Compositions and methods for detecting and depleting sample interference
By using streptavidin-coated nanoparticles and biotin-saturated streptavidin-coated beads, the interference from biotin and antibodies in IVD assays is reduced, resulting in more accurate diagnostic outcomes.
Patent Information
- Application Number
- JP2022541772
- Authority / Receiving Office
- JP · JP
- Patent Type
- Patents
- Current Assignee / Owner
- Priority Date
- 2020-04-07
- Filing Date
- 2020-06-25
- Publication Date
- 2025-06-09
- Estimated Expiration
- 2040-06-25
AI Technical Summary
Current in vitro diagnostic (IVD) assays are vulnerable to interference from biotin, anti-biotin antibodies, and anti-streptavidin antibodies, leading to inaccurate test results and potential misdiagnosis or delayed treatment.
The development of reagents such as streptavidin-coated nanoparticles and biotin-saturated streptavidin-coated beads that can detect and remove interfering substances, thereby improving the accuracy of diagnostic assays.
These reagents effectively reduce interference from biotin and antibodies, leading to more accurate diagnostic results and minimizing the risk of misdiagnosis.
Smart Images

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Abstract
Description
Technical Field
[0001] Cross - Reference to Related Applications This application claims the benefit of priority to U.S. Provisional Patent Application No. 63 / 006,630, filed Apr. 7, 2020, and No. 62 / 866,318, filed Jun. 25, 2019, the entire contents of which are hereby incorporated by reference herein.
Background Art
[0002] Every nine minutes, someone dies due to misdiagnosis or delayed diagnosis [1]. Physicians rely on diagnostic tests to proceed with treatment, but more than 2% of tests can be inaccurate due to multiple interferences in blood or urine (e.g., biotin in blood tests) [2].
[0003] Biotin, also known as vitamin B7, vitamin H, and coenzyme R, is a water - soluble vitamin often found in high doses in over - the - counter (OTC) nutritional supplements, multivitamins, and prenatal vitamins. Biotin is marketed for health and beauty, including hair, skin, and nail growth, as well as weight loss. It is also administered to patients at high pharmaceutical doses to treat certain medical conditions such as multiple sclerosis. However, biotin can significantly interfere with certain clinical tests, resulting in inaccurate test results, which may go undetected and lead to misdiagnosis or delayed treatment [3 - 13].
[0004] In 2017, the FDA issued a safety warning because a number of adverse events were associated with inaccurate test results and biotin supplementation
[14] . On June 13, 2019, the FDA published a notice of a draft guidance regarding "Testing for Biotin Interference in In Vitro Diagnostic Devices"
[15] .
[0005] In vitro diagnostic (IVD) companies are actively working on redesigning or reconstructing tests so that they require much higher biotin concentrations to interfere with the test in order to reduce biotin interference or increase the biotin interference threshold. However, these biotin-based tests are still vulnerable to secondary interference mechanisms related to biotin or biotin use by patients, namely anti-biotin interference [16-17], as well as interference mechanisms related to the use of streptavidin in test designs to capture biotin conjugated to antibodies, proteins or antigens, namely anti-streptavidin interference [18-26].
[0006] Antibodies and proteins against biotin and streptavidin can significantly interfere with certain clinical tests and cause inaccurate test results. Depending on the assay design and format, anti-biotin interference and anti-streptavidin interference, like biotin interference which causes a decrease in the test signal and false low or false high patient results, also result in a decrease in the test signal, but through different mechanisms, so they may be mistaken for biotin interference [16-26].
[0007] Although the FDA recently issued guidelines, in accordance with the recommendations of the Clinical and Laboratory Standards Institute (CLSI) standards and reflecting current biotin consumption trends, that IVD companies should test for biotin interference at a concentration of up to 1200 ng / mL, the FDA has not yet issued a safety warning regarding adverse events related to inaccurate test results due to human anti-biotin interference or human anti-streptavidin interference
[15] . Human anti-streptavidin interference and human anti-biotin interference have been reported in the literature, but it is difficult to detect and confirm these specific interference mechanisms or distinguish them from biotin interference.
[0008] Pretreatment of a sample using a binding surface (i.e., magnetic beads, non-magnetic beads, nanoparticles, microtiter plates / wells, cuvettes, slides, sensors, chips, rods, filters, membranes, tubes, or any other solid phase used to process a sample) that is immobilized or covalently attached to capture a partial or interfering specific target can be used to deplete, concentrate, and / or characterize sample interference or biomarkers prior to an assay to improve the accuracy of assay results
[27] . SUMMARY OF THE INVENTION MEANS FOR SOLVING THE PROBLEM
[0009] Most IVD assays utilize streptavidin-biotin binding. These assays are subject to heteroaffinity interference from free biotin and from agents that compete with or otherwise interfere with the binding between assay reagents and streptavidin or biotin, including anti-streptavidin antibodies and anti-biotin antibodies. Substances that interfere with the binding between assay reagents and streptavidin or biotin are referred to herein as anti-biotin or anti-streptavidin, whether the substance is an antibody or not. Reagents (beads) are disclosed herein that can be used 1) to detect or quantify these different types of interference and 2) to remove or deplete interfering substances that may be present in the assay reagents, sample, or reaction mixture so that more accurate assay results can be obtained. Methods for making and using these reagents are also provided.
[0010] Some of the reagents disclosed herein include nanoparticles coated with streptavidin for forming streptavidin beads. In some embodiments, some or all of the streptavidin is covalently bound to the nanoparticles. In some embodiments, the nanoparticles are magnetic to facilitate separation of the beads from the storage solution and processed samples, assay reagents, etc. In some embodiments, the nanoparticles may or may not be magnetic, and separation of the beads from the storage solution or processed samples is achieved by precipitation (such as centrifugation) or filtration. Other embodiments include free (or soluble) streptavidin. In embodiments of either free or coated beads, the streptavidin is saturated (or quenched) with a minimal excess of biotin so that the streptavidin cannot crosslink between biotinylated assay reagent molecules and become a heteroaffinity interference source. Saturation means that all accessible biotin binding sites on the streptavidin are occupied by biotin. Free biotin-saturated streptavidin is suitable, for example, for use as an anti-streptavidin heteroaffinity interference blocking reagent that can be added (if present) to the assay reaction mixture. Biotin-saturated streptavidin-coated beads are suitable, for example, for use as an anti-streptavidin heteroaffinity interference washing reagent that can be added to the biological fluid or extract (sample) to be assayed and then removed before being added to the assay reaction mixture. In some applications, the washing reagent can be removed in addition to the assay reagent or partial assay reaction mixture before completing the assay reaction mixture and starting the assay reaction.
[0011] Embodiments utilizing streptavidin are described throughout this disclosure. However, additional embodiments are contemplated that include alternatives such as avidin, deglycosylated avidin (neutravidin), CaptAvidin, monomeric avidin, etc. Natural and recombinant forms of streptavidin, as well as alternatives thereto, are contemplated. These reagents can be referred to as means for binding biotin or means for binding anti-streptavidin interference.
[0012] Embodiments that utilize biotin to quench or saturate the streptavidin active biotin-binding site are described throughout this disclosure. However, biotinylated agents such as biotin-PEG n -COOH and biotin-PEG n -CH 3 and biotin-PEG n -OH, or additional embodiments using other biotin-R-(non-reactive end chemistry) where R is a carbon chain or a ring structure are also contemplated. Biotin and these modified forms of biotin are such that these reagents may be referred to as means for binding to biotin or means for binding to anti-biotin interference.
[0013] In further embodiments, streptavidin-coated beads, biotin-saturated streptavidin-coated beads, streptavidin, or quenched streptavidin are modified by conjugating to one or more additional capture moieties (in addition to anti-streptavidin interference) to remove other heteroaffinity or cross-reactivity interferences. In one aspect of these embodiments, the additional capture moiety is conjugated to biotin-saturated streptavidin-coated beads and is further suitable for use as an anti-biotin heteroaffinity interference wash reagent. In a further aspect of these embodiments, the additional capture moiety is a protein such as ruthenium (element), luminol, acridinium ester, ABEI or cyclic ABEI (organic small molecule such as biotin), or signal generating enzyme (e.g., alkaline phosphatase or horseradish peroxidase), streptavidin, antibody (e.g., antibody from a non-human species), or antigen. In still further aspects, the capture moiety may be any non-antibody peptide or protein. In all of these examples, the additional capture moiety renders streptavidin-coated beads or biotin-saturated streptavidin-coated beads suitable for use as a wash reagent to remove or deplete heteroaffinity or cross-reactivity interferences associated with the conjugate molecule. Some embodiments include one or more capture moieties. Some embodiments do not include one or more capture moieties. For example, in some embodiments, the additional capture moiety is not biotin.
[0014] To achieve conjugation to streptavidin (soluble, or bead-bound, biotin-saturated or unsaturated), several chemicals are available. Conjugation can proceed using amine-reactive reagents to form a bond with streptavidin, typically a primary amine such as an ester, for example, an NHS-modified compound or protein. Alternatively, the primary amines of streptavidin may be thiolated. Standard thiolation reagents are known in the art and include succinimidyl trans-4-(maleimidylmethyl)cyclohexane-1-carboxylate (SMCC) and succinimidyl 3-(2-pyridyldithio)propionate (SPDP). Next, conjugation can be carried out using a thiol or sulfhydryl-reactive reagent, such as a maleimide-modified compound or protein. In another alternative, the primary amines of streptavidin are reacted with maleimide using a standard ester-maleimide heterobifunctional crosslinker. Next, conjugation can be carried out using a thiol or sulfhydryl-modified (or containing) compound or protein. These chemical reactions and related reagents may be referred to as means of conjugation, and the reaction itself may be referred to as a step of conjugation.
[0015] Typically, conjugation of an additional capture moiety to streptavidin-coated beads, biotin-saturated streptavidin-coated beads, streptavidin, or quenched streptavidin involves the use of a heterobifunctional linker. The functional group at one end of the linker forms a covalent bond to streptavidin, and the functional group at the other end forms a covalent bond to the additional capture moiety. The chemical nature of specific functional groups is described below. In some embodiments, the capture moiety attached to the linker may be commercially available. Some embodiments specifically include a particular functional group or set of functional groups. Some embodiments do not specifically include a particular functional group or set of functional groups. In some embodiments, the central portion of the heterobifunctional linker includes polyethylene glycol (PEG) or polyethylene oxide (PEO). In aspects of this embodiment, the linker is, for example, PEG n or PEO nIt may contain multiple units of PEO or PEG such as etc., and n is an arbitrary integer from 1 to 36. In a further aspect, instead of being a linear monofunctional PEG, the PEG linker may be branched or dendritic, such as monodisperse PEG, trifunctional PEG, 4-arm PEG, 8-arm PEG, hetero-bifunctional PEG, homo-bifunctional PEG, etc. Other linkers are disclosed below.
[0016] Various methods of conjugating biotin to biotin-saturated streptavidin are disclosed herein below. However, any other capture reagent may be similarly conjugated to streptavidin (biotin-saturated or non-biotin-saturated, bead-bound or non-bead-bound).
[0017] In an alternative embodiment, the additional capture moiety is not covalently bound but is bound using a biotin linker. In some embodiments, the additional capture moiety is biotin and the linker has biotin molecules at each end, e.g., biotin-PEG n -biotin. In such embodiments, the bis-biotin linker is added as a small proportion of the biotin used in the streptavidin saturation procedure (to avoid cross-linking between beads). Thus, the biotin at one end binds to streptavidin and the biotin at the other end is free to serve as a capture moiety. In other embodiments, a linker having biotin at one end and any other capture moiety at the other end, e.g., biotin-(PEO)n-ruthenium, is used. In further embodiments, two or more different capture moieties can be introduced via this approach, such as co-coating streptavidin with, for example, biotin-(PEO)n-ruthenium and biotin-(PEO)n-alkaline phosphatase. In these embodiments, cross-linking between beads should not be a problem, so a potentially larger proportion of the biotin used in the streptavidin saturation procedure can be the biotin linked to the capture moiety. However, steric considerations based on the size of the capture moiety and the length of the linker can be limiting factors.
[0018] One embodiment is a method of reducing interference in a liquid biological sample. Other embodiments are methods of reducing interference in a diagnostic assay. In some embodiments, biotinylated streptavidin (biotin quenched streptavidin, QSAv) is combined with a liquid biological sample and mixed to form a mixture that promotes the binding of interference to streptavidin so as to block or reduce interference. Some embodiments further include performing a diagnostic assay. In some embodiments, the combining and mixing are performed prior to the analysis stage of the assay. As used herein, the term "analysis stage of the assay" begins when the sample is mixed with reagents to obtain or detect an analyte and / or generate a signal that indicates or quantifies the presence of the analyte, and continues throughout the measurement of the signal.
[0019] In other embodiments (for reducing or minimizing interference), particles comprising streptavidin (whether or not biotin quenched) are combined with a liquid biological sample and mixed to form a mixture that promotes the binding of interference to streptavidin, and the particles are separated from the sample to remove or reduce interference. Some embodiments further include performing a diagnostic assay. In some embodiments, the combining, mixing, and separation are performed prior to the analysis stage of the assay. In one aspect of these methods, the particles are magnetic, and separating the particles from the sample comprises exposing the mixture to a magnet and recovering the liquid sample. In a further aspect, the sample is not diluted and there is little or no loss of the sample.
[0020] In some embodiments of these methods for reducing or minimizing interference, the sample is used in a sandwich immunoassay. In other embodiments, the sample is used in a competitive immunoassay.
