Adenovirus Helper Plasmids

Abstract

The present disclosure provides improved adenovirus helper plasmids for the production of recombinant adeno-associated viruses.

Description

[Technical field]

[0001] CROSS-REFERENCE TO RELATED APPLICATIONS This application claims the benefit of U.S. Provisional Application No. 63 / 188,294, filed May 13, 2021, the entire contents of which are incorporated herein by reference. [Background technology]

[0002] Adeno-associated virus (AAV) technology has quickly become the primary form of gene therapy for genetic diseases. AAV can be produced on a large scale in a variety of host cell systems, including mammalian cells such as HEK293 cells. Traditionally, the production of AAV in mammalian cells involves the introduction of multiple plasmids into the host cell, such as plasmids encoding the human gene or genes of interest, as well as various viral genes important for viral replication and packaging. Due to the number of genes required for proper replication, traditionally these are delivered on two or three separate plasmids.

[0003] One such plasmid, called the "adenovirus helper" plasmid, contains genes important for AAV production from host cells. The adenovirus helper plasmid, which contains the E2a, VA RNA, and E4 genes, has been shown to be important in facilitating AAV production in mammalian host cell systems.

[0004] Despite significant progress over the past two decades, concerns about the cost and safety of AAV production continue to limit the therapeutic potential of AAV technology. These concerns are due in part to the large size of many helper plasmids, which result from providing multiple genes on a single helper plasmid to support AAV production. Safety concerns are due in part to the production of low levels of potentially cytotoxic and / or inflammatory viral proteins that are not required for AAV replication. Summary of the Invention [Means for solving the problem]

[0005] In some embodiments, the present disclosure provides, inter alia, an adenoviral helper plasmid. In some embodiments, the present disclosure provides an adenoviral helper plasmid that is reduced in size compared to those known in the art. In some embodiments, the present disclosure provides an adenoviral helper plasmid that includes nucleotide sequences encoding E2a, VA RNA, E4; and L4 regions. In some embodiments, the adenoviral helper plasmids described herein include nucleotide sequences encoding proteins from other viruses. In some embodiments, the adenoviral helper plasmids described herein include nucleotide sequences encoding proteins from other viruses, including HSV-1 UL30, HSV-1 UL42, and / or HSV-1 UL29.

[0006] In some embodiments, the present disclosure provides an adenovirus helper plasmid that does not include one or more nucleotide sequences encoding one or more of fiber protein; L1-52 / 55K (packaging protein 3), peripentonal hexon associated protein, and L4 region. In some embodiments, the present disclosure provides an adenovirus helper plasmid that includes a fragment, part, or partial form of E2a protein, VA RNA, E4, L1-52 / 55K (packaging protein 3), peripentonal hexon associated protein, and L4 region. In some embodiments, the present disclosure provides an adenovirus helper plasmid that does not include one or more nucleotide sequences encoding one or more of hexon associated precursor (L4 pVIII) protein, DNA terminal protein, and 23 kDa endoprotease. In some embodiments, the present disclosure provides an adenovirus helper plasmid that does not include one or more nucleotide sequences encoding one or more of E4orf1 and E4orf2. In some embodiments, the adenovirus helper plasmids provided herein contain a kanamycin resistance gene.

[0007] In some embodiments, the present disclosure provides an adenovirus helper plasmid in which expression of the E2a protein is under the control of one or more of the E2a promoter, the chicken β-actin promoter, and the SV40 promoter. In some embodiments, the present disclosure provides an adenovirus helper plasmid in which expression of the E4 open reading frame (orf) is under the control of one or more of the chicken β-actin promoter and the SV40 promoter.

[0008] In some embodiments, the disclosure provides an adenovirus helper plasmid comprising a nucleotide sequence that is at least 80% identical to SEQ ID NO:1-3, 5, 7, 9, 11-12, 14-20, 22, 24, 26-29, 31, 33, 35-37, 39-70, 72, 74, 76, 78, or 80. In some embodiments, the disclosure provides an adenovirus helper plasmid comprising a nucleotide sequence that encodes an amino acid sequence that is at least 80% identical to SEQ ID NO:4, 6, 8, 10, 13, 21, 23, 25, 30, 32, 34, 38, 71, 73, 75, 77, 79, or 81. In some embodiments, the disclosure provides an adenovirus helper plasmid comprising a nucleotide sequence that is at least 80% identical to any one of SEQ ID NOs:41-66. [Brief description of the drawings]

[0009] [Figure 1] 1 shows a plasmid map illustrating the adenovirus helper plasmid pEMBR-1.2.

[0010] [Diagram 2] Vector yields obtained using pEMBR-1.2 and the commercially available pX80 as adenovirus helper plasmids are shown.

[0011] [Diagram 3]Vector transgene purity and vector capsid purity obtained using pEMBR-1.2 or the commercially available pX80 as the adenovirus helper plasmid are shown.

[0012] [Figure 4] A comparison between the GFP expression levels obtained following transformation of HEK293 cells with recombinant AAV RH.10, the ssCMV-GFP transgene, and either the pX80 or pEMBR helper plasmids is shown.

[0013] [Figure 5-1] 1 shows plasmid maps illustrating the adenovirus helper plasmids pEMBR-1.3 and pEMBR-1.3B. [Figure 5-2] 1 shows plasmid maps illustrating the adenovirus helper plasmids pEMBR-1.3 and pEMBR-1.3B.

[0014] [Figure 6-1] 1 shows the plasmid maps of the adenovirus helper plasmids pEMBR-1.4 and pEMBR-1.4B. [Figure 6-2] 1 shows the plasmid maps of the adenovirus helper plasmids pEMBR-1.4 and pEMBR-1.4B.

[0015] [Figure 7] 1 shows the adenovirus helper plasmid pEMBR-1.5, a plasmid map of which is shown.

[0016] [Figure 8] 1 shows a plasmid map illustrating the adenovirus helper plasmid pEMBR-1.2B2C.

[0017] [Figure 9] 1 shows a plasmid map illustrating the adenovirus helper plasmid pEMBR-1.2B2D.

[0018] [Figure 10] 1 shows a plasmid map illustrating the adenovirus helper plasmid pEMBR-1.5A.

[0019] [Figure 11] 1 shows a plasmid map illustrating the adenovirus helper plasmid pEMBR-1.55B2.

[0020] [Figure 12] 1 shows the adenovirus helper plasmid pEMBR-1.55B2 OO, a plasmid map is shown.

[0021] [Figure 13] 1 shows a plasmid map illustrating the adenovirus helper plasmid pEMBR-1.55B2C.

[0022] [Figure 14] 1 shows the adenovirus helper plasmid pEMBR-1.55B2C OO, a plasmid map is shown.

[0023] [Figure 15] 1 shows a plasmid map illustrating the adenovirus helper plasmid pEMBR-1.55B2D.

[0024] [Figure 16] 1 shows the adenovirus helper plasmid pEMBR-1.55B2D OO, a plasmid map is shown.

[0025] [Figure 17] Vector yields (VG / mL) measured by qPCR obtained using various pEMBR plasmids as adenoviral helper plasmids are shown.

[0026] [Figure 18]1 shows vector yields (VG / mL) measured by qPCR obtained using various pEMBR plasmids and pHelper as the adenovirus helper plasmid. DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS

[0027] definition Agent: In general, the term "agent" as used herein is used to refer to an entity (e.g., lipid, metal, nucleic acid, polypeptide, polysaccharide, small molecule, etc., or a complex, combination, mixture, or system thereof (e.g., cell, tissue, organism) or phenomenon (e.g., heat, electric current or electric field, magnetic force or magnetic field, etc.). Under appropriate circumstances, as will be clear from the context to one of skill in the art, the term may be used to mean an entity that is or includes a cell or organism, or a fraction, extract, or component thereof. Alternatively or additionally, as will be clear from the context, the term may be used to refer to a natural product in that it is found in nature and / or obtained from nature. In some cases, again as will be clear from the context, the term may be used to refer to one or more entities that are artificial in that they are designed, engineered, and / or produced through the action of the hand of man, and / or are not found in nature. In some embodiments, the agent may be utilized in isolated or pure form, and in some embodiments, the agent may be utilized in crude form. In some embodiments, potential agents may be provided as a collection or library that may be screened, for example, to identify or characterize active agents therein. In some cases, the term "agent" may refer to a compound or entity that is or includes a polymer, and in some cases, the term may refer to a compound or entity that includes one or more polymeric moieties. In some embodiments, the term "agent" may refer to a compound or entity that is not a polymer and / or is substantially free of any polymer and / or one or more specific polymeric moieties. In some embodiments, the term may refer to a compound or entity that is devoid of or substantially free of any polymeric moieties.

[0028] Approximately / about: As used herein, the term "approximately" or "about" refers to a value that is similar to a stated reference value when applied to one or more values ​​of interest. In certain embodiments, the term "approximately" or "about" refers to a range of values ​​that is within 25%, 20%, 19%, 18%, 17%, 16%, 15%, 14%, 13%, 12%, 11%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1% in either direction (above or below) of the stated reference value, unless otherwise stated or clear from the context (except when such number exceeds 100% of possible values).

[0029] Equivalent: As used herein, the term "equivalent" refers to two or more agents, entities, situations, sets of conditions, etc. that may not be identical to each other, but are sufficiently identical to allow comparison between them, so that a person skilled in the art will understand that conclusions can be reasonably drawn based on observed differences or similarities. In some embodiments, equivalent sets of conditions, situations, individuals, or populations are characterized by multiple substantially identical features and one or a few different features. A person skilled in the art will understand what degree of identity is required in any given situation for two or more such agents, entities, situations, sets of conditions, etc. to be considered equivalent, depending on the context. For example, a person skilled in the art will understand that a set of situations, individuals, or populations is equivalent to each other when it is characterized by a sufficient number and type of substantially identical features to warrant a reasonable conclusion that differences in results obtained or phenomena observed under or with different sets of situations, individuals, or populations are caused or indicated by variations in these varying features.

[0030] Corresponding to: As used herein, the term "corresponding to" may be used to indicate the location / identity of a structural element in a compound or composition through comparison with an appropriate reference compound or composition. For example, in some embodiments, a monomeric residue in a polymer (e.g., an amino acid residue in a polypeptide or a nucleic acid residue in a polynucleotide) may be identified as "corresponding to" a residue in an appropriate reference polymer. For example, for the purpose of simplicity, residues in a polypeptide are often designated using a regular numbering system based on a reference related polypeptide, so that an amino acid "corresponding to" a residue at, for example, position 190 is not necessarily actually the 190th amino acid in a particular amino acid chain, but rather corresponds to the residue found at 190 in the reference polypeptide, and one of skill in the art will readily understand how to identify a "corresponding" amino acid. For example, one of skill in the art will be aware of a variety of sequence alignment strategies that can be utilized to identify "corresponding" residues in polypeptides and / or nucleic acids in accordance with the present disclosure, including, for example, software programs such as BLAST, CS-BLAST, CUSASW++, DIAMOND, FASTA, GGSEARCH / GLSEARCH, Genoogle, HMMER, HHpred / HHsearch, IDF, Infernal, KLAST, USEARCH, parasail, PSI-BLAST, PSI-Search, ScalaBLAST, Sequilab, SAM, SSEARCH, SWAPHI, SWAPHI-LS, SWIMM, or SWIPE.

[0031] Downstream: As used herein, the term "downstream" refers to the location or position of a nucleic acid sequence relative to a reference nucleic acid sequence, particularly the location during RNA transcription that is closer to the 3' end of the transcribed RNA molecule encoded by the reference sequence. For example, for two sequences A and B, such that sequence A is downstream of sequence B, transcription of sequence B proceeds toward sequence A.

