Panomic genome incidence score
A machine learning model utilizing molecular profiling data and a voting methodology enhances the accuracy of tissue-of-origin identification in carcinoma of unknown primary, addressing the limitations of current RNA-based assays and improving diagnostic and treatment outcomes.
Patent Information
- Application Number
- JP2025191689
- Authority / Receiving Office
- JP · JP
- Patent Type
- Applications
- Current Assignee / Owner
- Priority Date
- 2021-02-03
- Filing Date
- 2025-11-12
- Publication Date
- 2026-02-10
AI Technical Summary
Current methods for identifying the primary tumor origin in carcinoma of unknown primary (CUP) are hampered by low accuracy and limited sample availability, particularly in RNA-based assays, leading to suboptimal treatment regimens and poor patient outcomes.
A machine learning model is trained using comprehensive molecular profiling data to predict biological sample attributes, employing a voting methodology to combine multiple classifier models for enhanced accuracy in tissue-of-origin identification.
The approach provides a more robust method for predicting primary tumor origin, organ type, and histological findings, improving diagnostic efficiency and treatment efficacy by leveraging machine learning and molecular profiling.
Smart Images

Figure 2026021557000001_ABST
Abstract
Description
[Technical Field]
[0001] Priority claims This application claims the benefit of U.S. Provisional Patent Application Nos. 62 / 977,015, filed February 14, 2020; 63 / 014,515, filed April 23, 2020; 63 / 052,363, filed July 15, 2020; and 63 / 145,305, filed February 3, 2021; the entire contents of which are incorporated herein by reference in their entirety.
[0002] This application is related to International Patent Publication WO / 2020 / 146554, which is based on International Patent Application PCT / US2020 / 012815, filed January 8, 2020, entitled Genomic Profiling Similarity, the entire contents of which are incorporated herein by reference in their entirety.
[0003] Technical Field The present disclosure relates to the fields of data structures, data processing, and machine learning and their uses in precision medicine, for example, in tumor characterization, including the use of molecular profiling to predict attributes of biological samples such as, but not limited to, primary origin, organ type, histological findings, and / or cancer type. [Background technology]
[0004] background Carcinoma of unknown primary (CUP) represents a clinically challenging group of heterogeneous metastatic malignancies in which the primary tumor remains elusive despite extensive clinical and pathological evaluation. Approximately 2–4% of cancer diagnoses worldwide involve CUP. See, for example, Varadhachary. New Strategies for Carcinoma of Unknown Primary: the Role of Tissue of Origin Molecular Profiling. Clin Cancer Res. 2013 Aug 1;19(15):4027–33. In addition, a degree of diagnostic uncertainty regarding accurate tumor type classification frequently occurs across oncology subspecialties. Efforts to secure a definitive diagnosis can prolong the diagnostic process and delay the initiation of treatment. Furthermore, CUP is associated with poor outcomes, which may be explained by the use of suboptimal therapeutic interventions. Immunohistochemistry (IHC) testing is the gold standard method for diagnosing the site of tumor origin, especially in poorly differentiated or undifferentiated tumors. Evaluation of accuracy in difficult cases and meta-analysis of these studies reported that IHC analysis has an accuracy of 66% in characterizing metastatic tumors. For example, Brown RW, et al. Immunohistochemical identification of tumor markers in metastatic adenocarcinoma: a diagnostic adjunct in the determination of primary site. Am J Clin Pathol 1997, 107:12e19 (Non-Patent Document 2); Dennis JL, et al. Markers of adenocarcinoma characteristic of the site of origin: development of a diagnostic algorithm. Clin Cancer Res 2005, 11:3766e3772 (Non-Patent Document 3); Gamble AR, et al.See Use of tumor marker immunoreactivity to identify primary site of metastatic cancer. BMJ 1993, 306:295-298 (Non-Patent Document 4); Park SY, et al. Panels of immunohistochemical markers help determine primary sites of metastatic adenocarcinoma. Arch Pathol Lab Med 2007, 131:1561-1567 (Non-Patent Document 5); DeYoung BR, Wick MR. Immunohistologic evaluation of metastatic carcinomas of unknown origin: an algorithmic approach. Semin Diagn Pathol 2000, 17:184-193 (Non-Patent Document 6); Anderson GG, Weiss LM. Determining tissue of origin for metastatic cancers: meta-analysis and literature review of immunohistochemistry performance. Appl Immunohistochem Mol Morphol 2010, 18:3-8 (Non-Patent Document 7). This represents an important unmet clinical need, as treatment regimens may depend on the diagnosis.
[0005] To address these challenges, assays aimed at tissue-of-origin (TOO) identification based on assessment of differential gene expression have been developed and clinically tested. However, the integration of such assays into clinical practice has been hampered by relatively poor performance characteristics (83%–89%) and limited sample availability. For example, Pillai R, et al. Validation and reproducibility of a microarray-based gene expression test for tumor identification in formalin-fixed, paraffin-embedded specimens. J Mol Diagn 2011, 13:48e56 (Non-Patent Document 8); Rosenwald S, et al. Validation of a microRNA-based qRT-PCR test for accurate identification of tumor tissue origin. Mod Pathol 2010, 23:814e823 (Non-patent document 9); Kerr SE, et al. Multisite validation study to determine performance characteristics of a 92-gene molecular cancer classifier. Clin Cancer Res 2012, 18:3952e3960 (Non-patent document 10); Kucab JE, et al. A Compendium of Mutational Signatures of Environmental Agents. Cell. 2019 May 2;177(4):821-836.e16 (Non-Patent Document 11). For example, a recent commercially available RNA-based assay had a sensitivity of 83% in a test set of 187 tumors and confirmed results in only 78% of a validation set of 300 independent samples.See Hainsworth JD, et al., Molecular gene expression profiling to predict the tissue of origin and direct site-specific therapy in patients with carcinoma of unknown primary site: a prospective trial of the Sarah Cannon research institute. J Clin Oncol. 2013 Jan 10;31(2):217-23 (Non-Patent Document 12). This may be at least partially a result of limitations of typical RNA-based assays related to normal cell contamination, RNA stability, and RNA expression kinetics. Thus, there is a need for a more robust approach to TOO identification to assist cancer patients (particularly, but not limited to, those with CUP).
[0006] A machine learning model can be configured to analyze labeled training data and then draw inferences from the training data. Once a machine learning model has been trained, an unlabeled dataset can be provided to the machine learning model as input. The machine learning model can process input data, such as molecular profiling data, and perform predictions about the input based on inferences learned during training. The present disclosure further provides a voting methodology for combining multiple classifier models to achieve more accurate classification than can be achieved by using a single model.
[0007] Comprehensive molecular profiling provides rich data about the molecular state of patient samples. The inventors have performed such profiling on well over 100,000 tumor patients from virtually all cancer lines. Machine learning algorithms can be used to process patient and molecular data to identify additional biomarker signatures that can be used to characterize various phenotypes of interest. Here, this "next-generation profiling" (NGP) approach is applied to build models that predict biological sample attributes, including but not limited to primary origin, organ type, histological findings, and / or cancer type. [Prior art documents] [Non-patent literature]
[0008] [Non-Patent Document 1] Varadhachary. New Strategies for Carcinoma of Unknown Primary: the role of tissue of origin molecular profiling. Clin Cancer Res. 2013 Aug 1;19(15):4027-33 [Non-patent document 2] Brown RW, et al. Immunohistochemical identification of tumor markers in metastatic adenocarcinoma: a diagnostic adjunct in the determination of primary site. Am J Clin Pathol 1997, 107:12e19 [Non-patent document 3] Dennis JL, et al. Markers of adenocarcinoma characteristic of the site of origin: development of a diagnostic algorithm. Clin Cancer Res 2005, 11:3766e3772
Non-Patent Document 4
Non-Patent Document 5
Non-Patent Document 6
Non-Patent Document 7
Non-Patent Document 8
[0009] overview Comprehensive molecular profiling provides rich data about the molecular state of a patient sample. Such data can be compared with the patient's response to a treatment to identify biomarker signatures that predict response or non-response to such treatment. Herein, the inventors provide systems and methods for predicting attributes of patient samples, including, but not limited to, tissue of origin (TOO).
[0010] In one aspect, the present disclosure provides a data processing apparatus for generating an input data structure for use in training a machine learning model to predict at least one attribute of a biological sample, wherein the at least one attribute is selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histology finding, and any combination thereof, the data processing apparatus comprising one or more processors and one or more storage devices that store instructions that, when executed by the one or more processors, cause the one or more processors to perform operations, the operations including: obtaining, by the data processing apparatus, one or more biomarker data structures and one or more sample data structures; obtaining, by the data processing apparatus, first data representing one or more biomarkers associated with the sample from the one or more biomarker data structures, second data representing sample data from the one or more sample data structures, and at least one biomarker to be predicted. and adjusting, by the data processing device, one or more parameters of the machine learning model based on the difference between the third data representing the at least one predicted attribute for the sample and the output generated by the machine learning model.In some embodiments, the set of one or more biomarkers comprises one or more biomarkers listed in any one of Tables 121-129, Tables 117-120, INSM1, any table selected from Tables 2-116, and any combination thereof, optionally the set of one or more biomarkers comprises one or more biomarkers listed in any one of Tables 117, 118, 119, 120, INSM1, or any combination thereof. In some embodiments, the set of one or more biomarkers comprises each of the biomarkers. In some embodiments, the set of one or more biomarkers comprises at least one of these biomarkers, optionally the set of one or more biomarkers comprises each of the biomarkers in Tables 118, 119, 120, and INSM1, and optionally the set of one or more biomarkers further comprises a marker in any table selected from Tables 2-116.
[0011] In one aspect, the present disclosure provides a data processing apparatus for generating an input data structure for use in training a machine learning model to predict at least one attribute of a biological sample, wherein the at least one attribute is selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histology finding, and any combination thereof, the data processing apparatus comprising one or more processors and one or more storage devices storing instructions that, when executed by the one or more processors, cause the one or more processors to perform an operation, the operation comprising: obtaining, by the data processing apparatus, a first data structure structuring data representing a set of one or more biomarkers associated with the biological sample from a first distributed data source, the first data structure including a key value that identifies the sample; storing, by the data processing apparatus, the first data structure in one or more memory devices; and storing, by the data processing apparatus, at least one attribute of the sample having the one or more biomarkers from a second distributed data source. obtaining a second data structure structuring data representing data about attributes, wherein the data about at least one attribute includes data identifying the sample, at least one attribute, and an indicator of the at least one attribute to be predicted, and the second data structure also includes a key value identifying the sample; storing, by the data processing device, the second data structure in one or more memory devices; generating, by the data processing device and using the first data structure and the second data structure stored in the memory device, a labeled training data structure including (i) data representing the set of one or more biomarkers and the sample, and (ii) a label providing an indicator of the at least one attribute to be predicted, wherein the data processing device correlates, by the data processing device, the first data structure structuring data representing the set of one or more biomarkers associated with the sample with the second data structure representing at least one attribute data to be predicted of the sample having the one or more biomarkers based on the key value identifying the subject;and training, by the data processing device, a machine learning model using the generated labeled training data structure, the step comprising providing, by the data processing device and to the machine learning model, the generated labeled training data structure as an input to the machine learning model. In some embodiments, the operation further comprises obtaining, by the data processing device and from the machine learning model, an output generated by the machine learning model based on processing by the machine learning model of the generated labeled training data structure; and determining, by the data processing device, a difference between the output generated by the machine learning model and a label providing an indication of the at least one predicted attribute. In some embodiments, the operation further comprises adjusting, by the data processing device, one or more parameters of the machine learning model based on the determined difference between the output generated by the machine learning model and the label providing an indication of the at least one predicted attribute. In some embodiments, the set of one or more biomarkers comprises one or more biomarkers listed in any one of Tables 121-129, Tables 117-120, INSM1, any table selected from Tables 2-116, and any combination thereof, optionally the set of one or more biomarkers comprises one or more biomarkers listed in any one of Tables 117, 118, 119, 120, INSM1, or any combination thereof. In some embodiments, the set of one or more biomarkers comprises each of the biomarkers. In some embodiments, the set of one or more biomarkers comprises at least one of these biomarkers, optionally the set of one or more biomarkers comprises each of the biomarkers in Tables 118, 119, 120, and INSM1, and optionally the set of one or more biomarkers further comprises a marker in any table selected from Tables 2-116.
[0012] The present disclosure also provides a method including steps corresponding to each of the above operations. The present disclosure also provides a system including one or more computers and one or more storage media storing instructions that, when executed by the one or more computers, cause the one or more computers to perform each of the above operations. The present disclosure also provides a non-transitory computer-readable medium storing software including instructions executable by one or more computers that, when executed, cause one or more computers to perform the above operations.
[0013] In one aspect, the present disclosure provides a method for determining at least one attribute of a biological sample, the at least one attribute being selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histological examination finding, and any combination thereof, the method comprising: for each specific machine learning model of a plurality of machine learning models, each model being trained to perform a predictive operation between received input data representing the sample and the at least one attribute, providing input data representing the sample of a subject to the specific machine learning model, wherein the sample is obtained from a tissue or organ of the subject; and obtaining output data generated by the specific machine learning model based on processing of the provided input data by the specific machine learning model, the output data representing a probability or likelihood that the sample represented by the provided input data corresponds to the at least one attribute; providing the output data obtained for each of the plurality of machine learning models to a voting unit, wherein the provided output data includes data representing initial sample attributes determined by each of the plurality of machine learning models; and determining, by the voting unit and based on the provided output data, the at least one attribute to be predicted. In some embodiments, the at least one predicted attribute is determined by applying a majority rule to the provided output data, by using the provided output data as input to a dynamic voting model, or by a combination thereof. In some embodiments, determining the at least one predicted attribute by the voting unit and based on the provided output data includes: determining, by the voting unit, a number of occurrences of each initial attribute class of a plurality of candidate attribute classes; and selecting, by the voting unit, an initial attribute class of the plurality of candidate attribute classes that has the most occurrences. In some embodiments, each machine learning model of the plurality of machine learning models comprises a random forest classification algorithm, a boosted tree, a support vector machine, a logistic regression, a k-nearest neighbor model, an artificial neural network, a naive Bayes model, a quadratic discriminant analysis, a Gaussian process model, or any combination thereof.In some embodiments, each machine learning model of the plurality of machine learning models comprises a random forest classification algorithm. In some embodiments, each machine learning model of the plurality of machine learning models comprises a boosted tree classification algorithm. In some embodiments, the plurality of machine learning models comprises multiple representations of the same type of classification algorithm. In some embodiments, the input data represents (i) sample attributes and (ii) a description of origin. In some embodiments, the plurality of candidate attribute classes comprises at least one class for prostate, bladder, endocervix, peritoneum, stomach, esophagus, ovary, parietal lobe, cervix, endometrium, liver, sigmoid colon, superior lateral quadrant of breast, uterus, pancreas, pancreatic head, rectum, colon, breast, intrahepatic bile duct, cecum, gastroesophageal junction, frontal lobe, kidney, pancreatic tail, ascending colon, descending colon, gallbladder, appendix, rectosigmoid colon, fallopian tube, brain, lung, temporal lobe, lower third of esophagus, superior medial quadrant of breast, transverse colon, and skin. In some aspects, the plurality of candidate attribute classes comprises at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or all 21 of breast adenocarcinoma, central nervous system cancer, cervical adenocarcinoma, bile duct carcinoma, colon adenocarcinoma, gastroesophageal adenocarcinoma, gastrointestinal stromal tumor (GIST), hepatocellular carcinoma, lung adenocarcinoma, melanoma, meningioma, ovarian granulosa cell tumor, ovarian and fallopian tube adenocarcinoma, pancreatic adenocarcinoma, prostate adenocarcinoma, renal cell carcinoma, squamous cell carcinoma, thyroid cancer, urothelial carcinoma, endometrial adenocarcinoma, and uterine sarcoma. In some embodiments, the sample attributes include one or more biomarkers for the sample, and optionally the one or more biomarkers include one or more biomarkers listed in any one of Tables 121-129, Tables 117-120, INSM1, any table selected from Tables 2-116, and any combination thereof, and optionally the set of one or more biomarkers includes one or more biomarkers listed in any one of Table 117, Table 118, Table 119, Table 120, INSM1, or any combination thereof. In some embodiments, the set of one or more biomarkers includes each of the biomarkers.In some embodiments, the set of one or more biomarkers includes at least one of these biomarkers, and optionally, the set of one or more biomarkers includes each of the biomarkers in Table 118, Table 119, Table 120, and INSM1, and optionally, the set of one or more biomarkers further includes a marker in any table selected from Tables 2-116. In some embodiments, the input data further includes data representing a description of the sample and / or subject. The present disclosure also provides systems including one or more computers and one or more storage media storing instructions that, when executed by the one or more computers, cause the one or more computers to perform each of the above operations. The present disclosure also provides non-transitory computer-readable media storing software including one or more computer-executable instructions that, when executed, cause one or more computers to perform the above operations.
