Antibodies that bind to PD-L1 and uses thereof
Monoclonal antibodies with specific CDR regions are developed to enhance PD-L1 blocking and T cell activation, addressing resistance issues and improving therapeutic efficacy in cancers and infectious diseases.
Patent Information
- Application Number
- JP2023538083
- Authority / Receiving Office
- JP · JP
- Patent Type
- Patents
- Current Assignee / Owner
- Priority Date
- 2021-03-16
- Filing Date
- 2021-08-30
- Publication Date
- 2024-12-17
- Estimated Expiration
- 2041-08-30
AI Technical Summary
Existing anti-PD-L1 antibodies show limited efficacy in treating cancers and infectious diseases, with some patients developing resistance, necessitating the development of antibodies with different binding affinities and blocking capacities to improve therapeutic outcomes.
Development of monoclonal antibodies, including murine, chimeric, and humanized antibodies, with specific VH-CDR and VL-CDR regions that exhibit enhanced binding to PD-L1, blocking PD-L1-PD-1 interaction, and inducing T cell activation, thereby improving antitumor and antiviral activity.
The antibodies demonstrate equivalent or superior binding capacity and blocking activity to existing antibodies, with enhanced in vivo antitumor and antiviral effects, including increased T cell activation and cytokine release.
Smart Images

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Abstract
Description
[Technical field]
[0001] [RELATED APPLICATIONS AND INCORPORATIONS BY REFERENCE] This application claims priority to Chinese Patent Application No. 202110284404.8, filed on March 16, 2021.
[0002] The above applications and all documents cited therein or cited during the prosecution thereof ("Application Citations"), and all documents cited or referenced herein, including but not limited to all literature documents, patents, published patent applications cited herein ("Citations herein"), and all documents cited or referenced in the citations herein, together with any manufacturer's instructions, descriptions, product specifications, and product sheets for any products mentioned herein or in any documents incorporated by reference herein, are hereby incorporated by reference herein for use in the practice of this invention. More specifically, all referenced documents are incorporated by reference to the same extent as if each individual document was specifically and individually indicated to be incorporated by reference. Genbank sequences referred to in this disclosure are incorporated by reference by making them the Genbank sequences as of the earliest effective filing date of this disclosure.
[0003] Citation or identification of any document in this application is not an admission that such document is available as prior art to the present disclosure.
[0004] The present disclosure relates to antibodies, or antigen-binding portions thereof, that specifically bind to human PD-L1, their preparation and uses, particularly in the treatment of diseases associated with PD-L1 signaling, such as cancer and infectious diseases. [Background technology]
[0005] T cell-mediated immunity has evolved to recognize and destroy pathogen-infected and abnormal cells, including cancer cells. T cell activity is controlled by a series of costimulatory and co-inhibitory receptors and their ligands, known as immune checkpoints, that are important for self-tolerance, preventing the immune system from indiscriminately attacking tissues.
[0006] Among the immune checkpoint pathways, PD-L1 / PD-1 signaling has revealed great clinical benefits. PD-1, a type I transmembrane protein that negatively regulates immune responses, is mainly expressed on antigen-experienced memory T cells in peripheral tissues and generally less expressed on B cells, activated monocytes, dendritic cells, and natural killer cells (Keir ME et al., (2008) Annu Rev Immunol. 26: 677-704; Ishida Y et al., (1992) EMBO J. 11(11): 3887-3895). PD-L1 and PD-L2 are ligands for PD-1. PD-L1 is a type I transmembrane protein consisting of two extracellular domains (IgV and IgC-like domains), a transmembrane domain, and an intracellular domain. It is constitutively expressed on antigen-presenting cells, T cells, B cells, monocytes, and epithelial cells, and is upregulated in the presence of proinflammatory cytokines in many of these cell types (Keir ME et al., (2008) supra; Chen J et al., (2016) Ann Oncol. 27(3):409-416). Several studies have shown that PD-L1 induces IL-10 release, thus producing an inhibitory effect on T cells (Dong H et al., (1999) Nat Med. 5(12):1365-1369). PD-L2 expression is mostly restricted to antigen-presenting cells, with inducible expression being found, for example, in dendritic cells and macrophages. Accumulating evidence has shown that the PD-1 axis, when bound to PD-L1, affects cytokine (e.g., IFN-γ, TNF-α, and IL-2) production to attenuate T cell responses against normal cells / tissues (Keir ME et al., (2008) supra; Chen J et al., (2016) supra). PD-1-PD-L1 interaction also suppresses the secretion of cell survival factors, the expression of transcription factors associated with effector cell function, and the lytic activity of activated B cells and NK cells (Terme M et al., (2011) Cancer Res. 71(16):5393-5399; Fanoni D et al., (2011) Immunol Lett. 134(2):157-160).PD-1 is also highly expressed on regulatory T cells (Tregs) and may promote Treg activation and proliferation to further suppress immune responses (Francisco LM et al., (2009) J Exp Med. 206(13):3015-3029).
[0007] The PD-1 pathway can be exploited by tumor cells to evade the host's immune surveillance. Specifically, a large proportion of tumor-infiltrating lymphocytes (TILs) express high levels of PD-1, and many tumor cells, including melanoma, ovarian cancer, lung cancer, and renal cancer cells, constitutively express PD-1 ligands, particularly PD-L1 (Dong H et al., (2002) Nat Med. 8(8): 793-800; Kim J et al., (2005) Am J Respir Cell Mol Biol. 33(3): 280-289; Lee SK et al., (2005) J Dermatol Sci. 40(2): 95-103). PD-L1 is also expressed by myeloid cells, including macrophages and dendritic cells in the microenvironment. Thus, in the microenvironment, PD-L1-PD-1 interactions mediate T cell dysfunction and exhaustion, IL-10 release, and CD8 + This leads to a decrease in cytotoxicity by T cells against tumor cells, resulting in tumor cell growth (Zou W, Chen L. (2008) Nat Rev Immunol. 8(6): 467-477; Sun Z et al., (2015) Cancer Res. 75(8): 1635-1644). Immune responses can be further suppressed by Tregs in the microenvironment (Francisco LM et al., (2009) supra) and PD-L1-CD80 heterodimers that attenuate CD80-CTLA4 interactions (Butte MJ et al., (2007) Immunity. 27(1): 111-122; Paterson AM et al., (2011) J Immunol. 187(3): 1097-1105).
[0008] For example, antibody-mediated PD-1 / PD-L1 blockade can induce durable tumor remissions in several cancers, including solid and hematological tumors. Antibodies targeting the PD-L1-PD-1 axis have been evaluated in over 1,000 clinical trials to date for the treatment of solid tumors such as melanoma, non-small cell lung cancer (NSCLC), renal cell carcinoma (RCC), Hodgkin lymphoma, bladder cancer, head and neck carcinoma, neuroendocrine tumors, microsatellite instable-high (MSI-H) and mismatch repair-deficient (dMMR) solid tumors, and hematological tumors such as mantle cell lymphoma, diffuse large B-cell lymphoma, and follicular lymphoma (Akinleye A, Rasool Z. (2019) J Hematol Oncol. 12(1):92; Chong Sun et.al. (2018) Immunity 20;48(3):434-452). Three anti-PD-L1 antibodies, namely atezolizumab, durvalumab, and avelumab, have been approved by the FDA. Atezolizumab is a humanized IgG1 antibody that can block PD-L1-PD-1 and PD-L1-CD80 binding, and its Fc region binds PD-L1 + It is designed not to induce antibody dependent cell mediated cytotoxicity (ADCC) to eliminate damage to T cells. Atezolizumab has shown clinical efficacy in solid and non-solid tumors, including NSCLC, melanoma, RCC, colorectal cancer, gastric cancer, head and neck squamous cell carcinoma, and urothelial carcinoma. Similarly, the humanized antibody durvalumab can block the binding of PD-L1 to PD-1 or CD80, and inhibits PD-L1. +It is designed to avoid ADCC against T cells. It is effective, for example, in the treatment of urothelial carcinoma and NSCLC. Avelumab, another humanized IgG1 antibody with an unmodified Fc region, can block PD-L1-PD-1 and PD-L1-CD80 interactions and induce ADCC against tumor cells, and has shown good clinical outcomes in the treatment of Merkel cell carcinoma, urothelial carcinoma, and triple-negative breast cancer. Other anti-PD-L1 antibodies in clinical trials include embafolimab and BMS-936559. Anti-PD-L1 antibodies may be used in combination with other antibodies, targeted agents, and / or chemotherapeutic agents to better inhibit tumor growth.
[0009] However, despite the broad-spectrum antitumor effects of anti-PD-1 / PD-L1 therapy, not all patients are responsive to this therapy, and some patients reported promising initial responses but ultimately became resistant to the therapy. It may be crucial to discover the causes of such acquired resistance and to develop new drugs / therapies. There remains a need for more anti-PD-L1 antibodies with different and / or improved pharmaceutical characteristics, for example, antibodies with different binding affinities, different blocking capacities against PD-1-PD-L1, and / or different binding epitopes.
[0010] PD-L1 / PD-1 blockade has also shown favorable effects in clinical or preclinical studies of acute or chronic viral, bacterial, or parasitic infections (Jubel JM et al., (2020) Front Immunol. 11: 487). For example, in chronic infections with hepatitis B virus (HBV), hepatitis C virus (HCV), human immunodeficiency virus (HIV), or simian immunodeficiency virus (SIV), administration of anti-PD-L1 antibodies increased IFN-γ, IL-2, and TNFα release, functionally reversed T cell exhaustion, and improved viremia. Therefore, more anti-PD-L1 antibodies are also needed for infectious disease treatment. Summary of the Invention
[0011] The present disclosure provides isolated monoclonal antibodies, e.g., murine, human, chimeric or humanized monoclonal antibodies, or antigen-binding portions thereof, that bind to PD-L1 (e.g., human PD-L1, and monkey PD-L1), which have equivalent or higher binding ability to human and monkey PD-L1 proteins, equivalent blocking activity against PD-L1-PD-1 interaction, equivalent or better T cell activation ability, and equivalent or higher in vivo anti-tumor activity compared to prior art antibodies such as atezolizumab.
[0012] The antibodies, or antigen-binding portions thereof, of the disclosure can be used for a variety of applications, including the detection of PD-L1 protein and the treatment of PD-L1-associated diseases.
[0013] Thus, in one aspect, the disclosure provides a method for the preparation of a polypeptide comprising: i) a heavy chain variable region that may have a VH-CDR1 region, a VH-CDR2 region, and a VH-CDR3 region, and the VH-CDR1 region, a VH-CDR2 region, and a VH-CDR3 region may comprise an amino acid sequence having at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identity to or set forth in SEQ ID NOs: 7, 8, and 9, respectively; and / or ii) a VL-CDR1 region, a VL- 5, 6, 7, 8, 9, 10, 11, and 12, or an antigen-binding portion thereof.
[0014] The isolated monoclonal antibodies, or antigen-binding portions thereof, of the disclosure may comprise a heavy chain variable region and a light chain variable region, and the VH-CDR1 region, the VH-CDR2 region, the VH-CDR3 region, the VL-CDR1 region, the VL-CDR2 region, and the VL-CDR3 region may comprise an amino acid sequence having at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identity to or set forth in (1) SEQ ID NOs: 1, 2, 3, 4, 5, and 6, respectively; or (2) SEQ ID NOs: 7, 8, 9, 10, 11, and 12, respectively.
[0015] A heavy chain variable region of the present disclosure can have an amino acid sequence that is at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identical to or set forth in any one of SEQ ID NOs:13-23.
[0016] A light chain variable region of the present disclosure can have an amino acid sequence that is at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identical to or set forth in any one of SEQ ID NOs:24-32.
[0017] The isolated monoclonal antibodies or antigen-binding portions thereof of the present disclosure include: (1) SEQ ID NOs:13 and 24, respectively; (2) SEQ ID NOs:14 and 25, respectively; (3) SEQ ID NOs:14 and 26, respectively; (4) SEQ ID NOs:14 and 27, respectively; (5) SEQ ID NOs:15 and 25, respectively; (6) SEQ ID NOs:15 and 26, respectively; (7) SEQ ID NOs:15 and 27, respectively; (8) SEQ ID NOs:16 and 25, respectively; (9) SEQ ID NOs:16 and 26, respectively; (10) SEQ ID NOs:16 and 27, respectively; (11) SEQ ID NOs:17 and 25, respectively; (12) SEQ ID NOs:17 and 26, respectively; (13) SEQ ID NOs:17 and 27, respectively; (14) SEQ ID NOs:18 and 28, respectively; (15) SEQ ID NOs:19 and 29, respectively; (16) SEQ ID NOs:20 and 30, respectively; (17) SEQ ID NOs:21 and 22, respectively. (18) SEQ ID NOs: 20 and 32, respectively; (19) SEQ ID NOs: 21 and 30, respectively; (20) SEQ ID NOs: 21 and 31, respectively; (21) SEQ ID NOs: 21 and 32, respectively; (22) SEQ ID NOs: 22 and 30, respectively; (23) SEQ ID NOs: 22 and 31, respectively; (24) SEQ ID NOs: 22 and 32, respectively; (25) SEQ ID NOs: 23 and 30, respectively; (26) (27) heavy chain and light chain variable regions that may have amino acid sequences that are at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identical to or set forth in SEQ ID NOs: 23 and 32, respectively.
[0018] The isolated monoclonal antibodies of the present disclosure may comprise a heavy chain constant region and / or a light chain constant region. The heavy chain constant region may be an IgG1, IgG2, IgG3, or IgG4 heavy chain constant region, or a functional fragment thereof. The heavy chain constant region may be an IgG1, IgG2, IgG3, or IgG4 heavy chain constant region, or a functional fragment thereof. + or may be modified to induce reduced ADCC against PD-L1 cells. +The heavy chain constant region may be modified so as not to induce ADCC against cells. For example, the heavy chain constant region may be a human IgG1 constant region having an N297A mutation, for example, having the amino acid sequence of SEQ ID NO: 33. The light chain constant region may be a kappa light chain constant region, for example, a human kappa light chain constant region, for example, having the amino acid sequence of SEQ ID NO: 34. The N-terminus of the heavy chain constant region is linked to the C-terminus of the heavy chain variable region, and the N-terminus of the light chain constant region is linked to the C-terminus of the light chain variable region.
