PROTAC chimera for targeted degradation of ALKBH5 as well as preparation method and application of PROTAC chimera

By designing the PROTAC chimera, using the ALKBH5 targeting ligand and E3 ubiquitin ligase to recruit the ligand, and binding it to a flexible polyethylene glycol chain, the irreversible degradation of the ALKBH5 protein is achieved. This overcomes the limitations of existing small molecule inhibitors, significantly inhibits tumor cell proliferation and reverses chemotherapy resistance, and provides an efficient and selective targeted degradation strategy.

CN122356019APending Publication Date: 2026-07-10HANGZHOU INSTITUTE OF MEDICAL SCIENCES CHINESE ACADEMY OF SCIENCES
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Patent Information

Application Number
CN202610400076.6
Authority / Receiving Office
CN · China
Patent Type
Applications(China)
Current Assignee / Owner
Filing Date
2026-03-30
Publication Date
2026-07-10

AI Technical Summary

Technical Problem

Existing small molecule inhibitors targeting ALKBH5 cannot completely eliminate the ALKBH5 protein in cells, easily leading to compensatory upregulation of the target protein and drug resistance. There is a lack of efficient and selective targeted degradation strategies.

Method used

A novel PROTAC chimera was designed, employing an ALKBH5 targeting ligand, an E3 ubiquitin ligase to recruit the ligand, and a flexible polyethylene glycol chain. Irreversible degradation of the ALKBH5 protein was achieved through ubiquitination modification, and the complete clearance of the target protein was mediated by the catalytic properties of the PROTAC molecule and the proteasome system.

Benefits of technology

It achieves complete clearance of ALKBH5 protein, overcomes the limitations of traditional inhibitors, significantly inhibits tumor cell proliferation, reverses chemotherapy resistance, and has highly selective and long-lasting targeted degradation effects, reducing drug dosage and off-target toxicity.

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Abstract

The invention discloses a PROTAC chimera for targeted degradation of ALKBH5 as well as a preparation method and application of the PROTAC chimera. The structural formula of the PROTAC chimera is as shown in formula I in the specification. According to the PROTAC chimera provided by the invention, specific ubiquitination modification and proteasome-dependent degradation of the ALKBH5 protein are realized, and a target protein function is thoroughly eliminated from the source. The invention overcomes the inherent limitations that the traditional small-molecule inhibitor can only reversibly block the ALKBH5 enzyme activity, cannot remove the target protein, and is easy to induce the target protein compensatory up-regulation and drug resistance, and provides a brand-new precise targeted treatment strategy for the ALKBH5-driven malignant tumors.
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