[0032] Nucleic Acid: As used herein, in its broadest sense, the term "nucleic acid" refers to any compound and / or substance that is or can be incorporated into an oligonucleotide chain. In some embodiments, a nucleic acid is a compound and / or substance that is or can be incorporated into an oligonucleotide chain via a phosphodiester bond. As will be clear from the context, in some embodiments, "nucleic acid" refers to an individual nucleic acid residue (e.g., nucleotide and / or nucleoside), and in some embodiments, "nucleic acid" refers to an oligonucleotide chain that includes individual nucleic acid residues. In some embodiments, "nucleic acid" is or includes RNA, and in some embodiments, "nucleic acid" is or includes DNA. In some embodiments, a nucleic acid is, includes, or consists of one or more naturally occurring nucleic acid residues. In some embodiments, a nucleic acid is, includes, or consists of one or more nucleic acid analogs. In some embodiments, a nucleic acid analog differs from a nucleic acid in that it does not utilize a phosphodiester backbone. For example, in some embodiments, the nucleic acid is, comprises, or consists of one or more "peptide nucleic acids," which are known in the art and have peptide bonds in the backbone instead of phosphodiester bonds, and are considered within the scope of the present invention. Alternatively or additionally, in some embodiments, the nucleic acid has one or more phosphorothioate and / or 5'-N-phosphoramidite linkages rather than phosphodiester linkages. In some embodiments, the nucleic acid is, comprises, or consists of one or more naturally occurring nucleosides (e.g., adenosine, thymidine, guanosine, cytidine, uridine, deoxyadenosine, deoxythymidine, deoxyguanosine, and deoxycytidine).In some embodiments, the nucleic acid is, comprises, or consists of one or more nucleoside analogs (e.g., 2-aminoadenosine, 2-thiothymidine, inosine, pyrrolo-pyrimidine, 3-methyladenosine, 5-methylcytidine, C-5 propynyl-cytidine, C-5 propynyl-uridine, 2-aminoadenosine, C5-bromouridine, C5-fluorouridine, C5-iodouridine, C5-propynyl-uridine, C5-propynyl-cytidine, C5-methylcytidine, 2-aminoadenosine, 7-deazaadenosine, 7-deazaguanosine, 8-oxoadenosine, 8-oxoguanosine, O(6)-methylguanine, 2-thiocytidine, methylated bases, intercalating bases, and combinations thereof). In some embodiments, the nucleic acid comprises one or more sugars (e.g., 2'-fluororibose, ribose, 2'-deoxyribose, arabinose, and hexose) that are modified compared to those of naturally occurring nucleic acids. In some embodiments, the nucleic acid has a nucleotide sequence that encodes a functional gene product, such as RNA or a protein. In some embodiments, the nucleic acid comprises one or more introns. In some embodiments, the nucleic acid is prepared by one or more of isolation from a natural source, enzymatic synthesis by polymerization based on a complementary template (in vivo or in vitro), replication in a recombinant cell or system, and chemical synthesis. In some embodiments the nucleic acid is at least 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 110, 120, 130, 140, 150, 160, 170, 180, 190, 20, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 600, 700, 800, 900, 1000, 1500, 2000, 2500, 3000, 3500, 4000, 4500, 5000 or more residues in length. In some embodiments, the nucleic acid is partially or entirely single-stranded, and in some embodiments, the nucleic acid is partially or entirely double-stranded.In some embodiments, the nucleic acid has a nucleotide sequence that includes at least one factor that encodes a polypeptide or is the complement of a sequence that encodes a polypeptide. In some embodiments, the nucleic acid has enzymatic activity.

[0033] Operably linked: As used herein, the term "operably linked" refers to a juxtaposition in which the described components are in a relationship that allows them to function in their intended manner. A control element "operably linked" to a functional element is associated in such a manner that expression and / or activity of the functional element is achieved under conditions compatible with the control element. In some embodiments, an "operably linked" control element is contiguous (e.g., covalently linked) with the coding element of interest, and in some embodiments, the control element acts in trans with respect to the functional element of interest or at a distance from the functional element of interest.

[0034] Producer cell: As used herein, the term "producer cell" refers to any cell used to produce recombinant AAV (rAAV). In some embodiments, the producer cell is a mammalian cell. In some embodiments, the producer cell is a transformed mammalian cell. In some embodiments, the producer cell is a Vero, HeLa, HEK293, HEK293T cell, or derivatives thereof.

[0035] Transformation: As used herein, the term "transformation" refers to any process by which exogenous DNA is introduced into a host cell. Transformation can occur under natural or artificial conditions using a variety of methods well known in the art. Transformation can rely on any known method for inserting foreign nucleic acid sequences into prokaryotic or eukaryotic host cells. In some embodiments, the particular transformation method is selected based on the host cell to be transformed and can include, but is not limited to, viral infection, electroporation, mating, lipofection. In some embodiments, a "transformed" cell is stably transformed in that the inserted DNA is capable of replicating either as an autonomously replicating plasmid or as part of the host chromosome. In some embodiments, the transformed cell transiently expresses the introduced nucleic acid for a limited period of time.

[0036] Upstream: As used herein, the term "upstream" refers to the location or position of a nucleic acid sequence relative to a reference nucleic acid sequence, particularly a position during RNA transcription that is near the 5' end of the transcribed RNA molecule encoded by the reference sequence. For example, for two sequences A and B, such that sequence A is upstream of sequence B, transcription of sequence B proceeds away from sequence A.

[0037] Vector: As used herein, the term "vector" refers to a nucleic acid molecule capable of transporting another nucleic acid molecule to which it has been linked. One type of vector is a "plasmid," which refers to a circular double-stranded DNA loop into which additional DNA segments can be ligated. Another type of vector is a viral vector, into which additional DNA segments can be ligated. Certain vectors are capable of autonomous replication in a host cell into which they are introduced (e.g., bacterial vectors having a bacterial origin of replication and episomal mammalian vectors, etc.). Other vectors (e.g., non-episomal mammalian vectors) can be integrated into the genome of a host cell upon introduction into the host cell, and thereby are replicated along with the host genome. In addition, certain vectors are capable of inducing the expression of genes operably linked to the vector. Such vectors are referred to herein as "expression vectors." Standard techniques of recombinant DNA, oligonucleotide synthesis, and tissue culture and transformation (e.g., electroporation, lipofection) can be used. Enzymatic reactions and purification techniques can be performed according to manufacturer's specifications or as commonly accomplished in the art or as described herein. The techniques and procedures described above may generally be performed according to conventional methods well known in the art and as described in various general and more specific references cited and discussed throughout this specification. See, for example, Sambrook et al., Molecular Cloning: A Laboratory Manual (2d ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1989)), which is incorporated herein by reference for any purpose. [Mode for carrying out the invention]

[0038] The helper functions that adenovirus provides to AAV replication have been described previously. Without wishing to be bound by any particular hypothesis, adenovirus E1A protein has been described to activate AAV gene expression by binding and activating the AAV P5 rep promoter. Similarly, another adenovirus protein, E2A, has been described to activate AAV P5 promoter transcription. E2A has also been described to cooperate with virus-associated RNA I (VA RNAI) to enhance AAV RNA translation. Adenovirus E4orf4 has been shown to induce cell cycle arrest at the G2 / M boundary as well as assist AAV production. Adenovirus E4orf6 has been described to enhance the conversion of single-stranded recombinant AAV genome to a double-stranded genome, which is the rate-limiting step of viral DNA replication both in vitro and in vivo. VA RNAI has also been described to assist AAV replication. VA RNAI has been described to physically interact with double-stranded RNA-activated protein kinase (PKR) and induce an antiviral immune response that inhibits viral protein production.

[0039] Previous studies have suggested that the minimal set of genes in trans for efficient recombinant AAV production in HEK293 cells providing the El gene is E2a, E4orf6, and VA RNAI genes. A helper plasmid named pXX6 containing this gene set is used for adenovirus-free recombinant AAV production.

[0040] One major ongoing challenge in the development and optimization of AAV vectors for clinical use is to increase the amount of virus produced. Due to their non-proliferative nature, their production depends only on the transfection efficiency of parvovirus genome components into packaging cell lines (e.g., human embryonic kidney cells, HEK293 or HEK293T, or insect cells, e.g., Sf9). Therefore, it remains very important to develop a means to increase recombinant AAV (rAAV) production.

[0041] Other major challenges associated with the production of rAAV for clinical use are related to the cost of producing such rAAV in large quantities, and also the safety of the final product itself. For example, commercially available helper plasmids such as pXX6-80 appear to transcribe low levels of Ad fiber protein. Importantly, fiber protein is not required for AAV production and may be immunogenic in humans. In addition, the size of pXX6-80 is rather large, exceeding 18 kb. This large plasmid size increases the difficulty and cost of its production, which may greatly affect the origin of GMP plasmids for the production of clinical grade AAV.

[0042] Different versions of adenovirus helper plasmids have been derived by others, including, for example, pFAdDeltaF6 (derived at the University of Pennsylvania) and pHelper (Agilent). The pFAdDeltaF6 plasmid is approximately 3 kb smaller than pXX6-80 but retains the fiber gene sequence. The pHelper plasmid, available from Agilent, is smaller than pXX6-80, at approximately 11.6 kb. However, it contains an ampicillin resistance gene, which is generally not recommended for plasmids used in AAV production.

[0043] The present disclosure addresses the above technical problems by providing the compositions and methods described herein.

[0044] In some embodiments, the present disclosure relates to an adenovirus-derived helper plasmid (adenovirus helper plasmid) that comprises an adenovirus DNA sequence that encodes a viral helper protein. In some embodiments, the adenovirus helper plasmid of the present disclosure is used in a method for producing recombinant adeno-associated virus (rAAV). In some embodiments, the adenovirus helper plasmid of the present disclosure increases the production of rAAV.

[0045] In some embodiments, the present disclosure provides an adenovirus helper plasmid that includes a nucleotide sequence encoding a protein derived from a source other than adenovirus. In some embodiments, the present disclosure provides an adenovirus helper plasmid that includes a nucleotide sequence encoding a protein derived from a virus other than adenovirus. In some embodiments, the adenovirus helper plasmid includes all or a portion of the adenovirus nucleotide sequence encoding the adenovirus proteins E2a and E4, and the non-coding RNA VA RNA. In some embodiments, the present disclosure describes an improved adenovirus helper plasmid that is smaller than the leading commercially available adenovirus helper plasmids and allows for safer and lower-cost production of rAAV in producer cell expression systems.

[0046] In some embodiments, the present disclosure provides adenovirus helper plasmids that have a reduced overall size compared to currently available adenovirus helper plasmids (e.g., pXX6-80 at 18.932 kbp, pALD-X80 at 18.876 kbp, pHelper at 11.635 kbp, pFAdDeltaF6 at 15.420 kbp).

[0047] In some embodiments, the present disclosure provides an adenovirus helper plasmid having a smaller size. In some embodiments, the adenovirus helper plasmid of the present disclosure is approximately 6.5 kb to 15.5 kb. In some embodiments, the adenovirus helper plasmid of the present disclosure has a size of approximately 6 kb, 7 kb, 8 kb, 9 kb, 10 kb, 11 kb, 12 kb, 13 kb, 14 kb, 15 kb, or 16 kb. In some embodiments, the adenovirus helper plasmids of the present disclosure have a size that is approximately 6-7 kb, 6.5-7.5 kb, 7-8 kb, 7.5-8.5 kb, 8-9 kb, 8.5-9.5 kb, 9-10 kb, 9.5-10.5 kb, 10-11 kb, 10.5-11.5 kb, 11-12 kb, 11.5-12.5 kb, 12-13 kb, 12.5-13.5 kb, 13-14 kb, 13.5-14.5 kb, 14-15 kb, 14.5-15.5 kb, 15-16 kb. The smaller size of the adenovirus helper plasmids of the present disclosure allows for simpler and less costly production of AAV in the quantities required for large scale manufacturing of AAV. In some embodiments, removing genes and / or portions of genes makes the adenoviral helper plasmids of the present disclosure safer, as the producer cells do not produce adenoviral structural proteins (e.g., fiber) that may be co-purified with AAV during downstream processing, and thus present a lower risk of inadvertently introducing adenoviral structural proteins into a patient.