[0021] One embodiment is a method of making quenched streptavidin. Some of these embodiments include exposing streptavidin to a minimal molar excess of free biotin. In one aspect, this can include metered addition to combine a biotin solution with a streptavidin solution. Some of these embodiments include washing the quenched streptavidin with a hot buffer. In one aspect, this can include diafiltration. Some embodiments include blocking streptavidin to avoid aggregate formation. Some embodiments include conjugating an additional capture moiety to the quenched streptavidin. Some embodiments include quenched streptavidin made by any of these methods.
[0022] Some embodiments are methods of making particle-conjugated streptavidin. Some of these embodiments include exposing particle-conjugated streptavidin to a minimal molar excess of free biotin. In one aspect, this can include metered addition to combine a biotin solution with a particle-conjugated streptavidin suspension. Some of these embodiments include washing the quenched streptavidin with hot water. In one aspect, this can include magnetic separation of the particles. In other aspects, this can include separation of the particles by filtration or precipitation. Some embodiments include conjugating an additional capture moiety to the particle-conjugated streptavidin, whether or not biotin quenched. Some embodiments include particle-conjugated streptavidin made by any of these methods, whether or not biotin quenched.
Brief Description of the Drawings
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Best Mode for Carrying Out the Invention
[0031] Despite existing approaches to identifying or depleting compounds that cause assay interference, there remains a clinical need for a rapid and easy-to-use product solution for detecting and reducing anti-biotin and anti-streptavidin interference in patient samples. Such a product solution would also facilitate prevalence studies and help clinicians and laboratory medicine specialists better understand which patients and patient populations are most at risk for these interferences.
[0032] There is also a clinical need to reduce anti-streptavidin interference in patient samples by using a blocking reagent specific for anti-streptavidin interference in assay formulations. Further, since this product solution will result in reduced anti-streptavidin interference by diagnostic assay design, it will also minimize the impact on laboratory workflows.
[0033] Immunoassays are susceptible to the effects of interferences that can lead to false high or low level reporting of the analyte being assayed. One type of interference is related to signal generation and observation. These include factors such as turbidity, hemolysis, quenching, and inhibition of signal-generating enzymes. In general, these interferences are directly observable or can be tested without special reagents. The embodiments disclosed herein do not address such signal generation / observation interferences, and the general reference to interference herein does not include such interferences.
[0034] Another type of immunoassay interference relates to the capture and physical detection of the analyte. These include interferences that inhibit the interaction between the analyte and the capture or detection reagent, or that result in the association of the capture and detection reagents regardless of the presence (or absence) of the analyte. This type of interference is referred to as heteroaffinity interference, and as used herein, "interference" should be understood to mean heteroaffinity interference unless the context indicates otherwise. The embodiments disclosed herein address various specific heteroaffinity interferences. Generally, heteroaffinity interferences cannot be directly observed, nor can their presence be readily demonstrated with standard assay reagents. Some of the embodiments disclosed herein include things that can be used to indicate or quantify the presence of specific heteroaffinity interferences. Heteroaffinity interferences include, in addition to biotin, antibiotin, antistreptavidin, and anti - heterologous antibody interferences, interferences that bind to components of the assay signal - generating system (enzymes, fluorophores, etc.). Anti - heterologous antibody interferences include human antibodies that recognize immunoglobulins from mice, rats, rabbits, sheep, cows, and / or goats.
[0035] Another type of immunoassay interference is related to cross - reactive antibodies. Cross - reactivity between antigens occurs when an antibody directed against a particular antigen succeeds in binding to a different, distinct antigen. In other words, cross - reactivity involves the binding of an antibody to an antigen other than its immunogen. This can be particularly problematic, for example, in immunoassays aimed at detecting antibodies that recognize antigens derived from a specific bacterial strain or viral strain. Such assays are commonly used to determine whether a subject has been exposed to (or infected with) a particular pathogen or drug. If the subject has been previously exposed to a related strain, there is a possibility that the subject has antibodies that cross - react with the antigen from the strain that the assay is intended to detect, thus producing a false - positive result.
[0036] As used herein, "immunoassay" generally refers to an assay in which the detection or quantification of an analyte uses an antibody (or an antigen-binding fragment or derivative thereof) that specifically binds to the analyte. However, it is also possible to design an assay in which a non-antibody agent that can specifically bind to the analyte is used in a manner similar to an anti-analyte antibody. In some embodiments, the non-antibody agent that can specifically bind to the analyte is an aptamer or a molecularly imprinted polymer. Thus, in some embodiments, "immunoassay" can include an assay in which a non-antibody agent provides the analyte-specific binding activity typically provided by an antibody. Various embodiments specifically include or do not include an antibody or a non-antibody agent as the analyte-specific binding activity. Some embodiments specifically include or do not include an aptamer or a molecularly imprinted polymer. Immunoassays can be classified into classes based on the technical and physical arrangement of the components and the assay format. In one class, it involves combining a detection and / or signal generation reagent in a container, such as a microtube or microtiter plate, where the assay reaction takes place, with a sample (which may contain the analyte). The reagent can be added to or removed from the container during the course of the assay. (In some variations, a portion of the assay components is removed from the first container and added to a second container where the assay proceeds.) Such assays are referred to herein as "pot" assays. In another class, a portion of the detection and / or signal generation reagent is immobilized in a specific region of a solid substrate or matrix (e.g., a membrane). The sample (potentially containing the analyte) is applied to a specific location on a device containing the solid substrate or matrix, and, for example, by lateral flow, often passes through the region where the reagent is immobilized to encounter the immobilized reagent. Additional assay reagents move with the mobile phase. Such assays are referred to herein as "zone" assays.From the time a sample is added to a container in which an assay reaction for a pot assay is performed, or from the time a sample is added to a specific location of a solid substrate for a zone assay or a device containing a substrate, the entire measurement of the generated signal is referred to as the analysis stage of the assay. In many embodiments, the interference washing or blocking reagents disclosed herein are added to the sample and, for washing reagents, removed from the sample before the analysis stage. That is, in these embodiments, the interference reduction reagent is used as a "pretreatment".
[0037] Patients who consume high doses of biotin for health and beauty (5,000 - 20,000 mcg per day) or therapeutically (100,000 - 300,000 mcg per day) may have circulating biotin levels of up to 1,000 ng / mL or more in the blood, depending on the elapsed time since biotin intake, the patient's individual biotin clearance time, and if the patient has kidney disease or renal dysfunction, which can impair biotin clearance and increase circulating biotin levels. If the patient's free biotin has not yet been removed below the assay-specific biotin interference threshold before a blood, serum, or plasma sample is taken, or before a urine sample is collected, biotin in the sample that exceeds the assay-specific biotin interference threshold competes for and binds to an anti-biotin capture moiety (i.e., streptavidin, avidin, neutravidin, monomeric avidin, CaptAvidin, or an antibody / antibody fragment / Fab / F(ab)'2, aptamer, and molecularly imprinted polymer specific for biotin), which then interferes with the binding of biotinylated antibodies, proteins, or antigens used in the assay formulation. This results in a false low assay signal and, depending on the assay format, a false low dose (sandwich assay) or false high dose (competitive inhibition assay).
[0038] Streptavidin is a protein of approximately 52,000 - 55,000 KDa and is composed of four identical polypeptide chains. As used herein, monomeric streptavidin refers to non-aggregating streptavidin protein and does not refer to dissociable streptavidin polypeptide chains. The binding of biotin to streptavidin (reported variously in the literature as 10 -14 or 10 -15 mol / L) is one of the strongest non-covalent interactions known in nature. Recombinant streptavidin is a suitable tool for enabling universal assay systems in immunology and molecular diagnostics and is commonly used in diagnostic assays such as immunoassays for capturing biotinylated antibodies, proteins, and antigens, or for attaching various biomolecules to each other or onto solid supports such as microplates, beads, and microarrays. The use of streptavidin allows assay developers to utilize proven anti-biotin delayed capture assay formats for improving assay kinetics, accuracy, and sensitivity, while facilitating shortening of assay incubation times and turnaround time (TAT) for STAT assays.
[0039] When the sample contains interference with specificity for streptavidin, anti-streptavidin interference can sterically inhibit or weaken the ability of a conjugate biotin to bind to the biotin-binding site of streptavidin by binding to streptavidin or its polypeptide chain. If streptavidin can no longer freely bind to biotinylated antibodies, proteins, or antigens used in the assay design or assay format, similar to biotin interference, anti-streptavidin interference will result in false low assay signals and can result in false low doses (sandwich assays) or false high doses (competitive inhibition assays). Similarly, when the sample contains interference with specificity for biotin, anti-biotin interference can sterically inhibit or weaken the ability of a conjugate biotin to bind to the biotin-binding site of streptavidin by binding to biotin. When biotin is derived from biotinylated antibodies, proteins, or antigens used in the assay design or assay format, anti-biotin interference will result in false low assay signals and can result in false low doses (sandwich assays) or false high doses (competitive inhibition assays). Some embodiments address anti-streptavidin interference. Some embodiments address both anti-streptavidin interference and anti-biotin interference.
[0040] The biotin-streptavidin interaction is commonly used in the capture portion of immunoassay mechanisms, whereas heteroaffinity interference can also occur through interactions with common detection components. Such components can include phosphors such as fluorescein or elemental ruthenium, chemiluminescent agents such as luminol, acridinium esters, ABEI, and cyclic ABEI, bioluminescent agents such as luciferin, and enzymes such as alkaline phosphatase or horseradish peroxidase. Interference binding to these signal-generating molecules can cause cross-linking between the detection antibody (or other detection reagent) bound to the analyte and the detection antibody (or other detection reagent) that does not result in a false high signal. Some embodiments address both anti-streptavidin interference and anti-signal-generating molecule interference.
[0041] Immunoassays typically utilize antisera, polyclonal antibodies, or monoclonal antibodies derived from non-human species. Serum or other assay samples may contain interference that recognizes these heterologous antibodies (sometimes referred to as human anti-animal antibodies (HAAA)). In particular, humans produce antibodies against a wide variety of animal species. Generally, these are the most interacting species such as mice, cows, horses, dogs, cats, goats, rabbits, and sheep. Among them, antibodies derived from mice, goats, rabbits, and sheep, especially IgG, are very commonly used in clinical immunoassay systems. However, in samples from non-human subjects, similar heteroaffinity interferences may occur. Such anti-antibody interferences can cause cross-linking between the capture antibody and the detection antibody in the absence of the bound analyte, or between the detection antibody bound to the analyte and the detection antibody not so bound, resulting in false high or false low signals. Some embodiments address both anti-streptavidin interference and anti-heterologous antibody interference.
[0042] There are two modes for dealing with interference, blocking, and washing in immunoassays. As used herein, a blocking reagent is present during the assay reaction and by its interaction with interfering substances, prevents or reduces interference. Some embodiments include or utilize soluble biotinylated streptavidin and are suitable for blocking anti-streptavidin interference. In some embodiments, the soluble biotinylated streptavidin is conjugated with a second molecule of interest that is bound by an interfering substance such as, for example, biotin, a signal generating molecule, or a heterologous antibody. Embodiments that include or utilize soluble biotinylated streptavidin conjugated with a second interfering target molecule are suitable for blocking both anti-streptavidin interference and anti-second molecule interference. Some embodiments specifically include one or more genera or species of the second interfering target molecule. Some embodiments do not specifically include one or more genera or species of the second interfering target molecule. The blocking reagent may be added during the analysis stage of the assay or added at a pre-analysis stage and remain during the analysis stage. In some embodiments, the blocking reagent may also be encountered during the analysis stage of a zone assay such as a lateral flow assay or may be retained in a particular zone of such an assay. As used herein, the analysis stage of an assay refers to the temporal and / or physical portion of the assay or assay system where capture, detection, and quantification of the analyte occur.
[0043] The terms "block" and "blocking" are conceptually related but are used in more than one sense in this specification. In the preparation of the reagents disclosed herein, "blocking", etc., is used to account for the inhibition or other reduction of the reactivity of chemical reaction sites and the effective affinity of specific and / or non-specific binding sites. This may be referred to as preparation blocking. Thus, the surfactants and polymeric blocking reagents used herein, which are used to prevent reaction and / or non-specific binding to streptavidin-coated beads or the core nanoparticles of protein assemblies disclosed herein, are related to "block" and "blocking" in this sense. The saturation of streptavidin with biotin can also be considered a form of preparation blocking, where biotin is considered a blocking reagent. Preparation blocking should not be confused with blocking to prevent or reduce assay interference, which is a separate function.
[0044] As used herein, a wash reagent is added to serum or other biological samples (or other components of an immunoassay reaction mixture) and then removed from the sample or other components before the components of the immunoassay reaction mixture are combined and mixed together. That is, the wash reagent is used and removed during the pre-analytical stage of the assay and is not present during the analytical stage. Interference is prevented or reduced by depleting or removing interfering substances from the sample and / or other assay reagent interferences. Some embodiments include or utilize biotin-saturated streptavidin beads, which are biotin-saturated streptavidin coated on magnetic nanoparticles. Such biotin-saturated streptavidin beads are suitable for washing streptavidin interference. In some embodiments, the biotin-saturated streptavidin of the beads is conjugated with a second molecule that is bound by an interfering substance such as, for example, biotin, a signal generating molecule, a heterologous antibody, or an antigen. Embodiments that include or utilize biotin-saturated streptavidin beads in which streptavidin is conjugated with a second interfering target molecule are suitable for washing both anti-streptavidin interference and anti-second molecule interference. Some embodiments specifically include one or more genera or species of the second interfering target molecule. Some embodiments do not specifically include one or more genera or species of the second interfering target molecule.