[0019] In certain embodiments, an antibody of the present disclosure may comprise or consist of two heavy chains and two light chains connected by disulfide bonds, each heavy chain having the above-mentioned heavy chain constant region, heavy chain variable region or CDR sequence, and each light chain having the above-mentioned light chain constant region, light chain variable region or CDR sequence. An antibody of the present disclosure may be, for example, a full-length antibody of the IgG4, IgG1 or IgG2 isotype. In other embodiments, an antibody or antigen-binding portion thereof of the present disclosure may be a single chain antibody or consist of an antibody fragment, such as a Fab or F(ab')2 fragment.
[0020] Exemplary antibodies, or antigen-binding portions thereof, of the disclosure are antagonists, bind to human / simian PD-L1, block PD-L1-PD-1 interaction, induce T cell activation, and / or have anti-tumor effects in vivo.
[0021] The present disclosure also provides an immunoconjugate comprising an antibody or antigen-binding portion thereof linked to a therapeutic agent, such as a cytotoxin or anti-cancer drug. The present disclosure also provides a bispecific molecule comprising an antibody or antigen-binding portion thereof linked to a second functional moiety (e.g., a second antibody) having a different binding specificity than the antibody or antigen-binding portion thereof of the present disclosure. In another embodiment, the antibody or antigen-binding portion thereof of the present disclosure can be part of a chimeric antigen receptor (CAR) or a T cell receptor (TCR). The present disclosure further provides an immune cell comprising a CAR or TCR of the present disclosure, such as a T cell and an NK cell. The antibody or antigen-binding portion thereof of the present disclosure can also be encoded by or used in conjunction with an oncolytic virus.
[0022] The disclosure further provides nucleic acid molecules encoding the antibodies, or antigen-binding portions thereof, of the disclosure, as well as expression vectors comprising such nucleic acid molecules and host cells comprising such expression vectors.A method is provided for preparing an anti-PD-L1 antibody, or antigen-binding portion thereof, using a host cell of the disclosure, the method comprising: (i) expressing the antibody, or antigen-binding portion thereof, in the host cell, and (ii) isolating the antibody, or antigen-binding portion thereof, from the host cell or a cell culture medium thereof.
[0023] The present disclosure provides compositions comprising an antibody or antigen-binding portion thereof, immunoconjugate, bispecific molecule, immune cell, oncolytic virus, nucleic acid molecule, expression vector, or host cell of the disclosure and a pharma- ceutically acceptable carrier.
[0024] In another aspect, the present disclosure provides a method for enhancing an immune response in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of a composition of the present disclosure. In some embodiments, the method comprises inducing T cell activation.
[0025] In another aspect, the present disclosure provides a method for treating or alleviating cancer in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of a composition of the present disclosure. The cancer may be a solid or hematological cancer, including but not limited to melanoma, non-small cell lung cancer, renal cell carcinoma, Hodgkin's lymphoma, bladder cancer, head and neck cancer, neuroendocrine tumors, mantle cell lymphoma, diffuse large B-cell lymphoma, and follicular lymphoma. In some embodiments, at least one additional anti-cancer antibody, such as an anti-PD-1 antibody, an anti-STAT3 antibody, an anti-ROR1 antibody, an anti-TIM-3 antibody, and / or an anti-CTLA-4 antibody, may be administered with the composition of the present disclosure. In certain embodiments, the composition of the present disclosure may be administered with a cytokine (e.g., IL-2 and / or IL-21), or a costimulatory antibody (e.g., anti-CD137 and / or anti-GITR antibody). In another embodiment, the composition of the present disclosure may be administered with a chemotherapeutic agent, which may be a cytotoxic agent.
[0026] In another aspect, the disclosure provides a method for treating or alleviating an infectious disease in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of an antibody, or antigen-binding portion thereof, of the present disclosure. The infectious disease can be a chronic viral, such as a chronic Hepatitis B virus (HBV), Hepatitis C virus (HCV), human immunodeficiency virus (HIV), or simian immunodeficiency virus (SIV) infection, a bacterial, fungal, or mycoplasmal infection. In certain embodiments, at least one additional anti-infective agent, such as an antiviral, antibacterial, antifungal, or anti-mycoplasmal agent, can be administered together with the antibody, or antigen-binding portion thereof, of the present disclosure.
[0027] Other features and advantages of the present disclosure will become apparent from the following detailed description and examples, which should not be construed as limiting. The contents of all references, Genbank entries, patents and published patent applications cited throughout this application are expressly incorporated herein by reference.
[0028] Accordingly, it is the object of the present invention not to encompass any previously known products, processes for making a product, or methods for using a product, and therefore the applicants reserve the right to, and hereby disclose the disclaimer of, any previously known products, processes, or methods. It is further noted that the present invention does not intend to encompass within its scope any products, processes, or methods for making a product or using a product that do not meet the description and enablement requirements of the USPTO (35 U.S.C. § 112, first paragraph) or the EPO (Article 83 EPC), and therefore the applicants reserve the right to, and hereby disclose the disclaimer of, any previously described products, processes for making a product, or methods for using a product. Compliance with Article 53(c) of the EPC, and Rules 28(b) and (c) of the EPC may be advantageous in the practice of the present invention. All rights to expressly disclaim any embodiment that is the subject of any licensed patent of the applicant in this line, or in any other line, or in any prior application of any third party, are expressly reserved. Nothing herein should be construed as a commitment.
[0029] It should be noted that in this disclosure, and particularly in the claims and / or paragraphs, terms such as "comprises," "comprised," "comprising," and the like, can have the meaning ascribed to them in U.S. patent law; for example, they can mean "includes," "included," "including," and the like; and terms such as "consisting essentially of" and "consists essentially of" have the meaning ascribed to them in U.S. patent law, for example, they allow for elements not expressly recited, but exclude elements found in the prior art or that affect a basic or novel characteristic of the invention.
[0030] The following detailed description, given by way of example and not intended to limit the invention to only the specific embodiments described, can be best understood in conjunction with the accompanying drawings, in which: [Brief description of the drawings]
[0031] [Figure 1] This shows that treatment with mouse anti-PD-L1 antibody at 100 μg / ml (A) or 0.1 to 10 μg / ml (B) increased IFN-γ secretion by T cells.
[0032] [Diagram 2] The binding ability of chimeric anti-PD-L1 antibodies to HEK293A / human PD-L1 cells (A), HEK293A / monkey PD-L1 cells (B), and HEK293A / mouse PD-L1 cells (C).
[0033] [Diagram 3] 1 shows the ability of chimeric anti-PD-L1 antibodies to block PD-1-PD-L1 interaction.
[0034] [Figure 4] Figure 2 shows that chimeric anti-PD-L1 antibodies induced IFN-γ secretion by T cells in a dose-dependent manner.
[0035] [Diagram 5] Figure 2 shows the binding ability of humanized 3C2 antibody to HEK293A / human PD-L1 cells (A), HEK293A / monkey PD-L1 cells (B), and HEK293A / mouse PD-L1 cells (C).
[0036] [Figure 6] Figure 2 shows the binding ability of humanized 56E5 antibody to HEK293A / human PD-L1 cells (A), HEK293A / monkey PD-L1 cells (B), and HEK293A / mouse PD-L1 cells (C).
[0037] [Figure 7]1 shows that humanized 56E5 and 3C2 antibodies induced IFN-γ secretion by T cells in a dose-dependent manner.
[0038] [Figure 8] 4 shows SPR curves of anti-PDL1 antibody 56E5VH5VL4 in competition with 3C2VH4VL4 (A), 56E5VH5VL4 (B), atezolizumab (C), avelumab (D) and durvalumab (E) for PD-L1 binding.
[0039] [Figure 9] 4 shows SPR curves of anti-PDL1 antibody 3C2VH4VL4 in competition with 3C2VH4VL4 (A), 56E5VH5VL4 (B), atezolizumab (C), avelumab (D) and durvalumab (E) for PD-L1 binding.
[0040] [Figure 10] Shown are the mean tumor volume (A) and mean tumor weight (B) of transgenic mice harboring human PD-L1 in the groups treated with 56E5VH5VL4, 3C2VH6VL5 and avelumab, respectively. DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
[0041] In order to ensure that this disclosure may be more readily understood, certain terms are first defined. Additional definitions are set forth throughout the detailed description.
[0042] The term "PD-L1" refers to programmed cell death ligand 1. The term "PD-L1" includes variants, isoforms, homologs, orthologs, and paralogs. For example, an antibody specific for the human PD-L1 protein may in some cases cross-react with PD-L1 protein from species other than human, such as monkey. In other embodiments, an antibody specific for the human PD-L1 protein may be completely specific for the human PD-L1 protein and may not exhibit other species or other types of cross-reactivity, or may cross-react with PD-L1 from certain but not all other species.
[0043] The term "human PD-L1" refers to a PD-L1 protein having an amino acid sequence derived from a human, such as the amino acid sequence set forth in SEQ ID NO: 35, or having GenBank Accession No. AAI13735.1 (Strausberg RLet al., (2002) Proc. Natl. Acad. Sci. USA 99(26):16899-16903). The term "monkey PD-L1" refers to a PD-L1 protein having an amino acid sequence derived from a monkey, such as the amino acid sequence set forth in SEQ ID NO: 36, or having NCBI Accession No. XP_005581836.1. The term "mouse PD-L1" refers to a PD-L1 protein having an amino acid sequence derived from a mouse, such as the amino acid sequence set forth in SEQ ID NO: 37, or having GenBank Accession No. AAH66841.1 (Strausberg RLet al., (2002) supra).
[0044] The term "antibody" as referred to herein includes whole antibodies, e.g., IgG, IgA, IgD, IgE and IgM, and any antigen-binding fragment (i.e., "antigen-binding portion") or single chain thereof. Whole antibodies are glycoproteins comprising at least two heavy (H) chains and two light (L) chains interconnected by disulfide bonds. Each heavy chain comprises a heavy chain variable region (referred to herein as V H The heavy chain constant region is composed of three domains: H1 , C H2 , and C H3 Each light chain is composed of a light chain variable region (referred to herein as V L The light chain constant region consists of one domain, C L It consists of V H and V L The regions can be further subdivided into regions of hypervariability, called complementarity determining regions (CDRs), which are interspersed between more conserved regions, called framework regions (FRs). H and V Lis composed of three CDRs and four FRs, arranged in the following order from the amino terminus to the carboxy terminus: FR1, CDR1, FR2, CDR2, FR3, CDR3, FR4. The variable regions of the heavy and light chains contain binding domains that interact with antigens. The constant region of the antibody can mediate the binding of the immunoglobulin to host tissues or factors, including various cells of the immune system (e.g., effector cells) and the first component (C1q) of the classical complement system.
[0045] As used herein, the term "antigen-binding portion" of an antibody (or simply "antibody portion") refers to one or more fragments of an antibody that retain the ability to specifically bind to an antigen (e.g., PD-L1 protein). It has been shown that the antigen-binding function of an antibody can be performed by fragments of a full-length antibody. Examples of binding fragments encompassed by the term "antigen-binding portion" of an antibody include: (i) V L , V H , C L and C H1 (ii) a F(ab')2 fragment, which is a bivalent fragment containing two Fab fragments linked by a disulfide bridge at the hinge region; (iii) a V H and C H1 (iv) a Fd fragment consisting of the V domain of a single arm of an antibody; L and V H (v) an Fv fragment consisting of a V H (vi) isolated complementarity determining regions (CDRs); and (viii) nanobodies, which are heavy chain variable regions containing a single variable domain and two constant domains. In addition, the two domains of the Fv fragment, the V L and V H are encoded by separate genes, which can be synthesized using recombinant methods. L and V HThe regions can be linked by synthetic linkers that allow them to be made into a single protein chain (known as single chain Fv (scFv)) that pairs to form a monovalent molecule (see, e.g., Bird et al., (1988) Science 242:423-426; and Huston et al., (1988) Proc. Natl. Acad. Sci. USA 85:5879-5883). Such single chain antibodies are also intended to be encompassed within the term "antigen-binding portion" of an antibody. These antibody fragments are obtained using conventional techniques known to those of skill in the art, and the fragments are screened for utility in the same manner as intact antibodies.
[0046] As used herein, an "isolated antibody" is intended to refer to an antibody that is substantially free of other antibodies having different antigenic specificity (e.g., an isolated antibody that specifically binds to PD-L1 protein is substantially free of antibodies that specifically bind to antigens other than PD-L1 protein). However, an isolated antibody that specifically binds to human PD-L1 protein may have cross-reactivity to other antigens, such as PD-L1 proteins from other species. Moreover, an isolated antibody may be substantially free of other cellular material and / or chemicals.
[0047] As used herein, the term "monoclonal antibody" refers to a population of substantially homogeneous antibodies, i.e., the individual antibodies constituting the population are identical except for naturally occurring mutations and / or post-translational modifications (e.g., isomerization, amidation) that may be present in minor amounts. Monoclonal antibodies are highly specific and directed against a single antigenic site. In contrast to polyclonal antibody preparations, which typically contain different antibodies directed against different determinants (epitopes), a monoclonal antibody is directed against a single determinant on an antigen.
[0048] As used herein, the term "murine antibody" is intended to include antibodies having variable regions in which both the framework and CDR regions are derived from mouse germline immunoglobulin sequences. Furthermore, if the antibody contains a constant region, the constant region is also derived from mouse germline immunoglobulin sequences. The murine antibodies of the present disclosure may include amino acid residues not encoded by mouse germline immunoglobulin sequences (e.g., mutations introduced by random or site-specific mutagenesis in vitro or by somatic mutation in vivo). However, as used herein, the term "murine antibody" is not intended to include antibodies in which CDR sequences derived from the germline of another mammalian species have been grafted onto murine framework sequences.
[0049] The term "chimeric antibody" refers to an antibody made by combining genetic material from a non-human source with human genetic material, or more generally, a chimeric antibody is an antibody that has genetic material from one species with genetic material from another species.
[0050] As used herein, the term "humanized antibody" refers to antibodies of non-human species in which the protein sequence has been altered to increase similarity to antibody variants naturally produced in humans.
[0051] The phrases "an antibody that recognizes an antigen" and "an antibody specific for an antigen" are used interchangeably herein with the term "an antibody that specifically binds to an antigen."
[0052] As used herein, an antibody that "specifically binds to human PD-L1" is intended to refer to an antibody that binds to human PD-L1 protein (and, optionally, PD-L1 proteins from one or more non-human species), but does not substantially bind to non-PD-L1 proteins. Preferably, the antibody has a "high affinity," i.e., a specific binding affinity of greater than or equal to 5.0 x 10 -8 M or less, more preferably 1.0×10 -9 M or less K DIt binds to the human PD-L1 protein.