[0048] In some embodiments, the removal of adenoviral helper genes resulting in smaller adenoviral helper plasmids allows the addition of complementary genes to further improve AAV quality and yield. Although these complementary genes increase the size of the plasmid compared to the minimal version, they allow for equivalent or higher AAV productivity and are therefore worth the additional cost to produce. Importantly, these plasmids are still smaller than commercially available helper plasmids such as pALD-X80.

[0049] Adenovirus Helper Plasmids Helper and resistance genes In some embodiments, the adenovirus helper plasmid of the present disclosure comprises one or more nucleotide sequence(s) encoding a protein selected from the group consisting of E2b, E2a, E4orf4, E1B55K, E1b19K, E1a, E4orf6, VA RNA, and combinations thereof.

[0050] In some embodiments, the adenoviral helper plasmid comprises a nucleotide sequence encoding an E2a protein, an E4 region, and a VA RNA region. In some embodiments, the E4 region comprises one or more of E4orf1, E4orf2, E4orf3, E4orf4, E4orf5, E4orf6, and E4orf7. In some embodiments, E4orf1 has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:70. In some embodiments, E4orf1 has an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:71. In some embodiments, E4orf2 has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:72. In some embodiments, E4orf2 has an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:73. In some embodiments, E4orf3 has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:74. In some embodiments, E4orf3 has an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:75. In some embodiments, E4orf4 has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:76. In some embodiments, E4orf4 has an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:77. In some embodiments, E4orf6 has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 78. In some embodiments, E4orf6 has an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 79. In some embodiments, E4orf7 has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:80.In some embodiments, E4orf7 has an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:81. In some embodiments, the adenoviral helper plasmid does not contain a nucleotide sequence that comprises E4orf1. In some embodiments, the adenoviral helper plasmid does not contain a nucleotide sequence that comprises E4orf2. In some embodiments, the adenoviral helper plasmid does not contain a nucleotide sequence that comprises E4orf1 and does not contain a nucleotide sequence that comprises E4orf2. In some embodiments, the expression of the E4 region is under the control of an E4 mini promoter. In some embodiments, the E4 region is operably linked to an E4 mini promoter. In some embodiments, the E4 mini promoter has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:1. In some embodiments, the E4 region is operably linked to an SV40 promoter. In some embodiments, the expression of the E4 region is under the control of an SV40 promoter. In some embodiments, the SV40 promoter has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:2.

[0051] In some embodiments, the adenoviral helper plasmid of the invention comprises a resistance gene. In some embodiments, the adenoviral helper plasmid of the invention comprises an ampicillin resistance gene (e.g., a nucleotide sequence encoding a protein that confers resistance to ampicillin). In some embodiments, the adenoviral helper plasmid of the invention does not comprise an ampicillin resistance gene. In some embodiments, the adenoviral helper plasmid of the invention comprises a kanamycin resistance gene (e.g., a nucleotide sequence encoding a protein that confers resistance to kanamycin). In some embodiments, the adenoviral helper plasmid of the invention does not comprise a kanamycin resistance gene.

[0052] Fiber Genes In some embodiments, the adenoviral helper plasmid of the present disclosure does not include a nucleotide sequence encoding an adenoviral fiber protein. In some embodiments, the adenoviral helper plasmid does not include a nucleotide sequence encoding a full-length adenoviral fiber protein. In some embodiments, the adenoviral helper plasmid includes a nucleotide sequence encoding a portion or fragment of an adenoviral fiber protein. In some embodiments, the adenoviral helper plasmid includes a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the nucleotide sequence of pXX6-80, except for the nucleotide sequence encoding the adenoviral fiber protein.

[0053] L1-52 / 55K (packaging protein 3) gene In some embodiments, the adenoviral helper plasmid of the present disclosure does not include a nucleotide sequence encoding the L1-52 / 55K (packaging protein 3) protein. In some embodiments, the adenoviral helper plasmid of the present disclosure does not include a nucleotide sequence encoding a penton peripheral hexon associated gene.

[0054] L4 area In some embodiments, the adenoviral helper plasmid of the present disclosure comprises a complete L4 (hexon assembly) gene. In some embodiments, the adenoviral helper plasmid of the present disclosure comprises a nucleotide sequence encoding a complete L4 (hexon assembly). In some embodiments, the adenoviral helper plasmid of the present disclosure comprises a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:3. In some embodiments, the adenoviral helper plasmid of the present disclosure comprises an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:4. In some embodiments, the adenoviral helper plasmid of the present disclosure comprises a complete L4 (33 kDa Ex2) gene. In some embodiments, the adenoviral helper plasmid of the present disclosure comprises a nucleotide sequence encoding a complete L4 (33 kDa Ex2). In some embodiments, the adenovirus helper plasmid of the disclosure comprises a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 5. In some embodiments, the adenovirus helper plasmid of the disclosure comprises an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 6.

[0055] In some embodiments, the adenovirus helper plasmid of the present disclosure comprises a complete L4 encapsidation protein gene. In some embodiments, the adenovirus helper plasmid of the present disclosure comprises a nucleotide sequence encoding a complete L4 encapsidation protein. In some embodiments, the adenovirus helper plasmid of the present disclosure comprises a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:7. In some embodiments, the adenovirus helper plasmid of the present disclosure comprises an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:8.

[0056] In some embodiments, the adenoviral helper plasmid of the present disclosure does not include an L4 (hexon assembly) gene. In some embodiments, the adenoviral helper plasmid does not include an L4 encapsidation protein gene. In some embodiments, the adenoviral helper plasmid does not include an L4 (hexon assembly) gene and does not include an L4 encapsidation protein gene. In some embodiments, the adenoviral helper plasmid of the present disclosure does not include a nucleotide sequence encoding an L4 (hexon assembly). In some embodiments, the adenoviral helper plasmid does not include a nucleotide sequence encoding an L4 encapsidation protein. In some embodiments, the adenoviral helper plasmid does not include a nucleotide sequence encoding an L4 (hexon assembly) and does not include a nucleotide sequence encoding an L4 encapsidation protein gene. In some embodiments, the adenoviral helper plasmid of the present disclosure includes a nucleotide sequence encoding a fragment of the L4 33 kDa Ex2. In some embodiments, the adenovirus helper plasmid of the disclosure comprises a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:9. In some embodiments, the adenovirus helper plasmid comprises a nucleotide sequence that encodes a fragment of L4 33 kDa Ex2. In some embodiments, the adenovirus helper plasmid of the disclosure comprises an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:10. In some embodiments, the nucleotide sequence that encodes a fragment of L4 33 kDa Ex2 comprises an E2a promoter region (see, e.g., Casper et al., "Identification of an adeno-associated viral Rep protein binding site in the adenovirus E2a promoter." Journal of virology 79.1 (2005)).In some embodiments, the E2a promoter region has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 11. In some embodiments, the adenoviral helper plasmid does not include a nucleotide sequence encoding a fragment of L4 33 kDa Ex2. In some embodiments, the adenoviral helper plasmid does not include an E2a promoter region.

[0057] In some embodiments, the adenoviral helper plasmid of the present disclosure comprises a nucleotide sequence encoding a fragment of a hexon-related precursor (L4 pVIII). In some embodiments, the adenoviral helper plasmid comprises a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 12. In some embodiments, the adenoviral helper plasmid comprises an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 13. In some embodiments, the adenoviral helper plasmid does not comprise a nucleotide sequence encoding a hexon-related precursor (L4 pVIII). In some embodiments, the adenoviral helper plasmid does not comprise a nucleotide sequence encoding a partial hexon-related precursor (L4 pVIII) fragment.

[0058] VA RNA region In some embodiments, the adenoviral helper plasmid of the present disclosure comprises a VA RNA region having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 14. In some embodiments, the adenoviral helper plasmid comprises a VA RNA region having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 15. In some embodiments, the VA RNA region comprises a VA RNAI gene having a sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 16. In some embodiments, the VA RNA region comprises a VA RNAI gene having a sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 17. In some embodiments, the VA RNA region comprises a VA RNAII gene having a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 18. In some embodiments, the VA RNA region comprises a VA RNAII gene having a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 19.

[0059] In some embodiments, the adenovirus helper plasmid of the present disclosure comprises a nucleotide sequence encoding a fragment of a DNA terminal protein. In some embodiments, the nucleotide sequence encoding the fragment of a DNA terminal protein is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:20. In some embodiments, the fragment of a DNA terminal protein has an amino acid sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:21. In some embodiments, the adenovirus helper plasmid does not comprise a nucleotide sequence encoding a DNA terminal protein. In some embodiments, the adenovirus helper plasmid comprises a nucleotide sequence encoding a fragment of a 23 kDa endoprotease. In some embodiments, the adenovirus helper plasmid comprises a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:22. In some embodiments, the fragment of the 23 kDa endoprotease region has an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 23. In some embodiments, the adenovirus helper plasmid does not include a nucleotide sequence encoding the 23 kDa endoprotease region.

[0060] Introduction of genes encoding complementary traits In some embodiments, the adenoviral helper plasmid of the present disclosure comprises an E2a gene. In some embodiments, the adenoviral helper plasmid of the present disclosure comprises a nucleotide sequence encoding E2a. In some embodiments, the adenoviral helper plasmid of the present disclosure comprises a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:24. In some embodiments, the adenoviral helper plasmid of the present disclosure comprises an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:25. In some embodiments, the expression of E2a is under the control of a promoter. In some embodiments, the nucleotide sequence encoding E2a is operably linked to a promoter. In some embodiments, the promoter is, for example, a CMV promoter, a PGK promoter, an SV40 promoter, an EF-1α promoter, a Ubc promoter, a CAG promoter, or a β-actin promoter. In some embodiments, the nucleotide sequence encoding E2a is operably linked to a transcription enhancer. In some embodiments, the transcription enhancer is, for example, a CMV enhancer. In some embodiments, the nucleotide sequence encoding E2a is operably linked to a regulatory intron. In some embodiments, the expression of E2a is under the control of a chicken β-actin promoter. In some embodiments, the nucleotide sequence encoding E2a is operably linked to a chicken β-actin promoter. In some embodiments, the chicken β-actin promoter has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:26. In some embodiments, the chicken β-actin promoter is located upstream of the nucleotide sequence encoding E2a. In some embodiments, the expression of E2a is under the control of an E2a promoter and a chicken β-actin promoter. In some embodiments, the nucleotide sequence encoding E2a is operably linked to an E2a promoter and a chicken β-actin promoter.In some embodiments, the chicken β-actin promoter is located upstream of the E2a promoter. In some embodiments, expression of E2a is under the control of the chicken β-actin promoter and the CMV enhancer. In some embodiments, the nucleotide sequence encoding E2a is operably linked to the chicken β-actin promoter and the CMV enhancer. In some embodiments, the chicken β-actin promoter and the CMV enhancer are located upstream of the E2a promoter. In some embodiments, the adenovirus helper plasmid comprises an E2a polyadenylation signal. In some embodiments, the E2a polyadenylation signal is located downstream of the nucleotide sequence encoding E2a. In some embodiments, the E2a polyadenylation signal has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:27. In some embodiments, the adenovirus helper plasmid comprises an SV40 polyadenylation signal. In some embodiments, the SV40 polyadenylation signal is located downstream of the nucleotide sequence encoding E2a. In some embodiments, the SV40 polyadenylation signal is located downstream of the E2a polyadenylation signal. In some embodiments, the SV40 polyadenylation signal has a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:28.