[0045] The biotin-saturated streptavidin beads are magnetically separated from their storage buffer, and after the storage buffer is removed, a sample or reagent can be washed and added to the beads so that the sample or reagent is not diluted during the washing process, unlike the use of soluble blocking reagents. In other embodiments, the beads are separated from the fluid phase by filtration or precipitation.
[0046] Assays that use streptavidin in the assay design, format, or formulation cannot simply use native streptavidin as a specific blocker, additive, or component in the assay buffer to reduce anti-streptavidin interference in the sample. When used as a blocker in the test, streptavidin can also compete with and bind to biotinylated antibodies, proteins, oligomers, or antigens, generating false low assay signals and resulting in false low doses (sandwich assays) or false high doses (competitive inhibition assays). This is a particular concern with streptavidin because it has a very strong binding constant and affinity for biotin. Some assays can reduce lower titers or concentrations of anti-streptavidin interference by increasing the total amount or concentration of streptavidin used in the assay, but this is assay-specific and assay format-specific and increases the cost of the assay. This may not work if the sample contains high titers or high levels of anti-streptavidin interference that exceed the assay-specific streptavidin interference threshold.
[0047] The interference blocking reagent disclosed herein is based on biotinylated streptavidin, also known as quenched streptavidin (QSAv). QSAv should be primarily non-aggregating, i.e., it should be based on monomeric streptavidin protein. In some embodiments, the primarily non-aggregating QSAv has <1% dimer or <5% aggregation by size exclusion chromatography HPLC and the observed average molecular weight of the monomer peak is 52 - 55 KD. In other embodiments, QSAv is at least 80, 90, 95, 97, 98, 99% monomer, or any range bounded by those values. In some embodiments, streptavidin is blocked with, for example, a surfactant or a polymeric blocking reagent to maintain it in a monomeric non-aggregating state. QSAv can be used to block anti-streptavidin interference. In some embodiments, streptavidin may be modified with one or more additional capture moieties before, during, or after biotinylation. The capture moiety may be covalently attached to streptavidin before or after the biotinylation process. Alternatively, the capture moiety may be biotinylated and attached to streptavidin via a biotin-avidin bond before or during the biotinylation process. However, if the additional capture moiety is biotin (e.g., achieved through the use of a bis-biotin linker), this must bind to streptavidin in the presence of excess free biotin, i.e., during saturation. Embodiments containing streptavidin modified with one or more additional capture moieties can be used to block anti-streptavidin interference by agents that bind to the one or more capture moieties.
[0048] The interference washing reagent disclosed herein is based on streptavidin being conjugated to microparticles (or nanoparticles) to form streptavidinylated beads. The use of beads, particularly magnetic beads, facilitates the washing of samples or assay reagents without loss or dilution. In some embodiments, streptavidin is saturated with biotin, and in other embodiments it is not. Embodiments containing biotin-saturated streptavidin can be used as a washing reagent to remove or reduce anti-streptavidin interference. Embodiments containing non-biotin-saturated streptavidin can be used as a washing reagent to remove or reduce both biotin interference and anti-streptavidin interference. In some embodiments, streptavidin may be modified with one or more additional capture moieties before, during, or after biotin saturation. The capture moiety may be covalently attached to streptavidin before or after the biotin saturation process. Alternatively, the capture moiety may be biotinylated and attached to streptavidin via a biotin-avidin bond before or during the biotin saturation process. Embodiments containing streptavidin modified with one or more additional capture moieties can be used to block anti-streptavidin interference by agents that bind to the one or more capture moieties. The one or more additional capture moieties may include biotin in those embodiments that utilize biotin-saturated streptavidin.
[0049] The additional capture moiety may be any substance that causes interference with heteroaffinity or cross-reactivity, except when streptavidin is not saturated with biotin, in which case the additional capture moiety cannot be biotin. In some embodiments, the additional capture moiety is ruthenium (element), luminol, acridinium ester, ABEI or cyclic ABEI (organic small molecules such as biotin), or a signal generating enzyme (e.g., alkaline phosphatase or horseradish peroxidase), streptavidin, an antibody (e.g., an antibody from a non-human species), or a protein such as an antigen. In some embodiments, the antigen is an epitope that can be recognized by an antibody that cross-reacts with the antigen used as the capture moiety in the immunoassay. In various embodiments, the washing or blocking reagent, or the antigen used as the capture moiety in the assay, is an allergen, an antigen derived from a pathogen, or an antigen associated with a disease or disorder, a herpes simplex virus antigen, and an autoimmune substance such as cardiac troponin I or TSH that has known autoantibody interference problems. In some embodiments, the antigen derived from a pathogen is a viral antigen, a bacterial antigen, or a protozoal antigen. In some embodiments, the capture moiety removes cross-reactive antibodies to coronaviruses other than MERS virus, SARS virus, or SARS-CoV-2. Some embodiments specifically include one or more of these genera or species of capture moieties. Some embodiments specifically exclude one or more of these genera or species of capture moieties.
[0050] Biotin linkers, or conjugated biotins, can be constructed or purchased using different linker types and lengths, as well as different functional groups for the covalent attachment of biotin to antibodies, antibody fragments, peptides, oligomers, antigens, and small molecules (conjugated biotins). Common linkers and functional groups used with biotin (e.g., NHS ester, TFP ester, hydrazide, maleimide, thiol, etc.) include NHS-biotin, NHS-LC-biotin, TFP-LC-biotin, NHS-chromalink-biotin, NHS-PEO 4 -biotin, NHS-(PEO) n- Biotin, TFP-(PEO) n - Biotin, hydrazide-biotin, hydrazide-LC-biotin, hydrazide-PEO 4 - Biotin, maleimide-(PEO) n - Biotin, and SH-(PEO) n - It is biotin. Biotin-labeling reagents can be amine-reactive, carboxyl-reactive, carbonyl-reactive, water-soluble, and cleavable. Examples include amine-reactive, carbonyl-reactive, carboxyl-reactive, cleavable biotin, click chemistry, desthiobiotin, sulfhydryl-reactive, tetrazine ligation, biotin alcohol, bis-biotin-PEG, and D-biotin-PEG-salidomide.
[0051] When the sample contains interference with the specificity for biotin, anti-biotin interference can bind to the conjugated biotin used in the assay design or assay format, sterically inhibit or impede the accessibility of the conjugated biotin, and bind to the streptavidin solid phase or other anti-biotin capture moieties. When the conjugated biotin can no longer freely bind to the anti-biotin capture moiety, similar to biotin interference and anti-streptavidin interference, anti-biotin interference can generate a false low assay signal, resulting in a false low dose (sandwich assay) or a false high dose (competitive inhibition assay).
[0052] Assays that use biotin conjugates in the assay design, format, or formulation cannot simply use biotin or conjugated biotin as a specific blocker, additive, or component in the assay buffer to reduce avidin interference in the sample. When used as a blocker in the assay, biotin can also compete with and bind to streptavidin used in the assay, generating false low assay signals and resulting in false low doses (sandwich assays) or false high doses (competitive inhibition assays). Low concentrations of biotin below the test-specific biotin interference threshold can be used to block avidin interference, but this can be problematic when the patient sample contains a combination or sum of sample biotin (endogenous biotin) and test biotin (biotin as a blocker) that exceeds the test-specific biotin interference threshold and includes biotin interference close to the interference threshold, which can result in false low assay signals and false low doses (sandwich assays) or false high doses (competitive inhibition assays).
[0053] Streptavidin binds biotin very rapidly and strongly (the binding constant is reported in the literature as 10 -14 or 10 -15mol / L, as variously reported). Some studies have shown protein structure changes or cooperative binding of biotin to the four binding sites [28 - 29], while other studies have concluded that there is no cooperative binding to biotin bound to the four subunits of the tetramer [30 - 31]. When streptavidin is exposed to a molar excess of free biotin, a very rapid and strong binding interaction of biotin to all four binding sites occurs, resulting in 100% biotin saturation (100BS) at all biotin binding sites. Due to having the strongest non-covalent binding interaction known in nature and a very slow off-rate of biotin from streptavidin under normal physiological conditions and pH, 100BS streptavidin has a very low potential to bind additional biotin or conjugated biotin such as biotinylated antibodies, proteins, oligomers, and antigens in diagnostic assays. As used herein, saturation refers to the blocking of biotin binding sites on streptavidin by biotin. This is a covalent bond of biotin to streptavidin, not biotinylation. Saturated streptavidin can bind anti-streptavidin substances but does not bind or cross-link biotin-containing substances. Biotin-saturated streptavidin may also be referred to as quenched streptavidin (QSAv).
[0054] Streptavidin can be saturated with biotin (i.e., D-biotin) to prepare 100BS streptavidin as a blocking agent, reducing and controlling anti-streptavidin interference. In other embodiments, quenching of the streptavidin active biotin-binding site can be alternatively achieved by exposing streptavidin to a soluble biotinylating agent such as biotin-PEG(n)-COOH or biotin-PEG(n)-CH3 or biotin-PEG(n)-OH, or other biotin-R-(non-reactive terminal chemical reaction) where R is a carbon chain or a cyclic structure. Saturation involves exposing streptavidin to a molar excess of biotin. In various embodiments, the molar ratio of biotin to streptavidin is in the range of 5:1 to 11:1, or 7:1 to 11:1, or 7:1 to 8:1. In some embodiments, the molar ratio is 7.4:1. In some embodiments, streptavidin is exposed to all of the saturated biotin constituting the described molar ratio in a single batch. In other embodiments, saturation proceeds through successive batches, each containing a fraction of the total biotin, and the sum of the batches constitutes the described molar ratio. For example, instead of a single batch with a ratio of 6:1, three successive batches with a biotin:streptavidin ratio of 2:1 can be used, and the biotin:streptavidin ratio need not be the same in each successive batch. In some embodiments, the biotin solution and the streptavidin solution are combined by quantitative addition via a Y-shaped connector. In some embodiments, there is an in-line mixer within the tube connected to the outlet of the Y-shaped connector, ensuring rapid, immediate, and complete mixing. The combination of pump speed and tube length can be used to determine the total interaction time in the saturation process. In some embodiments, 9 volumes of the biotin solution are combined with 1 volume of the streptavidin solution. In some embodiments, the streptavidin and biotin solutions are prepared in Tris-buffered saline, pH 8.5.In one embodiment, the initial streptavidin concentration is in the range of 0.1 to 10.0 mg / mL, and the resulting QSAv solution has a streptavidin concentration in the range of 0.01 to 1.0 mg / mL, preferably 0.02 to 0.05 mg / mL. Such conditions promote saturation of the biotin binding sites and reduce non-specific binding of biotin to streptavidin.
[0055] In some embodiments, the QSAv is then washed with a series of hot buffers by repeating the concentration and re-dilution of the QSAv, for example, using diafiltration in a hollow fiber filter. The washes are used to remove excess and non-specifically bound biotin so as not to be an interference source when using QSAv as an interference blocking reagent. In some embodiments, 4 - 6 or more washes, for example 5 washes, are used, followed by a final concentration step to reduce the volume to reach a desired concentration, for example 0.1 - 30 mg / mL, or 1 - 10 mg / mL. In one aspect, the volume can be reduced to 5 - 20%, for example 10%, of the original volume of the QSAv solution. In some embodiments, the temperature of the hot wash is 15°C - 60°C, preferably 40°C - 55°C, more preferably 45°C - 50°C. In some embodiments, the hot wash buffer has a pH in the range of 7.5 - 11, or 8 - 9, for example 8.5. In some embodiments, the hot wash buffer has an NaCl concentration in the range of 10 - 500 mM, or 20 - 150 mM, or 25 - 75 mM. In some embodiments, the buffer is 10 mM Tris, 50 - 150 mM NaCl. After the wash and final concentration steps, the free biotin concentration should be <1200 pg / mL, for example, <1000, <800, <700, or <600 pg / mL. In some embodiments, the washed QSAv solution contains 1 - 6 pg of free biotin / μg of streptavidin. In some embodiments, the effluent from the final diafiltration is combined by quantitative addition with PBS and appropriately concentrated to provide QSAv in PBS. In some embodiments for washing the sample, the volume of QSAv is added to a 400 μl sample such that the volume contains <480 pg of free biotin.
[0056] In some embodiments, the effluent from the saturation process is collected for later washing, and in other embodiments, the effluent from the saturation process is fed directly to a hollow fiber filter device. The effluent from the saturation process can be split and fed to multiple hollow fiber filters to increase the capacity and avoid excessive backpressure.
[0057] These streptavidin solutions are relatively dilute and somewhat prone to aggregation, which is a problem not encountered with bead-bound streptavidin. This is the reason why an alkaline buffer is used in the saturation and washing procedures for generating QSAv. (In contrast, water is used for similar washing of bead-bound streptavidin.) Aggregation can be further mitigated by including 0.01 - 1% w / v TWEEN® 20, or another surfactant, in the wash buffer. Aggregation can be further mitigated by covalent modification with a blocking reagent for preparation, for example by PEGylation of streptavidin, prior to saturation with biotin. Thus, in some embodiments, QSAv is blocked monomeric biotin-saturated streptavidin. In some embodiments, monomeric QSAv is <5% aggregates by size exclusion chromatography HPLC, and in other embodiments, monomeric QSAv is <1% aggregates.