[0053] As used herein, the term "does not substantially bind" to a protein or cell means that the antibody does not bind to the protein or cell or does not bind with high affinity, i.e., less than 1.0×10 -6 M or greater, more preferably 1.0×10 -5 M or greater, more preferably 1.0×10 -4 M or greater, more preferably 1.0×10 -3 M or greater, even more preferably 1.0×10 -2 M or K greater than D This means that the molecule binds to a protein or cell via the agonist.
[0054] The term "high affinity" for an IgG antibody refers to an affinity of 1.0 × 10 for the target antigen. -6 M or less, more preferably 5.0×10 -8 M or less, and even more preferably 1.0×10 -8 M or less, and even more preferably 5.0×10 -9 M or less, and even more preferably 1.0×10 -9 M or less K D However, "high affinity" binding may vary for other antibody isotypes. For example, "high affinity" binding for an IgM isotype is defined as 10 -6 M or less, more preferably 10 -7 M or less, even more preferably 10 -8 M or less K D It refers to an antibody having the following structure:
[0055] As used herein, "K assoc " or "K a " is intended to refer to the association rate of a particular antibody-antigen interaction, and as used herein, "K dis " or "K dAs used herein, the term "K" is intended to refer to the off-rate of a particular antibody-antigen interaction. D The term "K a K for d (i.e., K d / K a ) and expressed as a molar concentration (M). D Values can be determined using methods well established in the art. D A preferred method for determining is by using surface plasmon resonance, preferably using a biosensor system such as a Biacore™ system.
[0056] The median effective concentration (EC 50 The term "antibody concentration" refers to the concentration of antibody that induces a response halfway between baseline and the maximum after a specified exposure time.
[0057] The terms "antibody-dependent cellular cytotoxicity," "antibody-dependent cell-mediated cytotoxicity," or "ADCC" refer to a cell-mediated immune defense mechanism in which effector cells of the immune system actively lyse antibody-bound target cells.
[0058] The term "subject" includes any human or non-human animal. The term "non-human animal" includes all vertebrates, e.g., mammals and non-mammals, such as non-human primates, sheep, dogs, cats, cows, horses, chickens, amphibians, and reptiles, with mammals such as non-human primates, sheep, dogs, cats, cows, and horses being preferred.
[0059] The terms "antagonist PD-L1 antibody" or "antagonist anti-PD-L1 antibody" refer to an anti-PD-L1 antibody that binds to PD-L1 and blocks PD-L1 signaling induced by the interaction of PD-L1 with its ligand, e.g., PD-1. Antagonist anti-PD-L1 antibodies can enhance immunity by promoting T cell activation and cytokine release, and can therefore be used, for example, to treat cancer and chronic infections.
[0060] The term "therapeutically effective amount" refers to an amount of an antibody, or antigen-binding portion thereof, of the present disclosure sufficient to prevent or ameliorate symptoms associated with a disease or condition (e.g., cancer) and / or reduce the severity of the disease or condition. A therapeutically effective amount will be understood to be in the context of the condition being treated, and the actual effective amount will be readily recognized by one of ordinary skill in the art.
[0061] Various aspects of the disclosure are described in further detail in the following subsections.
[0062] Exemplary antibodies, or antigen-binding portions thereof, of the present disclosure specifically bind to human and monkey PD-L1 proteins with high binding affinity that is similar to or greater than that of prior art anti-PD-L1 antibodies, such as atezolizumab. The antibodies, or antigen-binding portions thereof, of the present disclosure can block PD-L1-PD-1 binding or interaction, with blocking activity comparable to that of prior art anti-PD-L1 antibodies, such as atezolizumab.
[0063] More importantly, the antibodies, or antigen-binding portions thereof, of the present disclosure have comparable, if not greater, ability to activate T cells and in vivo anti-tumor activity compared to prior art anti-PD-L1 antibodies, such as atezolizumab.
[0064] Preferred antibodies, or antigen-binding portions thereof, of the present disclosure are monoclonal. Additionally, the antibodies, or antigen-binding portions thereof, can be, for example, murine, chimeric, or humanized.
[0065] Exemplary antibodies or antigen-binding portions thereof of the disclosure are structurally and chemically characterized below, and the SEQ ID NOs for their heavy and light chain variable regions and CDRs are summarized in Table 1, with some antibodies or antigen-binding portions thereof sharing the same heavy / light chain variable regions.
[0066] The heavy and light chain variable region CDRs in Table 1 were defined according to the Kabat numbering system, however, as is well known in the art, the CDR regions can also be determined based on the heavy / light chain variable region sequences according to other systems, such as the Chothia, IMGT, AbM, or Contact numbering systems / methods.
[0067] The antibodies of the disclosure can each comprise a heavy chain constant region, e.g., an IgG1 constant region, e.g., a human IgG1 constant region having the amino acid sequence of SEQ ID NO: 33, or a functional fragment thereof. The antibodies of the disclosure can each comprise a light chain constant region, e.g., a kappa light chain constant region, e.g., a human kappa constant region having the amino acid sequence of SEQ ID NO: 34, or a functional fragment thereof.
[0068] V of other anti-PD-L1 antibodies that bind to human PD-L1 H and V L The V sequence (or CDR sequence) of the anti-PD-L1 antibodies of the disclosure H and V L Preferably, the V H and V L When chains (or CDRs within such chains) are mixed and paired, a particular V H / V L V from a pair H The sequence is structurally similar to V H Similarly, preferably, a particular V H / V L V from a pair L The sequence is structurally similar to V L It is replaced by an array.
[0069] Thus, in one embodiment, an antibody, or antigen-binding portion thereof, of the disclosure comprises: (a) a heavy chain variable region having an amino acid sequence listed above in Table 1; and (b) a light chain variable region having an amino acid sequence listed above in Table 1, or the V of another anti-PD-L1 antibody. L and wherein the antibody specifically binds to human PD-L1. Table 1. Amino acid sequence numbers of heavy / light chain variable regions and CDRs [Table 1]
[0070] In another embodiment, an antibody, or antigen-binding portion thereof, of the present disclosure comprises: (a) the CDR1, CDR2, and CDR3 regions of the heavy chain variable region listed above in Table 1; and (b) the CDR1, CDR2, and CDR3 regions of a light chain variable region listed above, or the CDRs of another anti-PD-L1 antibody in Table 1. and wherein the antibody specifically binds to human PD-L1.
[0071] In yet another embodiment, the antibody, or antigen-binding portion thereof, comprises the CDRs of another antibody that binds human PD-L1, e.g., the heavy chain variable CDR2 region of an anti-PD-L1 antibody combined with CDR1 and / or CDR3 from the heavy chain variable region, and / or CDR1, CDR2, and / or CDR3 from the light chain variable region of a different anti-PD-L1 antibody.
[0072] In addition, it is well known in the art that the CDR3 domain alone, independent of the CDR1 and / or CDR2 domains, can determine the binding specificity of an antibody to a cognate antigen, and that multiple antibodies with the same binding specificity can be predictively generated based on a common CDR3 sequence. For example, Klimka et al.,British J.of Cancer 83(2):252-260(2000);Beiboer et al.,J.Mol.Biol.296:833-849(2000);Rader et al.,Proc.Natl.Acad.Sci.USA95:8910-8915(1998);Barbas et al. al.,J.Am.Chem.Soc.116:2161-2162(1994);Barbas et al.,Proc.Natl.Acad.Sci.USA92:2529-2533(1995);Ditzel et al.,J.Immunol.157:739-749(1996);Berezov et al.,BIAjournal 8:Scientific Review 8(2001);Igarashi et al. See, e.g., Bourgeois et al., J. Virol 72:807-10 (1998); Levi et al., Proc. Natl. Acad. Sci. USA 90:4374-8 (1993); Polymenis and Stoller, J. Immunol. 152:5218-5329 (1994), and Xu and Davis, Immunity 13:37-45 (2000). See also U.S. Patent Nos. 6,951,646; 6,914,128; 6,090,382; 6,818,216; 6,156,313; 6,827,925; 5,833,943; 5,762,905; and 5,760,185. Each of these references is incorporated herein by reference in its entirety.
[0073] Thus, in another embodiment, an antibody or antigen-binding portion thereof of the present disclosure comprises the CDR2 of the heavy chain variable region of an anti-PD-L1 antibody and at least the CDR3 of the heavy and / or light chain variable region of an anti-PD-L1 antibody, or the CDR3 of the heavy and / or light chain variable region of another anti-PD-L1 antibody, and the antibody or antigen-binding portion thereof is capable of specifically binding to human PD-L1. These antibodies or antigen-binding portions thereof preferably (a) compete with PD-L1 for binding; (b) retain the functional characteristics; (c) bind to the same epitope; and / or (d) have similar binding affinity as the anti-PD-L1 antibodies of the present disclosure. In yet another embodiment, the antibody or antigen-binding portion thereof may further comprise the CDR2 of the light chain variable region of an anti-PD-L1 antibody, or the CDR2 of the light chain variable region of another anti-PD-L1 antibody, and the antibody or antigen-binding portion thereof is capable of specifically binding to human PD-L1. In another embodiment, an antibody, or antigen-binding portion thereof, of the disclosure may comprise the CDR1 of the heavy and / or light chain variable region of an anti-PD-L1 antibody, or the CDR1 of the heavy and / or light chain variable region of another anti-PD-L1 antibody, and the antibody, or antigen-binding portion thereof, is capable of specifically binding to human PD-L1.
[0074] In another embodiment, an antibody, or antigen-binding portion thereof, of the disclosure comprises heavy and / or light chain variable region sequences of CDR1, CDR2 and CDR3 sequences that differ from those of an anti-PD-L1 antibody, or antigen-binding portion thereof, of the disclosure by one or more conservative modifications. It is understood in the art that certain conservative sequence modifications can be made that do not eliminate antigen binding. See, e.g., Brummell et al., (1993) Biochem 32:1180-8; de Wildt et al., (1997) Prot. Eng. 10:835-41; Komissarov et al., (1997) J. Biol. Chem. 272:26864-26870; Hall et al., (1992) J. Immunol. 149:1605-12; Kelley and O'Connell (1993) Biochem. 32:6862-35; Adib-Conquy et al., (1998) Int. Immunol. 10:341-6 and Beers et al., (2000) Clin. Can. Res. 6:2835-43.
[0075] Thus, in one embodiment, an antibody, or antigen-binding portion thereof, comprises a heavy chain variable region having CDR1, CDR2, and CDR3 sequences, and / or a light chain variable region having CDR1, CDR2, and CDR3 sequences, (a) the heavy chain variable region CDR1 sequence comprises a sequence listed in Table 1 above, and / or a conservative modification thereof; and / or (b) the heavy chain variable region CDR2 sequence comprises a sequence listed in Table 1 above, and / or a conservative modification thereof; and / or (c) the heavy chain variable region CDR3 sequence comprises a sequence listed in Table 1 above, and conservative modifications thereof; and / or (d) the light chain variable region CDR1, and / or CDR2, and / or CDR3 sequences comprise the sequences listed in Table 1 above; and / or conservative modifications thereof; and (e) The antibody specifically binds to human PD-L1.
[0076] The antibodies, or antigen-binding portions thereof, of the disclosure have one or more of the functional properties described above, such as high affinity binding to human PD-L1 and reduced or eliminated ability to induce antibody-dependent cell-mediated cytotoxicity (ADCC) against PD-L1 positive cells.
[0077] In various embodiments, the antibodies, or antigen-binding portions thereof, of the disclosure can be, for example, murine, chimeric, human, or humanized.
[0078] As used herein, the term "conservative sequence modifications" is intended to refer to amino acid modifications that do not significantly affect or alter the binding characteristics of the antibody containing the amino acid sequence. Such conservative modifications include amino acid substitutions, additions, and deletions. Modifications can be introduced into the antibodies of the present disclosure by standard techniques known in the art, such as site-directed mutagenesis and PCR-mediated mutagenesis. A conservative amino acid substitution is one in which an amino acid residue is replaced with an amino acid residue having a similar side chain. Families of amino acid residues having similar side chains have been defined in the art. These families include amino acids with basic side chains (e.g., lysine, arginine, histidine), acidic side chains (e.g., aspartic acid, glutamic acid), polar uncharged side chains (e.g., glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine, tryptophan), nonpolar side chains (e.g., alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine), beta-branched side chains (e.g., threonine, valine, isoleucine), and aromatic side chains (e.g., tyrosine, phenylalanine, tryptophan, histidine). Thus, one or more amino acid residues in the CDR regions of an antibody of the present disclosure can be replaced with another amino acid residue from the same side chain family, and the altered antibodies can be tested for retained function (i.e., the functions described above) using the functional assays described herein.
[0079] The antibodies of the disclosure may be any of the anti-PD-L1 antibodies of the disclosure. H / V LAn antibody having one or more of the sequences can be prepared using the starting material for engineering an engineered antibody. The antibody can have one or both variable regions (i.e., V H and / or V L ), for example by modifying one or more residues in one or more CDR regions and / or in one or more framework regions. Additionally or alternatively, an antibody may be engineered by modifying residues within the constant region(s), for example to alter the effector functions of the antibody.
[0080] In certain embodiments, CDR grafting can be used to engineer the variable region of an antibody. Antibodies interact with target antigens primarily through amino acid residues located in the six heavy and light chain complementarity determining regions (CDRs). For this reason, amino acid sequences within the CDRs are more diverse between individual antibodies than sequences outside the CDRs. Because the CDR sequences are responsible for most antibody-antigen interactions, it is possible to express recombinant antibodies that mimic the properties of a particular naturally occurring antibody by constructing expression vectors that contain CDR sequences from a particular naturally occurring antibody grafted onto framework sequences from a different antibody with different properties (see, e.g., Riechmann et al., (1998) Nature 332:323-327; Jones et al., (1986) Nature 321:522-525; Queen et al., (1989) Proc. Natl. Acad. USA 86:10029-10033; U.S. Patent Nos. 5,225,539; 5,530,101; 5,585,089; 5,693,762 and 6,180,370).
[0081] Accordingly, another embodiment of the present disclosure relates to isolated monoclonal antibodies or antigen-binding portions thereof comprising a heavy chain variable region having CDR1, CDR2, and CDR3 sequences comprising the sequences of the present disclosure set forth above, and / or a light chain variable region having CDR1, CDR2, and CDR3 sequences comprising the sequences of the present disclosure set forth above. These antibodies include the V of the monoclonal antibodies of the present disclosure.H and V L It contains the CDR sequences but may contain different framework sequences.