[0014] 1. In one aspect, the present disclosure provides a method for classifying a biological sample, the method including: acquiring, by one or more computers, first data representing one or more initial classifications of the biological sample previously determined based on an RNA sequence of the biological sample; acquiring, by the one or more computers, second data representing another initial classification of the biological sample previously determined based on a DNA sequence of the biological sample; providing, by the one or more computers, at least a portion of the first data and the second data as input to a dynamic voting engine trained to predict a target biological sample classification based on processing of the plurality of initial biological sample classifications; processing, by the one or more computers, the provided input data through the dynamic voting engine; acquiring, by the one or more computers, output data generated by the dynamic voting engine based on processing by the dynamic voting engine of the provided input data; and determining, by the one or more computers, a target biological sample classification of the biological sample based on the acquired output data. In some embodiments, obtaining, by one or more computers, first data representing one or more initial classifications of the biological sample determined in advance based on the RNA sequence of the biological sample includes obtaining data representing a cancer type classification of the biological sample based on the RNA sequence of the biological sample; obtaining data representing an organ of origin of the biological sample based on the RNA sequence of the biological sample; and obtaining data representing a histology of the biological sample based on the RNA sequence of the biological sample, and providing at least a portion of the first data and the second data as input to the dynamic voting engine includes providing the data representing the obtained cancer type classification, the data representing the organ of origin of the obtained biological sample, the data representing the obtained histology, and the second data as input to the dynamic voting engine. In some embodiments, the dynamic voting engine includes one or more machine learning models.In some embodiments, training the dynamic voting engine includes obtaining labeled training data items including one or more initial classifications, including data indicating a cancer classification type, data indicating an initial organ of origin, data indicating histological examination findings, or data indicating the output of a DNA analysis engine, and (II) a target biological sample classification; generating training input data for input to the dynamic voting engine based on the obtained training data items; processing the generated training input data through the dynamic voting engine; obtaining output data generated by the dynamic voting engine based on the processing of the generated training input data by the dynamic voting engine; and adjusting one or more parameters of the dynamic voting engine based on the level of similarity between the output data and the labels of the obtained training data items.
[0015] In some embodiments, the step of pre-determining an initial classification of the biological sample based on a DNA sequence of the biological sample includes receiving, by one or more computers, biological signatures representative of biological samples obtained from cancerous neoplasms in a first part of the body, wherein the model includes a cancer biological signature for each of a plurality of different types of cancerous biological samples, each cancer biological signature comprising at least a first cancer biological signature representative of a molecular profile of a cancerous biological sample from one or more other first parts of the body and a second cancer biological signature representative of a molecular profile of a cancerous biological sample from one or more other second parts of the body. The method includes receiving a file containing a first cancer biological signature and a second cancer biological signature representing the file; performing, by one or more computers and using a pairwise analysis model, a pairwise analysis of the biological signatures using the first cancer biological signature and the second cancer biological signature; generating, by one or more computers and based on the performed pairwise analysis, a likelihood that the cancerous neoplasm in the first part of the body is caused by a cancer in the second part of the body; and storing, by one or more computers, the generated likelihood in a memory device. The present disclosure also provides a system including one or more computers and one or more storage media storing instructions that, when executed by the one or more computers, cause the one or more computers to perform each of the above operations. The present disclosure also provides a non-transitory computer-readable medium storing software including one or more computer-executable instructions that, when executed, cause the one or more computers to perform the above operations.
[0016] In one aspect, the present disclosure provides a method including: (a) obtaining a biological sample from a subject having cancer; (b) performing at least one assay on the sample to evaluate one or more biomarkers, thereby obtaining a biosignature of the sample; (c) providing the biosignature to a model trained to predict at least one attribute of cancer, wherein the model includes at least one predetermined biosignature indicative of the at least one attribute, and the at least one attribute of cancer is selected from the group including primary tumor origin, cancer / disease type, organ group, histological examination findings, and any combination thereof; (d) processing the provided biosignature through the model by one or more computers; and (e) outputting from the model a prediction of the at least one attribute of the cancer.
[0017] In the methods provided herein, the biological sample may include formalin-fixed paraffin-embedded (FFPE) tissue, fixed tissue, core needle biopsy, fine needle aspirate, unstained slide, fresh frozen (FF) tissue, formalin sample, tissue contained in a solution that preserves nucleic acid or protein molecules, fresh sample, malignant fluid, body fluid, tumor sample, tissue sample, or any combination thereof. In some embodiments, the biological sample includes cells, body fluid, or a combination thereof from a solid tumor. In some embodiments, the body fluid includes malignant fluid, pleural fluid, peritoneal fluid, or any combination thereof. In some embodiments, the bodily fluid comprises peripheral blood, serum, plasma, ascites, urine, cerebrospinal fluid (CSF), sputum, saliva, bone marrow, synovial fluid, aqueous humor, amniotic fluid, earwax, breast milk, bronchoalveolar lavage fluid, semen, prostatic fluid, Cowper's fluid, pre-ejaculatory fluid, female ejaculate, sweat, feces, tears, cyst fluid, pleural fluid, peritoneal fluid, pericardial fluid, lymph, chyme, chyle, bile, interstitial fluid, menses, pus, sebum, vomit, vaginal fluid, mucosal secretions, stool, pancreatic juice, sinus lavage, bronchopulmonary aspirate, blastocyst cavity fluid, or umbilical cord blood.
[0018] In the methods provided herein, performing at least one assay in step (b) can include determining the presence, level, or status of a protein or nucleic acid for each of the one or more biomarkers, optionally where the nucleic acid comprises deoxyribonucleic acid (DNA), ribonucleic acid (RNA), or a combination thereof. In some embodiments, the presence, level, or status of at least one of the proteins is determined using a technique selected from immunohistochemistry (IHC), flow cytometry, immunoassay, antibody or functional fragment thereof, aptamer, mass spectrometry, or any combination thereof, and optionally the presence, level, or status of all of the proteins is determined using the technique; and / or the presence, level, or status of at least one of the nucleic acids is determined using a technique selected from polymerase chain reaction (PCR), in situ hybridization, amplification, hybridization, microarray, nucleic acid sequencing, dye termination sequencing, pyrosequencing, next generation sequencing (NGS; high-throughput sequencing), whole exome sequencing, whole genome sequencing, whole transcriptome sequencing, or any combination thereof, and optionally the presence, level, or status of all of the nucleic acids is determined using the technique. In some embodiments, the state of a nucleic acid comprises a sequence, a mutation, a polymorphism, a deletion, an insertion, a substitution, a translocation, a fusion, a truncation, a duplication, an amplification, a repeat, a copy number, a copy number variation (CNV; copy number alteration; CNA), or any combination thereof. In some embodiments, the state of a nucleic acid consists of or comprises a copy number.In some embodiments, at least one assay comprises next generation sequencing, optionally using next generation sequencing to evaluate: i) at least one of the genes, genomic information / signatures, and fusion transcripts in any of Tables 121-130, or any combination thereof; ii) at least one of the genes and / or transcripts in any table selected from Tables 117-120, INSM1, and any combination thereof; iii) the whole exome or substantially the whole exome; iv) the whole transcriptome or substantially the whole transcriptome; v) at least one gene in any table selected from Tables 2-116, and any combination thereof; or vi) any combination thereof.
[0019] In the methods provided herein, predicting at least one attribute of cancer may include determining the probability that the attribute is a member of each of a plurality of such attributes, and selecting the attribute with the highest probability.
[0020] In some embodiments of the methods provided herein, the primary tumor origin or multiple primary tumor origins are from the prostate, bladder, endocervix, peritoneum, stomach, esophagus, ovary, parietal lobe, cervix, endometrium, liver, sigmoid colon, superior lateral quadrant of the breast, uterus, pancreas, head of the pancreas, rectum, colon, breast, intrahepatic bile duct, cecum, gastroesophageal junction, frontal lobe, kidney, tail of the pancreas, ascending colon, descending colon, gallbladder, appendix, rectosigmoid colon , fallopian tubes, brain, lungs, temporal lobe, lower third of esophagus, superior medial quadrant of breast, transverse colon, and skin 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34 , 35, 36, 37, or 38, or 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, or includes all 38, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, or all 38.In some embodiments, the primary tumor origin or multiple primary tumor origins are one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, or fourteen of breast adenocarcinoma, central nervous system cancer, cervical adenocarcinoma, bile duct carcinoma, colon adenocarcinoma, gastroesophageal adenocarcinoma, gastrointestinal stromal tumor (GIST), hepatocellular carcinoma, lung adenocarcinoma, melanoma, meningioma, ovarian granulosa cell tumor, ovarian and fallopian tube adenocarcinoma, pancreatic adenocarcinoma, prostate adenocarcinoma, renal cell carcinoma, squamous cell carcinoma, thyroid carcinoma, urothelial carcinoma, endometrial adenocarcinoma, and uterine sarcoma. , 15, 16, 17, 18, 19, 20, or 21, or including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or 21, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or 21. In some embodiments, the type of cancer / disease is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, six, seven, eight, nine, ten, eleven, twelve, thirteen, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, nineteen, twenty, twenty-one of: adrenocortical carcinoma; bile duct, cholangiocarcinoma; breast cancer; central nervous system (CNS); cervical cancer; colon cancer; endometrial cancer; gastrointestinal stromal tumor (GIST); gastroesophageal cancer; kidney renal cell carcinoma; liver hepatocellular carcinoma; lung cancer; melanoma; meningioma; Merkel; neuroendocrine; ovarian granulosa cell tumor; ovarian, fallopian tube, peritoneal; pancreatic cancer; pleural mesothelioma; prostate adenocarcinoma; retroperitoneal; salivary and parotid glands; small intestine adenocarcinoma; squamous cell carcinoma; thyroid cancer; urothelial carcinoma; uterine , 22, 23, 24, 25, 26, 27, or all 28, consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 2 7 or all 28, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, or all 28.In some embodiments, the organ group is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, or more of the following: adrenal gland; bladder; brain; breast; colon; eye; female reproductive tract and peritoneum (FGTP); gastroesophageal; head, face or neck, NOS; kidney; liver, gallbladder, ducts; lung; pancreas; prostate; skin; small intestine; thyroid. or all 17, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or all 17, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or all 17. In some embodiments, the histological examination findings are one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, six, seven, eight, nine, ten, eleven, twelve, thirteen, thirteen, fourteen, fifteen, six, seven, seven, eight, nine, ten, eleven, twelve, thirteen ... , 25, 26, 27, 28, or 29, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, or or all 29, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, or all 29.
[0021] In some embodiments of the methods provided herein, at least one predetermined biosignature indicative of at least one attribute of cancer, where optionally the at least one attribute is the type of cancer / disease, the biosignature comprises a selection of biomarkers according to Table 118, and optionally: i. the predetermined biosignature indicative of adrenocortical carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 112000, 113000, 114000, 115000, consisting of 1, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ii. The predetermined biosignature indicative of bile duct, cholangiocarcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 11209, 11309, 11409, 11509 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iii. the predetermined biosignature indicative of breast cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, GATA3, ANKRD30A, KRT15, KRT7, S100A2, PAX8, MUC4, KRT18, HNF1B, S100A1, PIP, SOX2, MDM2, MUC5AC, PMEL, TFF1, KRT16, KRT6B, S100A6, and SERPINB5; consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iv. The predetermined biosignature indicative of the central nervous system (CNS) is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, consisting of 1, 16, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; v. The predetermined biosignature indicative of cervical cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of ESR1, CDKN2A, CCND1, LIN28A, PGR, SMARCB1, CEACAM4, S100B, FUT4, PSAP, MUC2, MDM2, NCAM1, SATB2, TNFRSF8, CD79A, S100A13, VHL, CD3G, and TPSAB1. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vi. The predetermined biosignature indicative of colon cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 1 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vii. The predetermined biosignature indicative of endometrial cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18, or a combination thereof, including PAX8, PGR, ESR1, VHL, CALD1, LIN28B, NAPSA, KRT5, S100A6, DES, FLI1, DSC3, S100P, CEACAM16, PDPN, ARG1, TLE1, WT1, BCL6, and MLH1. consisting of 1, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; viii. The predetermined biosignature indicative of gastrointestinal stromal tumor (GIST) is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, ANO1, SDC1, KRT19, MUC1, KRT8, ACVRL1, KIT, CDH1, S100A2, KRT7, ERBB2, S100A16, ENO2, S100A9, TPSAB1, KRT17, PAX8, PGR, ESR1, and VHL; consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ix. The predetermined biosignature indicative of gastroesophageal cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or consisting of 1, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; x. The predetermined biosignature indicative of kidney renal cell carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, or 16 of: PAX8, CDH1, CDKN2A, S100P, S100A14, HAVCR1, HNF1B, KL, KRT7, MUC1, POU5F1, VHL, PAX2, AMACR, BCL6, S100A13, CA9, MDM2, SALL4, and SYP. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xi. The predetermined biosignature indicative of liver hepatocellular carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, consisting of 5, 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xii. The predetermined biosignature indicative of lung cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 of: NAPSA, SOX2, CEACAM7, KRT7, S100A10, CEACAM6, S100A1, PAX8, AR, VHL, S100A13, CD99L2, KRT5, MUC1, CEACAM1, SFTPA1, TMPRSS2, TFF1, KRT15, and MUC4. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiii. The predetermined biosignature indicative of melanoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of S100B, KRT8, PMEL, KRT19, MUC1, MLANA, S100A14, S100A13, MITF, S100A1, VIM, CDKN2A, ACVRL1, MS4A1, POU5F1, TPM1, UPK3A, S100P, GATA3, and CEACAM1. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiv. The predetermined biosignature indicative of meningioma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 51, or 52, or 53, or 54, or 55, or 56, or 57, or 58, or 59, or 60, or 61, or 62, or 63, or 64, or 65, or 66, or 67, or 68, or 69, or 70, or 71, or 72, or 73, or 74, or 75, or 76, or 77, or 78, or 79, or 80, or 81, or 82, or 83, or 84, or 85, or 86, or 87, or 88, or 89, or 90, or 91, or 92, or 93, or 94, or 95, or 96, or 97, or 98, or 99, or 100, or 100, or 100, or 110, or consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xv. The predetermined biosignature indicative of Merkel cell carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of ISL1, ERBB2, S100A12, S100A14, MYOG, SDC1, KRT7, S100PBP, MME, TMPRSS2, CEACAM5, CPS1, CR1, MUC4, CEACAM4, CA9, ENO2, FLI1, LIN28B, and MLANA. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xvi. The neuroendocrine predetermined biosignature is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of NCAM1, ISL1, ENO2, POU5F1, TFF3, SYP, TPM4, S100A1, S100Z, MUC4, MPO, DSC3, CEACAM4, S100A7, ERBB2, CDX2, S100A11, KRT10, CEACAM5, and CEACAM3. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xvii. The predetermined biosignature indicative of ovarian granulosa cell tumor is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, or 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 51, or 52, or 53, or 54, or 55, or 56, or 57, or 58, or 59, or 60, or 61, or 62, or 63, or 64, or 65, or 66, or 67, or 68, or 69, or 70, or 71, or 72, or 73, or 74, or 75, or 76, or 77, or 78, or 79, or 80, or 81, or 82, or 83, or 84, or 85, or 86, or 87, or 88, or 89, or 90, or 91, or 92, or 93, or 94, or 95, or 96, or 97, or 98, or 99, or 100, or 100, or consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xviii. A predetermined biosignature indicative of ovary, fallopian tube, or peritoneum is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of WT1, PAX8, INHA, TFE3, S100A13, FOXL2, TLE1, MSLN, POU5F1, CEACAM3, ALPP, S100A10, FUT4, NKX3-1, CEACAM5, SOX2, ESR1, ENO2, ACVRL1, and SYP. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xix. The predetermined biosignature indicative of pancreatic cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xx. The predetermined biosignature indicative of pleural mesothelioma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, or 16 of UPK3B, CALB2, WT1, SMARCB1, PDPN, INHA, CEACAM1, MSLN, KRT5, CA9, S100A13, SF1, CDH1, CDKN2A, FLI1, SYP, CEACAM3, CPS1, SATB2, and BCL6. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxi. The predetermined biosignature indicative of prostate adenocarcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of: KRT7, KLK3, NKX3-1, AMACR, S100A5, MUC1, MUC2, UPK3A, KL, CPS1, MSLN, PMEL, CNN1, SERPINA1, KRT2, CGB3, TMPRSS2, CEACAM6, SDC1, and AR. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxii. The predetermined biosignature indicative of the retroperitoneum is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18, or a combination thereof. consisting of 1, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxiii. The predetermined biosignature indicative of salivary and parotid glands is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 11 consisting of 1, 16, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxiv. The predetermined biosignature indicative of small intestine adenocarcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 11 consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxv. The predetermined biosignature indicative of squamous cell carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxvi. The predetermined biosignature indicative of thyroid cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 11 consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxvii. The predetermined biosignature indicative of urothelial carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18, or a combination thereof; consisting of 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; and / or xxviii. The predetermined biosignature indicative of uterus is selected from KRT19, KRT18, NCAM1, DES, FOXL2, CD79A, S100A14, ESR1, MSLN, MITF, UPK3B, TPM1, ENO2, S100P, MLH1, KRT8, CDH1, TPM4, SATB2, and MDM2. consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features.