[0058] In one embodiment, 100BS streptavidin (QSAv) can be used as a blocking reagent or protein blocker to target and deplete anti-streptavidin interference in a sample. 100BS streptavidin can be added to an assay buffer, a blocking buffer, or an assay component used in an assay formulation such as a detection antibody, or any combination thereof, to reduce the sensitivity of the assay to anti-streptavidin interference. In another embodiment, streptavidin is covalently attached to a microparticle-binding surface and then incubated with a molar excess of biotin to prepare 100BS streptavidin beads. 100BS streptavidin beads can be used to pretreat a sample to target and deplete anti-biotin interference prior to a diagnostic assay.
[0059] The interference cleaning reagent disclosed herein is based on streptavidin-conjugated beads. In some embodiments, streptavidin is quenched (saturated) with biotin after binding to the core particles. In some embodiments, streptavidin is quenched with biotin prior to attachment to the core particles, for example, using QSAv as described herein. In some embodiments, the core particles are magnetic. In some embodiments, the core particles are ≧500 nm in diameter, or about 0.5 micrometers, and thus may be referred to as either nanoparticles or microparticles. In some embodiments, the core particles are covalently bound to streptavidin using a 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide chemical reaction. To remove passively adsorbed streptavidin, prevent non-specific binding to the beads in further preparation steps, and when used as an interference cleaning reagent, the bead surface is conditioned with beads blocked using stripping reagents (salts, surfactants, low pH and high pH) and surfactant and polymer blocking reagents. This also promotes monodispersity and colloidal stability of the nanoparticles. To generate 100BS streptavidin beads, biotin quenching of streptavidin can be performed similar to the production of the above-described 10BS streptavidin (QSAv). Saturation involves exposure of bead-bound streptavidin to a molar excess of biotin. As described above, saturation of the streptavidin active biotin-binding sites can alternatively be achieved by exposing streptavidin to a soluble biotinylating agent such as biotin-Peg(n)-COOH or biotin-Peg(n)-CH3 or biotin-Peg(n)-OH, or other biotin-R-(non-reactive end chemistry) where R is a carbon chain or ring structure. In various embodiments, the molar ratio of biotin to streptavidin is in the range of 4:1 to 6:1, for example, 5:1. Since some of the biotin-binding sites become inaccessible due to steric hindrance by the core particles, the effective molar excess of biotin is somewhat higher than this formal ratio. In some embodiments, the streptavidinylated beads are suspended and the biotin solution is composed of PBS, pH 6.8.In some embodiments, the biotin solution and the bead suspension are combined in a container and, for example, mixed at room temperature for 1 hour. In some embodiments, the streptavidinylated bead suspension and the biotin solution are combined by quantitative addition and carried out essentially as described above in the production of QSAv.
[0060] In some embodiments, the biotin-saturated streptavidinylated beads are washed at a high temperature to remove passively adsorbed biotin so that they do not leach out during use and become a source of interference. Unlike the 100BS streptavidin described above, the washing of the 100BS streptavidin beads can utilize filtration, precipitation, or magnetic separation as an alternative to diafiltration. The washing may also be different from that of the 100BS streptavidin washed using high-temperature alkaline (pH ≥ 7.5) water instead of a buffer. The washing suspension is also sonicated. In some embodiments, the free biotin concentration in the suspension of the washed 100BS streptavidin beads is <1200 pg / mL, for example, <1000, <800, <600, <400, or <200 pg / mL. In some embodiments, the suspension of the washed 100BS streptavidin beads contains 5 - 30 pg of free biotin / μg of streptavidin. In some embodiments for washing a sample, a certain volume of 100BS streptavidin beads is added to a 400 μl sample such that the sample contains <480 pg of free biotin.
[0061] Free biotin (i.e., D-biotin) can be added to 100BS streptavidin or 100BS streptavidin bead storage solutions, assay buffers, or test components to improve the stability of 100BS streptavidin or 100BS streptavidin beads and ensure that streptavidin remains 100% saturated with biotin over time. In one embodiment, 100BS streptavidin in a storage solution, assay buffer, or test component containing excess biotin can be used as a blocking reagent that targets both anti-streptavidin and anti-biotin interference mechanisms using a single blocking reagent. In one embodiment, the blocking reagent can be used to pretreat a sample prior to testing to thereby block anti-streptavidin and / or anti-biotin interference mechanisms. In one embodiment, the blocking reagent can be used to block and reduce interference mechanisms during testing in a diagnostic test or assay design such as an assay buffer or reagent buffer. In one embodiment, free biotin can be added to 100BS streptavidin or 100BS streptavidin beads at a concentration within the physiological range of up to 1,100 pg / mL. In another embodiment, free biotin can be added to 100BS streptavidin or 100BS streptavidin beads at a high concentration such as 100,000 pg / mL (100 ng / mL) or 1,000,000 pg / mL (1,000 ng / mL). When 100BS streptavidin or 100BS streptavidin beads are stored in a solution containing free biotin, if there is biotin dissociating from streptavidin, due to the very strong binding constant and fast on-rate for biotin, it will be immediately replaced by another biotin from the biotin added to the storage solution, so 100BS streptavidin remains. Thus, 100BS streptavidin, or biotin-quenched streptavidin, can be used as a blocking reagent for streptavidin-based tests or immunoassays, where 100BS streptavidin is added to an assay buffer containing less than the physiological biotin concentration for stability.If any biotin dissociates from the streptavidin blocker, that biotin is replaced by the biotin added to the assay buffer, and thereafter the amount of biotin added from this assay buffer to the sample or test reaction is minimal and within the physiological biotin concentration range.
[0062] IVD companies are testing and providing test-specific biotin interference thresholds in their package inserts (PIs) or instructions for use (IFUs) for each assay that is susceptible to the effects of biotin interference [9, 14 - 15]. Assays with a biotin interference threshold of <51 ng / mL are considered high-risk assays, such as the Ortho Clinical Diagnostics Vitros cardiac TnI assay with a threshold of 2.4 ng / mL, or vulnerable immunoassays and competitive methods [9]. To improve stability and ensure 100% saturation over time, biotin can be added to 100BS streptavidin or 100BS streptavidin bead storage solutions, while to reduce assay interference from the biotin added to the storage solution, the final free biotin concentration must be less than the test-specific biotin interference threshold. In one embodiment, 100BS streptavidin or 100BS streptavidin beads are stored in a biotin solution at a biotin concentration within the physiological range (i.e., <1,100 pg / mL) so as not to interfere with the assay. In another embodiment, 100BS streptavidin beads are stored in a biotin solution containing >1,100 pg / mL of biotin, such as 2, 5, 10, 20, 30, 50, 100, 250, or 500 ng / mL of biotin. The 100BS streptavidin beads are then separated from the sample by filtration, centrifugation, or magnetically, or a combination thereof, such that the biotin storage solution is removed from the 100BS streptavidin beads before adding the sample to the 100BS streptavidin beads. Removing the biotin storage solution immediately prior to using the 100BS streptavidin beads reduces the free biotin concentration to less than 1,100 pg / mL, less than 500 pg / mL, or preferably less than 100 pg / mL, ensuring that the free biotin concentration is less than the biotin interference threshold of the assay.
[0063] 100BS streptavidin and the primary amines (R-NH 2 ) of 100BS streptavidin beads are biotinylated using amine-reactive biotin labeling reagents such as NHS-biotin, NHS-LC-biotin, NHS-LC-LC-biotin, NHS-chromalink-biotin, NHS-PEO 4- -biotin, and NHS-(PEO) n -biotin, TFP-(PEO) n -biotin (amine-reactive means), and also by biotin conjugating in molar excess of free biotin, by reducing the binding and capture of biotin labeling reagents by the streptavidin biotin binding site, it can be covalently bound to biotin. In one embodiment, streptavidin is covalently bound to a particulate binding surface, and the particulate binding surface is adjusted (blocked and removed) such that only the covalently bound streptavidin remains, and the streptavidin-conjugated particulate binding surface is exposed to a molar excess of free biotin (D-biotin), 100BS streptavidin beads are prepared, a molar excess of free biotin is added to the 100BS streptavidin bead storage solution (such as PBS pH 7.4), and the primary amine of 100BS streptavidin is conjugated to NHS-PEO 4 -biotin to prepare biotinylated 100BS streptavidin beads. Biotinylation of streptavidin-binding beads refers to the covalent attachment of biotin to magnetic particles (or streptavidin thereon) and should not be confused or identified with saturation of the biotin binding sites of streptavidin. Biotinylated streptavidin beads can bind anti-biotin substances (in addition to anti-streptavidin substances). The biotin used to saturate streptavidin generally does not bind to the most problematic anti-biotin substances because the necessary portion of the biotin molecule engages with streptavidin. In another embodiment, 100BS streptavidin or 100BS streptavidin beads are the streptavidin primary amine (R-NH 2Through thiolation of [[ID=]], succinimidyl trans-4-(maleimidylmethyl)cyclohexane-1-carboxylate (SMCC), succinimidyl 3-(2-pyridyldithio)propionate (SPDP), SPDP-PEG (4、6、8、12、24、または36) -NHS ester, SPDP NHS ester, SPDP-C6-NHS ester, SPDP-C6-Sulfo-NHS ester, PC SPDP-NHS carbonate ester, and SPDP-C6-Gly-Leu-NHS ester (means of thiolation), etc., standard thiolation chemical reactions known in the art are used to introduce a thiol group (sulfhydryl group, or R-SH) onto streptavidin. When using SPDP, SPDP conjugated to streptavidin is cleaved using TCEP and EDTA, and the SPDP leaving group is washed, desalted, or dialyzed, leaving only SH-R conjugated 100BS streptavidin. After preparing 100BS thiolated streptavidin with a molar excess of biotin, the thiols (R-SH) of 100BS streptavidin and 100BS streptavidin beads can be covalently bound to biotin using a thiol-reactive or sulfhydryl-reactive biotin-labeling reagent such as maleimide-PEO (2、3、6、または11) -biotin and biotin-SPDP (thiol or sulfhydryl-reactive means). The sulfhydryl-reactive biotin label is carried out in PBS pH 6.8 buffer containing EDTA (up to 2 mM), TCEP (<1 mM), and a molar excess of free biotin to 1) reduce thiols and mitigate disulfide bonds or crosslinks, and 2) reduce the binding and capture of the biotin-labeling reagent by the streptavidin biotin-binding site. The maleimide group has a reactivity 1000 times higher for free sulfhydryl than for amine at pH 6.5 - 7.5, and at pH > 8.5 the maleimide group reacts preferentially with primary amines, so the conjugation of maleimide is carried out at pH 6.8 to minimize the reaction with primary amines. As an alternative to SPDP, similar reagents based on N-succinimidyl-S-acetyl-thioacetate (SATA) can be used.
[0064] In another embodiment, the 100BS streptavidin or 100BS streptavidin beads are Succinimidyl 4-(N-maleimidomethyl)cyclohexane-1-carboxylate (SMCC), Maleimido-PEG-NHS ester, Maleimido-PEO (1,2,3,4,5,6,8または12) -NHS ester, or maleimide-PEG (1,2,3,4,5または6) Streptavidin primary amines (R-NH) were cross-linked using standard ester-maleimide heterobifunctional cross-linking chemistries known in the art, such as β-maleimide-PFP (a means of maleimidization). 2 After preparing 100BS maleimide streptavidin with a molar excess of D-biotin, the maleimides of the 100BS streptavidin and 100BS streptavidin beads can be covalently attached to biotin using maleimide-reactive biotin labeling reagents such as biotin-PEG-SH or biotin-PEG-thiol, where PEG is n or P.E.O. n may be of different lengths, such as n=1, 2, 3, 4, 5, 6, 8 or 12. Maleimide-reactive biotin labeling is performed in PBS pH 6.8 buffer containing EDTA (up to 2 mM), TCEP (<1 mM), and a molar excess of free biotin to 1) reduce thiols and mitigate disulfide bonds or cross-linking of the biotin-labeled reagent, and 2) mitigate binding and capture of the biotin-labeled reagent by streptavidin biotin binding sites. Maleimide biotin conjugation is performed at pH 6.8 because maleimide groups are 1000-fold more reactive to free sulfhydryls than amines at pH 6.5-7.5, and at pH>8.5 the maleimide group reacts preferentially with primary amines.
[0065] Similar ester, thiol, or maleimide chemistries are also applicable in embodiments where the streptavidin is not biotin saturated. For example, a ruthenium ester can be reacted with the primary amines of streptavidin.
[0066] In certain embodiments, 1) streptavidin is covalently attached to the microparticle binding surface, 2) the microparticle binding surface is conditioned to have extremely low non-specific binding by leaving only streptavidin covalently attached on the microparticle binding surface, 3) the streptavidin-conjugated microparticle binding surface is exposed to a molar excess of free biotin (D-biotin) to prepare 100BS streptavidin beads, 4) the 100BS streptavidin beads are covalently attached to biotin in the presence of a molar excess of free biotin using a biotinylated reagent, 5) the biotinylated 100BS streptavidin beads are filtered, centrifuged or magnetically separated to remove buffer and excess biotin, 6) the biotinylated 100BS streptavidin beads are washed multiple times with water at 50 °C and resuspended in a storage solution to obtain the final reagent.
[0067] In certain embodiments, 1) the biotinylated 100BS streptavidin beads are filtered, centrifuged, or magnetically separated to remove the storage solution, 2) a sample containing anti-streptavidin interference, anti-biotin interference, or both interferences is added to the biotinylated 100BS streptavidin beads to pretreat the sample, 7) the sample interference is depleted or reduced below an assay blocking threshold (ABT) or an assay interference threshold, 8) the biotinylated 100BS streptavidin beads are filtered, centrifuged, or magnetically separated from the sample, and 9) the sample supernatant, essentially free of beads, is aspirated and assayed by a diagnostic assay to report an accurate assay result.
