Method for constructing a medium-flux single-cell copy number library and application thereof

CN114836838BActive Publication Date: 2026-08-28SHENZHEN HUATENG CLOUD COMPUTING CO LTD
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Patent Information

Application Number
CN202110133128.5
Authority / Receiving Office
CN · China
Patent Type
Patents(China)
Current Assignee / Owner
Filing Date
2021-02-01
Publication Date
2026-08-28
Estimated Expiration
2041-02-01

AI Technical Summary

Technical Problem

2、无法进行精准的对指定单个细胞的预先标记

Benefits of technology

[0041]本发明的有益效果:本方法可以视乎实验的需求达至中通量级别甚至高通量级别。主要体现在根据实际情况,把样品制备成单细胞悬液后,使用10μl含滤芯的移液枪方法进行单细胞的捕获与分离,或需求通量高的时候可使用分选级别的流式细胞仪或者市面上已经投产的Namocell等单细胞分选系统进行分选。按照本实验的方法,在分选细胞的步骤的时候只需要普通的96孔板或者八连管即可,不需要某系单细胞测序公司所需要特殊的微流控芯片及特殊油包水磁珠或微孔体系。当96孔板或八联管每一个孔含有一个单细胞的时候(体系约1μl),本实验使用该方法中最核心的自主设计的含有barcode的Tn5转座酶进行片段化(即加入可识别的序列)。而且经过优化后的反应体系可在5μl的反应液环境中进行片段化和加接头合并反应将每个单细胞进行标识。随后进行直接混合(pooling)纯化的步骤,在无需预扩增的步骤下,进行一步到位的PCR基因组测序建库扩增,这是由于双端采用的是不同的接头,由于PCR抑制效应(参考文献),当出现转座酶由于不可抗原因成为A-A端,或者B-B端的时候,在扩增阶段会形成发夹结构而无法进行扩增,最终保证文库的扩增效率。若是有需求,例如不同的细胞或者想增加细胞测序的通量,也可在此步利用已商业化的index进行标记。本方法经过测试已经符合商业化试剂盒的index(诺唯赞,illuminate等品牌)的引物接头,因此理论上本方法能方便快捷的进行成百上千的细胞的单细胞拷贝数变异测序文库构建。并针对临床样品中的液体活检的肿瘤单细胞例如循环癌细胞(CTC),生殖健康例如PGT(植入前遗传筛查)和NIPD(无创产前诊断)的研究及临床应用及其他疾病早期诊断提供新型关键核心前沿技术,推动整个生物医学发展。

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Abstract

The application provides a medium-flux single-cell copy number library construction and sequencing method, which comprises the following steps: sorting single cells, independently performing cell lysis on each single cell, inserting genomic DNA by using a Tn5 transposase system, simultaneously performing single-cell-specific whole-genome barcode precise marking, then performing multi-sample mixing, performing multi-sample sequencing library construction in a single test tube, and then performing subsequent sequencing; and after sequencing, data corresponding to the identified cells are obtained by accurately decoding the single-cell sample barcode, and analysis is performed. The core of the application is that a Tn5 transposase containing a sample-specific nucleotide barcode oligonucleotide is used to fragment the single-cell sample DNA while adding a recognition sequence, then multiple samples are directly mixed at an early stage, so that pre-amplification is not required, early single-test-tube multi-sample operation is achieved, the library is compatible with a universal sequencing system, efficient genomic sequencing library construction and sequencing are achieved.
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