[0022] In some embodiments of the methods provided herein, at least one predetermined biosignature indicative of at least one attribute of cancer, where optionally the at least one attribute is organ type, the biosignature comprises a selection of biomarkers according to Table 119, and optionally includes: i. The predetermined biosignature indicative of the adrenal gland is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 12 consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ii. the predetermined biosignature indicative of bladder is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120 consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iii. the predetermined biosignature indicative of brain is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of: KRT8, ANO1, S100B, S100A14, SOX2, PDPN, CEACAM1, S100A2, NCAM1, MSH2, KRT18, NKX2-2, WT1, S100A1, GPC3, TLE1, CD5, S100Z, S100A16, and PGR; , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iv. The predetermined biosignature indicative of breast is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 11209, 11309, 11409, 11509, 11609, 11 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; v. The predetermined biosignature indicative of the colon is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 51, or 52, or 53, or 54, or 55, or 56, or 57, or 58, or 59, or 60, or 61, or 62, or 63, or 64, or 65, or 66, or 70, or 71, or 72, or 73, or 74, or 75, or 76, or 77, or 78, or 79, or 80, or 81, or 82, or 83, or 84, or 85, or 86, or 87, or 88, or 89, or 90, or 91, or 92, or 93, or 94, or 95, or 96, or 97, or 98, or 99, or 100, or 100, or 101, or 102, or 103, or 10 , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vi. The predetermined biosignature indicative of an eye is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 1109, 1111, 112, 113, 114, 115, 116, 117, 118, 119, consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vii. A predetermined biosignature indicative of female reproductive tract and peritoneum (FGTP) is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 1 consisting of 1, 16, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; viii. the predetermined biosignature indicative of gastroesophageal disease is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ix. A predetermined biosignature indicative of head, face, or neck, NOS is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14 of: KRT5, DSC3, TP63, HNF1B, MUC5AC, PAX5, KRT15, PGR, S100A6, TMPRSS2, MME, S100B, ENO2, CEACAM8, SALL4, ANO1, GATA3, LIN28B, CD99L2, and UPK3A. , consisting of 15, 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; x. The predetermined biosignature indicative of kidney is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17 of PAX8, CDH1, HNF1B, S100A14, HAVCR1, CDKN2A, S100P, KL, KRT7, S100A13, VHL, PAX2, POU5F1, MUC1, AMACR, ENO2, MDM2, WT1, SYP, and AR. , 18, 19, or 20 features, or comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xi. The predetermined biosignature indicative of liver, gallbladder, or duct is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 selected from SERPINA1, VIL1, HNF1B, ANO1, ESR1, SOX2, MUC4, S100A2, ENO2, CNN1, POU5F1, KRT5, S100A9, UPK3B, PSAP, KRT7, KL, TMPRSS2, SATB2, and S100A14; consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xii. the predetermined biosignature indicative of lung is selected from NAPSA, SOX2, SFTPA1, VHL, S100A1, S100A10, AR, TMPRSS2, CD99L2, CEACAM7, CEACAM6, KRT6A, KRT7, NCAM2, TP63, CEACAM1, MUC4, KRT20, CNN1, and ISL1; consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiii. the predetermined biosignature indicative of pancreas is selected from PDX1, ANO1, SERPINA1, GATA3, ISL1, MUC5AC, SMAD4, FUT4, CD5, SMN1, NKX2-2, TFF1, AMACR, SOX2, HNF1B, S100Z, MSLN, DES, S100A4, and CALB2; consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiv. The predetermined biosignature indicative of prostate is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 510, or 520, or 530, or 540, or 550, or 560, or 570, or 580, or 590, or 600, or 610, or 620, or 630, or 640, or 650, or 660, or 670, or 680, or 690, or 700, or 710, or 720, or 730, or 740, or 750, or 760, or 770, or 780, or 790, or 800, or 810, or 820, or 830, or 840, or 850, or 860, or 870, or 880, or 890, or 900, or 910, or 920, or 930, or 940, or 95 consisting of 1, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xv. The predetermined biosignature indicative of skin is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of: S100B, KRT8, PMEL, KRT7, KRT19, GATA3, MDM2, AMACR, TPM1, TLE1, CEACAM19, CEACAM16, MLANA, TMPRSS2, AR, TFF3, BCL6, CR1, NCAM1, and MS4A1. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xvi. The predetermined biosignature indicative of the small intestine is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, and 18, including: MUC2, CDH17, FLI1, KRT20, CDX2, CD5, KRT7, MPO, CNN1, DSC3, DES, ANO1, S100A1, CALD1, TFF1, SPN, MITF, TMPRSS2, CALB2, and CEACAM16. , 19, or 20 features, or comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; and / or xvii. The predetermined biosignature indicative of thyroid is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or consisting of 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features.
[0023] In some embodiments of the methods provided herein, at least one predetermined biosignature indicative of at least one attribute of cancer, where optionally the at least one attribute is a histology finding, the biosignature comprises a selection of biomarkers according to Table 120, and optionally: i. the predetermined biosignature indicative of adenocarcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ii. the predetermined biosignature indicative of adenoid cystic carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 11 consisting of 1, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iii. the predetermined biosignature indicative of adenosquamous carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 11209, 11309, 11409, 11509, 1 consisting of 1, 16, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iv. The predetermined biosignature indicative of adrenocortical carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 11209, 11309, 11409, 11509, 11 consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; v. The predetermined biosignature indicative of astrocytoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 11209, 11309, 11409, 11509, 11609, consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vi. The predetermined biosignature indicative of cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of GATA3, MITF, MUC5AC, PDPN, VIL1, CEACAM5, CDH1, CDH17, IL12B, S100P, KRT20, KRT7, SPN, TMPRSS2, ENO2, NKX2-2, PMEL, IMP3, BCL6, and S100A8. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vii. the predetermined biosignature indicative of carcinosarcoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, KRT6B, GPC3, MSLN, MUC1, S100A6, S100A2, MME, CDKN2A, CDH1, FOXL2, KRT7, CALB2, SFTPA1, ERG, PGR, KRT17, NAPSA, CALD1, LIN28B, and KIT; consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; viii. The predetermined biosignature indicative of cholangiocarcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ix. The predetermined biosignature indicative of clear cell carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or consisting of 1, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; x. The predetermined biosignature indicative of ductal carcinoma in situ (DCIS) is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14 of: GATA3, HNF1B, DES, MME, ANKRD30A, SATB2, SOX2, NCAM2, PAX8, CEACAM4, PIP, MUC4, NKX3-1, SERPINA1, KRT20, KIT, NCAM1, KRT14, S100A2, and CDKN2A. , consisting of 15, 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xi. The predetermined biosignature indicative of glioblastoma (GBM) is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of S100B, KRT18, PDPN, NKX2-2, SOX2, NCAM1, KRT8, ERBB2, KRT15, KRT19, GATA3, CDKN2A, BCL6, S100A14, KRT10, UPK3A, SF1, CA9, CCND1, and KRT5. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xii. The predetermined biosignature indicative of a GIST is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiii. The predetermined biosignature indicative of glioma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of: KRT8, S100B, SYP, NCAM2, CD3G, SDC1, SOX2, CEACAM1, POU5F1, MIB1, SATB2, MDM2, NCAM1, KRT7, CGB3, CPS1, PDPN, CALCA, ERBB2, and TNFRSF8. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiv. The predetermined biosignature indicative of granulosa cell tumor is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of: FOXL2, SDC1, MSH6, KRT18, KRT8, MME, FLI1, S100A9, CALCA, S100B, CCND1, CEACAM21, TLE1, SERPINA1, S100A11, SFTPA1, SYP, NCAM2, CD3G, and SOX2. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xv. The predetermined biosignature indicative of invasive lobular carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 112000, 113000, 114000, 115000 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xvi. The predetermined biosignature indicative of leiomyosarcoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xvii. The predetermined biosignature indicative of liposarcoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of: KRT18, MDM2, CDK4, CDH1, KRT19, KRT7, PDPN, CD34, TPM4, CR1, ACVRL1, MME, KRT8, AMACR, CEACAM5, S100B, OSCAR, LIN28A, S100A12, and SDC1. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xviii. The predetermined biosignature indicative of melanoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, or 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 51, or 52, or 53, or 54, or 55, or 56, or 57, or 58, or 59, or 60, or 61, or 62, or 63, or 64, or 65, or 66, or 67, or 68, or 69, or 70, or 71, or 72, or 73, or 74, or 75, or 76, or 77, or 78, or 79, or 80, or 81, or 82, or 83, or 84, or 85, or 86, or 87, or 88, or 89, or 90, or 91, or 92, or 93, or 94, or 95, or 96, or 97, or 98, or 99, or 100, or 100, or 101, or consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xix. The predetermined biosignature indicative of meningioma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 51, or 52, or 53, or 54, or 55, or 56, or 57, or 58, or 59, or 60, or 61, or 62, or 63, or 64, or 65, or 66, or 67, or 68, or 69, or 70, or 71, or 72, or 73, or 74, or 75, or 76, or 77, or 78, or 79, or 80, or 81, or 82, or 83, or 84, or 85, or 86, or 87, or 88, or 89, or 90, or 91, or 92, or 93, or 94, or 95, or 96, or 97, or 98, or 99, or 100, or 100, or 101, or 102, or consisting of 1, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xx. The predetermined biosignature indicative of Merkel cell carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 1 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxi. The predetermined biosignature indicative of mesothelioma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 51, or 52, or 53, or 54, or 55, or 56, or 57, or 58, or 59, or 60, or 61, or 62, or 63, or 64, or 65, or 66, or 70, or 71, or 72, or 73, or 74, or 75, or 76, or 77, or 78, or 79, or 80, or 81, or 82, or 83, or 84, or 85, or 86, or 87, or 88, or 89, or 90, or 91, or 92, or 93, or 94, or 95, or 96, or 97, or 98, or 99, or 100, or 100, or 101, or 102, or 103, or 104 consisting of 1, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxii. The neuroendocrine predetermined biosignature is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 11209, 11309, 11409, 11509, 11609, 11 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxiii. The predetermined biosignature indicative of non-small cell carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxiv. The predetermined biosignature indicative of oligodendroglioma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxv. A predetermined biosignature indicative of sarcoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of: NCAM1, KRT19, S100A14, NKX2-2, KRT2, KRT7, SATB2, MYOG, CALD1, CEACAM19, CA9, KRT15, CDKN2A, S100P, WT1, TMPRSS2, S100A7, SERPINB5, DSC3, and ENO2. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxvi. The predetermined biosignature indicative of sarcomatoid carcinoma is selected from one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, or fifteen of MME, VIM, S100A14, CD99L2, S100A11, NKX3-1, SATB2, CPS1, MSLN, SFTPA1, POU5F1, CDH1, OSCAR, S100A5, IMP3, CEACAM1, PMS2, NCAM2, KRT15, and S100A12. consisting of 1, 16, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxvii. the predetermined biosignature indicative of serous fluid is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, WT1, PAX8, KRT7, CDKN2A, MSLN, ACVRL1, SATB2, CDK4, DSC3, AR, S100A16, ANO1, S100A5, SDC1, IMP3, SERPINA1, KRT4, ESR1, FOXL2, and KRT15; consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxviii. The predetermined biosignature indicative of small cell carcinoma is selected from the group consisting of NCAM1, ISL1, PAX5, KIT, MUC4, S100A10, MUC1, CTNNB1, MITF, NKX2-2, S100A11, SMN1, MSLN, S100A6, BCL2, SYP, KL, CGB3, TPSAB1, and TFF3. consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; and / or xxix. The predetermined biosignature indicative of squamous epithelium is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of TP63, KRT5, KRT17, SOX2, AR, CD3G, KRT6A, S100A1, DSC3, SERPINB5, HNF1B, SDC1, S100A6, TPSAB1, KRT20, HAVCR1, TTF1, MSH2, PMS2, and CNN1. , 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features. The systems and methods provided herein contemplate any combination of the above predetermined biosignatures. See, e.g., Figures 4A-C and related documents.
[0024] When selecting biomarkers from among the predetermined biosignatures provided herein, the biomarkers that provide the most useful predictions can be selected. For example, the top 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, such as 3, 5, 10, or 20 features, or at least 3, 5, 10, or 20 features, having the highest importance values for each predetermined biosignature listed in Tables 118-120 can be selected.
[0025] In some embodiments of the methods provided herein, performing at least one assay to evaluate one or more biomarkers in step (b), including but not limited to those described above with respect to Tables 118-120, comprises evaluating markers in at least one predetermined biosignature using DNA analysis and / or expression analysis, wherein i. the DNA analysis consists of or includes determining sequence, mutation, polymorphism, deletion, insertion, substitution, translocation, fusion, truncation, duplication, amplification, repeat, copy number, copy number variation (CNV; copy number alteration; CNA), or any combination thereof; ii. the DNA analysis is performed using polymerase chain reaction (PCR), in situ hybridization, amplification, hybridization, microarray, nucleic acid sequencing, dye termination sequencing, pyrosequencing, next generation sequencing (NGS; high-throughput sequencing), whole exome sequencing, or any combination thereof; and / or iii. the expression analysis consists of or includes analysis of RNA, and optionally, i. and / or ii. the RNA analysis consists of or comprises determining the sequence, mutation, polymorphism, deletion, insertion, substitution, translocation, fusion, truncation, duplication, amplification, repeat, copy number, amount, level, expression level, presence, or any combination thereof; and / or ii. the RNA analysis is performed using polymerase chain reaction (PCR), in situ hybridization, amplification, hybridization, microarray, nucleic acid sequencing, dye termination sequencing, pyrosequencing, next generation sequencing (NGS; high-throughput sequencing), whole transcriptome sequencing, or any combination thereof; iv. the expression analysis consists of or comprises the analysis of proteins, and optionally, i. the protein analysis consists of or comprises determining the sequence, mutation, polymorphism, deletion, insertion, substitution, fusion, amplification, amount, level, expression level, presence, or any combination thereof; and / or ii.Protein analysis is performed using immunohistochemistry (IHC), flow cytometry, immunoassay, antibody or functional fragment thereof, aptamer, mass spectrometry, or any combination thereof; and / or v. any combination thereof. In some embodiments, performing an assay to evaluate one or more biomarkers in step (b) comprises evaluating markers in at least one predetermined biosignature using a combination of DNA analysis and RNA analysis; a combination of DNA analysis and protein analysis; a combination of RNA analysis and protein analysis; or a combination of DNA analysis, RNA analysis, and protein analysis. In some embodiments, performing an assay to evaluate one or more biomarkers in step (b) comprises RNA analysis of messenger RNA transcripts.