[0061] In some embodiments, the adenoviral helper plasmid comprises a nucleotide sequence encoding UL30 from HSV-1. In some embodiments, the nucleotide sequence encoding UL30 has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:29. In some embodiments, the amino acid sequence UL30 is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:30. In some embodiments, the adenoviral helper plasmid comprises a nucleotide sequence encoding UL42 from HSV-1. In some embodiments, the nucleotide sequence encoding UL42 has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:31. In some embodiments, the amino acid sequence of UL42 is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:32. In some embodiments, the adenovirus helper plasmid comprises a nucleotide sequence encoding UL30 derived from HSV-1 and a nucleotide sequence encoding UL42 derived from HSV-1. In some embodiments, the nucleotide sequence encoding UL30 and the nucleotide sequence encoding UL42 are separated by a P2a cleavage site. In some embodiments, the P2a cleavage site has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 33. In some embodiments, the P2a cleavage site has an amino acid sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 34. In some embodiments, the expression of the UL30 and / or UL42 genes is under the control of an EF-1α promoter. In some embodiments, the nucleotide sequence encoding UL30 is operably linked to a promoter. In some embodiments, the nucleotide sequence encoding UL30 is operably linked to a CMV promoter, a PGK promoter, an SV40 promoter, an EF-1α promoter, a Ubc promoter, a CAG promoter, or a β-actin promoter.In some embodiments, the nucleotide sequence encoding UL30 is operably linked to a transcription enhancer. In some embodiments, the transcription enhancer is, for example, a CMV enhancer. In some embodiments, the nucleotide sequence encoding UL30 is operably linked to a regulatory intron. In some embodiments, the nucleotide sequence encoding UL42 and / or the nucleotide sequence encoding UL30 is operably linked to an EF-1α promoter. In some embodiments, the EF-1α promoter has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:35. In some embodiments, the expression of UL30 and / or UL42 is under the control of an SV40 promoter. In some embodiments, the nucleotide sequence encoding UL42 and / or the nucleotide sequence encoding UL30 is operably linked to an SV40 promoter. In some embodiments, the SV40 promoter has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:68.

[0062] In some embodiments, the adenovirus helper plasmid comprises a polyadenylation signal. In some embodiments, the polyadenylation signal is a β-globin polyadenylation signal, an SV40 polyadenylation signal, or a bovine growth hormone (bGH) polyadenylation signal. In some embodiments, the adenovirus helper plasmid comprises a polyadenylation signal downstream of the nucleotide sequence encoding UL42. In some embodiments, the adenovirus helper plasmid comprises a β-globin polyadenylation signal downstream of the nucleotide sequence encoding UL42. In some embodiments, the β-globin polyadenylation signal has a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 36. In some embodiments, the adenovirus helper plasmid comprises a bovine growth hormone (bGH) polyadenylation signal downstream of the nucleotide sequence encoding UL42. In some embodiments, the bGH polyadenylation signal has a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:69.

[0063] In some embodiments, the adenovirus helper plasmid comprises a nucleotide sequence encoding UL29 derived from HSV-1. In some embodiments, the nucleotide sequence encoding UL29 is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 37. In some embodiments, the amino acid sequence of UL29 is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 38. In some embodiments, the nucleotide sequence encoding UL29 is operably linked to a promoter. In some embodiments, the nucleotide sequence encoding UL30 is operably linked to a CMV promoter, a PGK promoter, an SV40 promoter, an EF-1α promoter, a Ubc promoter, a CAG promoter, or a β-actin promoter. In some embodiments, the nucleotide sequence encoding UL29 is operably linked to a transcription enhancer. In some embodiments, the transcription enhancer is, for example, a CMV enhancer. In some embodiments, the nucleotide sequence encoding UL29 is operably linked to a regulatory intron. In some embodiments, the expression of UL29 is under the control of an HSV TK promoter. In some embodiments, the nucleotide sequence encoding UL29 is operably linked to an HSV TK promoter. In some embodiments, the HSV TK promoter has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:39.

[0064] In some embodiments, the adenovirus helper plasmid comprises a polyadenylation signal downstream of the nucleotide sequence encoding UL29. In some embodiments, the polyadenylation signal is a β-globin polyadenylation signal, an SV40 polyadenylation signal, or a bovine growth hormone (bGH) polyadenylation signal. In some embodiments, the adenovirus helper plasmid comprises an HSV TK polyadenylation signal downstream of the nucleotide sequence encoding UL29. In some embodiments, the HSV TK polyadenylation signal has a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:40.

[0065] Exemplary Adenovirus Helper Plasmids In some embodiments, the adenovirus helper plasmid of the disclosure has a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 41. In some embodiments, the adenovirus helper plasmid of the disclosure has the following components with a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequence shown: E4 minipromoter (SEQ ID NO: 1), L4 (hexon assembly) (SEQ ID NO: 3; SEQ ID NO: 4), L4 (33 kDa Ex2) (SEQ ID NO: 5; SEQ ID NO: 6), L4 encapsidation protein (22 kDa) (SEQ ID NO: 7; SEQ ID NO: 8), L4 pVIII hexon-related precursor (SEQ ID NO: 12; SEQ ID NO: 13), VA RNA region A (SEQ ID NO: 14), VA RNAI-A (SEQ ID NO: 16), VA It contains RNAII-A (SEQ ID NO:18), partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), and E2a (SEQ ID NO:24; SEQ ID NO:25), but does not contain the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, and penton perihexon-related gene.

[0066] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:42. In some embodiments, the adenovirus helper plasmids of the disclosure contain the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 mini-promoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region A (SEQ ID NO:14), VA RNAI-A (SEQ ID NO:16), VA RNAII-A (SEQ ID NO:18), partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), and E2a (SEQ ID NO:24; SEQ ID NO:25), and do not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 pVIII hexon-associated precursor.

[0067] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:43. In some embodiments, the adenovirus helper plasmids of the disclosure contain the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 mini-promoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region B (SEQ ID NO:15), VA RNAI-B (SEQ ID NO:17), VA RNAII-B (SEQ ID NO:19), and E2a (SEQ ID NO:24; SEQ ID NO:25), and do not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, L4 pVIII hexon-associated precursor, DNA terminal protein, and 23 kDa endoprotease fragment region.

[0068] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:44. In some embodiments, the adenovirus helper plasmids of the disclosure contain the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 mini-promoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region B (SEQ ID NO:15), VA RNAI-B (SEQ ID NO:17), VA RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), and the SV40 polyadenylation signal downstream of E2a (SEQ ID NO:28), and do not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, L4 pVIII hexon-associated precursor, DNA terminal protein, and 23 kDa endoprotease fragment region.

[0069] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:45. In some embodiments, the adenovirus helper plasmids of the disclosure comprise the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 mini-promoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region A (SEQ ID NO:14), VA RNAI-A (SEQ ID NO:16), VA RNAII-A (SEQ ID NO:18), partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), and E2a (SEQ ID NO:24; SEQ ID NO:25), and an SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), and the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 It does not contain or encode the pVIII hexon-related precursor and the SV40 polyadenylation signal downstream of E2a.

[0070] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:46. In some embodiments, the adenovirus helper plasmids of the disclosure contain the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 mini-promoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region B (SEQ ID NO:15), VA RNAI-B (SEQ ID NO:17), VA RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), and an SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), and the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, L4 It does not contain or encode the pVIII hexon-related precursor, DNA terminal protein, and 23 kDa endoprotease fragment region, and the SV40 polyadenylation signal downstream of E2a.

[0071] In some embodiments, the adenovirus helper plasmid of the disclosure has a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 47. In some embodiments, the adenovirus helper plasmid of the disclosure has the following components with nucleotide sequences at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: SV40 promoter upstream of the E4 region (SEQ ID NO: 2), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region A (SEQ ID NO: 14), VA RNAI-A (SEQ ID NO: 16), VA RNAII-A (SEQ ID NO:18), partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), and E2a (SEQ ID NO:24; SEQ ID NO:25), and the SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), but does not include the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 pVIII hexon-associated precursor, the SV40 polyadenylation signal downstream of E2a, and the E4 mini-promoter upstream of the E4 region.

[0072] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:48. In some embodiments, the adenovirus helper plasmids of the disclosure contain the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: an SV40 promoter upstream of the E4 region (SEQ ID NO:2), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region B (SEQ ID NO:15), VA RNAI-B (SEQ ID NO:17), VA RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), and an SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), and the following components: a fiber gene, an L1-52 / 55K (packaging protein 3) gene, a penton periphery hexon associated gene, a full-length L4 (hexon assembly) gene, an L4 encapsidation protein, an L4 It does not contain or encode the pVIII hexon-related precursor, DNA terminal protein, and 23 kDa endoprotease fragment regions, and the SV40 polyadenylation signal downstream of the E2a and E4 minipromoter upstream of the E4 region.

[0073] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:49. In some embodiments, the adenovirus helper plasmid of the present disclosure comprises the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 mini promoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region A (SEQ ID NO:14), VA RNAI-A (SEQ ID NO:16), VA RNAII-A (SEQ ID NO:18), partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), E2a (SEQ ID NO:24; SEQ ID NO:25), and chicken β-actin promoter upstream of E2a, and does not comprise the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 pVIII hexon associated precursor.

[0074] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:50. In some embodiments, the adenovirus helper plasmids of the present disclosure contain the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 mini promoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region B (SEQ ID NO:15), VA RNAI-B (SEQ ID NO:17), VA RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), and a chicken β-actin promoter upstream of E2a, and do not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, L4 pVIII hexon associated precursor, DNA terminal protein, and 23 kDa endoprotease fragment region.

[0075] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:51. In some embodiments, the adenovirus helper plasmid of the disclosure comprises the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 mini-promoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region B (SEQ ID NO:15), VA RNAI-B (SEQ ID NO:17), VA RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), an SV40 polyadenylation signal downstream of E2a (SEQ ID NO:28), and a chicken β-actin promoter upstream of E2a, and the following components: a fiber gene, an L1-52 / 55K (packaging protein 3) gene, a penton periphery hexon associated gene, a full-length L4 (hexon assembly) gene, an L4 encapsidation protein, an L4 It does not contain or encode the pVIII hexon-related precursor, DNA terminal protein, and 23 kDa endoprotease fragment regions.

[0076] In some embodiments, the adenoviral helper plasmid of the disclosure has a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 52. In some embodiments, the adenoviral helper plasmid of the disclosure has the following components with nucleotide sequences at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 minipromoter (SEQ ID NO: 1), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region A (SEQ ID NO: 14), VA RNAI-A (SEQ ID NO: 16), VA RNAII-A (SEQ ID NO:18), partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), and E2a (SEQ ID NO:24; SEQ ID NO:25), an SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), and a chicken β-actin promoter upstream of E2a, but not including the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton perihexon-related gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 pVIII hexon-related precursor, and the SV40 polyadenylation signal downstream of E2a.

[0077] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:53. In some embodiments, the adenovirus helper plasmids of the disclosure comprise the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 mini-promoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region B (SEQ ID NO:15), VA RNAI-B (SEQ ID NO:17), VA RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), an SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), and a chicken β-actin promoter upstream of E2a, and the following components: a fiber gene, an L1-52 / 55K (packaging protein 3) gene, a penton periphery hexon associated gene, a full-length L4 (hexon assembly) gene, an L4 encapsidation protein, an L4 It does not contain or encode the pVIII hexon-related precursor, DNA terminal protein, and 23 kDa endoprotease fragment region, and the SV40 polyadenylation signal downstream of E2a.