[0068] In certain embodiments, 100BS streptavidin beads are used to pretreat a sample to bind anti-streptavidin interference and deplete anti-streptavidin interference until it falls below an assay blocking threshold (ABT) or a test interference threshold prior to a diagnostic test. In another embodiment, biotinylated 100BS streptavidin beads are used to pretreat a sample to bind anti-biotin interference and deplete anti-biotin interference until it falls below an assay blocking threshold (ABT) or a test interference threshold prior to a diagnostic test. In another embodiment, biotinylated 100BS streptavidin beads are used to pretreat a sample to simultaneously bind both anti-streptavidin interference and anti-biotin interference from the same sample and deplete anti-biotin interference until it falls below an assay blocking threshold (ABT) or a test interference threshold prior to a diagnostic test.
[0069] At present, there is no rapid and easy-to-use product solution for detecting, characterizing, and reducing biotin, antibiotin, and antistreptavidin interference in patient samples. In certain embodiments, streptavidin beads (Bead 1), 100BS streptavidin beads (Bead 2), and biotinylated 100BS streptavidin beads (Bead 3) are used systematically or sequentially to detect and determine which interference mechanism or mechanisms are present in the sample. Samples with suspected interference are tested neat (no beads added) as a control result. Three different aliquots of the sample are each treated with Bead 1 (aliquot 1), Bead 2 (aliquot 2), and Bead 3 (aliquot 3). The three pretreated aliquots are retested and the test results for each bead type are compared to the control test results (Table 1). If the control test results are similar to the test results from the pretreatment with Beads 1, 2, and 3, the likelihood of sample interference is low and may be determined to be absent. However, if the pretreatment result for Bead 1 is significantly different from the control result, the likelihood of biotin interference and / or antistreptavidin interference is high and sample interference may be determined to be present. If the pretreatment result for Bead 2 is significantly different from the control result, the likelihood of antistreptavidin interference is high and sample interference may be determined to be present. If the pretreatment result for Bead 3 is significantly different from the control result, the likelihood of antistreptavidin interference and / or antibiotin interference is high and sample interference may be determined to be present. If the pretreatment result for Bead 1 is significantly different from the control result, but the pretreatment results for Beads 2 and 3 are similar to the control, biotin interference may be determined to be present. If the pretreatment results for Beads 1 and 2 are similar to the control result, but the result for Bead 3 is significantly different from the control result, antibiotin interference may be determined to be present. If the pretreatment results for Beads 1, 2, and 3 are all significantly different from the control result, antistreptavidin interference may be determined to be present.
Table 1
[0070] The production of free (or soluble) biotin-saturated streptavidin (quenched streptavidin, QSAv) is generally similar to the production of biotin-saturated streptavidin-conjugated beads. Furthermore, streptavidin can be conjugated to additional moieties to function as a capture moiety or to block sites that can promote the aggregation of streptavidin. Such conjugation can be performed before or after quenching (except when the additional capture moiety is biotin, in which case it can only be performed after quenching). A molar ratio of biotin to streptavidin of approximately 7 - 8 is used, which is slightly higher than the 5:1 ratio used in the minimum saturation procedure for beads. This is because some of the biotin-binding sites on bead-conjugated streptavidin are sterically hindered, resulting in an effective ratio that is somewhat higher than the formal ratio.
[0071] QSAv is preferably mainly monomeric. In various embodiments, QSAv is at least 80, 90, 95, 97, 98, 99% monomeric, or any range bounded by those values. To ensure that the reagent is monomeric and remains monomeric and does not form aggregates, streptavidin can be blocked with a detergent or a polymeric blocking reagent. Blocking can include PEGylation. There are a variety of commercially available PEGylation reagents of various sizes and chemical modifications, such as those from ThermoFisher Scientific, Broadpharm, Quanta Biodesign, and Creative Pegworks. One example is NHS-ester-PEG(4)-OH. Other examples include TFP-(PEO)n-OH or TFP-(PEG)n-OH (Quanta Biodesign). These can covalently bind to any exposed lysine residues on streptavidin via the chemistry of the NHS-ester. Alternatively, TFP-(PEG)n-COOH or NHS-(PEG)n-COOH can bind to lysine residues through the chemistry of EDC. Many other alternatives will be well known to those skilled in the art. Preparation of monomeric QSAv can also be achieved by biotin quenching in a buffer containing a cosmotropic reagent such as urea, imidazole, trehalose, or others.
Example
[0072] The following non-limiting examples are provided for illustrative purposes only to facilitate a more complete understanding of representative embodiments currently contemplated. These examples should not be construed as limiting any of the embodiments described herein.
[0073] Example 1 Method for preparing biotinylated streptavidin-coated magnetic nanoparticles or biotinylated 100BS streptavidin beads. Magnetic carboxylic acid nanoparticles in the range of 550 - 600 nm were conjugated to streptavidin via covalent bonding using the chemical action of EDC (1-ethyl-3-(3-dimethylaminopropyl)carbodiimide). The bead surface was adjusted with stripping reagents (salts, detergents, low pH, and high pH) to remove passively adsorbed streptavidin, and the beads were blocked using detergents and polymer blocking reagents to reduce non-specific binding and promote monodispersity and colloidal stability of the nanoparticles. The total concentration of streptavidin covalently conjugated to the beads was determined to be 17.69 micrograms / milligram (μg / mg) using a modified micro BCA total protein assay. The final bead concentration was determined by weight measurement and adjusted to 10.0 milligrams / milliliter (mg / mL) of beads in PBS with 2 mM EDTA, pH 6.8.
[0074] A 10.0 mg / mL stock solution of D-biotin in PBS, pH 7.4 (Sigma, product number B4601-100MG, lot SLBS8478, molecular weight 244.31) was prepared by making a 100 mg / mL concentrated stock solution of D-biotin in DMSO (Baker, product number 9224-01, lot 0000217025), or by adding 10 mg of D-biotin to 100 μL of DMSO and mixing. Once the D-biotin was completely and homogeneously dissolved in DMSO, 900 μL of PBS, pH 7.4 was added and mixed to prepare 1.0 mL of a 90:10 (PBS:DMSO) 10.0 mg / mL D-biotin stock solution.
[0075] A total of 2.5 mL of streptavidin magnetic nanoparticles was aliquoted and dispensed into reaction vials. This vial corresponded to a total of 442.25 μg of streptavidin: [(25 mg of beads) × (17.69 μg of streptavidin / 1 mg of beads)]. A total of 442.25 μg of streptavidin corresponds to 0.00804 μM of streptavidin: [(442.25 μg of streptavidin) / (55,000 μg of streptavidin / 1 μM of streptavidin)].
[0076] 1,964.475 μg of D-biotin was added to 25 mg of streptavidin-conjugated magnetic particles with 17.69 μg of streptavidin per 1 mg of beads, or to 442.25 μg of streptavidin, to prepare a 1000-fold molar excess of D-biotin relative to the total moles of streptavidin: [(0.00804 μM × 1000) × (244.31 μg of biotin / μM)]. To add a 1000-fold molar excess of D-biotin to 0.00804 μmol of streptavidin, 200 μL of a 10.0 mg / mL stock solution of D-biotin, or 2,000 μg of D-biotin, was added to 25 mg of streptavidin magnetic nanoparticles with 17.69 μg of streptavidin per 1 mg of beads in PBS with 2 mM EDTA, pH 6.8. The streptavidin magnetic nanoparticles were incubated with D-biotin for 1 hour with mixing at room temperature to 100% saturate the streptavidin biotin-binding sites with biotin, preparing 100BS streptavidin beads.
[0077] 100BS streptavidin-beads were conjugated covalently to the biotin of a molar excess of D-biotin with a 100-fold molar excess of NHS-PEG 4 -biotin (Broadpharm, product number 20566, lot B93-039, molecular weight 588.7), or 500 μg of NHS-PEG 4 -biotin was added to 25 mg of streptavidin-conjugated magnetic particles with 17.69 μg of streptavidin per 1 mg of beads, or to 442.25 μg of streptavidin, or to 0.00804 μM of streptavidin. 5 mg of NHS-PEG 4 -biotin was added to 100 μL of DMSO and mixed to prepare a 50.0 mg / mL stock solution of NHS-PEG 4 -biotin in DMSO. 4- Add 10.0 μL of the biotin stock solution, along with a 1000-fold molar excess of D-biotin from the saturation step, to 25 mg of 100BS streptavidin-beads with 17.69 μg of streptavidin per 1 mg of beads in PBS with 2 mM EDTA, pH 6.8, and mix at room temperature for 1 hour to obtain a 100-fold molar excess of NHS-PEG 4 - biotin, or 473.315 μg of NHS-PEG 4 - biotin [(0.804 μM of NHS-PEG 4 - biotin) × 100] × (588.7 μg of biotin / μM] was added to the 100BS streptavidin beads. The biotinylated 100BS streptavidin-beads were washed 4 times with PBS at pH 7.4 to remove excess NHS-PEG 4 - biotin.
[0078] To confirm that the 100BS streptavidin-beads were successfully conjugated to biotin without any bead aggregation from streptavidin-mediated binding of conjugated biotin on different beads (i.e., bead cross-linking), the biotinylated 100BS streptavidin beads were analyzed by particle size measurement using an Anton Paar Litesizer 500 analyzer. The average size distribution was 883.9 nm (Figure 1).
[0079] To demonstrate that biotin was successfully conjugated to streptavidin on the 100BS streptavidin beads, a limited amount of native streptavidin was added to the biotinylated 100BS streptavidin beads to promote bead aggregation from streptavidin-mediated cross-linking of the beads. A total of 50 μg of streptavidin was added to 25 mg of biotinylated 100BS streptavidin beads and incubated at room temperature for 4 hours. The beads showed aggregation 30 minutes after the addition of streptavidin, with peaks at 1,441.3 nm and 6,641 nm, a polydispersity index of 173.3% (Figure 2A), and peaks at 1,512.6 nm and 14,536 nm, a polydispersity index of 242.8% (Figure 2B).
[0080] An anti-biotin conjugated monoclonal antibody that recognizes conjugated biotin with a similar affinity to streptavidin but recognizes free biotin with an affinity 1 million times lower than streptavidin, or an antibody that specifically binds to the biotin of a biotin conjugate and has a higher affinity for the biotin of the biotin conjugate than for free biotin was used to perform similar bead aggregation (WO2020 / 028776; VeraBind Biotin™, Veravas). The antibody was added to biotinylated 100BS streptavidin-beads and incubated overnight at room temperature. The beads showed aggregation with a peak at 2,148 nm and a polydispersity index of 316.2% (Figure 3).
[0081] Example 2 Method for depleting anti-biotin antibodies from a sample using biotinylated streptavidin-coated magnetic nanoparticles or biotinylated 100BS streptavidin-beads. To demonstrate the successful biotinylation of 100% biotin-saturated streptavidin-conjugated magnetic nanoparticles, or 100BS streptavidin-beads, freeze-dried mouse ascites containing a monoclonal anti-biotin antibody specific for conjugated biotin was purified using a Melon Gel purification kit (ThermoFisher, product number 45214), and ascites conditioning buffer (ThermoFisher, product number 45219, lot TB263120), and desalted in PBS at pH 7.2 using Zeba Spin Desalting Columns, 40K MWCO (ThermoFisher, product number 87770). The final concentration of the anti-biotin antibody was 0.205 mg / mL, and 50 μL of the anti-biotin antibody, or 10.25 μg of the anti-biotin antibody, was added to 950 μL of PBS at pH 7.4 in a glass HPLV vial to prepare a 10.25 μg / mL anti-biotin stock solution. 100 μL, 50 μL, 25 μL, and 10 μL of the anti-biotin stock solution were sequentially injected into a Phenomenex s4000 SEC HPLC column with a flow rate of 1.0 mL / min and a mobile phase of PBS at pH 7.4, and the peak area was determined for each concentration of the injected antibody to generate a calibration curve of peak area (Y-axis) versus antibody concentration (X-axis): y = 6.6466x + 21.4286, R 2 = 1.0000 (Figure 4A).
[0082] Next, 750 μL of 0.205 mg / mL anti-biotin antibody was pretreated with biotinylated 100BS streptavidin-beads as follows. 1. Take out the biotinylated 100BS streptavidin-bead reagent vial from the storage and vortex at medium speed for at least 10 seconds. 2. Place an empty 2 mL Sarstedt Micro tube into the VeraMag 400 (trademark) magnetic separator until the tube collar touches the magnet frame. 3. Dispense 750 μL of the well-mixed reagent or 7.5 mg of beads at 10.0 mg / mL into a 2 mL Sarstedt Micro tube. 4. Wait for at least 30 seconds and carefully aspirate and discard all the supernatant without disturbing the pellet of magnetic nanoparticles. 5. Dispense 750 μL of 0.205 mg / mL well-mixed anti-biotin antibody. 6. Cap the tube and vortex the sample at medium speed for at least 10 seconds. 7. Place the tube on a medium-speed rotary mixer and incubate at room temperature for 30 minutes. 8. Loosen the screw cap and place the tube into the VeraMag 400 until the tube collar touches the magnet frame. 9. Magnetically separate the nanoparticles from the sample for 5 minutes. 10. Carefully aspirate the sample and dispense it into a clean tube without disturbing the pellet of magnetic nanoparticles. If this step is performed carefully, all the sample can be aspirated. Note: If the magnetic nanoparticles are accidentally aspirated, simply return the mixture to the tube, cap the tube, and go back to step 9. 11. Now, the adjusted sample is ready for analysis. 12. Filter the sample using a 0.2 micron cellulose acetate syringe filter. The average protein loss using this filter was 16.5 μg). Inject 100 μL of the sample into a Phenomenex s4000 SEC HPLC column, and determine the peak area with a retention time of approximately 9.6 - 9.9 minutes at a flow rate of 1.0 mL / min and a mobile phase (50 mM potassium phosphate, 250 mM potassium chloride, pH 6.8). Based on the calibration curve equation, use the peak area of the antibody peak (y) to determine x (antibody μg / mL).