[0026] In some embodiments of the methods provided herein, the at least one predetermined biosignature indicative of at least one attribute of cancer, optionally cancer type or primary tumor origin, comprises a selection of biomarkers according to at least one of Figures 6I-AC; Optionally, i. a predetermined biosignature indicative of breast adenocarcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from GATA3, CDH1, PAX8, KRAS, ELK4, CCND1, MECOM, PBX1, CREBBP, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from GATA3, NY-BR-1, KRT15, CK7, S100A2, RCCMa, MUC4, CK18, HNF1B, and S100A1; ii. the predetermined biosignature indicative of central nervous system cancer comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from IDH1, SOX2, OLIG2, MYC, CREB3L2, SPECC1, EGFR, FGFR2, SETBP1, and ZNF217, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from S100B, CK18, CK8, SOX2, DOG1, CD56, PDPN, NKX2-2, CK19, and S100A14; iii. the predetermined biosignature indicative of cervical adenocarcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from TP53, MECOM, RPN1, U2AF1, GNAS, RAC1, KRAS, FL11, EXT1, and CDK6, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from ER, p16, CYCLIND1, LIN28A, PR, SMARCB1, CEACAM4, S100B, CD15, and PSAP; iv. a predetermined biosignature indicative of cholangiocarcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from TP53, ARID1A, MAF, KRAS, CACNA1D, SPEN, SETBP1, CDK12, LHFPL6, and MDS2, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from HNF1B, villin, antitrypsin, ER, DOG1, SOX2, MUC4, S100A2, KRT5, and CK7; v. a predetermined biosignature indicative of colon adenocarcinoma comprises DNA analysis of at least 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 features selected from APC, CDX2, KRAS, SETBP1, FLT3, LHFPL6, CDKN2A, FLT1, ASXL1, and CDKN2B, and / or expression analysis of at least 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 features selected from CDX2, CK7, MUC2, CK20, MUC1, SATB2, villin, CEACAM5, CDK17, and S100A6; vi. a predetermined biosignature indicative of gastroesophageal adenocarcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from CDX2, ERG, TP53, KRAS, U2AF1, ZNF217, CREB3L2, IRF4, TCF7L2, and LHFPL6, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from CD15, CDX2, MASPIN, MUC5AC, AR, TFF1, NCAM2, TFF3, ISL1, and DOG1; vii. a predetermined biosignature indicative of gastrointestinal stromal tumor (GIST) comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from c-KIT (KIT), TP53, MAX, PDGFRA, TSHR, MSI2, SPEN, JAK1, SETBP1, and CDH11, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from DOG1, CD138, CK19, MUC1, CK8, ACVRL1, KIT, E-cadherin, S100A2, and CK7; viii. the predetermined biosignature indicative of hepatocellular carcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from HLF, CACNA1D, HMGN2P46, KRAS, FANCF, PRCC, ERG, FLT1, FGFR1, and ACSL6, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from antitrypsin, CEACAM16, CK19, AFP, MUC4, CEACAM5, MSH2, BCL6, DSC3, and KRT15; ix. a predetermined biosignature indicative of lung adenocarcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from NKX-2, KRAS, TP53, TPM4, CDX2, TERT, FOXA1, SETBP1, CDKN2A, and LHFPL6, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from napsin A, SOX2, CEACAM7, CK7, S100A10, CEACAM6, S100A1, RCCMa, AR, and VHL; x. the predetermined biosignature indicative of melanoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from IRF4, SOX10, TP53, BRAF, FGFR2, TRIM27, EP300, CDKN2A, LRP1B, and NRAS, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from S100B, CK8, HMB-45, CD19, MUC1, MLANA, S100A14, S100A13, MITF, and S100A1; xi. the predetermined biosignature indicative of meningioma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from CHEK2, TP53, MYCL, THRAP3, MPL, EBF1, EWSR1, PMS2, FLI1, and NTRK2, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from CD138, CK8, DOG1, VIM, S100A14, S100A2, CEACAM1, MSH2, PR, and KRT10; xii. a predetermined biosignature indicative of ovarian granulosa cell tumor comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from FOXL2, TP53, EWSR1, CBFB, SPECC1, BCL3, MYH9, TSHR, GID4, and SOX2, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from FOXL2, CD138, MSH6, MUC1, CK8, PR, MME, antitrypsin, FLI1, and S100B; xiii. a predetermined biosignature indicative of ovarian and fallopian tube adenocarcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from TP53, MECOM, KRAS, TPM4, RAC1, ASXL1, EP300, CDX2, RPN1, and WT1, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from WT1, RCCMa, INHIBIN-alpha, TFE3, S100A13, FOLX2, TLE1, MSLN, POU5F1, and CEACAM3; xiv. a predetermined biosignature indicative of pancreatic adenocarcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from KRAS, CDKN2A, CDKN2B, FANCF, IRF4, TP53, ASXL1, SETBP1, APC, and FOXO1, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from PDX1, GATA3, DOG1, antitrypsin, ISL1, MUC5AC, CD15, SMAD4, CD5, and CALB2; xv. a predetermined biosignature indicative of prostate adenocarcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from FOXA1, PTEN, KLK2, FOXO1, GATA2, FANCA, LHFPL6, KRAS, ETV6, and ERCC3, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from CK7, PSA, NKX3-1, AMACR, S100A5, MUC1, MUC2, UPK3A, KL, and HEPPAR-1; xvi. a predetermined biosignature indicative of renal cell carcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from VHL, TP53, EBF1, MAF, RAF1, CTNNA1, XPC, MUC1, KRAS, and BTG1, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from RCCMa, E-cadherin, p16, S100P, S100A14, HAVCR1, HNF1B, KL, CK7, and MUC1; xvii. the predetermined biosignature indicative of squamous cell carcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from TP53, SOX2, KLHL6, CDKN2A, LPP, CACNA1D, TFRC, KRAS, RPN1, and CDX2, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from P63, SOX2, CK6, KRT17, S100A1, CD3G, SFTPA1, AR, KRT5, and CD138; xviii. the predetermined biosignature indicative of thyroid cancer comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from BRAF, NKX2-1, TP53, MYC, KDSR, TRRAP, CDX2, KRAS, FHIT, and SETBP1, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from thyroglobulin, RCCMa, HEPPAR-1, S100A2, TPSAB1, CALB2, HNF1B, INHIBIN-alpha, ARG1, and CNN1; xix. A predetermined biosignature indicative of urothelial carcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from GATA3, ASXL1, CDKN2B, TP53, CTNNA1, CDKN2A, KRAS, IL7R, CREBBP, and VHL, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from GATA3, UPII, CK20, MUC1, S100A2, HEPPAR-1, P63, CALB2, MITF, and S100P; xx. a predetermined biosignature indicative of endometrial adenocarcinoma comprises DNA analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from PTEN, PAX8, PIK3CA, CCNE1, TP53, MECOM, ESR1, CDX2, CDKN2A, and KRAS, and / or expression analysis of at least one, two, three, four, five, six, seven, eight, nine, or ten features selected from RCCMa, PR, ER, VHL, CALD1, LIN28B, napsinA, KRT5, S100A6, and DES; and / or xxi. A predetermined biosignature indicative of uterine sarcoma comprises DNA analysis of at least 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 features selected from RB1, SPECC1, FANCC, TP53, CACNA1D, JAK1, ETV1, PRRX1, PTCH1, and HOXD13, and / or expression analysis of at least 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 features selected from CK19, CK18, CD56, DES, FOXL2, CD79A, S100A14, ER, MSLN, and MITF. In some embodiments, DNA analysis consists of or comprises determining sequence, mutation, polymorphism, deletion, insertion, substitution, translocation, fusion, truncation, duplication, amplification, repeat, copy number, copy number variation (CNV; copy number alteration; CNA), or any combination thereof. In some embodiments, DNA analysis is performed using polymerase chain reaction (PCR), in situ hybridization, amplification, hybridization, microarray, nucleic acid sequencing, dye termination sequencing, pyrosequencing, next generation sequencing (NGS; high-throughput sequencing), whole exome sequencing, or any combination thereof. In some embodiments, expression analysis consists of or comprises RNA analysis. In some embodiments, RNA analysis consists of or comprises determining sequence, mutation, polymorphism, deletion, insertion, substitution, translocation, fusion, truncation, duplication, amplification, repeat, copy number, amount, level, expression level, presence, or any combination thereof. In some embodiments, RNA analysis is performed using polymerase chain reaction (PCR), in situ hybridization, amplification, hybridization, microarray, nucleic acid sequencing, dye termination sequencing, pyrosequencing, next-generation sequencing (NGS; high-throughput sequencing), whole transcriptome sequencing, or any combination thereof. In some embodiments, expression analysis consists of or includes protein analysis. In some embodiments, protein analysis consists of or includes determining sequence, mutation, polymorphism, deletion, insertion, substitution, fusion, amplification, amount, level, expression level, presence, or any combination thereof. In some embodiments, protein analysis is performed using immunohistochemistry (IHC), flow cytometry, immunoassay, antibody or functional fragment thereof, aptamer, mass spectrometry, or any combination thereof. Any useful combination of such analyses is contemplated by the present invention.
[0027] In the methods provided herein, at least one predetermined biosignature may comprise, or may further comprise, a selection of biomarkers according to any one of Tables 2-116, as the case may be, assessed using DNA analysis. In some embodiments, the DNA analysis consists of or comprises determining sequence, mutation, polymorphism, deletion, insertion, substitution, translocation, fusion, truncation, duplication, amplification, repeat, copy number, copy number variation (CNV; copy number alteration; CNA), or any combination thereof. In some embodiments, the DNA analysis is performed using polymerase chain reaction (PCR), in situ hybridization, amplification, hybridization, microarray, nucleic acid sequencing, dye termination sequencing, pyrosequencing, next-generation sequencing (NGS; high-throughput sequencing), whole exome sequencing, or any combination thereof. In some embodiments, the at least one predetermined biosignature comprising a selection of biomarkers according to any one of Tables 2-116 comprises: i. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 2; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of adrenocortical carcinoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; ii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of anal squamous cell carcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; iii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 4; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, a predetermined biosignature indicative of appendiceal adenocarcinoma origin comprising 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; iv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42 selected from Table 5 , 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of appendiceal mucinous adenocarcinoma of NOS origin that includes 0, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; v. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of bile duct NOS cholangiocarcinoma origin that includes at least 50 features; vi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of brain astrocytoma NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; vii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of a poorly differentiated brain astrocytoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; viii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of breast adenocarcinoma NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; ix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 10 , 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 ... 1, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 , 19 , 20 , 21 , 22 , 23 , 24 , 25 , 26 , 27 , 28 , 29 , 30 , 31 , 32 , 33 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 , 46 , 47 , 48 , 49 , or a predetermined biosignature indicative of breast cancer NOS that includes at least 50 features; x. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 11; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of invasive ductal adenocarcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 a predetermined biosignature indicative of invasive breast lobular adenocarcinoma of NOS origin that includes 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 13; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of a metaplastic breast cancer NOS origin, including at least 50 features; xiii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of cervical adenocarcinoma NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xiv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 15 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of cervical cancer NOS origin, including at least 50 features; xv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 a predetermined biosignature indicative of cervical squamous cell carcinoma of NOS origin comprising at least 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 17; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of colon adenocarcinoma of NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 18; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of colon cancer NOS origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 19; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of colon mucinous adenocarcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of conjunctival melanoma NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xx. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42 selected from Table 21 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32 , 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, a predetermined biosignature indicative of duodenal and ampullary adenocarcinoma NOS origin that includes 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of endometrial endometrioid adenocarcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of endometrial adenocarcinoma NOS origin that includes 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxiii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 24; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of endometrial carcinosarcoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxiv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 25; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of endometrial serous carcinoma origin comprising at least 50 features; xxv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 26; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of endometrial cancer NOS origin, including at least 50 features; xxvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 27; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of undifferentiated endometrial cancer origin, including at least 50 features; xxvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 28; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of endometrial clear cell carcinoma origin comprising at least 50 features; xxviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 29; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of esophageal adenocarcinoma of NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 30; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of an esophageal cancer NOS origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxx. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 31 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of esophageal squamous cell carcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxxi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42 selected from Table 32 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 , 21 , 22 , 23 , 24 , 25 , 26 , 27 , 28 , 29 , 30 , 31 , 32 , 33 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 , 46 , 47 , 48 , 49 or a predetermined biosignature indicative of extrahepatic choledocho-cholangiocarcinoma of NOS origin that includes at least 50 features; xxxii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 33; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of a NOS origin of fallopian tube adenocarcinoma that includes 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxxiii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 34; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of a fallopian tube cancer NOS origin that includes 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxxiv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 35; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of fallopian tube carcinosarcoma NOS origin that includes at least 50 features; xxxv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 36 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of fallopian tube serous carcinoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxxvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, and 41 selected from Table 37 , 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 ... 1, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 , 19 , 20 , 21 , 22 , 23 , 24 , 25 , 26 , 27 , 28 , 29 , 30 , 31 , 32 , 33 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 , 46 , 47 , 48 , 49 or a predetermined biosignature indicative of gastric adenocarcinoma origin, including at least 50 features; xxxvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of gastroesophageal junction adenocarcinoma of NOS origin that includes 0, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxxviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 39; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of glioblastoma origin that includes 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xxxix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 40 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of glioma NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xl. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 41 , 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 ... 1, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 , 19 , 20 , 21 , 22 , 23 , 24 , 25 , 26 , 27 , 28 , 29 , 30 , 31 , 32 , 33 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 , 46 , 47 , 48 , 49 or a predetermined biosignature indicative of gliosarcoma origin that includes at least 50 features; xli. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42 selected from Table 42 , 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 3, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, a predetermined biosignature indicative of head, face, or neck NOS squamous cell carcinoma origin comprising 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xlii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 43 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of intrahepatic bile duct cholangiocarcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xliii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 44; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of kidney cancer NOS origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xliv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 45 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of renal clear cell carcinoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xlv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of renal papillary cell carcinoma of origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xlvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of kidney renal cell carcinoma of NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xlvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of laryngeal NOS squamous cell carcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xlviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 49 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of left colon adenocarcinoma of NOS origin, including at least 50 features; xlix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 50 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of left colon mucinous adenocarcinoma origin, including at least 50 features; l. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of liver hepatocellular carcinoma NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 52 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of lung adenocarcinoma NOS origin that includes 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 53 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of lung adenosquamous carcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; liii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 54 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of lung cancer NOS origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; liv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 55 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of lung mucinous carcinoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of lung neuroendocrine carcinoma of NOS origin that includes 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 57 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of non-small cell lung cancer origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 58 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of a pulmonary sarcomatoid carcinoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 59 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of small cell lung cancer of NOS origin that includes at least 50 features; lix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 60 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of lung squamous cell carcinoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lx. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 61 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20 , 21 , 22 , 23 , 24 , 25 , 26 , 27 , 28 , 29 , 30 , 31 , 32 , 33 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 , 46 , 47 , 48 , 49 or a predetermined biosignature indicative of meningioma NOS origin, including at least 50 features; lxi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of nasopharyngeal NOS squamous cell carcinoma origin that includes 0, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 63 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20 , 21 , 22 , 23 , 24 , 25 , 26 , 27 , 28 , 29 , 30 , 31 , 32 , 33 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 , 46 , 47 , 48 , 49 or a predetermined biosignature indicative of oligodendroglioma NOS origin that includes at least 50 features; lxiii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of an aplastic oligodendroglioma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxiv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 65 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of ovarian adenocarcinoma of NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 66 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of ovarian cancer NOS origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 67 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of ovarian carcinosarcoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of ovarian clear cell carcinoma of NOS origin that includes 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 69 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of ovarian endometrioid adenocarcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of ovarian granulosa cell tumor NOS origin that includes 0, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxx. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of ovarian high-grade serous carcinoma of origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of ovarian low-grade serous carcinoma of origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 73 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of ovarian mucinous adenocarcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxiii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 74 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of ovarian serous carcinoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxiv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 75 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of pancreatic adenocarcinoma of NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from table 76 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of pancreatic cancer NOS origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 77 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of pancreatic mucinous adenocarcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of pancreatic neuroendocrine carcinoma of NOS origin that includes 0, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 79 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of a parotid gland carcinoma NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 80 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of peritoneal adenocarcinoma of NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxx. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 81 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of peritoneal cancer NOS origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxxi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 82 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of peritoneal serous carcinoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxxii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 83 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of pleural mesothelioma NOS origin that includes at least 50 features; lxxxiii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 84; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of prostate adenocarcinoma of NOS origin, including at least 50 features; lxxxiv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 a predetermined biosignature indicative of a NOS origin of rectosigmoid colon adenocarcinoma comprising 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxxv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 86 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of rectal adenocarcinoma of NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxxvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 87 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of rectal mucinous adenocarcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxxvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of retroperitoneal dedifferentiated liposarcoma origin that includes 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxxviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of retroperitoneal leiomyosarcoma NOS origin that includes 0, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; lxxxix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 90 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of right colon adenocarcinoma of NOS origin, including at least 50 features; xc. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 91 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of right colon mucinous adenocarcinoma origin, including at least 50 features; xci. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 92 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of salivary gland adenoid cystic carcinoma origin that includes at least 50 features; xcii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of cutaneous Merkel cell carcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xciii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 94 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of cutaneous nodular melanoma origin comprising at least 50 features; xciv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 95 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of cutaneous squamous cell carcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xcv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 96 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of cutaneous melanoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xcvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42 selected from Table 97 ,43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 a predetermined biosignature indicative of a small intestinal gastrointestinal stromal tumor (GIST) NOS origin comprising 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xcvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 98 , 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 ... 1, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, a predetermined biosignature indicative of small intestinal adenocarcinoma origin comprising 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xcviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42 selected from Table 99 ,43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 a predetermined biosignature indicative of gastric gastrointestinal stromal tumor (GIST) NOS origin comprising 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; xcix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 100 , 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of gastric signet ring cell adenocarcinoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; c. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 101 , 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of thyroid cancer NOS origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; ci. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 102 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of poorly differentiated thyroid cancer of NOS origin that includes 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; cii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 103; 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of thyroid papillary carcinoma origin comprising at least 50 features; ciii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 2, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 2, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 a predetermined biosignature indicative of tonsillar oropharyngeal tongue squamous cell carcinoma of origin comprising at least 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; civ. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 105 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of transverse colon adenocarcinoma NOS origin that includes at least 50 features; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from cv. Table 106 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of urothelial bladder adenocarcinoma of NOS origin that includes 0, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; cvi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 107 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of urothelial bladder cancer NOS origin that includes 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; cvii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 108 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of urothelial bladder squamous cell carcinoma origin that includes 0, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; cviii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 109 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or a predetermined biosignature indicative of urothelial carcinoma NOS origin, including at least 50 features; cix. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 110 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of endometrial stromal sarcoma NOS origin that includes 0, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; cx. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from Table 111 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, a predetermined biosignature indicative of uterine leiomyosarcoma NOS origin that includes 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; cxi. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 112 , 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of uterine sarcoma NOS origin that includes 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; cxii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 113 , 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 a predetermined biosignature indicative of uveal melanoma origin comprising 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; cxiii. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 selected from Table 114 , 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features a predetermined biosignature indicative of vaginal squamous cell carcinoma origin comprising 9, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; cxiv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42 selected from Table 115 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32 , 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32 ... a predetermined biosignature indicative of vulvar squamous cell carcinoma of origin comprising 1, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features; and / or cxv. 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, selected from table 116 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, or at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 , 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 features, a predetermined biosignature indicative of cutaneous trunk melanoma origin. In some embodiments, the selection of biomarkers according to any one of Tables 2-116 is performed by selecting biomarkers that are in the top 1%, 2%, 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 11%, 12%, 13%, 14%, 15%, 16%, 17%, 18%, 19%, 20%, 21%, 22%, 23%, 24%, 25%, 26%, 27%, 28%, 29%, 30%, 31%, 32%, 33%, 34%, 35%, 36%, 37%, 38%, 39%, 40%, 41%, 42%, 43%, 44%, 45%, 46%, 47%, 48%, 49%, 50%, 51%, 52%, 53%, 54%, 55%, 56%, 57%, 58%, 59%, 60%, 61%, 62%, 63%, 64%, 65%, 66%, 67%, 68%, 69%, 70%, 71%, 72%, 73%, 74%, 75%, 76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 100%, 101%, 102%, 103%, 104%, 105%, 106%, 107%, 108%, 109%, 110%, 111%, 112%, 113%, 114%, 115%, 116%, 117 Includes 4%, 25%, 26%, 27%, 28%, 29%, 30%, 31%, 32%, 33%, 34%, 35%, 36%, 37%, 38%, 39%, 40%, 41%, 42%, 43%, 44%, 45%, 46%, 47%, 48%, 49%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 100%. In some embodiments, the selection of biomarkers according to any one of Tables 2-116 includes the top 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or 50 signature biomarkers having the highest importance values in the corresponding table.In some embodiments, the selection of biomarkers according to any one of Tables 2-116 is based on the top 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or 50 biomarkers having the highest importance values in the corresponding table. Include at least 1%, 2%, 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 11%, 12%, 13%, 14%, 15%, 16%, 17%, 18%, 19%, 20%, 21%, 22%, 23%, 24%, 25%, 26%, 27%, 28%, 29%, 30%, 31%, 32%, 33%, 34%, 35%, 36%, 37%, 38%, 39%, 40%, 41%, 42%, 43%, 44%, 45%, 46%, 47%, 48%, 40%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 100% of the signature biomarkers. In some embodiments, the selection of biomarkers according to any one of Tables 2-116 includes at least 50%, 60%, 70%, 75%, 80%, 85%, 90%, 95%, or 100% of the top 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 65, 70, 75, 80, 85, 90, 95, or 100 signature biomarkers having the highest importance values in the corresponding table.
[0028] When selecting biomarkers from among the predetermined biosignatures provided herein, biomarkers that provide the most useful predictions can be selected. For example, the top 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or 50 features, such as 3, 5, 10, 20, or 25 features, or at least 3, 5, 10, 20, or 25 features, having the highest importance values for each predetermined biosignature listed in Tables 2-116 can be selected.
[0029] In some embodiments of the methods provided herein, step (b) comprises determining the gene copy number for at least one member of the biosignature, and step (d) comprises processing the gene copy number. In some embodiments, step (b) comprises determining a sequence for at least one member of the biosignature, and step (d) comprises processing the sequence. In some embodiments, step (b) comprises determining a sequence for multiple members of the biosignature, and step (d) comprises comparing the sequence to a reference sequence (e.g., wild-type) to identify microsatellite repeats and to identify members of the biosignature with microsatellite instability (MSI). In some embodiments, step (b) comprises determining a sequence for multiple members of the biosignature, and step (d) comprises comparing the sequence to a reference sequence (e.g., wild-type) to identify tumor mutation burden (TMB). In some embodiments, step (b) comprises determining the mRNA transcription levels of at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or at least 50 genes in any one of Tables 117-120 and / or INSM1, and step (d) comprises processing the transcription levels. In some embodiments, the gene copy number, CNV, or CNA of a gene in a biosignature is determined by measuring the copy number of at least one contiguous region of the gene, optionally wherein the contiguous region includes at least one position in the same subband, band, or arm of the chromosome in which the gene is located.
[0030] In some embodiments of the methods provided herein, one or more biomarkers in a biosignature are evaluated as described in Tables 2-116 or their corresponding tables, including but not limited to Tables 117-120.
[0031] In some embodiments of the methods provided herein, the model comprises a plurality of intermediate models, and the plurality of intermediate models comprises at least one pairwise comparison module and / or at least one multi-class classification model. In some embodiments, the model calculates a statistical measure of the biosignature's correspondence to at least one of the at least one predetermined biosignature. In some embodiments, the processing in step (d) comprises a pairwise comparison between candidate predetermined biosignatures, and a probability that the biosignature corresponds to one of the pair of at least one predetermined biosignature is calculated; and / or comprises evaluating the biosignature using at least one multi-class classification model. In some embodiments, the pairwise comparison between two candidate primary tumor origins and / or the multi-class classification model are determined using a machine learning classification algorithm, and optionally, the machine learning classification algorithm comprises a boosted tree. In some embodiments, a pairwise comparison between two candidates for primary tumor origin is applied to at least one pre-defined biosignature provided herein, e.g., with respect to Tables 2-116; and / or a multi-class classification model is applied to at least one pre-defined biosignature provided herein, e.g., with respect to Tables 118-120.
[0032] In some embodiments, the methods provided herein further comprise determining an intermediate model prediction, wherein the intermediate model prediction is a cancer type determined by a joint pairwise comparison between at least one pair of pre-defined biosignatures provided herein, e.g., with respect to Tables 2-116; a cancer / disease type determined by an intermediate multi-class model applied to at least one pre-defined biosignature provided herein, e.g., with respect to Table 118; and optionally, a cancer / disease type determined by an intermediate multi-class model applied to at least one pre-defined biosignature provided herein, e.g., with respect to Table 119. The cancer / disease type where the class model is applied to at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, or 28 of the predetermined biosignatures in Table 118; e.g., with respect to Table 119, the cancer / disease type is determined by an intermediate multi-class model applied to at least one predetermined biosignature provided herein. and / or at least one predetermined organ group type provided herein, e.g., with respect to Table 120, where the intermediate multi-class model is applied to at least one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, nineteen, twenty, twenty-one, twenty-two, twenty-three, twenty-four, twenty-five, twenty-six, or twenty-seven of the predetermined biosignatures in Table 119; histology determined by an intermediate multiclass model applied to a biosignature of at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, or 29 of the predetermined biosignatures in Table 120.In some embodiments, the processing in step (d) includes inputting the output of each of the utilized intermediate multi-class models into a final predictive model that provides a prediction in step (e), optionally the final predictive model includes a machine learning algorithm, optionally the machine learning algorithm includes a boosted tree.
[0033] As described herein, the at least one predicted attribute of cancer provided by the system and method herein can be provided at a desired level of granularity. In some embodiments, the at least one predicted attribute of cancer is adrenocortical carcinoma; anal squamous cell carcinoma; appendix adenocarcinoma, NOS; appendix mucinous adenocarcinoma; bile duct, NOS, cholangiocarcinoma; brain anaplastic astrocytoma; brain astrocytoma, NOS; breast adenocarcinoma, NOS; breast cancer, NOS; invasive ductal adenocarcinoma; breast invasive lobular carcinoma, NOS; breast metaplastic carcinoma, NOS; cervical adenocarcinoma, NOS; cervical cancer, NOS; cervical squamous cell carcinoma; colon adenocarcinoma, NOS; colon cancer, NOS; colon mucinous adenocarcinoma; conjunctival malignant melanoma, NOS; duodenal ampulla adenocarcinoma, NOS; endometrial adenocarcinoma, NOS ;Endometrial carcinosarcoma;Endometrial endometrioid adenocarcinoma;Endometrial serous carcinoma;Endometrial carcinoma, NOS;Undifferentiated endometrial carcinoma;Endometrial clear cell carcinoma;Esophageal adenocarcinoma, NOS;Esophageal carcinoma, NOS;Esophageal squamous cell carcinoma;Extrahepatic bile duct, common bile duct, gallbladder adenocarcinoma, NOS;Fallen tube adenocarcinoma, NOS;Fallen tube carcinosarcoma, NOS;Fallen tube serous carcinoma;Gastric adenocarcinoma;Esophagogastric junction adenocarcinoma, NOS;Glioblastoma;Glioma, NOS;Gliosarcoma;Squamous cell carcinoma of the head, face or neck, NOS;Choleductal carcinoma of the intrahepatic bile duct;Renal carcinoma, NOS;Renal clear cell carcinoma;Papillary renal cell carcinoma of the kidney;Renal cell carcinoma of the kidney, NOS; larynx, NOS squamous cell carcinoma; left colon adenocarcinoma; NOS; left colon mucinous adenocarcinoma; hepatocellular carcinoma of the liver; NOS; lung adenocarcinoma; NOS; lung gland squamous cell carcinoma; lung cancer; Epithelial carcinoma; meningioma of the meninges, NOS; nasopharyngeal, NOS squamous cell carcinoma; anaplastic oligodendroglioma; oligodendroglioma, NOS; ovarian adenocarcinoma; Low-grade serous carcinoma; ovarian mucinous adenocarcinoma; ovarian serous carcinoma; pancreatic adenocarcinoma, NOS; adenocarcinoma, NOS; rectal adenocarcinoma, NOS; rectal mucinous adenocarcinoma; retroperitoneal dedifferentiated liposarcoma; retroperitoneal leiomyosarcoma, NOS; right colon adenocarcinoma, NOS; right colon mucinous adenocarcinoma; salivary gland adenoid cystic carcinoma; cutaneous melanoma; cutaneous melanoma; cutaneous Merkel cell carcinoma; cutaneous nodular melanoma; cutaneous squamous cell carcinoma;The tumor comprises at least one of: cutaneous trunk melanoma; small intestine adenocarcinoma; small intestine gastrointestinal stromal tumor, NOS; gastric gastrointestinal stromal tumor, NOS; gastric signet ring cell adenocarcinoma; anaplastic thyroid carcinoma, NOS; thyroid carcinoma, NOS; papillary thyroid carcinoma of the thyroid; tonsil, oropharynx, and tongue squamous cell carcinoma; transverse colon adenocarcinoma, NOS; urothelial bladder adenocarcinoma, NOS; urothelial bladder carcinoma, NOS; urothelial bladder squamous cell carcinoma; urothelial carcinoma, NOS; endometrial stromal sarcoma of the uterus, NOS; uterine leiomyosarcoma, NOS; uterine sarcoma, NOS; uveal melanoma; vaginal squamous cell carcinoma; vulvar squamous cell carcinoma; and any combination thereof. In some embodiments, at least one attribute of the predicted cancer comprises at least one of breast adenocarcinoma, central nervous system cancer, cervical adenocarcinoma, bile duct carcinoma, colon adenocarcinoma, gastroesophageal adenocarcinoma, gastrointestinal stromal tumor (GIST), hepatocellular carcinoma, lung adenocarcinoma, melanoma, meningioma, ovarian granulosa cell tumor, ovarian and fallopian tube adenocarcinoma, pancreatic adenocarcinoma, prostate adenocarcinoma, renal cell carcinoma, squamous cell carcinoma, thyroid cancer, urothelial carcinoma, endometrial adenocarcinoma, and uterine sarcoma. In some embodiments, at least one attribute of the predicted cancer comprises at least one of bladder; skin; lung; head, face, or neck (NOS); esophagus; female reproductive tract (FGT); brain; colon; prostate; liver, gallbladder, duct; breast; eye; stomach; kidney; and pancreas. In some embodiments, the sample comprises a cancer of unknown primary (CUP).
[0034] In one aspect, there is provided a method for predicting at least one attribute of cancer, comprising: (a) obtaining a biological sample from a subject having cancer, wherein the biological sample can be a biological sample as described above; (b) performing at least one assay to evaluate one or more biomarkers in the biological sample to obtain a biosignature for the sample, wherein the at least one assay can be as described above; (c) providing the biosignature to a model trained to predict at least one attribute of cancer, the model including at least one intermediate model, the at least one intermediate model comprising: (1) a first intermediate model trained to process DNA data using the predetermined biosignatures provided herein with respect to Tables 2-116; (2) a second intermediate model trained to process RNA data using the predetermined biosignatures provided herein with reference to Table 118; (3) a third intermediate model trained to process RNA data using the predetermined biosignatures provided herein with reference to Table 119; and / or (4) A fourth intermediate model trained to process RNA data using the predetermined biosignatures provided herein with respect to Table 120. a process comprising: (d) processing, by one or more computers, the provided biosignature through each of the plurality of intermediate models in part (c), providing the output of each of the plurality of intermediate models to a final predictive model, and processing, by one or more computers, the output of each of the plurality of intermediate models through the final predictive model; and (e) outputting a prediction of at least one attribute of cancer from the final prediction model. Provided herein are methods comprising: (a) determining whether or not a gene is present in a biological sample; and (b) determining whether or not a gene is present in a biological sample. In some embodiments, at least one attribute of the predicted cancer is a tissue of origin selected from the group consisting of breast adenocarcinoma, central nervous system cancer, cervical adenocarcinoma, bile duct carcinoma, colon adenocarcinoma, gastroesophageal adenocarcinoma, gastrointestinal stromal tumor (GIST), hepatocellular carcinoma, lung adenocarcinoma, melanoma, meningioma, ovarian granulosa cell tumor, ovarian and fallopian tube adenocarcinoma, pancreatic adenocarcinoma, prostate adenocarcinoma, renal cell carcinoma, squamous cell carcinoma, thyroid cancer, urothelial carcinoma, endometrial adenocarcinoma, uterine sarcoma, and any combination thereof. In some embodiments, step (b) comprises performing DNA analysis by sequencing genomic DNA from the biological sample, wherein the DNA analysis is performed for the genes in Tables 2-116. In some embodiments, step (b) comprises performing RNA analysis by sequencing messenger RNA transcripts from the biological sample, wherein the RNA analysis is performed for the genes in Tables 117 or 118-120. In some embodiments, at least one of the at least one intermediate model and the final predictive model includes a machine learning module, and optionally, the machine learning module includes one or more of a random forest, a support vector machine, a logistic regression, a K-nearest neighbor, an artificial neural network, a naive Bayes, a quadratic discriminant analysis, and a Gaussian process model, and optionally, the machine learning module includes an XGBoost decision tree-based ensemble machine learning algorithm.