[0078] In some embodiments, the adenovirus helper plasmid of the disclosure has a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 54. In some embodiments, the adenovirus helper plasmid of the disclosure has the following components with nucleotide sequences at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: SV40 promoter upstream of the E4 region (SEQ ID NO: 2), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region A (SEQ ID NO: 14), VA RNAI-A (SEQ ID NO: 16), VA RNAII-A (SEQ ID NO:18), a partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), a 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), and E2a (SEQ ID NO:24; SEQ ID NO:25), an SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), and a chicken β-actin promoter upstream of E2a, and does not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon-associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 pVIII hexon-associated precursor, an SV40 polyadenylation signal downstream of E2a, and an E4 mini-promoter upstream of the E4 region.

[0079] In some embodiments, the adenovirus helper plasmid of the disclosure has a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 55. In some embodiments, the adenovirus helper plasmid of the disclosure has the following components with nucleotide sequences at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: SV40 promoter upstream of the E4 region (SEQ ID NO: 2), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region B (SEQ ID NO: 15), VA RNAI-B (SEQ ID NO: 17), VA It comprises RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), the SV40 polyadenylation signal downstream of E2a (SEQ ID NO:28), the SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), and the chicken β-actin promoter upstream of E2a, and does not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon-associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, L4 pVIII hexon-associated precursor, DNA terminal protein, and the 23 kDa endoprotease fragment region, and the E4 minipromoter upstream of the E4 region.

[0080] In some embodiments, the adenovirus helper plasmid of the disclosure has a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 56. In some embodiments, the adenovirus helper plasmid of the disclosure has the following components with nucleotide sequences at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: SV40 promoter upstream of the E4 region (SEQ ID NO: 2), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region B (SEQ ID NO: 15), VA RNAI-B (SEQ ID NO: 17), VA RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), the SV40 polyadenylation signal downstream of E2a (SEQ ID NO:28), the SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), and the chicken β-actin promoter upstream of E2a, and does not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton perihexon-associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, L4 pVIII hexon-associated precursor, DNA terminal protein, and 23 kDa endoprotease fragment region, the E4 minipromoter upstream of the E4 region, the gene encoding E4orf1, the gene encoding E4orf2, and the gene encoding E4orf3.

[0081] In some embodiments, the adenoviral helper plasmid of the disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 57. In some embodiments, the adenoviral helper plasmid of the disclosure has the following components that have a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequence shown: E4 minipromoter (SEQ ID NO: 1), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region A (SEQ ID NO: 14), VA RNAI-A (SEQ ID NO: 16), VA RNAII-A (SEQ ID NO:18), a partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), a 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), E2a (SEQ ID NO:24; SEQ ID NO:25), a chicken β-actin promoter upstream of E2a, the UL30 gene from HSV-1 (SEQ ID NO:29; SEQ ID NO:30), the UL42 gene from HSV-1 (SEQ ID NO:31; SEQ ID NO:32), the EF-1α promoter upstream of UL30 (SEQ ID NO:35), and a β-globin polyadenylation signal downstream of UL42 (SEQ ID NO:36), and does not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 pVIII hexon associated precursor.

[0082] In some embodiments, the adenoviral helper plasmid of the disclosure has a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 58. In some embodiments, the adenoviral helper plasmid of the disclosure has the following components with nucleotide sequences at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 minipromoter (SEQ ID NO: 1), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region A (SEQ ID NO: 14), VA RNAI-A (SEQ ID NO: 16), VA RNAII-A (SEQ ID NO:18), a partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), a 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), E2a (SEQ ID NO:24; SEQ ID NO:25), a chicken β-actin promoter upstream of E2a, the UL30 gene from HSV-1 (SEQ ID NO:29; SEQ ID NO:30), the UL42 gene from HSV-1 (SEQ ID NO:31; SEQ ID NO:32), an SV40 promoter upstream of UL30 (SEQ ID NO:68), and a bovine growth hormone (bGH) polyadenylation signal downstream of UL42 (SEQ ID NO:69), and does not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3), penton periphery hexon-related gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 pVIII hexon-related precursor.

[0083] In some embodiments, the adenoviral helper plasmids of the disclosure have a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 59. In some embodiments, the adenoviral helper plasmids of the disclosure have the following components that have a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequence shown: E4 minipromoter (SEQ ID NO: 1), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region B (SEQ ID NO: 15), VA RNAI-B (SEQ ID NO: 17), VA RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), the chicken β-actin promoter upstream of E2a, the UL30 gene from HSV-1 (SEQ ID NO:29; SEQ ID NO:30), the UL42 gene from HSV-1 (SEQ ID NO:31; SEQ ID NO:32), the SV40 promoter upstream of UL30 (SEQ ID NO:68), and the bovine growth hormone (bGH) polyadenylation signal downstream of UL42 (SEQ ID NO:69), and does not contain or encode the following components: the fiber gene, the L1-52 / 55K (packaging protein 3) gene, the penton periphery hexon associated gene, the full-length L4 (hexon assembly) gene, the L4 encapsidation protein, the L4 pVIII hexon associated precursor, the DNA terminal protease, and the 23 kDa endoprotease fragment region.

[0084] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 60. In some embodiments, the adenovirus helper plasmid of the present disclosure has the following components with a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 minipromoter (SEQ ID NO: 1), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region B (SEQ ID NO: 15), VA RNAI-B (SEQ ID NO: 17), VA RNAII-B (SEQ ID NO: 19), E2a (SEQ ID NO: 24; SEQ ID NO: 25), SV40 polyadenylation signal downstream of E2a (SEQ ID NO: 28), chicken β-actin promoter upstream of E2a, UL30 gene derived from HSV-1 (SEQ ID NO: 29; SEQ ID NO: 30), UL42 gene derived from HSV-1 (SEQ ID NO: 31; SEQ ID NO: 32), SV40 promoter upstream of UL30 (SEQ ID NO: 68), and bovine growth hormone (bGH) polyadenylation signal downstream of UL42 (SEQ ID NO: 69), and does not contain or encode the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton base hexon-related gene, full-length L4 (hexon assembly) gene, L4 capsidation protein, L4 pVIII hexon-related precursor, DNA terminal protein, and 23 kDa endoprotease fragment region.

[0085] In some embodiments, the adenoviral helper plasmid of the disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 61. In some embodiments, the adenoviral helper plasmid of the disclosure has the following components that have a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequence shown: E4 minipromoter (SEQ ID NO: 1), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region A (SEQ ID NO: 14), VA RNAI-A (SEQ ID NO: 16), VA The UL42 gene from HSV-1 (SEQ ID NO:31; SEQ ID NO:32) contains the SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), the chicken β-actin promoter upstream of E2a, the UL30 gene from HSV-1 (SEQ ID NO:29; SEQ ID NO:30), the UL42 gene from HSV-1 (SEQ ID NO:31; SEQ ID NO:32), the SV40 promoter upstream of UL30 (SEQ ID NO:68), and the bovine growth hormone (bGH) polyadenylation signal downstream of UL42 (SEQ ID NO:69), and includes the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 It does not contain or encode the pVIII hexon-related precursor and the SV40 polyadenylation signal downstream of E2a.

[0086] In some embodiments, the adenoviral helper plasmid of the disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 62. In some embodiments, the adenoviral helper plasmid of the disclosure has the following components that have a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequence shown: E4 minipromoter (SEQ ID NO: 1), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region B (SEQ ID NO: 15), VA RNAI-B (SEQ ID NO: 17), VA The UL42 gene from HSV-1 (SEQ ID NO:31; SEQ ID NO:32) contains the SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), the chicken β-actin promoter upstream of E2a, the UL30 gene from HSV-1 (SEQ ID NO:29; SEQ ID NO:30), the UL42 gene from HSV-1 (SEQ ID NO:31; SEQ ID NO:32), the SV40 promoter upstream of UL30 (SEQ ID NO:68), and the bovine growth hormone (bGH) polyadenylation signal downstream of UL42 (SEQ ID NO:69), and includes the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, L4 It does not contain or encode the pVIII hexon-related precursor, DNA terminal protease, and 23 kDa endoprotease fragment regions, and the SV40 polyadenylation signal downstream of E2a.

[0087] In some embodiments, the adenovirus helper plasmid of the disclosure has a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 63. In some embodiments, the adenovirus helper plasmid of the disclosure has the following components with nucleotide sequences at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: SV40 promoter upstream of the E4 region (SEQ ID NO: 2), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region A (SEQ ID NO: 14), VA RNAI-A (SEQ ID NO: 16), VA The UL42 gene from HSV-1 (SEQ ID NO:31; SEQ ID NO:32) contains the SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), the chicken β-actin promoter upstream of E2a, the UL30 gene from HSV-1 (SEQ ID NO:29; SEQ ID NO:30), the UL42 gene from HSV-1 (SEQ ID NO:31; SEQ ID NO:32), the SV40 promoter upstream of UL30 (SEQ ID NO:68), and the bovine growth hormone (bGH) polyadenylation signal downstream of UL42 (SEQ ID NO:69), and includes the following components: fiber gene, L1-52 / 55K (packaging protein 3), penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, and L4 It does not contain or encode the pVIII hexon-related precursor, the SV40 polyadenylation signal downstream of E2a, and the E4 minipromoter upstream of the E4 region.

[0088] In some embodiments, the adenovirus helper plasmid of the disclosure has a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO: 64. In some embodiments, the adenovirus helper plasmid of the disclosure has the following components with nucleotide sequences at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: SV40 promoter upstream of the E4 region (SEQ ID NO: 2), L4 (33 kDa Ex2) (SEQ ID NO: 9; SEQ ID NO: 10), VA RNA region B (SEQ ID NO: 15), VA RNAI-B (SEQ ID NO: 17), VA The SV40 polyadenylation signal downstream of E2a (SEQ ID NO:28), the SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), the chicken β-actin promoter upstream of E2a, the UL30 gene from HSV-1 (SEQ ID NO:29), the UL42 gene from HSV-1 (SEQ ID NO:31), the SV40 promoter upstream of UL30 (SEQ ID NO:68), and the bovine growth hormone (bGH) polyadenylation signal downstream of UL42 (SEQ ID NO:69), and includes the following components: fiber gene, L1-52 / 55K (packaging protein 3) gene, penton periphery hexon associated gene, full-length L4 (hexon assembly) gene, L4 encapsidation protein, L4 It does not contain or encode the pVIII hexon-related precursor, DNA terminal protease, and 23 kDa endoprotease fragment regions, and the E4 minipromoter upstream of the E4 region.

[0089] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:65. In some embodiments, the adenovirus helper plasmids of the present disclosure comprise the following components having nucleotide sequences at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: E4 minipromoter (SEQ ID NO:1), L4 (33 kDa Ex2) (SEQ ID NO:9; SEQ ID NO:10), VA RNA region A (SEQ ID NO:14), VA RNAI-A (SEQ ID NO:16), VA RNAII-A (SEQ ID NO:18), partial DNA terminal protein (SEQ ID NO:20; SEQ ID NO:21), 23 kDa endoprotease fragment region (SEQ ID NO:22; SEQ ID NO:23), E2a (SEQ ID NO:24; SEQ ID NO:25), chicken β-actin promoter upstream of E2a, UL29 gene from HSV-1 (SEQ ID NO:37; SEQ ID NO:38), HSV TK promoter upstream of UL29 (SEQ ID NO:39), and HSV TK promoter downstream of UL29 (SEQ ID NO:40). It contains the TK polyadenylation signal (SEQ ID NO:40) and does not contain or encode the following components: the fiber gene, the L1-52 / 55K (packaging protein 3) gene, the penton periphery hexon-related gene, the full-length L4 (hexon assembly) gene, the L4 encapsidation protein, and the L4 pVIII hexon-related precursor.