[0082] Such framework sequences can be obtained from public DNA databases or published references that contain germline antibody gene sequences. For example, germline DNA sequences of human heavy and light chain variable region genes can be found in the "VBase" human germline sequence database (available on the Internet at www.mrc-cpe.cam.ac.uk / vbase), as well as Kabat et al., (1991); Tomlinson et al., (1992) J. Mol. Biol. 227:776-798; and Cox et al., (1994) Eur. J. Immunol. 24:827-836, supra; the contents of each of which are expressly incorporated herein by reference. As another example, germline DNA sequences of human heavy and light chain variable region genes can be found in the Genbank database. For example, the following heavy chain germline sequences found in the HCo7 HuMAb mouse are available at attached Genbank accession numbers 1-69 (NG--0010109, NT--024637&BC070333), 3-33 (NG--0010109&NT--024637) and 3-7 (NG--0010109&NT--024637). As another example, the following heavy chain germline sequences found in HCo12 HuMAb mice are available at attached Genbank accession numbers 1-69 (NG--0010109, NT--024637 & BC070333), 5-51 (NG--0010109 & NT--024637), 4-34 (NG--0010109 & NT--024637), 3-30.3 (CAJ556644) & 3-23 (AJ406678).
[0083] The antibody protein sequence is compared to compiled protein sequence databases using one of the sequence similarity search methods known to those of skill in the art as Gapped BLAST (Altschul et al., (1997) supra).
[0084] Preferred framework sequences used in the antibodies of this disclosure are of similar structure to the framework sequences used by the antibodies of this disclosure. H The CDR1, CDR2, and CDR3 sequences can be grafted into framework regions having the same sequences as those found in germline immunoglobulin genes (the framework sequences are derived from germline immunoglobulin genes), or the CDR sequences can be grafted into framework regions that contain one or more mutations compared to the germline sequences. For example, in certain cases, it has been found to be beneficial to mutate residues in the framework regions to maintain or enhance the antigen-binding ability of the antibody (see, e.g., U.S. Patent Nos. 5,530,101; 5,585,089; 5,693,762 and 6,180,370).
[0085] Another type of variable region modification is H and / or V L The amino acid residues in the CDR1, CDR2, and / or CDR3 regions are mutated to thereby improve one or more binding properties (e.g., affinity) of the antibody of interest. Site-directed mutagenesis or PCR-mediated mutagenesis can be performed to introduce the mutations, and the effect on antibody binding or other functional properties of interest can be evaluated in in vitro or in vivo assays, as known in the art. Preferably, conservative modifications (known in the art) are introduced. The mutations can be amino acid substitutions, additions, or deletions, but are preferably substitutions. Furthermore, typically no more than 1, 2, 3, 4, or 5 residues in the CDR regions are altered.
[0086] Thus, in another embodiment, the disclosure provides a method for the preparation of a polypeptide comprising: (a) a V polypeptide comprising a sequence of the disclosure or an amino acid sequence having one, two, three, four or five amino acid substitutions, deletions or additions; H (b) a V region comprising an amino acid sequence of the disclosure or having one, two, three, four or five amino acid substitutions, deletions or additions; H(c) a V sequence comprising an amino acid sequence of the present disclosure or having one, two, three, four or five amino acid substitutions, deletions or additions; H (d) a V sequence comprising an amino acid sequence of the present disclosure or having one, two, three, four or five amino acid substitutions, deletions or additions; L (e) a V region comprising an amino acid sequence of the disclosure or having one, two, three, four or five amino acid substitutions, deletions or additions; L and (f) a V sequence comprising an amino acid sequence of the disclosure or having one, two, three, four or five amino acid substitutions, deletions or additions. L Provided is an isolated anti-PD-L1 monoclonal antibody, or an antigen-binding portion thereof, comprising a heavy chain variable region having a CDR3 region.
[0087] Engineered antibodies of the disclosure can include, for example, modifications to the V H and / or V L Framework modifications include those in which modifications have been made to framework residues within the framework sequence. Typically, such framework modifications are made to reduce the immunogenicity of the antibody. For example, one approach is to "backmutate" one or more framework residues to the corresponding germline sequence. More specifically, antibodies that have undergone somatic mutations may contain framework residues that differ from the germline sequence from which the antibody is derived. Such residues can be identified by comparing the antibody framework sequence to the germline sequence from which the antibody is derived.
[0088] Another type of framework modification involves mutating one or more residues within the framework regions or even within one or more CDR regions to remove T cell epitopes, thereby reducing the potential immunogenicity of the antibody. This approach is also referred to as "deimmunization" and is described in further detail in U.S. Patent Publication No. 20030153043.
[0089] In addition to, or instead of, modifications made in the framework or CDR regions, the antibodies of the disclosure may be engineered to contain modifications in the Fc region, typically to alter one or more functional properties of the antibody, such as serum half-life, complement fixation, Fc receptor binding, and / or antigen-dependent cellular cytotoxicity. Further, the antibodies of the disclosure may be chemically modified (e.g., one or more chemical moieties may be attached to the antibody) or modified to alter its glycosylation, which also alters one or more functional properties of the antibody.
[0090] In one embodiment, C H1 The hinge region of is modified such that the number of cysteine residues in the hinge region is altered, e.g., increased or decreased. This approach is further described in U.S. Pat. No. 5,677,425. H1 The number of cysteine residues in the hinge region of the antibody is altered to, for example, facilitate assembly of the light and heavy chains or to increase or decrease the stability of the antibody.
[0091] In another embodiment, the Fc hinge region of the antibody is mutated to decrease the biological half-life of the antibody. More specifically, one or more amino acid mutations are made in the C of the Fc hinge fragment such that the antibody has weaker Staphylococcus protein A (SpA) binding compared to the SpA binding of the native Fc hinge domain. H2 -C H3 The domain boundary region is introduced. This approach is described in further detail in U.S. Patent No. 6,165,745.
[0092] In yet another embodiment, the glycosylation of the antibody is modified. For example, a glycosylated antibody can be made (i.e., the antibody has no glycosylation). The glycosylation can be altered, for example, to increase the affinity of the antibody for the antigen. Such carbohydrate modifications can be accomplished, for example, by altering one or more sites of glycosylation within the antibody sequence. For example, one or more amino acid substitutions can be made that result in the elimination of one or more variable region framework glycosylation sites, thereby eliminating glycosylation at those sites. Such aglycosylation can increase the affinity of the antibody for the antigen. See, for example, U.S. Patent Nos. 5,714,350 and 6,350,861.
[0093] Additionally or alternatively, antibodies can be made with altered glycosylation types, such as hypofucosylated antibodies with reduced amounts of fucosyl residues or antibodies with increased bisecting GlcNac structures. Such altered glycosylation patterns have been demonstrated to increase the ADCC ability of antibodies. Such carbohydrate modifications can be achieved, for example, by expressing the antibody in a host cell with altered glycosylation machinery. Cells with altered glycosylation machinery have been described in the art and can be used as host cells for expressing recombinant antibodies of the present disclosure, thereby producing antibodies with altered glycosylation. For example, cell lines Ms704, Ms705, and Ms709 lack the fucosyltransferase gene FUT8 (α(1,6)-fucosyltransferase), such that antibodies expressed in the Ms704, Ms705, and Ms709 cell lines do not have fucose in their carbohydrates. The Ms704, Ms705, and Ms709 FUT8- / - cell lines were generated by targeted disruption of the FUT8 gene in CHO / DG44 cells using two replacement vectors (see U.S. Patent Publication No. 20040110704 and Yamane-Ohnuki et al., (2004) Biotechnol Bioeng 87:614-22). As another example, EP 1,176,195 describes cell lines in which the FUT8 gene encoding fucosyltransferase is functionally disrupted, such that antibodies expressed in such cell lines exhibit hypofucosylation by reducing or eliminating α-1,6 bond-related enzymes. EP 1,176,195 also describes cell lines that have reduced or no enzymatic activity for adding fucose to N-acetylglucosamine attached to the Fc region of an antibody, such as the rat myeloma cell line YB2 / 0 (ATCC CRL 1662). PCT Publication WO 03 / 035835 describes a variant CHO cell line, Lec13 cells, that has a reduced ability to attach fucose to Asn(297)-linked carbohydrate, which also results in hypofucosylation of antibodies expressed in the host cells (see also Shields et al., (2002) J. Biol. Chem. 277:26733-26740).Antibodies with modified glycosylation profiles can also be produced in chicken eggs, as described in PCT Publication No. WO06 / 089231. Alternatively, antibodies with modified glycosylation profiles can be produced in plant cells, such as duckweed. PCT Publication No. WO99 / 54342 describes cell lines engineered to express glycoprotein-modifying glycosyltransferases (e.g., β(1,4)-N-acetylglucosaminyltransferase III (GnTIII)), such that antibodies expressed in the engineered cell lines exhibit increased bisecting GlcNac structures, resulting in increased ADCC activity of the antibodies (see also Umana et al., (1999) Nat. Biotech. 17:176-180). Alternatively, the fucose residues of the antibody can be cleaved off using a fucosidase enzyme; for example, the fucosidase α-L-fucosidase removes fucosyl residues from antibodies (Tarentino et al., (1975) Biochem. 14:5516-23).
[0094] Another modification of the antibodies herein contemplated by the present disclosure is PEGylation. Antibodies may be PEGylated, for example, to increase the biological (e.g., blood) half-life of the antibody. To PEGylate an antibody, the antibody or fragment thereof is typically reacted with polyethylene glycol (PEG), such as a reactive ester or aldehyde derivative of PEG, under conditions such that one or more PEG groups become attached to the antibody or antibody fragment. Preferably, PEGylation is carried out via an acylation reaction or an alkylation reaction with a reactive PEG molecule (or an analogous reactive water-soluble polymer). As used herein, the term "polyethylene glycol" refers to a mono (C1-C 10It is intended to encompass any form of PEG used to derivatize other proteins, such as alkoxy or aryloxy-polyethylene glycol or polyethylene glycol-maleimide. In certain embodiments, the antibody to be PEGylated is an aglycosylated antibody. Methods for PEGylating proteins are known in the art and can be applied to the antibodies of the present disclosure. See, e.g., EPO154316 and EP0401384.
[0095] The antibodies of the present disclosure can be characterized by various physical properties in order to detect and / or distinguish their different classes.
[0096] For example, an antibody may contain one or more glycosylation sites in either the light or heavy chain variable region. Such glycosylation sites may result in increased immunogenicity of the antibody or alteration of the antibody's pK due to altered antigen binding (Marshall et al (1972) Annu Rev Biochem 41:673-702; Gala and Morrison (2004) J Immunol 172:5489-94; Wallick et al (1988) J Exp Med 168:1099-109; Spiro (2002) Glycobiology 12:43R-56R; Parekh et al (1985) Nature 316:452-7; Mimura et al., (2000) Mol Immunol 37:697-706). Glycosylation is known to occur at motifs containing NXS / T sequences. In some cases, it may be preferable to have an anti-PD-L1 antibody that does not contain variable region glycosylation. This can be achieved either by selecting an antibody that does not contain glycosylation motifs in the variable region or by mutating residues within the glycosylated region.
[0097] In a preferred embodiment, the antibody does not contain an asparagine isomerism site. Deamidation of asparagine can occur at NG or DG sequences and result in the generation of isoaspartic acid residues that introduce a kink into the polypeptide chain, decreasing its stability (isoaspartic acid effect).
[0098] Each antibody has a unique isoelectric point (pI) that generally falls in the pH range of 6 to 9.5. The pI of an IgG1 antibody typically falls in the pH range of 7 to 9.5, and the pI of an IgG4 antibody typically falls in the pH range of 6 to 8. It is believed that antibodies with a pI outside the normal range may have some unfolding and instability under in vivo conditions. It is therefore preferable to have an anti-PD-L1 antibody that contains a pI value that falls in the normal range. This can be achieved either by selecting an antibody with a pI in the normal range or by mutating charged surface residues.
[0099] In another aspect, the present disclosure provides a nucleic acid molecule encoding the heavy and / or light chain variable region or CDR of the antibody of the present disclosure. The nucleic acid may be present in a whole cell, in a cell lysate, or in a partially purified or substantially pure form. A nucleic acid is "isolated" or "substantially pure" when it has been purified from other cellular components or other contaminants, e.g., other cellular nucleic acids or proteins, by standard techniques. The nucleic acid of the present disclosure may be, for example, DNA or RNA, and may or may not contain intronic sequences. In a preferred embodiment, the nucleic acid is a cDNA molecule.
[0100] Nucleic acids of the present disclosure can be obtained using standard molecular biology techniques. For antibodies expressed by hybridomas (e.g., hybridomas prepared from transgenic mice carrying human immunoglobulin genes, as further described below), cDNAs encoding the light and heavy chains of the antibodies made by the hybridomas can be obtained by standard PCR amplification or cDNA cloning techniques. For antibodies obtained from an immunoglobulin gene library (e.g., using phage display techniques), nucleic acids encoding such antibodies can be retrieved from the gene library.
[0101] A preferred nucleic acid molecule of the present disclosure is the V H and V L V H and V L Once DNA fragments encoding the segments have been obtained, these DNA fragments can be further manipulated by standard recombinant DNA techniques, for example to convert the variable region genes into full-length antibody chain genes, Fab fragment genes, or scFv genes. L Or V H A DNA fragment encoding the is operably linked to another DNA fragment encoding another protein, such as an antibody constant region or a flexible linker. As used in this context, the term "operably linked" is intended to mean that the two DNA fragments are joined such that the amino acid sequences encoded by the two DNA fragments remain in frame.
[0102] V H The isolated DNA encoding the region was H The DNA encoding the heavy chain constant region (C H1 , C H2 , and C H3The heavy chain constant region may be converted to a full-length heavy chain gene by operably linking to another DNA molecule encoding a human heavy chain constant region gene. Sequences of human heavy chain constant region genes are known in the art, and DNA fragments encompassing these regions can be obtained by standard PCR amplification. The heavy chain constant region can be an IgG1, IgG2, IgG3, IgG4, IgA, IgE, IgM, or IgD constant region, but is most preferably an IgG1 or IgG4 constant region. For a Fab fragment heavy chain gene, the V H The DNA encoding the heavy chain C H1 It may be operably linked to another DNA molecule encoding only the constant region.
