Mycobacterium tuberculosis rpoB gene mutation detection method and kit based on CRISPR-Cas12a technology

By designing a specific crRNA binding with Cas12a enzyme and fluorescent probe, the problems of complexity, time consumption and insufficient sensitivity of traditional detection methods are solved, enabling rapid, sensitive and specific detection of Mycobacterium tuberculosis rpoB gene mutations, which is suitable for detecting low-abundance mutations in mixed samples.

CN120989269APending Publication Date: 2025-11-21WUXI NO 5 PEOPLES HOSPITAL +1
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Patent Information

Application Number
CN202511150785.5
Authority / Receiving Office
CN · China
Patent Type
Applications(China)
Current Assignee / Owner
Filing Date
2025-08-18
Publication Date
2025-11-21

AI Technical Summary

Technical Problem

Traditional detection methods for Mycobacterium tuberculosis rpoB gene mutations are complex, time-consuming, and lack sensitivity in mixed samples. CRISPR-Cas12a technology has limitations in crRNA design optimization and PAM sequence restrictions in the detection of drug resistance mutations in Mycobacterium tuberculosis, making it difficult to achieve high specificity and high sensitivity.

Method used

The design incorporates specific crRNAs that are tightly paired with rpoB gene mutation sites, combined with Cas12a enzyme and fluorescent probes. Rapid and sensitive mutation detection is achieved through PCR amplification and a CRISPR-Cas12a detection system, making it particularly suitable for detecting low-abundance mutations in mixed samples.

Benefits of technology

It enables rapid, sensitive, and specific detection of drug-resistant mutations in Mycobacterium tuberculosis, with a detection time of ≤2 hours and a sensitivity of up to 0.1%. The detection results are highly consistent with Sanger sequencing, making it suitable for point-of-care clinical testing.

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Abstract

The invention discloses a mycobacterium tuberculosis rpoB gene mutation detection method based on a CRISPR-Cas12a technology and a kit, and relates to the technical field of molecular biological detection. According to the present invention, through the design and the screening of the specific crRNA, the 531-crRNA4 with the nucleotide sequence represented by SEQ ID NO. 4 is successfully obtained; the sequence is combined with CRISPR-Cas12a and a PCR (Polymerase Chain Reaction) technology, can efficiently detect the rifampicin drug-resistant mutation site S531L, and has the remarkable advantages of high sensitivity, strong specificity, simplicity and convenience in operation and the like. The detection result of a clinical sample is highly consistent with the Sanger sequencing result, the detection time is shortened to be within 2 hours, and the method is suitable for rapid screening of clinical drug resistance. According to the technology, the time for doctors and patients to obtain detection reports is remarkably shortened, and the medical efficiency is effectively improved.
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