[0090] In some embodiments, the adenovirus helper plasmid of the present disclosure has a nucleotide sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100% identical to SEQ ID NO:66. In some embodiments, the adenovirus helper plasmids of the disclosure comprise the following components having a nucleotide sequence at least 80%, 85%, 90%, 95%, 99%, or 100% identical to the sequences shown: an SV40 promoter upstream of the E4 region (SEQ ID NO:2), VA RNA region B (SEQ ID NO:15), VA RNAI-B (SEQ ID NO:17), VA RNAII-B (SEQ ID NO:19), E2a (SEQ ID NO:24; SEQ ID NO:25), an SV40 polyadenylation signal downstream of E2a (SEQ ID NO:28), an SV40 polyadenylation signal downstream of E4orf6 (SEQ ID NO:67), and a chicken β-actin promoter upstream of E2a, and the following components: a fiber gene, an L1-52 / 55K (packaging protein 3) gene, a penton periphery hexon associated gene, a full-length L4 (hexon assembly) gene, an L4 encapsidation protein, an L4 pVIII hexon-associated precursor, an L4 (33 kDa It does not contain or encode the DNA terminal protein and 23 kDa endoprotease fragment regions, the E4 mini-promoter upstream of the E4 region, the gene encoding E4orf1, the gene encoding E4orf2, and the gene encoding E4orf3.

[0091] Production method In some embodiments, the adenovirus helper plasmid of the present disclosure is useful in a method for producing rAAV. In some embodiments, the rAAV is produced by transfection of a producer cell. In some embodiments, the producer cell is a mammalian cell. In some embodiments, the producer cell is a transformed mammalian cell. In some embodiments, the producer cell is a Vero, HeLa, HEK293, HEK293T cell, or a derivative thereof.

[0092] In some embodiments, the method of producing rAAV includes transfecting a producer cell with an AAV vector plasmid, an AAVRep-Cap expression plasmid, and an adenovirus helper plasmid. In some embodiments, the AAV vector plasmid includes an AAV inverted terminal repeat (ITR) and a transgene of interest. In some embodiments, the adenovirus helper plasmid is any of the adenovirus helper plasmids described herein.

[0093] In some embodiments, the method of producing rAAV comprises transfecting a producer cell that stably expresses Rep-Cap. In some embodiments, the method of producing rAAV comprises transfecting a producer cell that stably expresses Rep-Cap with an AAV vector plasmid and an adenovirus helper plasmid. In some embodiments, the AAV vector plasmid comprises an AAV inverted terminal repeat (ITR) and a transgene of interest. In some embodiments, the adenovirus helper plasmid is any of the adenovirus helper plasmids described herein. EXAMPLES

[0094] The primary goal of the work described in this disclosure is to develop novel adenoviral helper plasmids for rAAV production that are smaller, contain fewer unnecessary adenoviral genes, and perform similarly or better than the most commonly used adenoviral helper plasmids.

[0095] The plasmids provided in this disclosure have been newly synthesized, sequence verified, and scaled up for use in large-scale rAAV production. rAAV production studies have been conducted to compare vector yields using the provided plasmids against other commercially available adenovirus helper plasmids. Also, vector quality and activity have been evaluated from rAAV produced using different adenovirus helper plasmids to ensure that the rAAV produced using the provided plasmids is at least comparable, if not superior, in quality. Taken together, these following examples demonstrate that the provided adenovirus helper plasmids, with their potentially safer and more cost-effective design, produce high yields and high quality rAAV.

[0096] Example 1: Exemplary methods for the production of rAAV using the adenovirus helper plasmids described herein HEK293 cells were transfected with a control adenoviral helper plasmid (e.g., a commercially available plasmid such as pALD-X80) or an adenoviral helper plasmid described herein. To generate AAV9 / ssCMV-GFP, adenoviral helper plasmids were co-transfected with pAAVrep2cap9 and pAAV-CMV-GFP plasmids using PEI transfection. Four days after transfection, HEK293 cells were harvested via 0.5% Triton® X-100 lysis and nuclease addition (to degrade RNA, cellular genomic DNA, and residual plasmid DNA). After 3 hours of lysis / nuclease treatment, cell lysates were sampled and submitted for qPCR titer analysis. Samples were treated with another nuclease, then EDTA, and heat treated, followed by qPCR of diluted samples to determine vector genome copy numbers per sample. Fluorescence microscopy was used to quantitate GFP-positive cells as a metric of transfection efficiency.

[0097] Example 2: Adenovirus helper plasmid lacking fiber, L1-52 / 55K, and peripenton hexon-related genes and carrying a partial L4 hexon-related precursor To reduce the size of the adenovirus helper plasmid, an adenovirus helper plasmid (pEMBR-1.2: SEQ ID NO: 41) was designed to lack the fiber gene, the L1-52 / 55K (packaging protein 3) gene, and most of the hexon-associated precursor, as well as the penton peripheral hexon-associated protein. These deletions were made in comparison to commercially available helper plasmids such as pXX6-80. The adenovirus helper genes were synthesized and assembled into a kanamycin-resistant plasmid backbone. The resulting plasmid is approximately 6.7 kb smaller than pXX6-80.

[0098] The adenovirus helper plasmids described above allowed the production of AAV in HEK293 cells. No significant differences in AAV vector yields were observed between cells transfected with pALD-X80 and pEMBR-1.2 as measured by qPCR (see FIG. 2). rAAV vectors produced in pEMBR-1.2 produced normal vectors with the correct ratio of VP proteins as observed when evaluating vector capsid purity by SDS-PAGE (see FIG. 3) and produced packaged transgenes of the correct size as observed when evaluating vector transgene purity by alkaline gel electrophoresis (see FIG. 3). Furthermore, pEMBR-1.2 allowed the production of fully functional vectors capable of transfecting cells. No differences were observed in the transfection of HEK293 cells to generate AAVRH.10 / ssCMV-GFP produced in pALD-X80 or pEMBR-1.2 (see FIG. 4).

[0099] Example 3: Adenovirus helper plasmid lacking fiber genes and most of the L4 (hexon assembly) gene To further reduce the size of the adenovirus helper plasmids, adenovirus helper plasmids were designed that lack the fiber gene, the L1-52 / 55K (packaging protein 3) gene, and most of the hexon-associated precursor and penton perihexon-associated proteins (as in pEMBR-1.2--see Example 2), and further lack the complete L4 (hexon assembly) region (pEMBR-1.3: SEQ ID NO: 42; see FIG. 5). A small fragment of the L4 region containing the E2A promoter, or partial L4 (33 kDa Ex2, SEQ ID NO: 9), has been retained.

[0100] To further optimize pEMBR-1.3, the VA RNA region of pEMBR-1.3 was replaced with the VA RNA region from AAV-2 (VA RNA-B: SEQ ID NO: 15). This version is designated pEMBR-1.3B (SEQ ID NO: 43; see FIG. 5). In this version, the AAV-2 VA RNAI (SEQ ID NO: 17) and VA RNA II (SEQ ID NO: 19) sequences were synthesized flanked by StuI and BsrGI sites (not flanked by DNA terminal protein or endoprotease gene sequences) and this insert was cloned into pEMBR-1.3.

[0101] Example 4: Adenovirus helper plasmid lacking fiber and L4 (hexon assembly) genes and containing the chicken β-actin promoter to drive E2a expression In order to improve the virus productivity of pEMBR-1.3 plasmid, an adenovirus helper plasmid (pEMBR-1.4: SEQ ID NO: 49; see FIG. 6) was designed that contains the features of pEMBR-1.3 and further contains a chicken β-actin promoter (SEQ ID NO: 26) upstream of the E2a gene to improve the expression of E2a protein. The chicken β-actin promoter was added to take into account the enhancer element in other parts of the L4 region that may have been deleted through removing most of the L4 region. Furthermore, it has been previously shown that E2A can be driven by an exogenous promoter (Gene Therapy. 1998.5, 938-945) and (Journal of Virology. 2007.Vol.81.No.21.11908-11916).

[0102] Another version of pEMBR-1.4 was constructed to contain the VA RNA region from AAV-2, as in pEMBR-1.3B, and is designated pEMBR-1.4B (SEQ ID NO:50; see Figure 6).

[0103] To further improve expression of E2A, another version of pEMBR-1.4 was constructed to contain an SV40 polyadenylation signal, designated pEMBR-1.4B2 (SEQ ID NO:51).

[0104] Example 5: Introduction of complementary accessory genes into modified adenovirus helper plasmids To further facilitate AAV production using the disclosed adenovirus helper plasmids, several complementary accessory genes were added to the minimized plasmids while ensuring that the size of the plasmids did not exceed the size of currently commercially available adenovirus helper plasmids (such as pALD-X80).

[0105] To improve replication of AAV transgenes even when cells are not in S phase, pEMBR-1.5 (SEQ ID NO: 57; see FIG. 7) adenovirus helper plasmid was designed to include the features described in pEMBR-1.4 with the addition of HSV-1 DNA polymerase genes (UL30 and UL42). The UL30 and UL42 genes were designed to be made as a single transcript (driven by the EF-1α core promoter and terminated by a rabbit β-globin polyadenylation signal) using a P2A cleavage site to separate the two HSV-1 polymerase proteins. Any number of promoters may be used, including CBA, CMV, PGK, etc., and any number of polyA sites may be used. Additional versions of pEMBR-1.5 (e.g., pEMBR-1.5A: SEQ ID NO: 58) were designed in which the UL30 and UL42 genes are driven by the SV40 promoter instead of the EF-1α core promoter.

[0106] Similar to the other "B" designs, an additional version of pEMBR-1.5B (pEMBR-1.5B: SEQ ID NO:59) was constructed to contain the smaller AAV-2 derived VA RNA I and II that are not flanked by the DNA terminal protein or endoprotease gene sequences.

[0107] An additional version of pEMBR-1.5B2 (pEMBR-1.5B2: SEQ ID NO: 60) was constructed to contain an SV40 polyadenylation signal for higher E2A expression, similar to the other "B2" designs.

[0108] Example 6: Addition of complementary accessory genes into modified adenovirus helper plasmids This example further confirms that removal of adenoviral helper genes resulting in smaller adenoviral helper plasmids allows for the addition of complementary genes to further improve AAV quality and yield. Specifically, from the pEMBR-1.2 and pEMBR-1.5a backbone plasmids, various pEMBR plasmids containing various complementary genes of various sizes (e.g., UL30, UL42, etc.) were designed and tested for AAV production.

[0109] The pEMBR-1.2B2 (SEQ ID NO:94) adenovirus helper plasmid was designed to contain the "B2" design, which includes an SV40 polyA site, potentially increasing expression of E2A, and a synthetic sequence for a smaller VA region (containing Ad2 VA RNA I and VA RNA II) that does not contain adjacent Ad terminal protein or endoprotease gene sequences. This region was synthesized flanked by StuI and BsrGI sites, and the insert was cloned into pEMBR-1.2 to generate pEMBR-1.2B2.

[0110] The pEMBR-1.2B2C (SEQ ID NO:95) adenovirus helper plasmid (see FIG. 8) was designed to include the "B2" design described above and the "C" design, which includes an SV40 poly(A) tail added after E4 ORF6 in the E4 region to increase expression of the E4 gene. This region was synthesized to reduce the amount of backbone sequence compared to the pEMBR-1.2 vector, further reducing the size of the plasmid. This E4 region was synthesized flanked by PacI and NotI sites for cloning into pEMBR-1.2B2.