[0083] The peak area of 100 μL of the anti - biotin Ab sample is 1,384 (Figure 4B), and the concentration corresponding to this peak area on the calibration curve is 205 μg / mL (Figure 4A). The peak area of 100 μL of the pretreated and depleted anti - biotin sample is 318 (Figure 4C), and the concentration corresponding to this peak area on the calibration curve was 44.62 μg / mL (Figure 4A). Since the starting volume of the antibody pretreated with the depletion reagent was 750 μL, this corresponds to 33.465 μg of antibody [44.62 μg / mL×0.750 mL]. Since 16.5 μg of antibody was lost in a 0.2 - micron cellulose acetate syringe filter, the total remaining antibody after sample pretreatment was 49.965 μg of antibody [33.465 μg + 16.5 μg]. The starting amount of the pretreated anti - biotin antibody was 153.75 μg of antibody: [205 μg / mL×0.750 mL]. The percentage of anti - biotin antibody captured and depleted by biotinylated 100BS streptavidin - beads was 67.5%: [((153.75 μg - 49.965 μg) / 153.75 μg)×100%].
[0084] This study demonstrated that biotinylated 100BS streptavidin - beads can deplete 103.785 μg of antibody (153.75 μg - 49.965 μg). This corresponds to a binding capacity of 13.838 μg of anti - biotin antibody per 1 mg of biotinylated 100BS streptavidin - beads: [(103.785 μg of antibody) / (7.5 mg of beads)].
[0085] Example 3 Preparation of biotinylated 100BS streptavidin-beads using a low molar excess of biotin. The use of a 1000-fold molar excess of free biotin for biotin saturation of streptavidin-coated beads can lead to non-specific association of biotin with streptavidin or the beads. Even if successful in depleting anti-biotin and anti-streptavidin during use, non-specifically associated biotin can leach or dissociate from 100BS streptavidin-beads and cause biotin interference in the assay. Several approaches were investigated to remove or mitigate this non-specific biotin binding. This included saturating streptavidin prior to conjugation to magnetic nanoparticles, various washing procedures after saturation, use of lower molar excesses of biotin, and use of various biotin linker molar excesses. Ultimately, a combination of a low molar excess of biotin and specific washing conditions produced a product without issues of free biotin leaching.
[0086] After conjugating streptavidin to magnetic nanoparticles and prior to biotinylation, streptavidin beads were exposed to a 5-fold molar excess of free biotin (i.e., a 5:1 molar ratio of biotin:streptavidin or a 5:4 ratio of biotin:biotin binding sites). The saturated beads were then washed with water at 50 °C using sonication. (Since the conjugation of streptavidin to the beads leads to steric hindrance of some biotin binding sites, the effective ratio of biotin to biotin binding sites is somewhat higher.)
[0087] Biotinylation was performed with 4-fold, 25-fold, and 50-fold molar excesses of biotinylation reagent (biotin-PEG 4 -NHS linker). It was found that a 50-fold molar excess yielded optimal results.
[0088] The finished beads were tested for neutrality and shown not to cause interference themselves when the beads were used to pretreat serum samples according to the following protocol: 1. Remove the biotinylated 100BS streptavidin-bead reagent vial from the storage and vortex at medium speed for at least 10 seconds to mix well and resuspend the reagent. 2. Insert the reagent vial into the foaming vial holder. 3. Insert an empty 2 ml microtube (SARSTEDT order number 72.694) into the VeraMag (trademark) magnet (Veravas) until the rim of the tube touches the magnet frame. 4. Dispense 200 μL of the well - mixed reagent (beads) into the empty tube and separate the reagent on the magnet for more than 30 seconds to form a reagent pellet. 5. Carefully aspirate and discard all of the storage buffer supernatant (about 200 μL) without disturbing the reagent pellet. 6. Dispense 400 μL of well - mixed serum or plasma sample into the tube containing the reagent pellet. 7. Tightly screw on the tube's screw cap, remove the tube from the magnet, vortex at medium speed for at least 10 seconds to mix well, and resuspend the reagent in the sample. 8. Place the tube on a lab mixer at medium speed and incubate at room temperature for 10 minutes. 9. Loosen and remove the screw cap, and insert the tube into the magnet until the tube's color touches the magnet frame. 10. Magnetically separate the reagent for more than 4 minutes to form a reagent pellet. 11. Carefully aspirate the sample supernatant without disturbing the reagent pellet and dispense the sample into the test transport tube. Note: By performing this step carefully, all of the sample supernatant (about 400 μL) can be aspirated. If any of the reagent is accidentally aspirated, simply return the sample / reagent mixture to the tube and go back to step 10. 12. Thus, the sample is ready for testing.
[0089] Subsequently, in the Roche Elecsys TSH assay as an example of a sandwich immunoassay and the Roche Elecsys FT4 assay as an example of a competitive immunoassay, the pretreated samples were used (see Table 2). For all samples tested by both assays, there were no significant analytical or clinical differences in the results between the treated and untreated samples.
Table 2
[0090] Example 4 Preparation of a validation lot Three lots of beads were prepared as described in Example 3 for deceleration. That is, for saturation, the molar ratio of biotin to streptavidin was 5:1, a 50-fold molar excess of biotin-PEG 4 -NHS linker, and washing at 50 °C using sonication with streptavidin from different sources were used. One lot, FSAv, used fresh streptavidin. One lot, RSAv, used streptavidin recovered from a previous bead coating reaction. Additionally, another lot, MSAv, used a mixture of 80% recovered streptavidin and 20% fresh streptavidin. The streptavidin content of the three lots was 35 μg / mg beads for lot FSAv, 30 μg / mg beads for RSAv, and 19 μg / mg beads for MSAv. The three lots were then used in the validation tests described in Examples 5 - 8 below.
[0091] Conjugation of streptavidin to magnetic nanoparticles uses an excess amount of streptavidin. Unconsumed reagents can be recovered by filtration, desalting, and concentration rather than discarded. It has been found that streptavidin recovered in this way can be incorporated into functional products without affecting stability or performance.
[0092] Example 5 Particle size as an indicator of aggregation during manufacture As initial quality control, the size of the finished beads was measured and aggregation during production was checked. 5 μL of beads were mixed with 1 mL of diH2O in a disposable cuvette and, after a short vortex (5 - 10 seconds), mixing (on a mixer for 10 minutes), and sonication (if used) for 30 - 60 seconds, were read by an Anton Paar Litesizer™ 100 particle size analyzer. None of the three lots showed aggregation from the product generated before and after sonication (Tables 3 and 4). On average, the aggregated polydispersity is larger than the monomeric polydispersity.
Table 3
Table 4
[0093] Example 6 Biotin leaching test To test for potentially problematic levels of biotin leaching, biotin-saturated, conjugated streptavidin-coated beads (biotinylated 100BS streptavidin beads) were suspended in serum at a biotin concentration of less than 100 pg / ml. 400 μL of serum was treated with 0.5 mg of beads (200 μL - 2.5 mg / mL) for 10 minutes at room temperature on a mixer and separated magnetically according to the following protocol. 1. Remove the MSAv, FSAv, or RSAv reagent vial of the biotinylated 100BS streptavidin-bead lot from stock, vortex at medium speed for at least 10 seconds to mix well, and resuspend the reagent. 2. Insert the reagent vial into the foaming vial holder. 3. Insert an empty 2 ml microtube (SARSTEDT order number 72.694) into the VeraMag magnet until the tube color touches the magnet frame. 4. Dispense 200 μL of the well-mixed reagent (beads) into the empty tube and separate the reagent on the magnet for longer than 30 seconds to form a reagent pellet. 5. Without disturbing the reagent pellet, carefully aspirate all of the storage buffer supernatant (about 200 μL) and discard it. 6. Dispense 400 μL of well - mixed serum or plasma sample into the tube containing the reagent pellet. 7. Tightly screw the tube cap, remove the tube from the magnet, and vortex at medium speed for at least 10 seconds to mix well and resuspend the reagent in the sample. 8. Place the tube on a lab - mixer at medium speed and incubate at room temperature for 10 minutes. 9. Loosen and remove the screw cap, and insert the tube into the magnet until the color of the tube touches the magnet frame. 10. Magnetically separate the reagent for more than 4 minutes to form the reagent pellet. 11. Without disturbing the reagent pellet, carefully aspirate the sample supernatant and dispense the sample into the test transport tube. Note: By performing this step carefully, all of the sample supernatant (about 400 μL) can be aspirated. If any of the reagent is accidentally aspirated, simply return the sample / reagent mixture to the tube and go back to step 10. 12. The sample is now ready for testing.
[0094] The treated serum was tested with the IDK BIOTIN ELISA assay (Immundiagnostik AG). The IDK BIOTIN ELISA is a competitive immunoassay where biotin in the sample decreases the generated signal. The concentration of biotin is determined by comparing to a calibration curve. A calibration curve was created using each of three test lots. In all cases, biotin was detected at levels below 1200 pg / ml. This indicates that any leaching of biotin from the beads was at a level that did not cause heterophilic interference in a standard immunoassay (Table 5).
Table 5
[0095] Example 7 HPLC depletion assay Three lots of biotin-saturated, conjugated streptavidin-coated beads were used in depletion assays to evaluate their ability to specifically remove anti-streptavidin interference and anti-biotin interference, but not other interferences. For this purpose, a series of four HPLC depletion tests were performed. 1) HPLC depletion assay using affinity-purified goat IgG and affinity-purified goat IgG conjugated to biotin to evaluate the specificity of the product for anti-SAv antibody and anti-Bt antibody only. 2) HPLC depletion assay using anti-streptavidin antibody to quantify the binding ability of the reagent. 3) Perform an HPLC depletion assay using anti-biotin antibody to quantify the binding ability of the reagent. 4) A) HPLC depletion assay using a mixture of anti-biotin antibody and anti-streptavidin antibody, and B) anti-streptavidin antibody and affinity-purified goat IgG to demonstrate the multiplexing ability and specificity of the reagent.
[0096] The concentrations of various antibodies (Ab) and antibody-biotin (Ab-Bt) conjugates in phosphate-buffered saline (PBS) at pH 7.4 were determined. For each sample, 200 μl of a biotin-saturated, conjugated streptavidin-coated bead suspension (2.5 mg / ml) was dispensed into a tube, magnetically separated, and the storage buffer was removed. 400 μL of each Ab or Ab-Bt conjugate was added to the bead-containing tube, vortexed, and incubated on a mixer for 10 minutes. The beads were magnetically separated again, the supernatant of the treated sample was aspirated, and loaded into a microtube insert of an HPLC tube for size exclusion chromatography (SEC) analysis. The detailed protocol for the pretreatment was as follows: 1. Remove the MSAv, FSAv, or RSAv reagent vial of the biotinylated 100BS streptavidin-bead lot from stock, vortex at medium speed for at least 10 seconds to mix well, and resuspend the reagent. 2. Insert the reagent vial into the foaming vial holder. 3. Insert an empty 2 ml microtube (SARSTEDT order number 72.694) into the VeraMag magnet until the tube color touches the magnet frame. 4. Dispense 200 μL of the well - mixed reagent (beads) into the empty tube, and separate the reagent on the magnet for more than 30 seconds to form a reagent pellet. 5. Carefully aspirate and discard all of the storage buffer supernatant (about 200 μL) without disturbing the reagent pellet. 6. Dispense 400 μL of the well - mixed serum or plasma sample into the tube containing the reagent pellet. 7. Tightly screw on the tube's screw cap, remove the tube from the magnet, and vortex at medium speed for at least 10 seconds to mix well and resuspend the reagent in the sample. 8. Place the tube on a lab mixer at medium speed and incubate at room temperature for 10 minutes. 9. Loosen and remove the screw cap, and insert the tube into the magnet until the tube color touches the magnet frame. 10. Magnetically separate the reagent for more than 4 minutes to form a reagent pellet. 11. Carefully aspirate the sample supernatant without disturbing the reagent pellet and dispense the sample into the test transport tube. Note: By performing this step carefully, all of the sample supernatant (about 400 μL) can be aspirated. If any of the reagent is accidentally aspirated, simply return the sample / reagent mixture to the tube and go back to step 10. 12. The sample is now ready for testing.
[0097] Untreated antibody was also subjected to SEC as a control. The SEC buffer was 50 mM potassium phosphate, 250 mM potassium chloride, pH 6.8, and was pumped in at 1 ml / min for 20 minutes using a 5 μg / 100 μl injection on a G4000 column 7.8 mm×30 cm. Absorbance at 220 nm and 280 nm was monitored, and A280 was used for peak analysis. The results are shown in Table 6.
Table 6
[0098] Since the beads are intended to be neutral with respect to antibodies that are not specific for anti-biotin or anti-streptavidin, affinity-purified goat IgG was used as a control to establish background depletion. All three lots showed minimal or no binding of this control (92.56% - 96.78% of the antibody remained after treatment. Figure 5A shows the results for the MSAv lot).