[0035] The prediction of at least one attribute of cancer made using the systems and methods provided herein can be used in a variety of situations. See, for example, Example 3 herein. In some embodiments, the prediction is used to confirm a diagnosis. In some embodiments, the prediction is used to modify a diagnosis. In some embodiments, the prediction is used to perform a quality check. In some embodiments, the prediction is used to indicate additional molecular tests to be performed.
[0036] In some embodiments of the methods of the present invention, the at least one attribute to be predicted comprises an ordered list, and optionally, the list is ordered using a statistical measure. For example, the list may be ordered by confidence in the prediction. In some embodiments, the methods provided herein further comprise determining whether the prediction of the at least one attribute meets a threshold level, and optionally, the threshold level is related to the probability of the prediction and / or the confidence in the prediction.
[0037] In some embodiments, the methods provided herein further comprise generating a molecular profile that identifies the presence, level, or status of the biomarkers in the biosignature, e.g., whether each biomarker has copy number alterations and / or mutations; and / or TMB level, MSI, LOH, or MMR status; and / or expression levels, including at least one transcript and / or protein level. See, e.g., Example 1 for further details.
[0038] In some aspects, the methods provided herein further include selecting at least one treatment for the patient based at least in part on at least one attribute of the classified cancer, optionally wherein the treatment includes administering immunotherapy, chemotherapy, or a combination thereof.
[0039] In certain aspects, provided herein are methods that include generating a report, the report including a summary or overview of the molecular profile generated herein, e.g., as described above, the report identifying at least one attribute of the classified cancer, and optionally, the report further identifying at least one treatment selected according to a method provided herein, e.g., as described above. In some embodiments, the report is computer-generated, a printed report and / or a computer file, and / or accessible via a web portal.
[0040] Further provided herein is a system including one or more computers and one or more storage media storing instructions that, when executed by the one or more computers, cause the one or more computers to perform the operations described with reference to the above-described methods. Relatedly, also provided herein is a non-transitory computer-readable medium storing software including instructions executable by one or more computers that, when so executed, cause the one or more computers to perform the operations with reference to the above-described methods.
[0041] In one aspect, a system for identifying a cancer lineage is provided herein, the system comprising: (a) at least one host server; (b) at least one user interface for accessing the at least one host server to access and input data; (c) at least one processor for processing the input data; (d) at least one memory coupled to the processor for storing the processed data and instructions for performing operations with reference to the above-described method; and (e) at least one display for displaying the primary origin of the classified cancer. In some embodiments, the system further comprises at least one memory coupled to the processor for storing the processed data and instructions for selecting a treatment and / or generating a molecular profiling report as described above. In some embodiments, the at least one display comprises a report including at least one attribute of the classified cancer.
[0042] In one aspect, provided herein is a system for identifying at least one attribute of a sample obtained from a body, the at least one attribute being selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histological examination findings, and any combination thereof, the system including one or more processors and one or more memory units storing instructions that, when executed by the one or more processors, cause the one or more processors to perform operations, the operations including: obtaining, by the system, a sample biological signature representing the sample obtained from the body, the sample comprising cancer cells; providing, by the system, the sample biological signature as input to a model, the model being configured to perform an analysis between the sample biological signature and each of a plurality of different biological signatures, each of the plurality of different biological signatures corresponding to a different attribute and / or the model being a multi-class model, wherein the classes include different attributes; and receiving, by the system, output generated by the model representing data indicative of likely attributes of the sample obtained from the body based on pairwise analysis.In another aspect, provided herein is a system for identifying at least one attribute of a sample obtained from a body, the at least one attribute being selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histological examination findings, and any combination thereof, the system including one or more processors and one or more memory units storing instructions that, when executed by the one or more processors, cause the one or more processors to perform operations, the operations including: obtaining, by the system, a sample biological signature representing the sample obtained from the body; providing, by the system, the sample biological signature as input to a model, the model being configured to perform an analysis between the sample biological signature and each of a plurality of different biological signatures, each of the plurality of different biological signatures corresponding to a different attribute and / or the model being a multi-class model, the classes including different attributes; and receiving, by the system, output generated by the model, the output representing data indicative of the probability that an attribute identified by a particular biological signature identifies a likely attribute of the sample.In yet another aspect, a system for identifying at least one attribute of a sample obtained from a body, wherein the at least one attribute is selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histology findings, and any combination thereof, the system including one or more processors and one or more memory units storing instructions that, when executed by the one or more processors, cause the one or more processors to perform operations, the operations including obtaining, by the system, a sample biological signature representative of the biological sample obtained from the cancer sample in a first portion of the body, the sample biological signature comprising a plurality of characteristics of the biological sample. Provided herein is a system that includes: obtaining a sample biological signature as input to a model, the plurality of features including data describing a first part of a body; providing, by the system, a sample biological signature as input to a model, the model being configured to perform an analysis between the sample biological signature and each of a plurality of different biological signatures, each of the plurality of different biological signatures corresponding to a different attribute and / or the model being a multi-class model including different classes of attributes; and receiving, by the system, an output generated by the model representing data indicative of a likely attribute of a sample obtained from the body. In some embodiments, the sample obtained from the body is a biological sample as described above. In some embodiments, the at least one attribute is primary tumor origin, cancer / disease type, organ group, or histological examination findings as described above. In some embodiments, the sample biological signature includes data representing features obtained based on performance of an assay for evaluating one or more biomarkers in the cancer sample, optionally the assay is in accordance with at least one of the assays described above. In some embodiments, the computing further includes determining a suggested cancer treatment based on the output generated by the model. In some embodiments, each of the plurality of different biological signatures comprises a pre-identified biosignature, eg, as described above with respect to Tables 2-116 or Tables 118-120.In some embodiments, the operations further include receiving, by the system, an output generated by the model representing a likelihood that a sample obtained from the body at the first portion of the body originated from a cancer in the second portion of the body. In some embodiments, the operations further include determining, by the system and based on the received output, whether the received output generated by the model satisfies one or more predetermined thresholds; and determining, by the system based on a determination by the system that the received output satisfies the one or more predetermined thresholds, that the cancerous neoplasm in the first portion of the body originated from a cancer in the second portion of the body, or that the cancerous neoplasm in the first portion of the body did not originate from a cancer in the second portion of the body. In some embodiments, the received output generated by the model includes a matrix data structure, the matrix data structure including a cell for each feature of the plurality of features evaluated by the pairwise model, each cell including data describing the probability that the corresponding feature indicates that the cancerous neoplasm in the first portion of the body was caused by a cancer in the second portion of the first body.
[0043] In one aspect, a system for identifying at least one attribute of cancer, wherein the at least one attribute is selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histology, and any combination thereof, the system including one or more processors and one or more memory units storing instructions that, when executed by the one or more processors, cause the one or more processors to perform operations, the operations comprising receiving a sample biological signature representing a biological sample obtained from a cancerous neoplasm in a first portion of a body by the system storing a model configured to perform an analysis of the biological signature, the model comprising a plurality of different types of biological signatures. Provided herein is a system that includes: receiving cancerous biological signatures for each cancerous biological sample, the cancerous biological signatures including at least a first cancerous biological signature representing a molecular profile of cancerous biological samples from one or more other first body parts; performing, by the system and using a model, an analysis of the sample biological signatures using the cancerous biological signatures; generating, by the system and based on the performed analysis, a likelihood that the cancerous neoplasm in the first body part is caused by a cancer in a second body part; and providing, by the system, the generated likelihood to another device for display on the device.
[0044] In one aspect, provided herein is a system for training an analytical model to identify at least one attribute of a cancer sample obtained from a body, wherein the at least one attribute is selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histological examination findings, and any combination thereof, the system including one or more processors and one or more memory units storing instructions that, when executed by the one or more processors, cause the one or more processors to perform operations, the operations including: generating, by the system, an analytical model, wherein generating the analytical model includes generating a plurality of model signatures, each model signature configured to distinguish between at least one attribute of each of the at least one attribute; acquiring, by the system, a set of training data items, each training data item representing DNA or RNA sequencing results and including data indicating (i) whether a variant was detected in the sequencing results and (ii) the copy number of a gene or transcript in the sequencing results; and training, by the system, the analytical model using the acquired set of training data items. In some embodiments, the plurality of model signatures are generated using a random forest model, optionally wherein the random forest model comprises a gradient boosted forest.
[0045] Unless otherwise specified, all scientific and technical terms used herein have the same meaning as commonly understood by those skilled in the art to which this invention belongs. Methods and materials for use in the present invention are described herein; however, other suitable methods and materials known in the art can also be used. Materials, methods, and examples are illustrative only and are not intended to be limiting. All publications, patent applications, patents, sequences, database entries, and other references mentioned herein are incorporated herein by reference in their entirety. In case of conflict, the present specification, including definitions, will control.
[0046] [The present invention 1001] 1. A data processing apparatus for generating an input data structure for use in training a machine learning model to predict at least one attribute of a biological sample, wherein the at least one attribute is selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histology findings, and any combination thereof, the data processing apparatus comprising: one or more processors; and one or more storage devices storing instructions that, when executed by the one or more processors, cause the one or more processors to perform operations, the operations comprising: obtaining, with said data processing device, one or more biomarker data structures and one or more sample data structures; extracting, with the data processing device, first data representing one or more biomarkers associated with the sample from the one or more biomarker data structures, second data representing sample data from the one or more sample data structures, and third data representing at least one attribute to be predicted; generating, by the data processing device, a data structure for input into a machine learning model based on first data representing the one or more biomarkers and second data representing the at least one attribute and sample to be predicted; providing, by the data processing device, the generated data structure as an input to the machine learning model; obtaining, by the data processing device, an output generated by the machine learning model based on processing the generated data structure by the machine learning model; determining, by the data processing device, a difference between third data representing at least one predicted attribute of the sample and an output generated by the machine learning model; and adjusting, by the data processing device, one or more parameters of the machine learning model based on a difference between third data representative of at least one predicted attribute of the sample and an output generated by the machine learning model. The data processing device comprising: [The present invention 1002] 1001. A data processing device of the present invention, wherein the set of one or more biomarkers comprises one or more biomarkers listed in any one of Tables 121-129, Tables 117-120, INSM1, any table selected from Tables 2-116, and any combination thereof, and optionally the set of one or more biomarkers comprises one or more biomarkers listed in any one of Table 117, Table 118, Table 119, Table 120, INSM1, or any combination thereof. [The present invention 1003] A data processing device of the present invention 1001, wherein the set of one or more biomarkers includes each of the biomarkers of the present invention 1002. [The present invention 1004] A data processing device of the present invention 1001, wherein the set of one or more biomarkers comprises at least one of the biomarkers in the present invention 1002, and optionally the set of one or more biomarkers comprises each of the biomarkers in Table 118, Table 119, Table 120, and INSM1, and optionally the set of one or more biomarkers further comprises a marker in any table selected from Tables 2 to 116. [The present invention 1005] 1. A data processing apparatus for generating an input data structure for use in training a machine learning model to predict at least one attribute of a biological sample, wherein the at least one attribute is selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histology findings, and any combination thereof, the data processing apparatus comprising: one or more processors; and one or more storage devices storing instructions that, when executed by the one or more processors, cause the one or more processors to perform operations, the operations comprising: obtaining, by the data processing device, a first data structure structuring data representing a set of one or more biomarkers associated with biological samples from a first distributed data source, the first data structure including key values that identify the samples; storing, by the data processing apparatus, the first data structure in one or more memory devices; obtaining, by the data processing device, a second data structure structuring data representing data for at least one attribute of samples having one or more biomarkers from a second distributed data source, wherein the data for the at least one attribute includes data identifying the sample, the at least one attribute, and an indicator of the at least one attribute to be predicted, and the second data structure also includes a key value identifying the sample; storing, by the data processing apparatus, the second data structure in the one or more memory devices; generating, by the data processing apparatus and using the first data structure and the second data structure stored in the memory device, a labeled training data structure comprising (i) data representing the set of one or more biomarkers and samples, and (ii) labels providing an indication of at least one attribute to be predicted, the step comprising correlating, by the data processing apparatus, the first data structure structuring data representing the set of one or more biomarkers associated with samples with the second data structure representing at least one attribute data to be predicted for samples having the one or more biomarkers based on subject-identifying key values; and training a machine learning model using the generated label training data structure by the data processing device, the step comprising providing, by the data processing device and to the machine learning model, the generated label training data structure as an input to the machine learning model. The data processing device comprising: [The present invention 1006] The calculation is obtaining, by the data processing device and from the machine learning model, an output generated by the machine learning model based on processing by the machine learning model of the generated labeled training data structure; and determining, by the data processing device, a difference between the output generated by the machine learning model and a label providing an indication of at least one predicted attribute. The data processing device of the present invention 1005 further includes: [The present invention 1007] The calculation is adjusting, by the data processing device, one or more parameters of the machine learning model based on the determined difference between the output produced by the machine learning model and the label providing an indication of the at least one attribute to be predicted. The data processing device of the present invention 1006 further includes: [The present invention 1008] 1005. A data processing device of the present invention, wherein the set of one or more biomarkers comprises one or more biomarkers listed in any one of Tables 121-127, Tables 117-120, INSM1, any table selected from Tables 2-116, and any combination thereof, and optionally the set of one or more biomarkers comprises one or more biomarkers listed in any one of Table 117, Table 118, Table 119, Table 120, INSM1, or any combination thereof. [The present invention 1009] A data processing device of the present invention 1005, wherein the set of one or more biomarkers includes each of the biomarkers in Table 118, Table 119, Table 120, and INSM1, and optionally, the set of one or more biomarkers further includes markers in any table selected from Tables 2-116. [The present invention 1010] The data processing device of the present invention 1005, wherein the set of one or more biomarkers comprises at least one of the biomarkers of the present invention 1008. [The present invention 1011] A method including steps corresponding to each of the operations 1001 to 1010 of the present invention. [The present invention 1012] A system including one or more computers and one or more storage media storing instructions that, when executed