[0103] V L The isolated DNA encoding the region was L The DNA encoding the light chain constant region C L The light chain constant region may be converted to a full-length light chain gene (as well as a Fab light chain gene) by operably linking it to another DNA molecule encoding the light chain constant region. The sequences of human light chain constant region genes are known in the art, and DNA fragments encompassing these regions can be obtained by standard PCR amplification. In a preferred embodiment, the light chain constant region may be a kappa or lambda constant region.
[0104] To generate the scFv gene, H and V L The DNA fragment encoding the V is operably linked to another fragment encoding a flexible linker, e.g., encoding the amino acid sequence (Gly-Ser), such that V H and V L The sequence is V L and V H The regions can be expressed as a contiguous single-chain protein joined by a flexible linker (see, e.g., Bird et al., (1988) Science 242:423-426; Huston et al., (1988) Proc. Natl. Acad. Sci. USA 85:5879-5883; McCafferty et al., (1990) Nature 348:552-554).
[0105] The monoclonal antibodies (mAbs) of the present disclosure may be produced using the well-known somatic cell hybridization (hybridoma) technique of Kohler and Milstein (1975) Nature 256:495. Other embodiments for producing monoclonal antibodies include viral or oncogenic transformation of B lymphocytes and phage display techniques. Chimeric or humanized antibodies are also well known in the art. See, for example, U.S. Patent Nos. 4,816,567; 5,225,539; 5,530,101; 5,585,089; 5,693,762, and 6,180,370, the contents of which are specifically incorporated herein by reference in their entirety.
[0106] Antibodies of the disclosure can also be produced in host cell transfectomas, for example, using a combination of recombinant DNA technology and gene transfection methods, as are well known in the art (e.g., Morrison, S. (1985) Science 229:1202). In one embodiment, DNA encoding partial or full-length light and heavy chains, obtained by standard molecular biology techniques, is inserted into one or more expression vectors such that the genes are operably linked to transcriptional and translational control sequences. In this context, the term "operably linked" is intended to mean that the antibody gene is ligated into a vector such that transcriptional and translational control sequences within the vector serve their intended function of controlling the transcription and translation of the antibody gene.
[0107] The term "control sequence" is intended to include promoters, enhancers, and other expression control elements (e.g., polyadenylation signals) that control the transcription or translation of antibody genes. Such control sequences are described, for example, in Goeddel (Gene Expression Technology. Methods in Enzymology 185, Academic Press, San Diego, Calif. (1990)). Preferred control sequences for mammalian host cell expression include viral elements that direct high levels of protein expression in mammalian cells, such as promoters and / or enhancers derived from cytomegalovirus (CMV), simian virus 40 (SV40), adenovirus, e.g., adenovirus major late promoter (AdMLP) and polyoma. Alternatively, non-viral control sequences can be used, such as the ubiquitin promoter or the beta-globin promoter. Furthermore, control elements composed of sequences from different sources, such as the SRα promoter system (Takebe et al., (1988) Mol. Cell. Biol. 8:466-472), which contains sequences from the SV40 early promoter and the long terminal repeat of human T-cell leukemia virus type 1. Expression vectors and expression control sequences are selected to be compatible with the expression host cell used.
[0108] The antibody light chain gene and the antibody heavy chain gene can be inserted into the same or separate expression vectors. In a preferred embodiment, the variable regions are used to generate full-length antibody genes of any antibody isotype by inserting them into an expression vector already encoding the heavy and light chain constant regions of the desired isotype. The resulting V H The segment is located in the vector H operably connected to the V segment; L The segment is located in the vector LThe antibody chain segment is operably linked to the antibody segment. Additionally or alternatively, the recombinant expression vector can encode a signal peptide that facilitates secretion of the antibody chain from a host cell. The antibody chain gene can be cloned into the vector such that the signal peptide is linked in-frame to the amino terminus of the antibody chain gene. The signal peptide can be an immunoglobulin signal peptide or a heterologous signal peptide (i.e., a signal peptide from a non-immunoglobulin protein).
[0109] In addition to the antibody chain genes and control sequences, the recombinant expression vectors of the disclosure may carry additional sequences, such as sequences that control replication of the vector in a host cell (e.g., origins of replication) and selectable marker genes. The selectable marker gene facilitates selection of host cells into which the vector has been introduced (see, e.g., U.S. Pat. Nos. 4,399,216; 4,634,665 and 5,179,017). For example, the selectable marker gene typically confers resistance to drugs, such as G418, hygromycin or methotrexate, on the host cell into which the vector has been introduced. Preferred selectable marker genes include the dihydrofolate reductase (DHFR) gene (for use in dhfr host cells with methotrexate selection / amplification) and the neo gene (for G418 selection).
[0110] For expression of the light and heavy chains, expression vectors encoding the heavy and light chains are transfected into a host cell by standard techniques. The various forms of the term "transfection" are intended to encompass a wide variety of techniques commonly used to introduce foreign DNA into prokaryotic or eukaryotic host cells, such as electroporation, calcium phosphate precipitation, DEAE-dextran transfection, etc. Although it is theoretically possible to express the antibodies of the present disclosure in either prokaryotic or eukaryotic host cells, expression of the antibodies in eukaryotic cells, most preferably mammalian host cells, is most preferred, since such eukaryotic cells, particularly mammalian cells, are more likely than prokaryotic cells to assemble and secrete properly folded, immunoreactive antibodies.
[0111] Preferred mammalian host cells for expressing the recombinant antibodies of the disclosure include Chinese Hamster Ovary (CHO) cells (including dhfr-CHO cells described in Urlaub and Chasin, (1980) Proc. Natl. Acad. Sci. USA 77:4216-4220, used with a DHFR selection marker as described in RJ Kaufman and PA Sharp (1982) J. Mol. Biol. 159:601-621), NSO myeloma cells, COS cells and SP2 cells. Another preferred expression system, particularly for use with NSO myeloma cells, is the GS gene expression system disclosed in WO87 / 04462, WO89 / 01036 and EP338,841. When a recombinant expression vector encoding an antibody gene is introduced into a mammalian host cell, the antibody is produced by culturing the host cell for a period of time sufficient to allow for expression of the antibody in the host cell, or, more preferably, secretion of the antibody into the culture medium that the host cell is grown in. Antibody can be recovered from the culture medium using standard protein purification methods.
[0112] The antibody or antigen-binding portion thereof of the present disclosure may be conjugated to a therapeutic agent to form an immunoconjugate, such as an antibody-drug conjugate (ADC). Suitable therapeutic agents include cytotoxins, alkylating agents, DNA minor groove binders, DNA intercalators, DNA cross-linking agents, histone deacetylase inhibitors, nuclear transport inhibitors, proteasome inhibitors, topoisomerase I or II inhibitors, heat shock protein inhibitors, tyrosine kinase inhibitors, antibiotics, and mitotic inhibitors. In an ADC, the antibody and therapeutic agent are preferably conjugated via a cleavable linker, such as a peptidyl linker, a disulfide linker, or a hydrazone linker. More preferably, the linker is a peptidyl linker such as Val-Cit, Ala-Val, Val-Ala-Val, Lys-Lys, Ala-Asn-Val, Val-Leu-Lys, Ala-Ala-Asn, Cit-Cit, Val-Lys, Lys, Cit, Ser, or Glu. ADCs can be prepared as described in U.S. Pat. Nos. 7,087,600; 6,989,452; and 7,129,261; PCT Publication Nos. WO02 / 096910; WO07 / 038,658; WO07 / 051,081; WO07 / 059,404; WO08 / 083,312; and WO08 / 103,693; U.S. Patent Publication Nos. 20060024317; 20060004081; and 20060247295; the disclosures of which are incorporated herein by reference.
[0113] In another aspect, the disclosure features a bispecific molecule comprising an antibody of the disclosure, or an antigen-binding portion thereof, linked to at least one other functional molecule, such as another peptide or protein (e.g., another antibody or a ligand for a receptor), generating a bispecific molecule that binds to at least two different binding sites or target molecules. Thus, as used herein, "bispecific molecule" includes molecules with three or more specificities.
[0114] Bispecific molecules can come in many different formats and sizes. At one end of the size spectrum, bispecific molecules retain the traditional antibody format, except that instead of having two binding arms of the same specificity, they have two binding arms, each with a different specificity. At the other end are bispecific molecules consisting of two single-chain antibody fragments (scFv) linked by a peptide chain, the so-called Bs(scFv)2 construct. Bispecific molecules of intermediate size contain two different F(ab) fragments linked by a peptidyl linker. These and other formats of bispecific molecules can be prepared by genetic engineering, somatic cell hybridization, or chemical methods. See, for example, Kufer et al., supra; Cao and Suresh, Bioconjugate Chemistry, 9(6), 635-644 (1998); and van Spriel et al., Immunology Today, 21(8), 391-397 (2000), and references cited therein.
[0115] The present disclosure provides a chimeric antigen receptor comprising an anti-PD-L1 single chain variable fragment (scFv) having heavy and light chain variable regions and / or CDRs of the present disclosure.
[0116] The chimeric antigen receptor may comprise (a) an extracellular antigen recognition domain containing an anti-PD-L1 scFv, (b) a transmembrane domain, and (c) an intracellular signaling domain.
[0117] Oncolytic viruses preferentially infect and kill cancer cells. The antibodies or antigen-binding portions thereof of the present disclosure may be used in conjunction with oncolytic viruses. Alternatively, oncolytic viruses encoding the antibodies or antigen-binding portions thereof of the present disclosure may be introduced into the human body.
[0118] In another aspect, the present disclosure provides a pharmaceutical composition comprising an antibody or antigen-binding portion thereof, immunoconjugate, bispecific molecule, immune cell bearing a chimeric antigen receptor, oncolytic virus, nucleic acid molecule, expression vector, and / or host cell of the present disclosure formulated together with a pharma- ceutically acceptable carrier. The composition may optionally contain one or more additional pharma- ceutical active ingredients, such as an antitumor agent, an antiinfective agent, or an agent for immune enhancement. The pharmaceutical composition of the present disclosure may be administered in combination therapy, for example, with an antitumor agent, an antiinfective agent, or an agent for immune enhancement.
[0119] Pharmaceutical compositions may comprise any number of excipients. Excipients that can be used include carriers, surface active agents, thickening or emulsifying agents, solid binders, dispersing or suspending aids, solubilizers, coloring agents, flavoring agents, coatings, disintegrants, lubricants, sweeteners, preservatives, isotonicity agents, and combinations thereof. The selection and use of suitable excipients is taught in Gennaro, ed., Remington: The Science and Practice of Pharmacy, 20th Ed. (Lippincott Williams&Wilkins 2003), the disclosure of which is incorporated herein by reference.
[0120] The pharmaceutical composition is preferably suitable for intravenous, intramuscular, subcutaneous, parenteral, spinal or epidermal administration (e.g., by injection or infusion). Depending on the route of administration, the active ingredient may be coated with a material to protect it from the action of acids and other natural conditions that may inactivate it. As used herein, the phrase "parenteral administration" refers to modes of administration other than enteral and topical administration, usually by injection, and includes, but is not limited to, intravenous, intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticular, subcapsular, subarachnoid, intraspinal, epidural and intrasternal injection and infusion. Alternatively, the antibody of the present disclosure may be administered via a non-parenteral route, such as a topical, epidermal or mucosal route of administration, e.g., intranasally, orally, vaginally, rectally, sublingually or topically.
[0121] The pharmaceutical composition may be in the form of a sterile aqueous solution or dispersion.The pharmaceutical composition may also be formulated into a microemulsion, liposome, or other ordered structure suitable to high drug concentration.
[0122] The amount of active ingredient that can be combined with a carrier material to produce a single dosage form can vary depending on the subject being treated and the particular mode of administration, but will generally be that amount of the composition which produces a therapeutic effect. Generally, this amount can range from about 0.01% to about 99% of the active ingredient combined with a pharma- ceutically acceptable carrier, out of one hundred percent.
[0123] The dosage regimen is adjusted to provide the optimum desired response (e.g., therapeutic response). For example, a single bolus may be administered, or several divided doses may be administered over time, or the dose may be proportionally reduced or increased as indicated by the exigencies of the therapeutic situation. It is particularly advantageous to formulate parenteral compositions in unit dosage form for ease of administration and uniformity of dosage. As used herein, unit dosage form refers to physically discrete units suitable as unitary dosages for the subjects to be treated; each unit contains a predetermined amount of active ingredient calculated to produce the desired therapeutic effect in combination with the required pharmaceutical carrier. Alternatively, the antibody can be administered as a sustained release formulation. In this case, less frequent administration is required.
[0124] For administration of the antibodies or antigen-binding portions thereof, dosages may range from about 0.0001 to 100 mg / kg body weight. An exemplary treatment regimen involves once-weekly administration. A preferred dosing regimen for the anti-PD-L1 antibodies of the disclosure includes intravenous administration.
[0125] A "therapeutically effective dose" of an anti-PD-L1 antibody of the disclosure may preferably result in a decrease in the severity of disease symptoms, an increase in the frequency and length of disease symptom-free periods, or prevention of impaired function or disability due to disease affliction. For example, when treating a cancer-bearing subject, a "therapeutically effective dose" preferably inhibits tumor growth by at least about 20%, more preferably at least about 40%, even more preferably at least about 60%, and even more preferably at least about 80% compared to an untreated subject. A therapeutically effective amount of a therapeutic antibody may reduce tumor size or otherwise ameliorate symptoms in a subject, which may typically be a human or another mammal.
[0126] The pharmaceutical composition can be a controlled release formulation, including implants, transdermal patches, and microencapsulated delivery systems.Biodegradable and biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters, polylactic acid, etc.See, for example, Sustained and Controlled Release Drug Delivery Systems, JR Robinson, ed., Marcel Dekker, Inc., New York, 1978.
[0127] Therapeutic compositions may be administered via medical devices such as: (1) needleless hypodermic injection devices (e.g., U.S. Pat. Nos. 5,399,163; 5,383,851; 5,312,335; 5,064,413; 4,941,880; 4,790,824; and 4,596,556); (2) microinfusion pumps (U.S. Pat. No. 4,487,603); (3) transdermal devices (U.S. Pat. No. 4,486,194); (4) infusion devices (U.S. Pat. Nos. 4,447,233 and 4,447,224); and (5) osmotic devices (U.S. Pat. Nos. 4,439,196 and 4,475,196), the disclosures of which are incorporated herein by reference.