[0111] The pEMBR-1.2B2D (SEQ ID NO:96) adenovirus helper plasmid (see FIG. 9) was designed to include the "B2" design described above and the "D" design, which includes an SV40 poly(A) tail added after the E4 ORF6 and an SV40 promoter added in the E4 region to increase expression of the E4 gene. This region was synthesized to reduce the amount of backbone sequence compared to the pEMBR-1.2 vector, further reducing the size of the plasmid. This E4 region was synthesized flanked by PacI and NotI sites for cloning into pEMBR-1.2B2.

[0112] Vector yields of AAV (e.g., AAV9) in clarified lysates, as measured by qPCR, are shown in Figures 17B and 18 using various pEMBR plasmids designed from the pEMBR-1.2 backbone. pEMBR-1.2B2, pEMBR-1.2B2C, and pEMBR-1.2B2D adenoviral helper plasmids resulted in comparable AAV production compared to pEMBR-1.2 plasmids. pEMBR-1.2B2, pEMBR-1.2B2C, and pEMBR-1.2B2D adenoviral helper plasmids resulted in comparable or greater AAV production compared to commercially available plasmids (e.g., pHelper).

[0113] The pEMBR-1.2C (SEQ ID NO:97) adenoviral helper plasmid was designed to contain a "C" design, similar to the other "C" designs described above. Additionally, the pEMBR-1.2D (SEQ ID NO:98) adenoviral helper plasmid was designed to contain a "D" design, similar to the other "D" designs described above.

[0114] Vector yields of AAV (e.g., AAV9) in clarified lysates, as measured by qPCR, are shown in Figures 17A and 18 using various pEMBR plasmids designed from the pEMBR-1.2 backbone. The pEMBR-1.2C and pEMBR-1.2D adenoviral helper plasmids resulted in comparable AAV production compared to the pEMBR-1.2 plasmid. The pEMBR-1.2C and pEMBR-1.2D adenoviral helper plasmids resulted in comparable or greater AAV production compared to commercially available plasmids (e.g., pHelper).

[0115] The pEMBR-1.5A (SEQ ID NO:58) adenovirus helper plasmid (see FIG. 10) was designed as described in Example 5. pEMBR-1.5A contains the HSV-1 DNA polymerase genes (UL30 and UL42) added to the pEMBR-1.4 plasmid (without hexon assembly, the exogenous promoter for E2a plus the nucleotide sequence encoding a fragment of L4 33 kDa Ex2 containing the E2a promoter region). The HSV-1 DNA polymerase genes (UL30 and UL42) were added back to the pEMBR-1.5A plasmid to support replication of the AAV transgene even when the cells were not in S phase. The UL30 and UL40 genes were designed to be made as a single transcript (driven by the SV40 promoter and terminated by bovine growth hormone polyA) using a P2A cleavage site to separate the two HSV-1 polymerase proteins. Any number of promoters may be used, including CBA, CMV, PGK, etc., and any number of poly A sites may be used.

[0116] Considering that both pEMBR-1.5A and pEMBR-1.4 produced AAV at substantially lower titers compared to pEMBR-1.2 (see Figures 17A and B), we reasoned that pEMBR-1.5A (essentially pEMBR-1.4 with the addition of UL30 and UL42 expression cassettes) produced AAV at substantially lower titers because the plasmid backbone was derived from pEMBR-1.4. Therefore, to test how the addition of UL30 and UL42 affects AAV titers, the UL30 and UL42 constructs were cloned into other plasmid versions that produced AAV at relatively high titers.

[0117] The pEMBR-1.55B2 (SEQ ID NO: 99) adenovirus helper plasmid (see FIG. 11) was generated by cloning the UL30 and UL42 expression cassettes from the pEMBR-1.5A plasmid into the pEMBR-1.2B2 backbone. The UL30 and UL42 regions were digested with blunt cut XmnI and PmeI from pEMBR-1.5A and cloned into pEMBR-1.2B2 at the blunted NdeI restriction site. The UL30 and UL42 genes were designed to be made as a single transcript (driven by the SV40 promoter and terminated by bovine growth hormone polyA) using a P2A cleavage site to separate the two HSV-1 polymerase proteins. Since this region contains both the promoter and polyA signal that drive expression of UL30 and UL42 independently of the rest of the plasmid, the orientation in which the constructs are cloned into the plasmid should in theory not affect expression, but a version in the opposite orientation was designed. The pEMBR-1.2B2 backbone, like other B2 version plasmids, contains the "B2" design described above.

[0118] The pEMBR-1.55B2 OO (SEQ ID NO:100) adenovirus helper plasmid (see FIG. 12) is essentially the same plasmid as the 1.55B2 plasmid, except that the UL30 and UL42 constructs were cloned in the opposite orientation (OO) into pEMBR-1.55B2-OO.

[0119] The pEMBR-1.55B2C (SEQ ID NO: 101) adenovirus helper plasmid (see FIG. 13) was generated by cloning the UL30 and UL42 expression cassettes from the pEMBR-1.5A plasmid into the pEMBR-1.2B2 backbone. The UL30 and UL42 regions were digested with blunt cut XmnI and PmeI from pEMBR-1.5A and cloned into pEMBR-1.2B2C at the blunted NdeI restriction site. The UL30 and UL42 genes were designed to be made as a single transcript (driven by the SV40 promoter and terminated by bovine growth hormone polyA) using the P2A cleavage site to separate the two HSV-1 polymerase proteins. Since this region contains both the promoter and polyA signal that drive expression of UL30 and UL42 independently of the rest of the plasmid, the orientation in which the constructs are cloned into the plasmid should in theory not affect expression, but a version in the opposite orientation was designed. The pEMBR-1.2B2C backbone contains the "B2" and "C" designs described above, as do the other B2C version plasmids.

[0120] The pEMBR-1.55B2C OO (SEQ ID NO: 102) adenovirus helper plasmid (see FIG. 14) is essentially the same plasmid as the 1.55B2C plasmid, except that the UL30 and UL42 constructs were cloned in the opposite orientation (OO) into pEMBR-1.55B2C-OO.

[0121] The pEMBR-1.55B2D (SEQ ID NO: 103) adenovirus helper plasmid (see FIG. 15) was generated by cloning the UL30 and UL42 expression cassettes from the pEMBR-1.5A plasmid into the pEMBR-1.2B2 backbone. The UL30 and UL42 regions were digested with blunt cut XmnI and PmeI from pEMBR-1.5A and cloned into pEMBR-1.2B2 at the blunted NdeI restriction site. The UL30 and UL42 genes were designed to be made as a single transcript (driven by the SV40 promoter and terminated by bovine growth hormone polyA) using the P2A cleavage site to separate the two HSV-1 polymerase proteins. Since this region contains both the promoter and polyA signal that drive expression of UL30 and UL42 independently of the rest of the plasmid, the orientation in which the constructs are cloned into the plasmid should in theory not affect expression, but a version in the opposite orientation was designed. The pEMBR-1.2B2D backbone contains the "B2" and "D" designs described above, as do the other B2D version plasmids.

[0122] The pEMBR-1.55B2D OO (SEQ ID NO: 104) adenovirus helper plasmid (see FIG. 16) is essentially the same plasmid as the 1.55B2D plasmid, except that the UL30 and UL42 constructs were cloned into pEMBR-1.55B2D-OO in the opposite orientation (OO).

[0123] Vector yields of AAV (e.g., AAV9) in clarified lysates, as measured by qPCR, are shown in FIG. 17C using various pEMBR plasmids designed with the pEMBR-1.5A UL30 and UL42 expression cassettes. pEMBR-1.55B2, pEMBR-1.55B2C, and pEMBR-1.55B2D adenoviral helper plasmids resulted in higher AAV production compared to the pEMBR-1.5A plasmid. pEMBR-1.55B2, pEMBR-1.55B2C, and pEMBR-1.55B2D adenoviral helper plasmids resulted in equal or higher AAV production compared to the pEMBR-1.2 plasmid.

[0124] Example 7: Sequence Listing The following sequence listing lists and describes the various sequences discussed herein. Unless otherwise stated, all sequences are listed in the 5' to 3' orientation of the positive strand of the plasmid. This orientation is maintained regardless of the orientation of the gene or element described as being associated with the sequence. As used herein, an asterisk indicates a stop codon. [Table 1-1] [Table 1-2] [Table 1-3] [Table 1-4] [Table 1-5] [Table 1-6] [Table 1-7] [Table 1-8] [Table 1-9]