[0099] Again, even if biotinylated, since the beads are intended to be neutral with respect to antibodies that are not specific for anti-biotin or anti-streptavidin, affinity-purified goat IgG conjugated to biotin was used as an additional control to establish background depletion. All three lots showed minimal or no binding of this control (98.91% - 100% of the antibody remained after treatment. Figure 5B shows the results for the MSAv lot).
[0100] All three lots showed depletion of more than 10 μg per mg of beads for the anti-biotin antibody (depletions of 12, 34.4, and 21 μg / mg; see Table 6; Figure 5C shows the results for the MSAv lot). All three lots showed depletion of more than 20 μg per mg of beads for the anti-SAv antibody (depletions of 31, 33.5, and 27.6 μg / mg; see Table 6; an exemplary profile is shown in Figure 5D. This figure shows the results for the MSAv lot). A mixture of anti-streptavidin antibody and anti-biotin antibody was tested using beads from an MSAv lot, demonstrating the multiplexing ability of biotin-saturated, conjugated streptavidin-coated beads. Also, a mixture of anti-streptavidin and AP goat IgG antibody was tested to demonstrate the specificity of binding by the reagent. The data show that biotin-saturated, conjugated streptavidin-coated beads deplete both anti-streptavidin antibody and anti-biotin antibody when present tandemly (19.1 μg out of 23.4 μg present was depleted), and the product specifically removes only the anti-streptavidin antibody when mixed with AP goat IgG (10.9 μg out of 23.8 μg present was depleted). Previous data showed no binding of individual AP goat IgG (97% of the Ab was still present after treatment), so it can be reasonably inferred that depletion of approximately half (46%) of the mixture indicates that only the anti-streptavidin Ab was depleted.
[0101] Example 8 Effect of processing on analyte detection The neutrality of biotin-saturated, conjugated streptavidin-coated beads (biotinylated 100BS streptavidin beads) was tested in a commercial assay for serum parathyroid hormone. The DRG PTH Intact ELISA (DRG International, Part Number EIA3645) is a sandwich ELISA assay that uses two different goat anti-PTH polyclonal antibodies that recognize distinct portions of the hormone. One of the antibodies is biotinylated and functions as the capture reagent, and the other antibody is conjugated to horseradish peroxidase and functions as the detection reagent.
[0102] Each 400 μl of two serum samples (QC1 and QC3) was processed on a mixer at room temperature for 10 minutes using 0.5 mg of beads (200 ul, 2.5 mg / mL) according to the following protocol and magnetically separated. 1. Remove the SAv, FSAv, or RSAv reagent vial of biotinylated 100BS streptavidin-beads lot from stock, vortex at medium speed for at least 10 seconds to mix well, and resuspend the reagent. 2. Insert the reagent vial into the foaming vial holder. 3. Insert an empty 2 ml microtube (SARSTEDT order number 72.694) into the VeraMag magnet until the tube color touches the magnet frame. 4. Dispense 200 μL of the well-mixed reagent (beads) into the empty tube, separate the reagent on the magnet for more than 30 seconds to form a reagent pellet. 5. Carefully aspirate and discard all of the storage buffer supernatant (about 200 μL) without disturbing the reagent pellet. 6. Dispense 400 μL of well-mixed serum or plasma sample into the tube containing the reagent pellet. 7. Tightly screw on the tube cap, remove the tube from the magnet, vortex at medium speed for at least 10 seconds to mix well, and resuspend the reagent in the sample. 8. Place the tube on a lab mixer at medium speed and incubate at room temperature for 10 minutes. 9. Loosen and remove the screw cap, insert the tube into the magnet until the tube color touches the magnet frame. 10. Magnetically separate the reagent for more than 4 minutes to form a reagent pellet. 11. Carefully aspirate the sample supernatant without disturbing the reagent pellet and dispense the sample into the test transport tube. Note: By performing this step carefully, all of the sample supernatant (about 400 μL) can be aspirated. If any of the reagent is accidentally aspirated, simply return the sample / reagent mixture to the tube and go back to step 10. 12. Thus, the sample is ready for testing.
[0103] Next, the processed sera were tested in the DRG PTH ELISA assay. QC1 is an in - house QC sample containing less than 100 pg / mL biotin (which does not affect the mechanism of the PTH assay) and approximately 190 pg / mL PTH. QC3 is an in - house QC sample containing approximately 250,000 pg biotin / mL (which affects the mechanism of the PTH assay - the assay gives extremely low results) and approximately 190 pg / mL PTH. The QC1 sera processed in each of the different lots showed no significant deviation in the PTH results (100.6, 101.2, and 106.1% detection), and as predicted from the fact that 100BS streptavidin beads do not bind free biotin, all the QC3 samples gave extremely low results (Table 7). These data demonstrate the bead neutrality of the 100BS streptavidin beads.
Table 7
[0104] The analyte detection after treatment of samples containing interfering substances of anti - streptavidin antibody and anti - biotin antibody was determined. It was determined by adding affinity - purified anti - streptavidin antibody and anti - biotin goat antibody to serum QC1 and comparing the analyte detection results from the treated and untreated samples.
[0105] Four - hundred - microliter aliquots of each serum sample (QC1 and QC1 with 16.5 μg / mL anti - biotin antibody) were treated on a mixer at room temperature for 10 minutes using various amounts of beads (100 - 400 μl, 2.5 mg / mL) from all 3 lots, magnetically separated, and the processed sera were tested in the DRG PTH ELISA assay. QC1 is an in - house QC sample containing less than 100 pg / mL biotin (which does not affect the mechanism of the PTH assay) and approximately 190 pg / mL PTH. The concentration of anti - biotin antibody added to QC1 interfered with the PTH assay mechanism and resulted in extremely decreased results.
[0106] The MSAv beads successfully depleted all anti-Bt antibodies (anti-Bt Abys) and were able to restore the results of corrected PTH at 1 mg of beads per 200 μl of sample (16.5 μg / mL anti-Bt Aby concentration). FSAv and RSAv were able to achieve the same results with far less amounts: 0.25 mg for FSAv and 0.375 mg for RSAv. The QC1 samples to which anti-Bt Aby was added and which were not treated with biotinylated 100BS streptavidin-beads had extremely low results, only 2.7% of the control, as expected (Tables 8 and 9). The low capacity of the MSAv lot is consistent with the results observed in Example 7 (above).
Table 8
Table 9
[0107] Similarly, 200 μl aliquots of each serum sample (QC1, and QC1 samples with anti-streptavidin Aby (anti-SAv Aby) added at 16.5 μg / mL, or an anti-SAv Aby / anti-Bt Aby multiplex mixture at 16.5 μg / mL and 8.25 μg / mL respectively) were treated with 100 μl of 2.5 mg / mL beads for 10 minutes at room temperature on a mixer, magnetically separated, and the treated sera were tested in the DRG PTH ELISA assay. As described above, QC1 is an in-laboratory QC sample containing less than 100 pg / mL of biotin (which does not affect the mechanism of the PTH assay) and approximately 190 pg / mL of PTH. Anti-SAv Aby and anti-Bt Aby interfere with the PTH assay mechanism and result in extremely low results.
[0108] At the concentration used (16.5 μg / mL), anti-SAv Abys produced extremely low results as expected (29% of the baseline). The same was true for the multiplex mixture (21% of the baseline). The beads of lot RSAv were successful in depleting anti-SAv Abys and began to recover PTH detection with 0.25 mg of beads per 200 μl of sample, able to yield reading results up to 82% of the baseline value. By increasing the amount of beads used in the treatment to 0.5 mg per 200 μl of the sample, the value recovered to 104% of the baseline. With 0.25 mg of beads per 200 μl of the sample, the beads of lot FSAv recovered the PTH level to 91% of the baseline. With 0.375 mg of beads per 200 μl of the sample, the beads of lot MSAv recovered the PTH value to 92% of the baseline. All lots were able to restore the corrected PTH results with 0.5 mg of beads (RSAv - 104%, FSAv - 101%, MSAv 100%) (Table 10).
Table 10
[0109] An overview of the results of the above PTH detection experiment using lot MSAv is shown in Figure 6. Biotinylated 100BS streptavidin-beads had no effect when no interfering substances were used or when biotin was the interfering substance, but were effective in removing anti-biotin interfering substances and anti-streptavidin interfering substances, either individually or mixed together.
[0110] Specifically, in the bar group at the left end of Figure 6 labeled "none", there was no interfering substance added to the interfering substance-added sample. That is, it was a retest of the reference sample, and the detected PTH concentration had a difference of only -0.1%. When the reference sample was processed with biotin-saturated and conjugated streptavidin-coated beads without any interference (none), it differed from the reference sample by only +1.3% and from the reference sample retest by only +1.4% (without interference addition). These results are good in the accuracy profile of this PTH ELISA, indicating the neutrality of the reagent, and demonstrating that the sample processing did not introduce any dilution effect or matrix effect. Biotin addition caused significant interference in this PTH ELISA assay, resulting in an 87% decrease in detection. When the biotin-added sample was processed with beads, the result did not change significantly, with a difference of only -2.3% and 88% lower than the reference result. This result was predicted because biotinylated 100BS streptavidin-beads do not bind free biotin and do not mitigate this interference mechanism. Anti-Bt Aby addition caused significant interference in this PTH ELISA assay, resulting in a 97% decrease in detection. When the anti-Bt Aby addition was processed, the result changed significantly, differing by +3,546%, but the difference from the reference result was only -1.5%. This result was predicted because biotinylated 100BS streptavidin-beads are designed to bind and deplete anti-biotin interference and report an accurate result similar to the reference result without anti-biotin interference. Anti-SAv Aby addition also caused significant interference in this PTH ELISA assay, resulting in a 74% decrease in detection. When the anti-SAv Aby addition was processed, the result changed significantly, differing by +253%, but the difference from the reference result was only -8.2%. This result was predicted because biotinylated 100BS streptavidin-beads are designed to bind and deplete anti-streptavidin interference and report an accurate result similar to the reference result without anti-SAv Aby interference.Finally, the addition of a 1:1 mixture of anti-SAv Aby and anti-Bt Aby caused significant interference in this PTH ELISA assay, resulting in an 81% decrease in detection. When treated with anti-SAv Aby and anti-Bt Aby addition, the results changed significantly and were +379% different, but the difference from the reference result was only -9.9%. Even with these results, it is within the accuracy profile of this PTH ELISA. These results are also predicted from the fact that biotinylated 100BS streptavidin-beads are designed to bind and deplete both anti-biotin and anti-streptavidin interferences and report accurate results similar to the reference results without anti-biotin and anti-streptavidin interferences. These data also demonstrate the ability of biotinylated 100BS streptavidin-beads to bind and deplete the interference mechanisms of both samples of the same sample simultaneously.
[0111] Example 9 Biotin saturation of soluble streptavidin Prepare a solution of diluted streptavidin (SAv) (or modified SAv or blocked SAv) in Tris-buffered saline, pH 8.5 (TBS) at approximately 200 μg SAv / mL. A TBS dilution solution of biotin is also prepared at approximately 0.50 - 1.00 μg biotin / mL. The two solutions are metered together and pumped through a silicon tube (e.g., PN 96440-13 (Cole Parmer)) that joins at a Y-connector (e.g., Masterflex PN 30614-08 (Cole Parmer)) and mixed inline by mixing in an inline mixer (e.g., PPN HT-40-3.18-12-PP (StaMixCo)) in the discharge tube immediately (Figure 7). The SAv solution may be pumped at 2 mL / min, and the biotin solution may be pumped at 18 mL / min, for example, using a peristaltic pump (e.g., Masterflex EZload2 model 07522-20 (Cole Parmer)). The solution containing biotin and streptavidin is mixed for 30 - 120 minutes.
[0112] Other concentrations of biotin and SAv, other buffer systems, and other pump speeds may be used, but the ratio of biotin concentration to SAv concentration and the metered addition ratio must be maintained. The 9-volume biotin solution must contain 7.4 moles of biotin per mole of streptavidin in the SAv solution. Note that the ratio of biotin to streptavidin is slightly higher than that used in the minimum saturation procedure of bead-conjugated SAv. Assuming the molecular weight of streptavidin is 52000, a 300 mL solution of 200 μg / mL SAv contains 1.1538 moles of streptavidin. Assuming the molecular weight of biotin is 244.31, 8.53072 μmol of biotin (a molar ratio of 7.4:1) is 2084 μg of biotin, and as a result, at 9 volumes the biotin concentration is 772 ng / mL.
[0113] To remove unbound biotin and non-specifically bound biotin, dialysis filtration and washing were performed on biotin-saturated streptavidin. A water bath was filled with purified water and heated to 50 °C. A second water bath was filled with a buffer of 10 mM Tris, 50 - 150 mM NaCl and heated to 50 °C. (Alternatively, this buffer may contain 0.01 - 1% w / v TWEEN® 20 or other surfactant). A storage unit containing biotin-saturated streptavidin was placed in the first water bath. Tubes were attached to the in-line flow ports (upper and lower) and one side port using a hollow fiber filter such as a MiniKros Sampler Hollow Fiber Filter with a molecular weight cut-off of 10 kD (Repligen; PN S04-E010-05-N; mPes; 0.5 mm). The second side port was capped. The tube at the side port led the filtrate to a waste liquid container. The tube led from the storage unit passed through a peristaltic pump and advanced to the hollow fiber filter. The tube led from the in-line flow discharge port returned the retentate to the storage unit (Figure 8). When the water bath and the storage unit reached 50 °C, the peristaltic pump was turned on, the retentate tube was clamped to generate back pressure for filtration, the volume of the biotin-saturated streptavidin solution was decreased, and the protein was concentrated. The flow rate of the retentate was about 360 ml / min and the flow rate of the filtrate was about 95 ml / min. When the storage unit reached about 15% (or less) of the original volume, buffer from the second water bath was added to the storage unit to restore the original volume. (Samples for quality control were taken immediately before volume restoration). Filtration and volume restoration were repeated at least 5 times in total. Additional washing cycles may be added as needed. After the final volume restoration, the retentate was concentrated to about 10% of the original volume (other volumes may be used as needed). The free biotin in the final retentate must be less than 1200 pg / ml. The concentrated biotin-saturated streptavidin was filtered through a 0.2 μm filter.