[0128] In certain embodiments, the monoclonal antibodies of the present disclosure may be formulated to ensure proper distribution in vivo. For example, to ensure that therapeutic antibodies of the present disclosure cross the blood-brain barrier, they may be formulated in liposomes that may additionally contain targeting moieties that enhance selective transport to specific cells or organs. For example, U.S. Patent Nos. 4,522,811; 5,374,548; 5,416,016; and 5,399,331; al.,(1988)Biochem.Biophys.Res.Commun.153:1038;Bloeman et al.,(1995)FEBS Lett.357:140;M.Owais et al.,(1995)Antimicrob.Agents Chemother.39:180;Briscoe et al. al.,(1995)Am.J.Physiol.1233:134;Schreier et al.,(1994)J.Biol.Chem.269:9090;Keinanen and See Laukkanen (1994) FEBS Lett. 346:123; and Killion and Fidler (1994) Immunomethods 4:273.
[0129] The pharmaceutical compositions of the present disclosure have numerous in vitro and in vivo utilities, including, for example, the treatment and / or prevention of cancer and infectious diseases. The pharmaceutical compositions of the present disclosure can be administered to human subjects to inhibit tumor growth or reduce or eliminate pathogens.
[0130] Given the ability of the anti-PD-L1 antibodies of the present disclosure to inhibit the proliferation and survival of cancer cells, the present disclosure provides a method for inhibiting the growth of tumor cells in a subject, comprising administering to the subject a pharmaceutical composition of the present disclosure, such that the growth of the tumor is inhibited in the subject. Non-limiting examples of tumors that may be treated by the antibodies of the present disclosure include, but are not limited to, primary and / or metastatic melanoma, non-small cell lung cancer, renal cell carcinoma, Hodgkin's lymphoma, bladder cancer, head and neck cancer, neuroendocrine tumors, mantle cell lymphoma, diffuse large B-cell lymphoma, and follicular lymphoma. Additionally, refractory or recurrent malignancies may be inhibited using the pharmaceutical compositions of the present disclosure.
[0131] In another aspect, since the pharmaceutical composition of the present disclosure can reduce or eliminate pathogens, the present disclosure provides a method for treating an infectious disease in a subject in need thereof, comprising administering to the subject a pharmaceutical composition of the present disclosure. The infectious disease can be caused by a viral, bacterial, fungal, or mycoplasma infection. The infectious disease can be a chronic hepatitis B virus (HBV), hepatitis C virus (HCV), human immunodeficiency virus (HIV), or simian immunodeficiency virus (SIV) infection.
[0132] In another aspect, the present disclosure provides a method of combination therapy in which the pharmaceutical composition of the present disclosure is co-administered with one or more additional antibodies or non-antibody agents effective to inhibit tumor growth in a subject. In one embodiment, the present disclosure provides a method for inhibiting tumor growth in a subject, comprising administering to the subject a pharmaceutical composition of the present disclosure together with one or more additional antibodies, such as an anti-VISTA antibody, an anti-LAG-3 antibody, an anti-PD-1 antibody, and / or an anti-CTLA-4 antibody. The pharmaceutical composition of the present disclosure may be used in combination with a chemotherapeutic agent that is toxic to cells. Other therapies that can be combined with an anti-PD-L1 antibody include, but are not limited to, interleukin-2 (IL-2) administration, radiation, surgery, or hormone ablation. In certain embodiments, the subject is a human.
[0133] The pharmaceutical compositions of the present disclosure may be used in combination with one or more other antibody or non-antibody agents to effectively reduce or eliminate pathogens in a subject, such as viruses, bacteria, fungi, or mycoplasma. For example, the pharmaceutical compositions of the present disclosure may be used with anti-infective agents, including, but not limited to, anti-viral agents, anti-bacterial agents, anti-fungal agents, and anti-mycoplasma agents.
[0134] The combination of therapeutic agents described herein may be administered simultaneously as a single composition in a pharma- ceutically acceptable carrier, or may be administered simultaneously as separate compositions with each agent in a pharma- ceutically acceptable carrier, hi another embodiment, the combination of therapeutic agents may be administered sequentially.
[0135] Additionally, when more than one dose of the combination therapy is administered sequentially, the order of sequential administration may be reversed or maintained in the same order at each time of administration, sequential administration may be combined with simultaneous administration, or any combination thereof.
[0136] The disclosure is further illustrated in the following examples, which should not be construed as further limiting. The contents of all figures and all references, Genbank sequences, patents and published patent applications cited throughout this application are hereby expressly incorporated by reference. [Example] Example 1. Construction of HEK293A cell lines stably expressing human, monkey or mouse PD-L1
[0137] Cell lines stably overexpressing human, monkey or mouse PD-L1 were constructed using HEK293A cells (Cobioer, NJ, China). Briefly, cDNA sequences encoding human, monkey and mouse PD-L1 proteins, respectively (amino acid sequences set forth in SEQ ID NOs: 35, 36 and 37, respectively) were synthesized and then subcloned into pLV-EGFP(2A)-Puro vector. Lentiviruses were generated in HEK-293T cells (Cobioer, NJ, China) by co-transfection of pLV-EGFP(2A)-Puro-PD-L1, psPAX and pMD2.G plasmids according to the instructions in the Lipofectamine 3000 kit (Thermo Fisher Scientific, US). Three days after co-transfection, lentiviruses were harvested from cell culture medium (DMEM medium (Cat. No.: SH30022.01, Gibco) containing 10% FBS (Cat. No.: FND500, Excell)). Finally, HEK293A cells were infected with lentiviruses to generate HEK293A cell lines stably expressing human, monkey and mouse PD-L1, respectively, namely HEK293A / human PD-L1 cells, HEK293A / monkey PD-L1 cells and HEK293A / mouse PD-L1 cells. The transfected HEK293A cells were then cultured in medium (DMEM+10% FBS) containing 0.2μg / ml puromycin (Cat. No.: A11138-03, Gibco) for 7 days. The expression of human PD-L1 and cynomolgus monkey PD-L1 was confirmed by FACS using a commercially available anti-PD-L1 antibody (PE anti-human PD-L1 antibody, Catalog No: 393607, Biolegend, US). Similarly, the expression of mouse PD-L1 was confirmed by FACS using a commercially available anti-mouse PD-L1 antibody (PE anti-mouse PD-L1 antibody, Catalog No: 124307, Biolegend, US). Example 2. Generation of hybridoma cell lines producing monoclonal mouse antibodies against human PD-L1
[0138] Mouse anti-human PD-L1 monoclonal antibodies (mAbs) were generated using conventional hybridoma fusion techniques with some modifications as follows. [Immunization]
[0139] Ten BALB / c mice (Beijing Vital River Laboratory Animal Technology Co.,Ltd, Beijing, China) were injected with recombinant human PD-L1(ECD)-hFc (Cat. No.: 10084-H02H, Sino Biological, CN) and recombinant cynomolgus PD-L1(ECD)-hFc (Cat. No.: 90251-C02H, Sino Biological, CN) according to the following scheme in Table 2. Human PD-L1(ECD)-hFc and cynomolgus PD-L1(ECD)-hFc were emulsified with equal volumes of complete Freund's adjuvant (Cat. No.: F5881-10*10ML, SIGMA, US), incomplete Freund's adjuvant (Cat. No.: F5506-6*10ML, SIGMA, US), or PBS by sonication. Table 2. Immunization scheme [Table 2]
[0140] One week after each boost, 50μl of mouse serum was collected from each mouse for titration by ELISA using recombinant human PD-L1(ECD)-his (Cat. No.: 10084-H08H, Sino Biological, CN) and cynomolgus PD-L1(ECD)-hFc (Cat. No.: 90251-C02H, Sino Biological, CN). Titering was also performed by FACS using HEK293A cells overexpressing human PD-L1, cynomolgus PD-L1 and mouse PD-L1 respectively, as prepared in Example 1.
[0141] Based on the ELISA and FACS results after the final boost, all 10 mice were used for hybridoma cell line generation. [Generation of hybridoma cell lines]
[0142] Hybridoma cell lines were generated using conventional hybridoma fusion techniques with minor modifications as follows.
[0143] Four days after the final boost, mice were sacrificed and spleens were harvested and prepared as single cell suspensions in PBS. Splenocytes were washed three times with DMEM medium (Cat. No.: SH30243.01B, Hyclone, US). Log-phase viable myeloma cells SP2 / 0 (CRL-1581, ATCC, US) were mixed with mouse splenocytes at a ratio of 1:4. Cells were then washed twice and then cell fusion was performed using PEG (Cat. No.: P7181, Sigma, US). Fused cells were washed three times with DMEM medium and suspended in cell growth medium (RPMI medium 1640 (Cat. No.: C22400500CP, Gibco)) supplemented with 10% FBS and 1X HAT (Cat. No.: H0262, Sigma). The cell suspension was transferred to a 96-well cell culture plate at 200 μl per well (approximately 5 × 10 4 The cells were plated in 100 mL of PBS (containing 100 x 100 cells) and incubated in a humidified 5% CO2 incubator at 37°C for 7 days. The growth medium was then replaced with a fresh one supplemented with 10% FBS and 1X HAT. After 2-3 days, the cell culture supernatant was harvested for hybridoma cell screening by ELISA and FACS. [Screening of hybridoma cell lines by ELISA]
[0144] To screen for hybridoma clones producing monoclonal antibodies that bind to human PD-L1, a high-throughput ELISA binding assay was performed using human PD-L1(ECD)-his (Cat. No.: 10084-H08H, Sino Biological, CN). Hybridoma clones that produced antibodies that bind to human PD-L1 were further tested for their ability to cross-react with cynomolgus PD-L1 using cynomolgus PD-L1(ECD)-hFc (Cat. No.: 90251-C02H, Sino Biological, CN).
[0145] By ELISA assay, 249 hybridoma clones were identified that had specific binding to both human and monkey PD-L1. [Screening of hybridoma cell lines by FACS]
[0146] The 249 hybridoma clones were further tested for their binding ability to human, cynomolgus monkey, and mouse PD-L1 expressed in HEK293A cells using the HEK293A / human PD-L1 cells, HEK293A / monkey PD-L1 cells, and HEK293A / mouse PD-L1 cells prepared in Example 1.
[0147] Based on FACS screening, 88 positive clones that showed high binding ability to both HEK293A / human PD-L1 cells and HEK293A / monkey PD-L1 cells were obtained. [Subcloning of hybridoma clones producing anti-PD-L1 antibodies]
[0148] 88 hybridoma clones were subjected to two rounds of subcloning. During subcloning, multiple subclones (n>3) from each parent clone were selected and tested by ELISA and FACS assays as described above. The subclones selected through this process were defined as hybridoma cells producing monoclonal antibodies. Finally, 79 subclones (one subclone from each parent clone) with high binding ability to both human PD-L1 and monkey PD-L1 were obtained. Example 3. Purification of mouse anti-PD-L1 monoclonal antibody
[0149] From the 79 clones obtained in Example 2, 10 clones with relatively high binding ability to human and monkey PD-L1 were further characterized. First, monoclonal mouse antibodies from 10 clones were purified. Briefly, hybridoma cells of each subclone were grown in T175 cell culture flasks each with 100ml fresh serum-free medium (Cat. No.: 12045-076, Gibco, US) containing 1% HT supplement (Cat. No.: 11067-030, Gibco). The cell cultures were placed in a 5% CO2, 37°C incubator for 10 days. The cell cultures were harvested and subjected to centrifugation at 3500 rpm for 5 minutes, and then filtered using a 0.22 μm capsule to remove cell debris. The monoclonal antibodies were then purified using a pre-equilibrated Protein A affinity column (Cat. No.: 17040501, GE, US) and eluted with elution buffer (20 mM citric acid, pH 3.0-pH 3.5). The antibodies were then maintained in PBS buffer (pH 7.0) and their concentrations were determined using a NanoDrop device.
[0150] The isotype of each purified antibody was determined by using a rapid isotyping kit with kappa and lambda mouse (catalog number: 26179, Thermal, US) and a mouse monoclonal antibody isotyping reagent (catalog number: IS02-1KT, Sigma, US) according to the manufacturer's manual.
[0151] Most of the clones, including 3C2 and 56E5, produced IgG1 / kappa antibodies, while the rest produced IgG2a / kappa or IgG2b / kappa antibodies. The expression titers of clones 3C2 and 56E5 were 6.3 mg / L and 7.8 mg / L, respectively. Example 4. Mouse anti-PD-L1 monoclonal antibodies bound to human and monkey PD-L1 expressed in HEK293A cells.
[0152] To determine whether the anti-PD-L1 antibodies bind to human, monkey, or mouse PD-L1 expressed in HEK293A cells, cell-based binding assays were performed by FACS using HEK293A cells stably overexpressing human, monkey, and mouse PD-L1, respectively, generated in Example 1. Briefly, 10 5 HEK293A cells were seeded into each well of a 96-well plate, and 50μl of serially diluted anti-PD-L1 antibodies were added thereto. After 1 hour of incubation at 4℃, the plate was washed three times with PBST. Then, APC-conjugated goat anti-mouse IgG (Cat. No.: 405308, BioLegend, US) diluted 1:500 was added to the plate. After 1 hour of incubation at 4℃, the plate was washed three times with PBS, and then cell fluorescence was monitored using a FACS machine (BD).
[0153] All mouse anti-PD-L1 monoclonal antibodies showed high binding affinity to both human PD-L1 and monkey PD-L1, but did not bind to mouse PD-L1. EC 50 The values are summarized in Table 3 below. Table 3. Binding ability of mouse anti-PD-L1 antibodies to human, monkey and mouse PD-L1 [Table 3] [Example 5. Epitope binning]
[0154] For epitope binning, a competitive ELISA assay was performed. Briefly, 96-well plates were coated with 100μl per well of 0.5μg / ml human PD-L1(ECD)-His (Cat. No.: 10084-H08H, Sino Biological, CN) overnight at 4℃. Wells were blocked with 200μl blocking buffer (PBS containing 1% BSA, 1% goat serum and 0.05% Tween® 20) for 2 hours at room temperature. Atezolizumab prepared using the amino acid sequence disclosed in WO2020226986 with human IgG1 (N297A) / kappa constant region, avelumab prepared using the amino acid sequence disclosed in WO2013079174A1 with human IgG1 / kappa constant region, durvalumab prepared using the amino acid sequence disclosed in US20190276543A1 with human IgG1 (L234F, L235E, P331S) / kappa constant region, and anti-Hel antibody (catalog number: LT12031, LifeTein, US) were each diluted to 5 μg / ml and 100 μl per well was added to the plate. The plate was incubated at room temperature for 1 hour, washed 3 times with PBST, and 100 μl of 1 μg / ml antibody of the present disclosure was added and incubated at room temperature for 1 hour. The ELISA plate was washed three times with PBST, and anti-mouse Fc-HRP (Cat. No.: A9309-1MC, Sigma, US) diluted 1:20000 was added and incubated at room temperature for 1 hour. The plate was washed three times with PBST, and developed with freshly prepared Ultra-TMB (Cat. No.: TMB-S-003, Huzhou Yingchuang, CN) for 5 minutes at room temperature. The absorbance at 450 nm was measured in a microplate reader (Thermo Multiscan FC).