Table 1-10

Table 1-11

Table 1-12

Table 1-13

Table 1-14

Table 1-15

Table 1-16

Table 1-17

Table 1-18

Table 1-19

Table 1-20

Table 1-21

Table 1-22

Table 1-23

Table 1-24

Table 1-25

Table 1-26

Table 1-27

Table 1-28

Table 1-29

Table 1-30

Table 1-31

Table 1-32

Table 1-33

Table 1-34

Table 1-35

Table 1-36

Table 1-37

Table 1-38

Table 1-39

Table 1-40

Table 1-41

Table 1-42

Table 1-43

Table 1-44

Table 1-45

Table 1-46

Table 1-47

Table 1-48

Table 1-49

Table 1-50

Table 1-51

Table 1-52

Table 1-53

Table 1-54

Table 1-55

Table 1-56

Table 1-57

Table 1-58

Table 1-59

Table 1-60

Table 1-61

Table 1-62

Table 1-63

Table 1-64

Table 1-65

Table 1-66

Table 1-67

Table 1-68

Table 1-69

Table 1-70

Table 1-71

Table 1-72

Table 1-73

Table 1-74

Table 1-75

Table 1-76

Table 1-77

Table 1-78

Table 1-79

Table 1-80

Table 1-81

Table 1-82

Table 1-83

Table 1-84

Table 1-85

Table 1-86

Table 1-87

Table 1-88

Table 1-89

Table 1-90

Table 1-91

Table 1-92

Table 1-93

Table 1-94

Table 1-95

Table 1-96

Table 1-97

Table 1-98

Table 1-99

Table 1-100

Table 1-101

Table 1-102

Table 1-103

Table 1-104

Table 1-105

Table 1-106

Table 1-107

Table 1-108

Table 1-109

Table 1-110

Table 1-111

Table 1-112

Table 1-113

Table 1-114

Table 1-115

Table 1-116

Table 1-117

Table 1-118

Table 1-119

Table 1-120

Table 1-121

Table 1-122

Table 1-123

Table 1-124

Table 1-125

Table 1-126

Table 1-127

Table 1-128

Table 1-129

Table 1-130

Table 1-131

Table 1-132

Table 1-133

Table 1-134

Table 1-135

Table 1-136

Table 1-137

Table 1-138

Table 1-139

Table 1-140

Table 1-141

Table 1-142

Table 1-143

Table 1-144

Table 1-145

Table 1-146

Table 1-147

Table 1-148

Table 1-149

Table 1-150

Table 1-151

Table 1-152

Table 1-153

Table 1-154

Table 1-155

Table 1-156

Table 1-157

Table 1-158

Table 1-159

Table 1-160

Table 1-161

Table 1-162

Table 1-163

Table 1-164

Table 1-165

Table 1-166

Table 1-167

Table 1-168

Table 1-169

Table 1-170

Table 1-171

Table 1-172

Table 1-173

Table 1-174

Table 1-175

Table 1-176

Table 1-177

Table 1-178

Table 1-179

Table 1-180

Table 1-181

Table 1-182

Table 1-183

Table 1-184

Table 1-185

Table 1-186

Table 1-187

Table 1-188

Table 1-189

Table 1-190

Table 1-191

Table 1-192

Table 1-193

Table 1-194

Table 1-195

Table 1-196

Table 1-197

Table 1-198

Table 1-199

Table 1-200

Table 1-201

Table 1-202

Table 1-203

Table 1-204

Table 1-205

Table 1-206

Table 1-207

Table 1-208

Table 1-209

Table 1-210

Table 1-211

Table 1-212

Table 1-213

Table 1-214

Table 1-215

Table 1-216

Table 1-217

Table 1-218

Table 1-219

Table 1-220

Table 1-221

Table 1-222

Table 1-223

Table 1-224

Table 1-225

Table 1-226

Table 1-227

Table 1-228

Table 1-229

Table 1-230

Table 1-231

Table 1-232

Table 1-233

Table 1-234

Table 1-235

Table 1-236

Table 1-237

Table 1-238

Table 1-239

Table 1-240

Table 1-241

Table 1-242

Table 1-243

Table 1-244

Table 1-245

Table 1-246

Table 1-247

Table 1-248

Table 1-249

Table 1-250

Table 1-251

Table 1-252

Table 1-253

Table 1-254

Table 1-255

Table 1-256

Table 1-257

Table 1-258

Table 1-259

Table 1-260

Table 1-261

Table 1-262

Table 1-263

Table 1-264

Table 1-265

Table 1-266

Table 1-267

Table 1-268

Table 1-269

Table 1-270

Table 1-271

Table 1-272

Table 1-273

Table 1-274

Table 1-275

Table 1-276

Table 1-277

Table 1-278

Table 1-279

Table 1-280

Table 1-281

Table 1-282

Table 1-283

Table 1-284

Table 1-285

Table 1-286

Table 1-287

Table 1-288

Table 1-289

Table 1-290

Table 1-291

Table 1-292

Table 1-293

Table 1-294

Table 1-295

Table 1-296

Table 1-297

Table 1-298

Table 1-299

Table 1-300

Table 1-301

Table 1-302

Table 1-303

Table 1-304

Table 1-305

Table 1-306

Table 1-307

Table 1-308

Table 1-309

[0125] Equivalent Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. The scope of the invention is not intended to be limited to the above description, but is set forth in the claims that follow.

Claims

1. (a) the E2a protein, (b) E4 area, (c) a VA RNA region, and (d) an adenovirus helper plasmid comprising a nucleotide sequence encoding an L4 region, The adenovirus helper plasmid Fibrous proteins or portions thereof, L1-52 / 55K (packaging protein 3), and The adenovirus helper plasmid does not contain a nucleotide sequence encoding one or more of:

2. 2. The adenovirus helper plasmid of claim 1, wherein the VA RNA region comprises a nucleotide sequence that is at least 80% identical to SEQ ID NO:

14.

3. The VA RNA region is (a) a VA RNAI nucleotide sequence that is at least 80% identical to SEQ ID NO: 16; (b) a VA RNAII nucleotide sequence that is at least 80% identical to SEQ ID NO:

18. The adenovirus helper plasmid of claim 2.

4. 2. The adenovirus helper plasmid of claim 1, wherein the VA RNA region comprises a nucleotide sequence that is at least 80% identical to SEQ ID NO:

15.

5. The VA RNA region is (a) a VA RNAI nucleotide sequence that is at least 80% identical to SEQ ID NO:17; (b) a VA RNAII nucleotide sequence that is at least 80% identical to SEQ ID NO:

19.

6. 2. The adenovirus helper plasmid of claim 1, wherein the L4 region comprises a nucleotide sequence encoding an L4 (hexon assembly) protein having an amino acid sequence that is at least 80% identical to SEQ ID NO:

4.

7. 2. The adenovirus helper plasmid of claim 1, wherein the L4 region comprises a nucleotide sequence encoding a partial L4 (hexon assembly) protein having an amino acid sequence that is at least 80% identical to SEQ ID NO:

6.

8. 2. The adenovirus helper plasmid of claim 1, wherein the L4 region comprises a nucleotide sequence encoding a partial hexon-related precursor (L4 pVIII) protein having an amino acid sequence that is at least 80% identical to SEQ ID NO:

13.

9. 8. The adenovirus helper plasmid of claim 7, wherein the nucleotide sequence encoding the partial L4 (hexon assembly) protein comprises an E2a promoter region.

10. 2. The adenovirus helper plasmid of claim 1, wherein the adenovirus helper plasmid comprises a nucleotide sequence encoding a partial DNA-terminal protein having an amino acid sequence that is at least 80% identical to SEQ ID NO:

21.

11. The adenovirus helper plasmid of claim 1 , wherein the adenovirus helper plasmid does not contain a nucleotide sequence encoding a DNA terminal protein.

12. 2. The adenovirus helper plasmid of claim 1, wherein the adenovirus helper plasmid comprises a nucleotide sequence encoding a partial 23 kDa endoprotease having an amino acid sequence that is at least 80% identical to SEQ ID NO:

23.

13. The adenovirus helper plasmid of claim 1 , wherein the adenovirus helper plasmid does not contain a nucleotide sequence encoding a 23 kDa endoprotease.

14. The adenovirus helper plasmid of claim 1 , wherein the expression of the E2a protein is under the control of the E2a promoter.

15. 2. The adenovirus helper plasmid of claim 1, wherein the expression of the E2a protein is under the control of an E2a promoter and a chicken β-actin promoter, and the chicken β-actin promoter is upstream of the E2a promoter.

16. The adenovirus helper plasmid of claim 1, wherein the expression of the E2a protein is under the control of the chicken β-actin promoter.

17. The adenovirus helper plasmid of claim 15, wherein the chicken β-actin promoter has a nucleotide sequence that is at least 80% identical to SEQ ID NO:

26.

18. The adenovirus helper plasmid of claim 1 , wherein the adenovirus helper plasmid comprises an E2a polyadenylation signal downstream of the E2a.

19. 2. The adenovirus helper plasmid of claim 1, wherein the adenovirus helper plasmid contains an SV40 polyadenylation signal downstream of the E2a.

20. 19. The adenovirus helper plasmid of claim 18, wherein the SV40 polyadenylation signal is downstream of the E2a polyadenylation signal.

21. 20. The adenovirus helper plasmid of claim 19, wherein the SV40 polyadenylation signal has a sequence that is at least 80% identical to SEQ ID NO:

28.

22. further comprising a nucleotide sequence encoding HSV-1 UL30 and HSV-1 UL42, the UL30 has an amino acid sequence at least 80% identical to SEQ ID NO:30; the UL42 has an amino acid sequence at least 80% identical to SEQ ID NO:32; 2. The adenovirus helper plasmid of claim 1, wherein the UL30 and the UL42 are separated by a P2A cleavage site having an amino acid sequence that is at least 80% identical to SEQ ID NO:

34.

23. The adenovirus helper plasmid of claim 22, wherein the expression of said UL30 and said UL42 is under the control of the EF-1α promoter of said plasmid.

24. The adenovirus helper plasmid of claim 23, wherein the EF-1α promoter has a nucleotide sequence that is at least 80% identical to SEQ ID NO:

35.

25. The adenovirus helper plasmid of claim 22, further comprising a β-globin polyadenylation signal downstream of the UL42, the β-globin polyadenylation signal having a nucleotide sequence that is at least 80% identical to SEQ ID NO:

36.

26. further comprising a nucleotide sequence encoding HSV-1 UL29, 2. The adenovirus helper plasmid of claim 1, wherein the UL29 has an amino acid sequence that is at least 80% identical to SEQ ID NO:

38.

27. 27. The adenovirus helper plasmid of claim 26, wherein expression of the UL29 is under the control of the HSV TK promoter of the plasmid.

28. 28. The adenovirus helper plasmid of claim 27, wherein the HSV-TK promoter has a nucleotide sequence that is at least 80% identical to SEQ ID NO:

39.

29. 27. The adenovirus helper plasmid of claim 26, further comprising an HSV TK polyadenylation signal downstream of the UL29, the HSV TK polyadenylation signal having a nucleotide sequence that is at least 80% identical to SEQ ID NO:

40.

30. 2. The adenovirus helper plasmid of claim 1, wherein the E4 region does not include E4orf1 and the E4 region does not include E4orf2.

31. 2. The adenovirus helper plasmid of claim 1, wherein the E4 region is operably linked to the E4 mini-promoter, the E4 mini-promoter having a nucleotide sequence that is at least 80% identical to SEQ ID NO:

1.

32. 2. The adenovirus helper plasmid of claim 1, wherein the E4 region is operably linked to the SV40 promoter, the SV40 promoter having a nucleotide sequence that is at least 80% identical to SEQ ID NO:

2.

33. The following adenoviral DNA sequences or regions: (a) E2a, (b) the E4 region, and (c) an adenovirus helper plasmid comprising a VA RNA region, The adenovirus helper plasmid comprises the following components: Fibers or parts thereof, L1-52 / 55K (packaging protein 3), Peripenton hexon-associated protein, and The adenovirus helper plasmid does not contain one or more of the following:

34. An adenovirus helper plasmid having 80% sequence identity to any one of SEQ ID NOs: 41-66.

35. 1. A method for producing a recombinant adenovirus-associated viral vector, comprising: The method comprises transfecting a producer cell with an AAV vector plasmid, an AAV Rep-Cap expression plasmid, and an adenovirus helper plasmid according to any one of claims 1 to 34.

36. 36. The method of claim 35, wherein the AAV vector plasmid comprises an AAV inverted terminal repeat (ITR) and a transgene of interest.

37. 1. A method for producing a recombinant adenovirus-associated viral vector, comprising: transfecting a producer cell with an AAV vector plasmid and an adenovirus helper plasmid according to any one of claims 1 to 34, The method, wherein the producing cells stably express Rep-Cap.

38. 38. The method of claim 37, wherein the AAV vector plasmid comprises an AAV inverted terminal repeat (ITR) and a transgene of interest.

39. 2. The adenovirus helper plasmid of claim 1, wherein the L4 region comprises a nucleotide sequence that is at least 80% identical to SEQ ID NO:3, and the nucleotide sequence encodes an L4 (hexon assembly) protein.

40. 2. The adenovirus helper plasmid of claim 1, wherein the L4 region comprises a nucleotide sequence that is at least 80% identical to SEQ ID NO:5, and the nucleotide sequence encodes a partial L4 (hexon assembly) protein.

41. 2. The adenovirus helper plasmid of claim 1, wherein the L4 region comprises a nucleotide sequence that is at least 80% identical to SEQ ID NO:12, and the nucleotide sequence encodes a partial hexon-related precursor (L4 pVIII) protein.

42. 2. The adenovirus helper plasmid of claim 1, wherein the adenovirus helper plasmid comprises a nucleotide sequence that is at least 80% identical to SEQ ID NO:20, and the nucleotide sequence encodes a partial DNA terminal protein.

43. 2. The adenovirus helper plasmid of claim 1, wherein the adenovirus helper plasmid comprises a nucleotide sequence that is at least 80% identical to SEQ ID NO:22, and the nucleotide sequence encodes a partial 23 kDa endoprotease.

44. the adenovirus helper plasmid further comprises a nucleotide sequence encoding HSV-1 UL30 and HSV-1 UL42; at least one of the nucleotide sequences is at least 80% identical to SEQ ID NO:29; at least one of the nucleotide sequences is at least 80% identical to SEQ ID NO:31; 2. The adenovirus helper plasmid of claim 1, wherein the UL30 and the UL42 are separated by a P2A cleavage site encoded by a nucleic acid sequence that is at least 80% identical to SEQ ID NO:

33.

45. the adenovirus helper plasmid further comprises a nucleotide sequence encoding HSV-1 UL29; 2. The adenovirus helper plasmid of claim 1, wherein the nucleotide sequence is at least 80% identical to SEQ ID NO:

37.

46. The adenovirus helper plasmid of any one of claims 1 to 34 and 39 to 45, wherein the adenovirus helper plasmid comprises a resistance gene.

47. 47. The adenovirus helper plasmid of claim 46, wherein the resistance cassette is a kanamycin resistance gene.

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