[0114] Free biotin in the presence of solubilized streptavidin is regarded as evidence of the completion of the biotin quenching process. However, since free biotin itself may cause interference, free biotin is not desirable in blocking reagents that block streptavidin and other interferents and needs to be removed. The holding solution after each wash and the final holding solution (double) were assayed for free biotin content using an ELISA biotin assay (Immundiagnostik, PN KR8141), and the results shown in Table 11 were obtained.
Table 11
[0115] The final holding solution contained less than 700 pg / mL of free biotin and was substantially below the requirement of less than 1200 pg / mL. The final holding solution had a concentration of 201 μg of streptavidin / mL such that it contained approximately 3.16 - 3.33 pg of free biotin / μg of streptavidin.
[0116] An additional step may be added to remove incompletely quenched streptavidin. 2-Iminobiotin conjugated to agarose (Sigma Aldrich PN I4507-5ML) can be used for this purpose. 2-Iminobiotin binds reversibly to SAv under alkaline conditions. The binding is strongest at pH 10 - 11. SAv is released under acidic conditions such as pH 4.0. SAv that has already been quenched with biotin should not bind. Thus, the flow-through of quenched SAv from a column of alkaline 2-iminobiotin-agarose should contain only SAv quenched with biotin. SAv not quenched with biotin should adhere to the column. The column can be regenerated using a pH 4 buffer and then reused.
[0117] Example 10 Removal of goat anti-mouse antibodies using streptavidin beads conjugated to mouse IgG Magnetic nanoparticles (beads) with a diameter of 500-600 nm were coated with streptavidin. Two affinity-purified mouse IgG preparations were covalently conjugated with NHS ester-Peg(4)-Biotin to be biotinylated. Mouse IgG #1 was polyclonal non-specific mouse IgG. Mouse IgG #2 was monoclonal mouse IgG. When the beads were exposed to biotinylated mouse IgG, approximately 30 μg of IgG adhered to each 1 mg of the beads. The beads were prepared using only polyclonal mouse IgG, only monoclonal mouse IgG, and a mixture of the two mouse IgG preparations. These mouse antibodies function as a capture moiety for any anti-mouse IgG antibody to which they are exposed, either by specific affinity purification or heterophilia. Then, these mouse IgG-conjugated streptavidin beads were used to wash a sample (in this case, buffer) to which an affinity-purified goat anti-mouse antibody (Lampire Biological Laboratories) was added. Then, aliquots of the sample were analyzed by HPLC size exclusion chromatography for IgG content.
[0118] A concern regarding the use of biotinylation to anchor the capture reagent onto streptavidin is that, during the course of the washing procedure, the affinity of biotin may be lower than that of free biotin to the extent that the capture reagent dissociates from streptavidin. To check this, the washing procedure was carried out as normal and in the presence of 20 μg / mL of free biotin (more than 200-fold molar excess over streptavidin). If the biotinylated IgG dissociates from the streptavidin-coated beads, it cannot recombine in the presence of excess free biotin, and as a result, the amount of goat anti-mouse antibody removed by the beads decreases. Alternatively, if the dissociation of biotinylated IgG does not occur to a significant extent, the amount of goat anti-mouse IgG will not change significantly between samples with and without free biotin.
[0119] Specifically, one aliquot of each of three mouse IgG-conjugated streptavidin beads (including IgG#1, IgG#2, and a mixture of the two) was magnetically separated from the storage buffer (TBS) and mixed with TBS containing 20 μg / ml biotin. Goat anti-mouse IgG was diluted to 200 μg / mL in a) TBS and b) TBS containing 20 μg / ml biotin. Two aliquots of each of the three mouse IgG-conjugated streptavidin beads, one with biotin exposure and the other without biotin exposure, were magnetically separated from their respective buffers. Using 2.5 mg of beads per mL of goat anti-mouse IgG, goat anti-mouse IgG in TBS was added to the beads without biotin exposure, and goat anti-mouse IgG in TBS containing 20 μg / ml biotin was added to the biotin-exposed beads. These mixtures were vortexed for 10 seconds to suspend the beads and mixed overnight. The resulting mixtures had the beads magnetically separated, and then the supernatant samples were analyzed by HPLC-SEC using the area under the curve of the absorbance at 280 nm of the peak corresponding to goat IgG. The results are shown in Table 12.
Table 12
[0120] These data demonstrated that mouse IgG-conjugated streptavidin beads can remove 26.0 - 60.1 μg of anti-mouse antibody per mg of beads. These data further demonstrated that the attachment of the biotinylated capture reagent (mouse IgG) is stable under the conditions of the washing procedure even in the presence of a large excess of free biotin. Finally, these data demonstrated that these procedures are effective with polyclonal and monoclonal antibodies and the capture moiety which is a mixture of the two.
[0121] Example 11. Removal of biotin using streptavidin beads conjugated to mouse IgG The three mouse IgG-conjugated streptavidin bead preparations (polyclonal mouse IgG, monoclonal mouse IgG, and a mixture of polyclonal mouse IgG and monoclonal mouse IgG) described above in Example 10 were tested for their ability to remove free biotin from samples. Using essentially the same protocol as described above, 0.75 mg of beads were mixed with 200 μL of QC3, an in-house QC sample containing approximately 250,000 pg biotin / mL and 50 ng biotin, incubated for 10 minutes, magnetically separated for 5 minutes, and the sample supernatant was collected. The treated samples were tested with the IDK BIOTIN ELISA assay (Immundiagnostik AG, see Example 6). All three bead preparations were able to remove at least 49.7 ng of biotin from 0.200 mL of QC3 (a total of 50 ng of biotin) at 250 ng biotin / mL under these conditions, or 66.3 ng biotin / mg beads, and were able to reduce the biotin concentration from 250,000 pg / mL to less than 300 pg / mL.
[0122] In summary, while the aspects of this specification are understood to be emphasized by reference to specific embodiments, those skilled in the art will readily recognize that these disclosed embodiments are merely illustrative of the principles of the subject matter disclosed herein. Accordingly, it is understood that the disclosed subject matter is in no way limited to the specific methodologies, protocols, and / or reagents, etc. described herein. Thus, various modifications or alterations, or alternative configurations, in relation to the subject matter of this disclosure can be made in accordance with the teachings herein without departing from the spirit of this specification. Finally, the terminology used herein is for the purpose of describing particular embodiments only and is not intended to limit the scope of the invention, which is defined only by the claims. Accordingly, the invention is not limited to being precisely as illustrated and described.
[0123] For the purpose of carrying out the present invention, specific embodiments of the present invention, including the best mode known to the inventors, are described herein. Of course, variations of these described embodiments will be apparent to those skilled in the art upon reading the foregoing description. The inventors expect those skilled in the art to adopt such variations as appropriate, and the inventors intend that the present invention be practiced in ways other than those specifically described herein. Accordingly, the present invention includes all modifications and equivalents of the subject matter recited in the claims appended hereto as permitted by applicable law. Further, unless otherwise stated herein or otherwise clearly contradicted by context, any combination of the above-described embodiments is included in the present invention in all possible variations.
[0124] Groupings of alternative embodiments, elements, or steps of the present invention should not be construed as limitations. The components of each group may be referred to and claimed individually or in any combination with other components of the groups disclosed herein. It is anticipated that one or more of the components of a group may be included in or excluded from the group for reasons of convenience and / or patentability. If any such inclusion or exclusion occurs, the present specification is considered to contain the group as modified and thus to satisfy the written description of all of the Markush groups used in the appended claims.
[0125] Unless otherwise indicated, all numbers expressing characteristics, items, quantities, parameters, properties, periods, etc. used in this specification and the claims are to be understood as being modified in all instances by the term "about." As used herein, the term "about" means that the characteristic, item, quantity, parameter, property, or period so modified encompasses a range of plus or minus 10 percent above and below the value of the stated characteristic, item, quantity, parameter, property, or period. Accordingly, unless the contrary is indicated, the numerical parameters set forth in the specification and attached claims are approximate values that may vary. At a minimum, each numerical indication is to be construed in light of the reported number of significant digits and in the light of ordinary rounding conventions, not as a limitation on the application of the doctrine of equivalents to the claims. Although the numerical ranges and values setting forth the broad scope of the invention are approximations, the numerical ranges and values set forth in the specific examples are reported as precisely as possible. Nevertheless, any numerical range or value inherently contains certain errors resulting necessarily from the standard deviation found in the respective testing measurements. The recitation of numerical ranges herein is merely intended to serve as a simple method of referring individually to each separate numerical value falling within the range. Unless otherwise indicated herein, each individual numerical value within a numerical range is incorporated herein as if it were individually recited herein.
[0126] Unless the context indicates otherwise, or unless the context clearly contradicts, the use of the terms "a," "an," "the," and similar referential terms in the context of the description of the present invention (particularly in the context of the following claims) is considered to encompass both the singular and the plural. Unless the context indicates otherwise, or unless the context clearly contradicts, all methods described herein can be performed in any suitable order. The use of any and all examples presented herein, or of exemplary language (such as "for example") is merely intended to illustrate the present invention in more detail and does not give a limitation to the scope of the present invention as claimed, unless otherwise claimed. The language of the specification of the present invention should not be construed as indicating any non-claimed element essential to the practice of the present invention.
[0127] The specific embodiments disclosed herein may be further limited in the claims using the transitional terms "comprising," "consisting of," or "consisting essentially of." When used in the claims, the transitional term "comprising" excludes any element, step, or ingredient not specified in the claims, whether filed or added pursuant to amendment. The transitional term "consisting essentially of" limits the claim to the specified material or step and those that do not substantially affect the basic and novel characteristics. Embodiments of the invention so claimed are described herein, either essentially or explicitly, and enabled.
[0128] All patents, patent publications, and other publications referenced and identified in this specification are hereby incorporated by reference in their entirety, individually and explicitly, for the purpose of describing and disclosing, for example, the compositions and methodologies described in such publications that may be used in connection with the present invention. These publications are presented only with respect to their disclosure prior to the filing date of the present application. No admission is made by the inventors that they are not entitled to antedate such disclosure by virtue of prior invention or for any other reason. Any opinion as to the date or representation as to the contents of these documents is based on the information available to the applicant and does not constitute any admission as to the accuracy of the date or contents of these documents. References: 1. Society to Improve Diagnosis in Medicine (SIDM); https: / / betterdiagnosis.org / 2. 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Claims
1. A method for reducing interference from a liquid biological sample, comprising: a) combining the sample with particles comprising streptavidin to provide a mixture; b) mixing the mixture to promote binding of the interference to the streptavidin, wherein the streptavidin is conjugated with an additional non-biotin capture moiety, such that interference by substances binding to the capture moiety is also removed or reduced, and the biotin binding sites on the streptavidin are saturated with biotin, such that interference by anti-streptavidin is removed or reduced; c) separating the particles from the sample; thereby removing or reducing the amount of the interference.
2. The method of claim 1, wherein the streptavidin is biotinylated, such that interference by anti-streptavidin, anti-biotin, or both is removed or reduced.
3. The method of claim 1 or 2, wherein the particles are magnetic.
4. The method of claim 3, wherein separating the particles from the sample comprises exposing the mixture to a magnet and recovering the liquid sample.
5. The method of claim 1 or 2, wherein the biotinylation or conjugation is covalent.
6. The method of claim 5, wherein the biotinylation comprises use of an ester-derivatized biotin.
7. The method of claim 6, wherein the ester-derivatized biotin is selected from the group consisting of NHS-biotin, NHS-LC-biotin, NHS-LC-LC-biotin, TFP-LC-biotin, NHS-chromalink-biotin, NHS-PEO4-biotin, TFP-(PEO)n-biotin, and NHS-(PEO)n-biotin.
8. The method of claim 1 or 2, wherein the biotinylation or conjugation is mediated by a biotin linker non-covalently bound to the biotin binding sites on the streptavidin.
9. The method of claim 3 or 4, wherein the biotin-saturated streptavidin (QSAv) formed when the biotin binding sites on the streptavidin are saturated with biotin is mainly monomeric.
10. The method according to any one of claims 1 to 6, wherein particles comprising biotin-saturated streptavidin (QSAv) or streptavidin formed when the biotin-binding sites on the streptavidin are saturated with biotin are blocked.
11. The method according to claim 7, wherein particles comprising biotin-saturated streptavidin (QSAv) or streptavidin formed when the biotin-binding sites on the streptavidin are saturated with biotin are blocked by PEGylation.
12. The method according to claim 1, wherein the additional capture moiety blocks, removes, or reduces additional heteroaffinity interference.
13. The method according to claim 12, wherein the additional capture moiety is a heterologous antibody and the heteroaffinity interference is human anti-animal antibody interference.
14. The method according to claim 1, wherein the additional capture moiety blocks, removes, or reduces cross-reactivity interference.
15. The method according to claim 12, wherein the additional capture moiety is a viral antigen or an antigenic portion thereof.
16. The method according to claim 15, wherein the viral antigen or an antigenic portion thereof comprises a coronavirus epitope from a coronavirus other than SARS-CoV-2.
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