[0155] Nine murine antibodies, including those from clone 3C2, did not compete with atezolizumab, avelumab, or durvalumab for epitope binding, indicating that they bound to different epitopes compared to the reference antibodies. Antibodies from clone 56E5 competed with all three reference antibodies for epitope binding, indicating that the 56E5 antibody bound to the same or similar epitope as the references bound. Example 6. Mouse anti-PD-L1 antibodies inhibited PD-1-PD-L1 interaction.
[0156] As reported, PD-1 is a receptor for PD-L1. To measure the blocking ability of antibodies against PD-1-PD-L1 interaction, a cell-based blocking assay was performed by FACS using HEK293A cells stably overexpressing human PD-L1, as generated in Example 1. Briefly, 10 5 HEK293A / human PD-L1 cells were seeded into each well of a 96-well plate, to which 50μl of serially diluted anti-PD-L1 antibodies were added. After 1 hour of incubation at 4℃, the plate was washed three times with PBST. Then, 200μg / ml PD1-hFc protein (Cat. No.: 10377-H02H, Sino Biological, CN) was added to the plate at 100μl per well. After 1 hour of incubation at 4℃, the plate was washed three times with PBST, and 500-fold diluted PE-conjugated goat anti-human IgG (Cat. No.: PAI-86078, Thermofisher, US) was added. After 1 hour of incubation at 4℃, the plate was washed three times with PBST, and then cell fluorescence was monitored using a FACS machine (BD).
[0157] The data showed that only two antibodies failed to block the PD-L1-PD-1 interaction, while the remaining eight, including 3C2 and 56E5, blocked the PD-L1-PD-1 interaction. EC 50 The values are summarized in Table 4 below. Table 4. Blocking ability of mouse anti-PD-L1 antibodies against PD-L1-PD-1 interaction [Table 4] [Example 7. Mouse anti-PDL1 antibody promoted T cell activation]
[0158] The effect of mouse anti-PDL1 antibodies on APC-mediated T cell activation was studied in a mixed lymphocyte reaction (MLR) assay.
[0159] Briefly, PBMCs were collected from blood samples of one healthy human donor by density gradient centrifugation and then resuspended in RPMI1640 medium. PBMCs were cultured in a 37°C incubator for 2 hours, and cells attached to the wall of the vessel were collected as isolated monocytes. Monocytes were cultured in RPMI1640 medium supplemented with 10% FBS, 100ng / ml recombinant human GM-CSF (catalog number: 7954-GM, R&D, US) and 100ng / ml recombinant human IL-4 (catalog number: 6507-IL, R&D, US). After 3 days, half of the medium was replaced with fresh one. On the sixth day of culture, the culture medium was replaced with fresh medium containing 100ng / ml recombinant human GM-CSF, 100ng / ml recombinant human IL-4, 10ng / ml rhTNF-α (Cat. No.: 210-TA-100, R&D, US), 1000U / ml rhIL-6 (Cat. No.: 7270-IL-025, R&D, US), 1μg / ml PGE2 (Cat. No.: 363-24-6, TOCRIS, US) and 10ng / ml IL-1β (Cat. No.: 210-LB-025, R&D, US). The cells were cultured for another 2 days. Next, PBMCs were collected from a blood sample of another healthy human donor by density gradient centrifugation and then resuspended in RPMI1640 medium. Invitrogen Dynabeads Untouched Human CD4 + CD4 T cell isolation kit (catalog number: 11346D, Thermal Fisher Scientific, US) was used according to the manufacturer's instructions. + T cells were isolated from PBMCs. Dendritic cells from the first donor and CD4 +T cells were cultured in 96-well U-bottom plates at 2.5 × 10 4 Cells / well and 5 x 10 4 Cells were seeded at 1000 x g / well. Plates were added with 50 μl of anti-PD-L1 antibody (0.1-10 μg / ml) or anti-Hel control (Cat. No.: LT12031, LifeTein, US) and further incubated for 72 h. IFN-γ concentrations were determined by ELISA kit (Cat. No.: SIF50, R&D, US) according to the manufacturer's protocol. Assays were performed in triplicate.
[0160] As shown in Figure 1A, the highest IFN-γ levels were detected in wells treated with 3C2 and 56E5 antibodies, which dose-dependently increased IFN-γ secretion by T cells compared to the anti-Hel isotype control (Figure 1B). Example 8. Expression and purification of chimeric anti-PD-L1 antibodies
[0161] The 3C2 and 56E5 antibodies were further studied. The heavy / light chain variable region sequences of these two antibodies were cloned from hybridoma cells using standard PCR methods with one set of primers and sequenced as described in the literature (Juste et al., (2006), Anal Biochem. 349(1):159-61). The sequences are summarized in Tables 1 and 8. An expression vector was constructed by inserting sequences encoding the variable region sequences and the human IgG1(N297A) / kappa constant region sequence (amino acid sequences of the heavy and light chain constant regions set forth in SEQ ID NOs: 33 and 34, respectively) into the XhoI / BamHI restriction sites of pCDNA3.1 (Invitrogen, Carlsbad, US).
[0162] The expression vector was transfected with PEI into HEK-293F cells (Cobioer, NJ, CN). Specifically, HEK-293F cells were cultured in FreeStyle™ 293 Expression Medium (Cat. No.: 12338-018, Gibco) and transfected with the expression vector using a 1:3 DNA:PEI ratio of polyethyleneimine (PEI), 1.5 μg DNA per milliliter of cell medium. The transfected HEK-293F cells were cultured in an incubator at 37° C. under 5% CO2 with shaking at 120 RPM. After 10-12 days, the supernatant was harvested and the monoclonal antibodies were purified as described in Example 3. Example 9. Chimeric anti-PD-L1 monoclonal antibodies bind to human and monkey PD-L1
[0163] The chimeric anti-PD-L1 antibodies were further characterized for their ability to bind to human PD-L1, monkey PD-L1, and mouse PD-L1. Briefly, ELISA plates were coated with 100μl per well of 500ng / ml human PD-L1(ECD)-his (Cat. No.: 10084-H08H, Sino Biological, CN) overnight at 4℃. Wells were blocked with 200μl blocking buffer (PBS containing 1% BSA, 1% goat serum, and 0.05% Tween® 20) for 2 hours at room temperature, and 100μl of serially diluted anti-PD-L1 antibodies (starting from 40μg / ml) were added and incubated for 1 hour at room temperature. The plate was washed three times with PBST (PBS + 0.05% Tween® 20) and Goat Anti-Human IgG-HRP (Cat. No.: 31410, Thermal, US) diluted 1:5000 was added and incubated at room temperature for 1 hour. The plate was developed with freshly prepared Ultra-TMB (Cat. No.: 555214, BD, US) for 5 minutes at room temperature. The absorbance at 450 nm was read on a SpectraMax® i3X reader (Molecular Devices, US).
[0164] The species cross-reactivity of anti-PD-L1 mAbs to monkey or mouse PD-L1 was further assessed by direct ELISA. Briefly, 96-well ELISA plates were coated with 100μl per well of 500ng / ml monkey PD-L1(ECD)-his (Cat. No.: 90251-C08H, Sino Biological, CN) or mouse PD-L1(ECD)-his (Cat. No.: 50010-M08H, Sino Biological, CN), then 100μl of serially diluted anti-PD-L1 antibodies (starting from 40μg / ml) were added and incubated. Goat anti-human IgG conjugated with HRP (Cat. No.: 31410, Thermal, US) was then added to the plates and incubated for 1 hour at room temperature. Plates were developed with freshly prepared Ultra-TMB (Cat. No.: 555214, BD, US) for 5 min at room temperature and absorbance at 450 nm was read on a SpectraMax® i3X reader (Molecular Devices, US). Atezolizumab was used as the reference antibody.
[0165] EC of representative antibodies in binding assay 50 The values are summarized in Table 5. The data showed that all chimeric antibodies had high binding affinity to human and monkey PD-L1, but did not bind to mouse PD-L1. The binding affinity of the chimeric 3C2 and 56E5 antibodies was comparable to that of their parent antibodies and higher than that of atezolizumab. Table 5. Binding ability of chimeric anti-PDL1 mAbs to human, monkey and mouse PD-L1 [Table 5]
[0166] The antibodies were also tested for their binding ability to HEK293A / human PD-L1 cells, HEK293A / monkey PD-L1 cells and HEK293A / mouse PD-L1 cells generated in Example 1 according to the protocol in Example 4. The test results are shown in Figure 2.
[0167] As shown in Figure 2, the chimeric antibody had high binding affinity to both human PD-L1 (Figure 2(A)) and monkey PD-L1 (Figure 2(B)), but did not bind to mouse PD-L1 (Figure 2(C)). Example 10. Chimeric anti-PD-L1 monoclonal antibodies inhibited PD-L1-PD-1 interaction.
[0168] The chimeric anti-PD-L1 antibodies were further characterized for their blocking ability against PD-1-PD-L1 interaction using HEK293A / human PD-L1 cells generated in Example 1 according to the protocol in Example 6. The test results are shown in Figure 3.
[0169] Based on Figure 3, the chimeric antibodies obviously blocked PD1-PD-L1 interaction, and chimeric 56E5 showed the best blocking effect, which was better than that of atezolizumab. Example 11. Chimeric anti-PD-L1 monoclonal antibody promotes T cell activation.
[0170] These chimeric antibodies were further tested for their ability to stimulate T cell responses in a T cell functional assay according to the protocol in Example 7. IFN-γ levels were determined using a commercially available kit (catalog number: STA00C, R&D, US) according to the manufacturer's instructions.
[0171] As shown in Figure 4, all the chimeric antibodies tested promoted T cell activity and increased IFN-γ secretion. The chimeric 56E5 antibody was more potent than atezolizumab in activating T cells at low doses, e.g., 0.01 μg / mL. The ability of the chimeric 3C2 antibody in activating T cells was higher than atezolizumab at all doses tested. Example 12. Humanization of anti-PD-L1 antibody
[0172] Based on the above assays, 3C2 and 56E5 were humanized and further investigated. Humanization of murine antibodies was performed using well-established CDR grafting methods (U.S. Patent No. 5,225,539, which is incorporated herein by reference in its entirety), as described in detail below.
[0173] To select acceptor frameworks for humanization of mouse antibodies 3C2 and 56E5, the light and heavy chain variable region sequences of 3C2 and 56E5 were BLAST searched against the human immunoglobulin gene database at the NCBI website (http: / / www.ncbi.nlm.nih.gov / igblast / ). The human germline IGVH and IGVK with the highest homology to 3C2 and 56E5 were selected as acceptors for humanization. For 3C2, the selected human heavy chain acceptor was IGHV1-46*01, and the selected human light chain acceptor was IGKV1-33*01. For 56E5, the selected human heavy chain acceptor was IGHV4-31*02, and the selected human light chain acceptor was IGKV4-1*01.
[0174] To identify key framework residues that may play an important role in supporting the CDR loop structure and therefore design back mutations in the humanized antibody, three-dimensional structures were simulated for the variable domains of 3C2 and 56E5.
[0175] Based on the structural modeling described above, we identified 10 potential reversion mutations in the heavy chain of 3C2 (M48I, M70L, R72V, R87T, R38K, A40R, T28S, Y95F, R67K, V68A) and 7 reversion mutations in the light chain (K45R, Y49S, F71Y, T22S, K42N, T85V, F73L). In 56E5, we identified 10 potential reversion mutations in the heavy chain (S30T, W47Y, I48M, S70T, R87T, K43N, G44K, V71R, V67I, T68S) and 4 reversion mutations in the light chain (I21M, R18K, A19V, V89L).
[0176] For 3C2, five humanized heavy chain variable regions and four humanized light chain variable regions were designed, resulting in a total of 13 humanized antibodies. For 56E5, four humanized heavy chain variable regions and three humanized light chain variable regions were designed, resulting in a total of 12 humanized antibodies. The sequences of these humanized antibodies are summarized in Tables 1 and 8. Table 6. Reversion mutations [Table 6]
[0177] The sequences encoding the heavy chain variable region and human IgG1 constant region with the N297A mutation, and the sequences encoding the light chain variable region and human kappa constant region (amino acid sequences of the heavy chain constant region and light chain constant region set forth in SEQ ID NOs: 33 and 34, respectively) were chemically synthesized and then subcloned into the GS expression vector (Invitrogen, USA) using the EcoRI / XhoI and ClaI / HindIII restriction sites, respectively. All expression constructs were confirmed by DNA sequencing. The heavy and light chain expression vectors were transfected into the EXPiCHO expression system (Invitrogen, USA) according to the protocol described in Example 8 to transiently express the 25 humanized anti-PD-L1 antibodies. The humanized antibodies were purified as described in Example 3. Example 13. Binding ability / affinity of humanized anti-PD-L1 antibodies
[0178] The humanized anti-PD-L1 antibodies were characterized for their binding ability to HEK293A / human PD-L1 cells, HEK293A / monkey PD-L1 cells and HEK293A / mouse PD-L1 cells according to the protocols described in Example 4. The results are shown in Figure 5 and Figure 6.
[0179] The antibodies were also tested for binding affinity to human and monkey PD-L1 in SPR assays using a BIAcore™ 8K instrument (GE Life Sciences). Briefly, 100-200 response units (RU) of human PD-L1(ECD)-his protein (Cat. No.: 10084-H08H, Sino Biological, CN) or monkey PD-L1(ECD)-his protein (Cat. No.: 90251-C08H, Sino Biological, CN) were coupled to a CM5 biosensor chip (Cat. No.: BR-1005-30, GE Life Sciences, US) and unreacted groups were blocked with 1 M ethanolamine. Serially diluted antibodies ranging from 0.3 μM to 10 μM were injected at 30 μL / min in SPR buffer (HBS-EP buffer, pH 7.4, Cat. No.: BR-1006-69, GE Life Sciences, US). The binding affinity was calculated by subtracting the RU of the blank control. a ) and dissociation rate (k d ) was calculated using a one-to-one Langmuir binding model (BIA Evaluation Software, GE Life Sciences) to obtain the equilibrium dissociation constant K D k d / k a The ratio was calculated, and the results are shown in Table 7.