by the one or more computers, cause the one or more computers to perform each of the operations described with reference to any of the present inventions 1001 to 1010. [The present invention 1013] A non-transitory computer-readable medium storing software including instructions executable by one or more computers that, when executed, cause the one or more computers to perform the operations described with reference to any of the present inventions 1001-1010. [The present invention 1014] 1. A method for determining at least one attribute of a biological sample, wherein the at least one attribute is selected from the group consisting of primary tumor origin, cancer / disease type, organ group, histological examination findings, and any combination thereof, the method comprising: For each particular machine learning model of a plurality of machine learning models, each trained to perform a predictive operation between received input data representing a sample and the at least one attribute, providing input data representing a sample of a subject to the particular machine learning model, the sample being obtained from a tissue or organ of the subject; and obtaining output data generated by the particular machine learning model based on processing of provided input data by the particular machine learning model, the output data representing the probability or likelihood that a sample represented by the provided input data corresponds to the at least one attribute; providing output data obtained for each of the plurality of machine learning models to a voting unit, the provided output data including data representative of initial sample attributes determined by each of the plurality of machine learning models; and determining, by the voting unit and based on the provided output data, at least one predicted attribute; The method comprising: [The present invention 1015] The method of the present invention 1014, wherein the at least one attribute to be predicted is determined by applying a majority rule to the provided output data, by using the provided output data as input to a dynamic voting model, or by a combination thereof. [The present invention 1016] determining, by the voting unit and based on the provided output data, at least one predicted attribute; determining, by the voting unit, the number of occurrences of each initial attribute class of a plurality of candidate attribute classes; and selecting an initial attribute class from the plurality of candidate attribute classes that has the highest number of occurrences by the voting unit; The method of the present invention 1014 or 1015, comprising: [The present invention 1017] Any of the methods of claims 1014 to 1016, wherein each machine learning model of the plurality of machine learning models comprises a random forest classification algorithm, a support vector machine, a logistic regression, a k-nearest neighbor model, an artificial neural network, a naive Bayes model, a quadratic discriminant analysis, a Gaussian process model, or any combination thereof. [The present invention 1018] The method of any of claims 1014 to 1016, wherein each machine learning model of the plurality of machine learning models comprises a random forest classification algorithm. [The present invention 1019] The method of any of claims 1014 to 1018, wherein the plurality of machine learning models comprises multiple representations of the same type of classification algorithm. [The present invention 1020] 1018. The method of any of claims 1014 to 1018, wherein the input data represents (i) sample attributes and (ii) a description of origin. [The present invention 1021] The method of the present invention 1020, wherein the plurality of candidate attribute classes includes at least one class for prostate, bladder, endocervix, peritoneum, stomach, esophagus, ovary, parietal lobe, cervix, endometrium, liver, sigmoid colon, superior lateral quadrant of breast, uterus, pancreas, head of pancreas, rectum, colon, breast, intrahepatic bile duct, cecum, gastroesophageal junction, frontal lobe, kidney, tail of pancreas, ascending colon, descending colon, gallbladder, appendix, rectosigmoid colon, fallopian tube, brain, lung, temporal lobe, lower third of esophagus, superior medial quadrant of breast, transverse colon, and skin. [The present invention 1022] The method of the present invention 1020, wherein the plurality of candidate attribute classes comprises at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or all 21 of breast adenocarcinoma, central nervous system cancer, cervical adenocarcinoma, bile duct carcinoma, colon adenocarcinoma, gastroesophageal adenocarcinoma, gastrointestinal stromal tumor (GIST), hepatocellular carcinoma, lung adenocarcinoma, melanoma, meningioma, ovarian granulosa cell tumor, ovarian and fallopian tube adenocarcinoma, pancreatic adenocarcinoma, prostate adenocarcinoma, renal cell carcinoma, squamous cell carcinoma, thyroid cancer, urothelial carcinoma, endometrial adenocarcinoma, and uterine sarcoma. [The present invention 1023] Any of the methods of inventions 1020-1022, wherein the sample attributes include one or more biomarkers for the sample, and optionally the one or more biomarkers include one or more biomarkers listed in any one of Tables 121-127, Tables 117-120, INSM1, any table selected from Tables 2-116, and any combination thereof, and optionally the set of one or more biomarkers includes one or more biomarkers listed in any one of Table 117, Table 118, Table 119, Table 120, INSM1, or any combination thereof. [The present invention 1024] The method of the present invention 1023, wherein the one or more biomarkers include each of the biomarkers in Table 118, Table 119, Table 120, and INSM1, and optionally, the set of one or more biomarkers further includes a marker in any table selected from Tables 2-116. [The present invention 1025] The method of claim 1023, wherein the one or more biomarkers comprises a panel of genes that is less than all known genes in the sample. [The present invention 1026] The method of claim 1023, wherein the one or more biomarkers comprises a panel of genes including all known genes for the sample. [The present invention 1027] The method of any of claims 1020 to 1026, wherein the input data further comprises data representing a description of the sample and / or subject. [The present invention 1028] A system including one or more computers and one or more storage media storing instructions that, when executed by the one or more computers, cause the one or more computers to perform each of the operations described with reference to any of the present inventions 1014-1027. [The present invention 1029] A non-transitory computer-readable medium storing software including instructions executable by one or more computers that, when executed, cause the one or more computers to perform the operations described with reference to any of the present inventions 1014-1027. [The present invention 1030] 1. A method for classifying a biological sample, comprising: obtaining, by one or more computers, first data representing one or more initial classifications of the biological sample that have been predetermined based on the RNA sequence of the biological sample; obtaining, by the one or more computers, second data representing another initial classification of the biological sample previously determined based on the DNA sequence of the biological sample; providing, by the one or more computers, at least a portion of the first data and the second data as input to a dynamic voting engine trained to predict a target biological sample classification based on processing of a plurality of initial biological sample classifications; processing, by the one or more computers, the provided input data through the dynamic voting engine; obtaining, by the one or more computers, output data generated by the dynamic voting engine based on processing by the dynamic voting engine of the provided input data; and determining, by the one or more computers, a target biological sample classification of the biological sample based on the obtained output data. The method comprising: [The present invention 1031] obtaining, by one or more computers, first data representing one or more initial classifications of the biological sample that have been predetermined based on the RNA sequence of the biological sample; obtaining data representing a cancer type classification of the biological sample based on the RNA sequence of the biological sample; obtaining data representing the organ from which the biological sample originated based on the RNA sequence of the biological sample; and obtaining data representing histological findings of the biological sample based on the RNA sequence of the biological sample; Including, and, providing at least a portion of the first data and the second data as input to the dynamic voting engine, providing data representing the obtained cancer type classification, data representing the organ of origin of the obtained biological sample, data representing the obtained histological examination findings, and the second data as inputs to the dynamic voting engine. The method of the present invention 1030, comprising: [The present invention 1032] The method of the present invention 1030, wherein the dynamic voting engine includes one or more machine learning models. [The present invention 1033] Dynamic voting engine training obtaining labeled training data items including (I) one or more initial classifications, including data indicating a cancer classification type, data indicating an initial organ of origin, data indicating a histological examination finding, or data indicating the output of a DNA analysis engine, and (II) a target biological sample classification; generating training input data for input to the dynamic voting engine based on the obtained training data items; processing the generated training input data through said dynamic voting engine; obtaining output data generated by the dynamic voting engine based on processing by the dynamic voting engine of the generated training input data; and adjusting one or more parameters of the dynamic voting engine based on a level of similarity between the output data and the labels of the obtained training data items. The method of the present invention 1030, comprising: [The present invention 1034] determining an initial classification of the biological sample based on the DNA sequence of the biological sample; receiving, by one or more computers, biological signatures representative of biological samples obtained from cancerous neoplasms in a first portion of the body, wherein the model includes a cancer biological signature for each of a plurality of different types of cancerous biological samples, each of the cancerous biological signatures including at least a first cancer biological signature representative of a molecular profile of a cancerous biological sample from one or more other first portions of the body and a second cancer biological signature representative of a molecular profile of a cancerous biological sample from one or more other second portions of the body; performing, by the one or more computers and using a pairwise analysis model, a pairwise analysis of the biological signatures using the first cancer biological signature and the second cancer biological signature; generating a likelihood that a cancerous neoplasm in the first part of the body was caused by a cancer in the second part of the body based on the pairwise analysis performed by the one or more computers; and storing, by the one or more computers, the generated likelihoods in a memory device. The method of the present invention 1030, comprising: [This invention 1035] A system including one or more computers and one or more storage media storing instructions that, when executed by the one or more computers, cause the one or more computers to perform each of the operations described with reference to any of the present inventions 1030-1034. [The present invention 1036] A non-transitory computer-readable medium storing software including instructions executable by one or more computers that, when executed, cause the one or more computers to perform the operations described with reference to any of the present inventions 1030-1034. [This invention 1037] (a) obtaining a biological sample from a subject with cancer; (b) performing at least one assay on the sample to evaluate one or more biomarkers, thereby obtaining a biosignature of the sample; (c) providing the biosignature to a model trained to predict at least one attribute of cancer, wherein the model comprises at least one predetermined biosignature indicative of at least one attribute, wherein the at least one attribute of cancer is selected from the group comprising primary tumor origin, cancer / disease type, organ group, histological examination findings, and any combination thereof; (d) processing the provided biosignatures through the model by one or more computers; and (e) outputting from the model a prediction of at least one attribute of cancer. A method comprising: [The present invention 1038] The method of the present invention 1037, wherein the biological sample comprises formalin-fixed paraffin-embedded (FFPE) tissue, fixed tissue, core needle biopsy, fine needle aspirate, unstained slide, fresh frozen (FF) tissue, formalin sample, tissue contained in a solution that preserves nucleic acid or protein molecules, fresh sample, malignant fluid, body fluid, tumor sample, tissue sample, or any combination thereof. [This invention 1039] The method of any one of claims 1037 to 1038, wherein the biological sample comprises cells from a solid tumor, a body fluid, or a combination thereof. [The present invention 1040] The method of any of claims 1038 to 1039, wherein the body fluid comprises malignant fluid, pleural fluid, peritoneal fluid, or any combination thereof. [The present invention 1041] 1040. The method of any of claims 1038-1040, wherein the body fluid comprises peripheral blood, serum, plasma, ascites, urine, cerebrospinal fluid (CSF), sputum, saliva, bone marrow, synovial fluid, aqueous humor, amniotic fluid, earwax, breast milk, bronchoalveolar lavage fluid, semen, prostatic fluid, Cowper's fluid, pre-ejaculatory fluid, female ejaculate, sweat, feces, tears, cyst fluid, pleural fluid, peritoneal fluid, pericardial fluid, lymph, chyme, chyle, bile, interstitial fluid, menstrual blood, pus, sebum, vomit, vaginal fluid, mucosal secretions, stool, pancreatic juice, sinus lavage, bronchopulmonary aspirate, blastocyst cavity fluid, or umbilical cord blood. [The present invention 1042] Any of the methods of claims 1037 to 1041, wherein performing at least one assay in step (b) comprises determining the presence, level, or status of a protein or nucleic acid for each of one or more biomarkers, and optionally, the nucleic acid comprises deoxyribonucleic acid (DNA), ribonucleic acid (RNA), or a combination thereof. [This invention 1043] i. the presence, level, or status of at least one of the proteins is determined using a technique selected from immunohistochemistry (IHC), flow cytometry, immunoassay, antibody or functional fragment thereof, aptamer, mass spectrometry, or any combination thereof, and optionally the presence, level, or status of all of the proteins is determined using said technique; and / or ii. the presence, level, or status of at least one of the nucleic acids is determined using a technique selected from polymerase chain reaction (PCR), in situ hybridization, amplification, hybridization, microarray, nucleic acid sequencing, dye termination sequencing, pyrosequencing, next generation sequencing (NGS; high-throughput sequencing), whole exome sequencing, whole genome sequencing, whole transcriptome sequencing, or any combination thereof, and optionally the presence, level, or status of all of the nucleic acids is determined using the technique; The method of the present invention 1042. [This invention 1044] The method of the present invention 1043, wherein the nucleic acid state comprises a sequence, mutation, polymorphism, deletion, insertion, substitution, translocation, fusion, truncation, duplication, amplification, repeat, copy number, copy number variation (CNV; copy number alteration; CNA), or any combination thereof. [This invention 1045] The method of any one of claims 10 to 44, wherein the state of the nucleic acid consists of or comprises copy number. [The present invention 1046] Any of the methods of claims 1037 to 1045, wherein at least one assay comprises next-generation sequencing, optionally using the next-generation sequencing to evaluate: i) at least one of the genes, genomic information / signatures, and fusion transcripts in any of Tables 121 to 130, or any combination thereof; ii) at least one of the genes and / or transcripts in any table selected from Tables 117 to 120, INSM1, and any combination thereof; iii) the whole exome; iv) the whole transcriptome; v) at least one gene in any table selected from Tables 2 to 116, and any combination thereof; or vi) any combination thereof. [This invention 1047] Any of the methods of claims 1037 to 1046, wherein predicting at least one attribute of cancer comprises determining the probability that the attribute is a member of each of a plurality of such attributes, and selecting the attribute having the highest probability. [This invention 1048] i. Primary tumor origin or multiple primary tumor origins are prostate, bladder, endocervix, peritoneum, stomach, esophagus, ovary, parietal lobe, cervix, endometrium, liver, sigmoid colon, superior lateral quadrant of breast, uterus, pancreas, head of pancreas, rectum, colon, breast, intrahepatic bile duct, cecum, gastroesophageal junction, frontal lobe, kidney, tail of pancreas, ascending colon, descending colon, gallbladder, appendix, rectosigmoid colon, fallopian tube, brain, lung, temporal lobe, lower esophagus3 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, or all 38 or contains at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, or all 38; ii. The primary tumor origin or origins of multiple primary tumors is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, or fifteen of the following: breast adenocarcinoma, central nervous system cancer, cervical adenocarcinoma, bile duct carcinoma, colon adenocarcinoma, gastroesophageal adenocarcinoma, gastrointestinal stromal tumor (GIST), hepatocellular carcinoma, lung adenocarcinoma, melanoma, meningioma, ovarian granulosa cell tumor, ovarian and fallopian tube adenocarcinoma, pancreatic adenocarcinoma, prostate adenocarcinoma, renal cell carcinoma, squamous cell carcinoma, thyroid carcinoma, urothelial carcinoma, endometrial adenocarcinoma, and uterine sarcoma; consisting of, including, or containing at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or 21; iii. The type of cancer / disease is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22 of the following: adrenocortical carcinoma; bile duct, cholangiocarcinoma; breast cancer; central nervous system (CNS); cervical cancer; colon cancer; endometrial cancer; gastrointestinal stromal tumor (GIST); gastroesophageal cancer; kidney renal cell carcinoma; liver hepatocellular carcinoma; lung cancer; melanoma; meningioma; Merkel; neuroendocrine; ovarian granulosa cell tumor; ovarian, fallopian tube, peritoneal; pancreatic cancer; pleural mesothelioma; prostate adenocarcinoma; retroperitoneal; salivary and parotid glands; small intestine adenocarcinoma; squamous cell carcinoma; thyroid cancer; urothelial carcinoma; uterine consisting of 23, 24, 25, 26, 27, or all 28, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, or all 28, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, or all 28; iv. One, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, or all seventeen of the following organ groups: adrenal glands; bladder; brain; breast; colon; eye; female reproductive tract and peritoneum (FGTP); gastroesophageal; head, face, or neck, NOS; kidneys; liver, gallbladder, ducts; lungs; pancreas; prostate; skin; small intestine; thyroid and / or v. Histological findings are one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, thirteen, fourteen, fifteen, six, seven, eight, nine, ten, ten, twelve, thirteen ... consisting of, including, or containing at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, or 29; Any of methods 1037 to 1047 of the present invention. [This invention 1049] at least one predetermined biosignature indicative of at least one attribute of cancer, and optionally the type of cancer / disease, comprising a selection of biomarkers according to Table 118; and optionally i. the predetermined biosignature indicative of adrenocortical carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 112000, 113000, 114000, 115000, consisting of 1, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ii. The predetermined biosignature indicative of bile duct, cholangiocarcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 11209, 11309, 11409, 11509 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iii. the predetermined biosignature indicative of breast cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, GATA3, ANKRD30A, KRT15, KRT7, S100A2, PAX8, MUC4, KRT18, HNF1B, S100A1, PIP, SOX2, MDM2, MUC5AC, PMEL, TFF1, KRT16, KRT6B, S100A6, and SERPINB5; consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iv. The predetermined biosignature indicative of the central nervous system (CNS) is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, consisting of 1, 16, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; v. The predetermined biosignature indicative of cervical cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of ESR1, CDKN2A, CCND1, LIN28A, PGR, SMARCB1, CEACAM4, S100B, FUT4, PSAP, MUC2, MDM2, NCAM1, SATB2, TNFRSF8, CD79A, S100A13, VHL, CD3G, and TPSAB1. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vi. The predetermined biosignature indicative of colon cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 1 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vii. The predetermined biosignature indicative of endometrial cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18, or a combination thereof, including PAX8, PGR, ESR1, VHL, CALD1, LIN28B, NAPSA, KRT5, S100A6, DES, FLI1, DSC3, S100P, CEACAM16, PDPN, ARG1, TLE1, WT1, BCL6, and MLH1. consisting of 1, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; viii. The predetermined biosignature indicative of gastrointestinal stromal tumor (GIST) is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, ANO1, SDC1, KRT19, MUC1, KRT8, ACVRL1, KIT, CDH1, S100A2, KRT7, ERBB2, S100A16, ENO2, S100A9, TPSAB1, KRT17, PAX8, PGR, ESR1, and VHL; consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ix. The predetermined biosignature indicative of gastroesophageal cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or consisting of 1, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; x. The predetermined biosignature indicative of kidney renal cell carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, or 16 of: PAX8, CDH1, CDKN2A, S100P, S100A14, HAVCR1, HNF1B, KL, KRT7, MUC1, POU5F1, VHL, PAX2, AMACR, BCL6, S100A13, CA9, MDM2, SALL4, and SYP. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xi. The predetermined biosignature indicative of liver hepatocellular carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, consisting of 5, 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xii. The predetermined biosignature indicative of lung cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 of: NAPSA, SOX2, CEACAM7, KRT7, S100A10, CEACAM6, S100A1, PAX8, AR, VHL, S100A13, CD99L2, KRT5, MUC1, CEACAM1, SFTPA1, TMPRSS2, TFF1, KRT15, and MUC4. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiii. The predetermined biosignature indicative of melanoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of S100B, KRT8, PMEL, KRT19, MUC1, MLANA, S100A14, S100A13, MITF, S100A1, VIM, CDKN2A, ACVRL1, MS4A1, POU5F1, TPM1, UPK3A, S100P, GATA3, and CEACAM1. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiv. The predetermined biosignature indicative of meningioma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 51, or 52, or 53, or 54, or 55, or 56, or 57, or 58, or 59, or 60, or 61, or 62, or 63, or 64, or 65, or 66, or 67, or 68, or 69, or 70, or 71, or 72, or 73, or 74, or 75, or 76, or 77, or 78, or 79, or 80, or 81, or 82, or 83, or 84, or 85, or 86, or 87, or 88, or 89, or 90, or 91, or 92, or 93, or 94, or 95, or 96, or 97, or 98, or 99, or 100, or 100, or 100, or 110, or consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xv. The predetermined biosignature indicative of Merkel cell carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of ISL1, ERBB2, S100A12, S100A14, MYOG, SDC1, KRT7, S100PBP, MME, TMPRSS2, CEACAM5, CPS1, CR1, MUC4, CEACAM4, CA9, ENO2, FLI1, LIN28B, and MLANA. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xvi. The neuroendocrine predetermined biosignature is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of NCAM1, ISL1, ENO2, POU5F1, TFF3, SYP, TPM4, S100A1, S100Z, MUC4, MPO, DSC3, CEACAM4, S100A7, ERBB2, CDX2, S100A11, KRT10, CEACAM5, and CEACAM3. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xvii. The predetermined biosignature indicative of ovarian granulosa cell tumor is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, or 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 51, or 52, or 53, or 54, or 55, or 56, or 57, or 58, or 59, or 60, or 61, or 62, or 63, or 64, or 65, or 66, or 67, or 68, or 69, or 70, or 71, or 72, or 73, or 74, or 75, or 76, or 77, or 78, or 79, or 80, or 81, or 82, or 83, or 84, or 85, or 86, or 87, or 88, or 89, or 90, or 91, or 92, or 93, or 94, or 95, or 96, or 97, or 98, or 99, or 100, or 100, or consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xviii. A predetermined biosignature indicative of ovary, fallopian tube, or peritoneum is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 of WT1, PAX8, INHA, TFE3, S100A13, FOXL2, TLE1, MSLN, POU5F1, CEACAM3, ALPP, S100A10, FUT4, NKX3-1, CEACAM5, SOX2, ESR1, ENO2, ACVRL1, and SYP. , consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xix. The predetermined biosignature indicative of pancreatic cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xx. The predetermined biosignature indicative of pleural mesothelioma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, or 16 of UPK3B, CALB2, WT1, SMARCB1, PDPN, INHA, CEACAM1, MSLN, KRT5, CA9, S100A13, SF1, CDH1, CDKN2A, FLI1, SYP, CEACAM3, CPS1, SATB2, and BCL6. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxi. The predetermined biosignature indicative of prostate adenocarcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of: KRT7, KLK3, NKX3-1, AMACR, S100A5, MUC1, MUC2, UPK3A, KL, CPS1, MSLN, PMEL, CNN1, SERPINA1, KRT2, CGB3, TMPRSS2, CEACAM6, SDC1, and AR. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxii. The predetermined biosignature indicative of the retroperitoneum is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18, or a combination thereof. consisting of 1, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxiii. The predetermined biosignature indicative of salivary and parotid glands is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 11 consisting of 1, 16, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxiv. The predetermined biosignature indicative of small intestine adenocarcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 11 consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxv. The predetermined biosignature indicative of squamous cell carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxvi. The predetermined biosignature indicative of thyroid cancer is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 11 consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xxvii. The predetermined biosignature indicative of urothelial carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18, or a combination thereof; consisting of 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; and / or xxviii. The predetermined biosignature indicative of uterus is selected from KRT19, KRT18, NCAM1, DES, FOXL2, CD79A, S100A14, ESR1, MSLN, MITF, UPK3B, TPM1, ENO2, S100P, MLH1, KRT8, CDH1, TPM4, SATB2, and MDM2. consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; Any of methods 1037 to 1048 of the present invention. [The present invention 1050] at least one predetermined biosignature indicative of at least one attribute of cancer, and optionally, organ type, comprising a selection of biomarkers according to Table 119; and optionally, i. The predetermined biosignature indicative of the adrenal gland is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 12 consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ii. the predetermined biosignature indicative of bladder is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120 consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iii. the predetermined biosignature indicative of brain is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of: KRT8, ANO1, S100B, S100A14, SOX2, PDPN, CEACAM1, S100A2, NCAM1, MSH2, KRT18, NKX2-2, WT1, S100A1, GPC3, TLE1, CD5, S100Z, S100A16, and PGR; , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iv. The predetermined biosignature indicative of breast is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 11209, 11309, 11409, 11509, 11609, 11 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; v. The predetermined biosignature indicative of the colon is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 51, or 52, or 53, or 54, or 55, or 56, or 57, or 58, or 59, or 60, or 61, or 62, or 63, or 64, or 65, or 66, or 70, or 71, or 72, or 73, or 74, or 75, or 76, or 77, or 78, or 79, or 80, or 81, or 82, or 83, or 84, or 85, or 86, or 87, or 88, or 89, or 90, or 91, or 92, or 93, or 94, or 95, or 96, or 97, or 98, or 99, or 100, or 100, or 101, or 102, or 103, or 10 , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vi. The predetermined biosignature indicative of an eye is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 1109, 1111, 112, 113, 114, 115, 116, 117, 118, 119, consisting of 7, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; vii. A predetermined biosignature indicative of female reproductive tract and peritoneum (FGTP) is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 1 consisting of 1, 16, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; viii. the predetermined biosignature indicative of gastroesophageal disease is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ix. A predetermined biosignature indicative of head, face, or neck, NOS is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14 of: KRT5, DSC3, TP63, HNF1B, MUC5AC, PAX5, KRT15, PGR, S100A6, TMPRSS2, MME, S100B, ENO2, CEACAM8, SALL4, ANO1, GATA3, LIN28B, CD99L2, and UPK3A. , consisting of 15, 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; x. The predetermined biosignature indicative of kidney is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17 of PAX8, CDH1, HNF1B, S100A14, HAVCR1, CDKN2A, S100P, KL, KRT7, S100A13, VHL, PAX2, POU5F1, MUC1, AMACR, ENO2, MDM2, WT1, SYP, and AR. , 18, 19, or 20 features, or comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xi. The predetermined biosignature indicative of liver, gallbladder, or duct is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 selected from SERPINA1, VIL1, HNF1B, ANO1, ESR1, SOX2, MUC4, S100A2, ENO2, CNN1, POU5F1, KRT5, S100A9, UPK3B, PSAP, KRT7, KL, TMPRSS2, SATB2, and S100A14; consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xii. the predetermined biosignature indicative of lung is selected from NAPSA, SOX2, SFTPA1, VHL, S100A1, S100A10, AR, TMPRSS2, CD99L2, CEACAM7, CEACAM6, KRT6A, KRT7, NCAM2, TP63, CEACAM1, MUC4, KRT20, CNN1, and ISL1; consisting of 16, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiii. the predetermined biosignature indicative of pancreas is selected from PDX1, ANO1, SERPINA1, GATA3, ISL1, MUC5AC, SMAD4, FUT4, CD5, SMN1, NKX2-2, TFF1, AMACR, SOX2, HNF1B, S100Z, MSLN, DES, S100A4, and CALB2; consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xiv. The predetermined biosignature indicative of prostate is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or 37, or 38, or 39, or 40, or 41, or 42, or 43, or 44, or 45, or 46, or 47, or 48, or 49, or 50, or 510, or 520, or 530, or 540, or 550, or 560, or 570, or 580, or 590, or 600, or 610, or 620, or 630, or 640, or 650, or 660, or 670, or 680, or 690, or 700, or 710, or 720, or 730, or 740, or 750, or 760, or 770, or 780, or 790, or 800, or 810, or 820, or 830, or 840, or 850, or 860, or 870, or 880, or 890, or 900, or 910, or 920, or 930, or 940, or 95 consisting of 1, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xv. The predetermined biosignature indicative of skin is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 of: S100B, KRT8, PMEL, KRT7, KRT19, GATA3, MDM2, AMACR, TPM1, TLE1, CEACAM19, CEACAM16, MLANA, TMPRSS2, AR, TFF3, BCL6, CR1, NCAM1, and MS4A1. , consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; xvi. The predetermined biosignature indicative of the small intestine is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, and 18, including: MUC2, CDH17, FLI1, KRT20, CDX2, CD5, KRT7, MPO, CNN1, DSC3, DES, ANO1, S100A1, CALD1, TFF1, SPN, MITF, TMPRSS2, CALB2, and CEACAM16. , 19, or 20 features, or comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; and / or xvii. The predetermined biosignature indicative of thyroid is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or 18, or 19, or 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 31, or 32, or 33, or 34, or 35, or 36, or consisting of 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; Any of methods 1037 to 1048 of the present invention. [This invention 1051] at least one predetermined biosignature indicative of at least one attribute of cancer, and optionally, histology, comprises a selection of biomarkers according to Table 120; and optionally, i. the predetermined biosignature indicative of adenocarcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119 consisting of 6, 17, 18, 19, or 20 features, including 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or including at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; ii. the predetermined biosignature indicative of adenoid cystic carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 110, 111, 112, 113, 114, 115, 116, 117, 11 consisting of 1, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iii. the predetermined biosignature indicative of adenosquamous carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 1109, 1109, 11109, 11209, 11309, 11409, 11509, 1 consisting of 1, 16, 17, 18, 19, or 20 features, comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features, or comprising at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 features; iv. The predetermined biosignature indicative of adrenocortical carcinoma is selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13...
Claims
1. 1. A method for classifying a biological sample, comprising: obtaining, by one or more computers, first data representing one or more initial classifications of the biological sample that have been previously determined based on the RNA sequence of the biological sample; obtaining, by the one or more computers, second data representing another initial classification of the biological sample previously determined based on the DNA sequence of the biological sample; providing, by the one or more computers, at least a portion of the first data and the second data as input data to a dynamic voting engine trained to predict a target biological sample classification based on processing of a plurality of initial biological sample classifications, wherein training the dynamic voting engine includes: (I) one or more initial training classifications including data indicative of an initial organ of origin; and (II) Labeling of biological specimen classification obtaining labeled training data items including generating training input data for input to the dynamic voting engine based on the obtained training data items; processing the generated training input data through the dynamic voting engine; obtaining output data generated by the dynamic voting engine based on processing by the dynamic voting engine of the generated training input data; adjusting one or more parameters of the dynamic voting engine based on a level of similarity between the output data and the labels of the labeled training data items; a process comprising: processing, by the one or more computers, the provided input data through processing by the dynamic voting engine of the provided input data; obtaining, by the one or more computers, output data generated by the dynamic voting engine based on the dynamic voting engine; and determining, by the one or more computers, the target biological sample classification of the biological sample based on the obtained output data. The method comprising:
2. obtaining, by the one or more computers, the first data representing the one or more initial classifications of the biological sample that were previously determined based on the RNA sequence of the biological sample; obtaining data representing a cancer type classification of the biological sample based on the RNA sequence of the biological sample; obtaining data representative of the organ from which the biological sample originated based on the RNA sequence of the biological sample; and obtaining data representing histological findings of the biological sample based on the RNA sequence of the biological sample; Including, providing at least a portion of the first data and the second data as input to the dynamic voting engine, providing the obtained data representing the cancer type classification, the obtained data representing the organ of origin of the biological sample, the obtained data representing the histological examination findings, and the second data as inputs to the dynamic voting engine.
2. The method of claim 1, comprising:
3. 10. The method of claim 1, wherein the dynamic voting engine comprises one or more machine learning models.
4. 10. The method of claim 1, wherein the one or more initial training classifications further comprise data indicative of a cancer classification type, data indicative of a histological examination finding, or data indicative of an output of a DNA analysis engine.
5. Predetermining the alternative initial classification of the biological sample based on the DNA sequence of the biological sample is performed by a pairwise analysis model; and receiving, by the one or more computers, biological signatures representative of biological samples obtained from cancerous neoplasms in a first portion of a body, wherein the pairwise analytical model includes a cancer biological signature for each of a plurality of different types of cancerous biological samples, each of the cancer biological signatures including at least (1) a first cancer biological signature representative of a molecular profile of a cancerous biological sample from the first portion of one or more other bodies, and (2) a second cancer biological signature representative of a molecular profile of a cancerous biological sample from a second portion of one or more other bodies; performing, by the one or more computers and using the pairwise analysis model, a pairwise analysis of the biological signatures using the first cancer biological signature and the second cancer biological signature; generating a likelihood that a cancerous neoplasm in the first part of the body was caused by a cancer in the second part of the body based on the pairwise analysis performed by the one or more computers; and storing the generated likelihoods in a memory device by the one or more computers.
2. The method of claim 1, comprising:
6. 6. The method of claim 1, wherein the one or more initial classifications and the further initial classification are determined by respective models, and the dynamic voting engine uses more weight on a model that is more accurate than another model.
7. 7. The method of any one of claims 1 to 6, wherein said alternative initial classification of said biological sample is determined based on copy number alterations of said DNA sequences of said biological sample.
8. 8. The method of claim 1, wherein the biological sample comprises a cancer sample and the target biological sample classification comprises an attribute of cancer.
9. 9. The method of claim 8, wherein the cancer attribute is tissue of origin (TOO).
10. 10. The method of any one of claims 1 to 9, wherein said target biological sample classification further comprises cancer type or cancer histology.
11. 11. The method of any one of claims 1 to 10, wherein the one or more initial classifications are determined based on or derived from actual data generated by one or more initial classification engines.
12. 12. The method of claim 11, wherein the one or more initial classification engines are selected from the group consisting of: (a) a cancer type classification engine, (b) an initial organ of origin engine, and (c) a histology findings engine.
13. 12. The method of claim 11, wherein the one or more initial classification engines include an initial organ-of-origin engine, and wherein the one or more initial classification engines process data derived from the biological sample.
14. 12. The method of claim 11, wherein the one or more initial training classifications are determined based on or derived from simulation data generated to represent initial classifications to be generated by the one or more initial classification engines when the one or more initial classification engines process RNA sequences derived from the biological sample.
15. 15. The method of any one of claims 11 to 14, wherein transcript expression level data is used to train said one or more initial classification engines for cancer attributes.
16. 16. The method of claim 15, wherein said transcript expression level data comprises data for transcripts from one or more of the following genes: 。
17. 17. A system comprising one or more computers and one or more storage media storing instructions that, when executed by the one or more computers, cause the one or more computers to perform the method of any one of claims 1 to 16.
18. 17. A non-transitory computer readable medium storing software comprising instructions executable by one or more computers that, when executed, cause the one or more computers to perform the method of any one of claims 1 to 16.