (Fig. 2).Discussion

[0044] The ReninAAV UNx db / db mice model is described as one of the best pharmacological models to describe the development of diabetic nephropathy and thereby to elucidate the compound's influence on the progression of the disease (Sembach 2020). Urine albumin and KIM-1 are both strong biomarkers of kidney innate inflammation.

[0045] The results demonstrated herein indicate that Compound A mimics IL-4 protein stimulation of the IL-4Ra1 inducing an anti-inflammatory effect. Compound A significantly reduced both urinary albumin, a biomarker from mainly glomerular endothelial and podocyte cell damages, and KIM-1, a biomarker from apical membrane of the proximal renal tubule cell damage. These biomarkers are undetectable in urine from a normal kidney but detectable as response to ischemic or toxic insults, including diabetes.Sequence overview

[0046] SEQ ID NO:1 AQFHRHKQLIRFLKRA SEQ ID NO:2 Ac-AQFHRHKQLIRFLKRA SEQ ID NO:3 (IL-4 peptide including signal peptide, 153 amino acids) SEQ ID NO:4 (IL-4 peptide without signal peptide, 129 amino acids) References

[0047] Klementiev B. et al.: Antiinflammatory properties of a peptide derived from interleukin-4. Cytokine, Vol. 64, No. 1, 10.2013, p. 112-21. Frederikke E Sembach, Mette V Østergaard, Niels Vrang, Bo Feldt-Rasmussen, Keld Fosgerau, Jacob Jelsing, Lisbeth N Fink: Rodent models of diabetic kidney disease: human translatability and preclinical validity. Review Drug Discov Today. 2021 Jan;26(1):200-217. James P. Tam: Synthetic peptide vaccine design: Synthesis and properties of a high-density multiple antigenic peptide system. Proc. Natl. Acad. Sci. USA, Vol 85, pp. 5409-5413, August 1988.

Claims

1. A peptide or a pharmaceutically acceptable salt thereof for use in the treatment of diabetic nephropathy, wherein the peptide is a dimer comprising two fragments, each fragment consisting of the amino acid sequence AQFHRHKQLIRFLKRA (SEQ ID NO:1), wherein each fragment is covalently connected at its C-terminal through a linker.

2. A peptide for use according to claim 1, wherein said peptide has the structure of Formula (II):

3. A peptide for use according to any of the preceding claims, wherein said peptide is an agonist on type I IL-4R and an antagonist on type II IL-4R.

4. A pharmaceutical composition for use in the treatment of diabetic nephropathy, wherein said pharmaceutical composition comprises a peptide according to any of the preceding claims.