[0180] As shown in Figures 5 and 6, the humanized anti-PDL1 antibodies had high binding affinity to both human PD-L1 and monkey PD-L1, which was comparable to that of their respective chimeric antibodies.
[0181] Based on Table 7, the humanized 3C2 and 56E5 antibodies had similar or higher binding affinity to human PD-L1 compared to atezolizumab. Table 7. Binding affinity of humanized anti-PDL1 antibodies to human / monkey PD-L1 [Table 7] Example 14. Humanized anti-PD-L1 antibodies activate T cells
[0182] These antibodies were further tested for their ability to stimulate T cell responses in an MLR assay according to the protocol in Example 7. IFN-γ levels were determined using a commercially available kit (catalog number: STA00C, R&D, US) according to the manufacturer's instructions.
[0183] All humanized antibodies promoted T cell activation and increased IFN-γ secretion in a dose-dependent manner, as shown in Figure 7. Antibodies 56E5VH5VL4 and 3C2VH4VL4 showed the highest potency in T cell activation. [Example 15. Epitope binning]
[0184] For epitope binning, a competitive SPR assay was performed. Briefly, 1 μg / ml human PD-L1(ECD)-his protein (Cat. No.: 10084-H08H, Sino Biological, CN) was bound to a CM5 biosensor chip (Cat. No.: BR-1005-30, GE Life Sciences, US), and unreacted groups were blocked with 1 M ethanolamine. Next, 5 μg / ml of 56E5VH5VL4 or 3C2VH4VL4 antibody was injected at 30 μL / min in SPR buffer (HBS-EP buffer, pH 7.4, Catalog No.: BR-1006-69, GE Life Sciences, US), followed by 5 μg / ml of the second anti-PDL1 antibody (56E5VH5VL4, 3C2VH4VL4, atezolizumab, avelumab or durvalumab) at 30 μL / min. Binding affinity was calculated by subtracting the RU of the blank control. The data was then fitted using a 1:1 interaction model.
[0185] As shown in Figures 8 and 9, 56E5VH5VL4 and atezolizumab did not bind to the PD-L1 molecule at the same time, suggesting that they may bind to the same or similar epitopes. Similarly, 56E5VH5VL4 competed with avelumab and durvalumab for epitope binding. 56E5VH5VL4 and 3C2VH4VL4 bound to the PD-L1 molecule at the same time, meaning that they bound to different epitopes. Antibody 3C2VH4VL4 bound to the PD-L1 molecule at the same time as 56E5VH5VL4, atezolizumab, avelumab or durvalumab, suggesting that 3C2VH4VL4 may bind to a novel epitope different from that bound by the other antibodies. [Example 16. Humanized anti-PDL1 antibody had in vivo antitumor effect]
[0186] The in vivo antitumor activity of anti-PD-L1 antibodies 56E5VH5VL4 and 3C2VH6VL5 with human IgG1(N297A) / kappa constant region was investigated in an animal model established by implanting MC38 mouse colon adenocarcinoma in transgenic mice carrying human PD-L1 (GemPharmatech Co.Ltd, China). On day 0, mice were injected with 1 × 10 6 MC38 cells were injected subcutaneously in one flank and randomized into seven groups with eight animals per group. The animals were then intraperitoneally administered 56E5VH5VL4 (10 mg / kg), 3C2VH6VL5 (10 mg / kg), avelumab (10 mg / kg) and PBS, respectively, on days 0, 4, 7, 11, 14 and 18.
[0187] Tumor size and mouse body weight were monitored over time. Specifically, the length (longest diameter) and width (diameter perpendicular to the length) of the tumor were measured with a caliper, and the tumor volume was calculated as 0.5×D×d 2 The tumor size was determined by calculating the tumor size as follows: The tumor size in the control group was 3.5 cm 3 The study was terminated before the tumor size reached 0.01. One-way ANOVA was used to identify differences in tumor size between groups.
[0188] As shown in Figure 10, all anti-PD-L1 antibodies significantly inhibited tumor growth in mice, and the anti-tumor effects of 56E5VH5VL4 and 3C2VH6VL5 were better than that of avelumab.
[0189] The sequences in this application are summarized in Table 8 as follows: Table 8. Sequences [Table 8] JPEG0007600487000009.jpg206146JPEG0007600487000010.jpg206143
[0190] Having thus described preferred embodiments of the present disclosure in detail, it should be understood that the present disclosure as defined by the above paragraphs should not be limited to the particular details set forth in the above description, as many obvious variations thereof are possible without departing from the spirit or scope of the present disclosure.
[0191] [Item 1] 1. An isolated monoclonal antibody that binds to PD-L1, or an antigen-binding portion thereof, comprising: a heavy chain variable region having a VH-CDR1 region, a VH-CDR2 region, and a VH-CDR3 region, and a light chain variable region having a VL-CDR1 region, a VL-CDR2 region, and a VL-CDR3 region, wherein the VH-CDR1 region, the VH-CDR2 region, the VH-CDR3 region, the VL-CDR1 region, the VL-CDR2 region, and the VL-CDR3 region comprise the amino acid sequences of: (1) SEQ ID NOs: 1, 2, 3, 4, 5, and 6, respectively; or (2) SEQ ID NOs: 7, 8, 9, 10, 11, and 12, respectively. [Item 2] 2. The isolated monoclonal antibody or antigen-binding portion thereof according to Item 1, wherein the heavy chain variable region has an amino acid sequence having at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identity to any one of SEQ ID NOs: 13 to 23. [Item 3] 2. The isolated monoclonal antibody or antigen-binding portion thereof according to Item 1, wherein the light chain variable region has an amino acid sequence having at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identity to any one of SEQ ID NOs: 24 to 32. [Item 4] (1) SEQ ID NO:13 and 24, respectively; (2) SEQ ID NO:14 and 25, respectively; (3) SEQ ID NO:14 and 26, respectively; (4) SEQ ID NO:14 and 27, respectively; (5) SEQ ID NO:15 and 25, respectively; (6) SEQ ID NO:15 and 26, respectively; (7) SEQ ID NO:15 and 27, respectively; (8) SEQ ID NO:16 and 25, respectively; (9) SEQ ID NO:16 and 26, respectively; (10) SEQ ID NO:16 and 27, respectively; (11) SEQ ID NO:17 and 25, respectively; (12) SEQ ID NO:17 and 26, respectively; (13) SEQ ID NO:17 and 27, respectively; (14) SEQ ID NO:18 and 28, respectively; (15) SEQ ID NO:19 and 29, respectively; (16) SEQ ID NO:20 and 30, respectively; (17) SEQ ID NO:2 (18) SEQ ID NOs: 20 and 32, respectively; (19) SEQ ID NOs: 21 and 30, respectively; (20) SEQ ID NOs: 21 and 31, respectively; (21) SEQ ID NOs: 21 and 32, respectively; (22) SEQ ID NOs: 22 and 30, respectively; (23) SEQ ID NOs: 22 and 31, respectively; (24) SEQ ID NOs: 22 and 32, respectively; (25) SEQ ID NOs: 23 and 30, respectively; (26) SEQ ID NOs: 23 and 31, respectively; or (27) SEQ ID NOs: 23 and 32, respectively, having an amino acid sequence having at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identity to SEQ ID NOs: 23 and 32, respectively. [Item 5] 2. The isolated monoclonal antibody or antigen-binding portion thereof according to item 1, comprising a heavy chain constant region linked to the heavy chain variable region and having an amino acid sequence that has at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identity to SEQ ID NO: 33, and / or a light chain constant region linked to the light chain variable region and having an amino acid sequence that has at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identity to SEQ ID NO: 34. [Item 6] (a) binds to human PD-L1; (b) binds to monkey PD-L1; (c) does not bind to mouse PD-L1; (d) blocks PD-L1-PD-1 interaction; (e) promotes T cell activation; and / or (f) has in vivo anti-tumor activity. [Item 7] 2. The isolated monoclonal antibody or antigen-binding portion thereof of item 1, which is murine, chimeric or humanized. [Item 8] 8. A nucleic acid molecule encoding the isolated monoclonal antibody or antigen-binding portion thereof according to any one of items 1 to 7. [Item 9] An expression vector comprising the nucleic acid molecule of item 8. [Item 10] A host cell comprising the expression vector according to item 9. [Item 11] 8. A pharmaceutical composition comprising the isolated monoclonal antibody or antigen-binding portion thereof according to any one of items 1 to 7, and a pharma- ceutically acceptable carrier. [Item 12] 12. A method for treating cancer in a subject in need thereof, comprising administering to the subject the pharmaceutical composition of item 11. [Item 13] 13. The method of claim 12, wherein the cancer is selected from the group consisting of melanoma, non-small cell lung cancer, renal cell carcinoma, Hodgkin's lymphoma, bladder cancer, head and neck cancer, neuroendocrine tumors, mantle cell lymphoma, diffuse large B-cell lymphoma, and follicular lymphoma. [Item 14] 12. A method for treating an infectious disease in a subject in need thereof, comprising administering to the subject the pharmaceutical composition of item 11. [Item 15] 15. The method of claim 14, wherein the infectious disease is a chronic Hepatitis B virus (HBV), Hepatitis C virus (HCV), human immunodeficiency virus (HIV), or simian immunodeficiency virus (SIV) infection.
Claims
1. 1. An isolated monoclonal antibody, or an antigen-binding portion thereof, capable of binding to PD-L1, comprising a heavy chain variable region having a VH-CDR1 region, a VH-CDR2 region, and a VH-CDR3 region, and a light chain variable region having a VL-CDR1 region, a VL-CDR2 region, and a VL-CDR3 region, wherein the VH-CDR1 region, the VH-CDR2 region, the VH-CDR3 region, the VL-CDR1 region, the VL-CDR2 region, and the VL-CDR3 region comprise the amino acid sequences of: (1) SEQ ID NOs: 1, 2, 3, 4, 5, and 6, respectively; or (2) SEQ ID NOs: 7, 8, 9, 10, 11, and 12, respectively.
2. 2. The isolated monoclonal antibody or antigen-binding portion thereof of claim 1, wherein the heavy chain variable region has an amino acid sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identity to any one of SEQ ID NOs: 13-23.
3. 3. The isolated monoclonal antibody or antigen-binding portion thereof of claim 1 or 2, wherein the light chain variable region has an amino acid sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identity to any one of SEQ ID NOs: 24-32.
4. wherein the heavy chain variable region and the light chain variable region are (1) SEQ ID NOs: 13 and 24, respectively; (2) SEQ ID NOs: 14 and 25, respectively; (3) SEQ ID NOs: 14 and 26, respectively; (4) SEQ ID NOs: 14 and 27, respectively; (5) SEQ ID NOs: 15 and 25, respectively; (6) SEQ ID NOs: 15 and 26, respectively; (7) SEQ ID NOs: 15 and 27, respectively; (8) SEQ ID NOs: 16 and 25, respectively; (9) SEQ ID NOs: 16 and 26, respectively; (10) SEQ ID NOs: 16 and 27, respectively; (11) SEQ ID NOs: 17 and 25, respectively; (12) SEQ ID NOs: 17 and 26, respectively; (13) SEQ ID NOs: 17 and 27, respectively; (14) SEQ ID NOs: 18 and 28, respectively; (15) SEQ ID NOs: 19 and 29, respectively; (16) SEQ ID NOs: 20 and 30, respectively; (17) SEQ ID NOs: 20 and 31, respectively; (18) SEQ ID NOs: 20 and 32, respectively; (19) SEQ ID NOs: 21 and 30, respectively; (20) SEQ ID NOs: 21 and 31, respectively; (21) SEQ ID NOs: 21 and 32, respectively; (22) SEQ ID NOs: 22 and 30, respectively; (23) SEQ ID NOs: 22 and 31, respectively; (24) SEQ ID NOs: 22 and 32, respectively; (25) SEQ ID NOs: 23 and 30, respectively; (26) SEQ ID NOs: 23 and 31, respectively; or (27) SEQ ID NOs: 23 and 32, respectively. The isolated monoclonal antibody or antigen-binding portion thereof of any one of claims 1 to 3, having an amino acid sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identity to SEQ ID NOs: 23 and 32, respectively.
5. 5. The isolated monoclonal antibody or antigen-binding portion thereof of claim 1, comprising a heavy chain constant region linked to the heavy chain variable region and having an amino acid sequence at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identical to SEQ ID NO: 33, and / or a light chain constant region linked to the light chain variable region and having an amino acid sequence at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identical to SEQ ID NO:
34.
6. A heavy chain constant region linked to the C-terminus of the heavy chain variable region, and a light chain constant region linked to the C-terminus of the light chain variable region, wherein the heavy chain constant region is PD-L1 + Induce reduced antibody-dependent cell-mediated cytotoxicity against cells or PD-L1 + 6. The isolated monoclonal antibody or antigen-binding portion thereof of claim 1, which does not induce antibody-dependent cell-mediated cytotoxicity against cells.
7. 7. The isolated monoclonal antibody or antigen-binding portion thereof of any one of claims 1 to 6, which is a murine, chimeric or humanized antibody or antigen-binding portion thereof.
8. A nucleic acid molecule encoding the isolated monoclonal antibody or antigen-binding portion thereof of any one of claims 1 to 7.
9. An expression vector comprising the nucleic acid molecule of claim 8.
10. A host cell comprising the expression vector of claim 9.
11. A pharmaceutical composition comprising an isolated monoclonal antibody or an antigen-binding portion thereof described in any one of claims 1 to 7, a nucleic acid molecule described in claim 8, an expression vector described in claim 9, or a host cell described in claim 10, and a pharma- ceutical acceptable carrier.
12. 12. The pharmaceutical composition of claim 11 for use in treating cancer in a subject in need thereof.
13. 13. The pharmaceutical composition for use according to claim 12, wherein the cancer is selected from the group consisting of melanoma, non-small cell lung cancer, renal cell carcinoma, Hodgkin's lymphoma, bladder cancer, head and neck cancer, neuroendocrine tumors, mantle cell lymphoma, diffuse large B-cell lymphoma, and follicular lymphoma.
Citation Information
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