Amino acid sequences derived from SARS-CoV-2 and their uses

Abstract

The technology disclosed herein provides amino acid sequence information that is usable for producing an antibody against a protein derived from a new coronavirus (SARS-CoV-2). A synthetic peptide with the amino acid sequence information disclosed herein is recognized as an antigen against at least one mammal. This synthetic peptide contains any of the following amino acid sequences: (1) MKFLVFLGIITTVAA (SEQ ID NO: 1); (2) MFVFLVLLPLVSSQC (SEQ ID NO: 2); and (3) MKIILFLALITLATC (SEQ ID NO: 3) and consists of not more than 20 amino acid residues in total.

Description

[Technical Field]

[0001] The present invention relates to amino acid sequence information of proteins derived from the novel coronavirus SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), which may contribute to the prevention and treatment of infection with and against the spread of SARS-CoV-2, and its use. This application claims priority based on Japanese Patent Application No. 2020-131022, filed on July 31, 2020, the entire contents of which are incorporated herein by reference. [Background technology]

[0002] SARS-CoV-2 is a pathogenic virus that infects humans and causes COVID-19 (Coronavirus disease 2019). It rapidly causes severe symptoms such as pneumonia and can be fatal. Since the discovery of this virus between December 2019 and early 2020, the infection has spread worldwide, and like previously known viruses such as SARS and MERS, it has become a viral infection that has a severe impact on the global economy and human lives.

[0003] The genome sequence of SARS-CoV-2 has been published in Non-Patent Document 1, and can be accessed from a database published by the National Center for Biotechnology Information (NCBI). According to this database, it is predicted that there are at least 10 genes in the SARS-CoV-2 genome, and researchers in a variety of fields, including virology, genetics, biochemistry, and pharmacology, are rapidly advancing their research. [Prior art documents] [Non-patent literature]

[0004] [Non-Patent Document 1] Wu, F., et al., Nature, Vol. 579, No.7798 (2020), pp. 265-269 Summary of the Invention [Problem to be solved by the invention]

[0005] However, to date, no effective vaccines or antiviral drugs have been developed against SARS-CoV-2. As a result, treatment for infected individuals is limited to symptomatic treatment, and the development of vaccines and antiviral drugs against SARS-CoV-2 is urgently needed. Furthermore, even if the spread of SARS-CoV-2 infection subsides, there is a possibility that it could mutate, like the influenza virus, causing further spread of infection, so a variety of vaccines and antiviral drugs are desired.

[0006] The present invention was made in light of the above-mentioned current situation, and its main objective is to provide amino acid sequence information for producing antibodies against proteins derived from SARS-CoV-2. Specifically, the present invention provides synthetic peptides having the amino acid sequence information and compositions comprising the synthetic peptides. Another related objective is to provide methods for producing anti-SARS-CoV-2 antibodies using the synthetic peptides or compositions. [Means for solving the problem]

[0007] The present inventors analyzed the amino acid sequences encoded by the gene sequences present in the SARS-CoV-2 genome sequence using SignalP-5.0, a web-based signal peptide prediction software, and found three proteins predicted to have signal peptides. The inventors then speculated that because signal peptides are essential for the virus's self-replication (i.e., causing the spread of infection), the signal peptide sequences of SARS-CoV-2, which self-replicate (i.e., cause the spread of infection), are likely to be conserved. Therefore, they conducted extensive research to determine whether administering antigens containing the amino acid sequences of these predicted signal peptides to mammals or other organisms might produce anti-SARS-CoV-2 signal peptide antibodies with epitopes in regions of SARS-CoV-2 that are less likely to mutate. As a result, the following three amino acid sequences were identified: (1) MKFLVFLGIITTVAA (SEQ ID NO: 1); (2) MFVFLVLLPLVSSQC (SEQ ID NO: 2); (3) MKIILFLALITLATC (SEQ ID NO: 3); The present invention was thus accomplished by successfully obtaining an antibody with a high antibody titer against the virus.

[0008] That is, the synthetic peptide disclosed herein is a synthetic peptide that is recognized as an antigen by at least one type of mammal, comprises the amino acid sequence of any one of SEQ ID NOS: 1 to 3, and has a total of 20 or less amino acid residues.

[0009] According to this configuration, the amino acid sequence is recognized by mammals as a foreign substance (antigen), and therefore, when the synthetic peptide is administered to a mammal, antibodies are produced against the synthetic peptide as an antigen.

[0010] The composition disclosed herein is a composition containing a portion recognized as an antigen by at least one type of mammal, and comprises a synthetic peptide containing the amino acid sequence of any one of SEQ ID NOs: 1 to 3 and having a total of 20 or less amino acid residues, and a carrier protein. In this configuration, the large size and complexity of the carrier protein can enhance the immunogenicity of the synthetic peptide.

[0011] In addition, in a preferred embodiment of the composition disclosed herein, the carrier protein is bound to the C-terminal or N-terminal side of the amino acid sequence shown in any one of SEQ ID NOs: 1 to 3 via a specific crosslinker. This configuration places the synthetic peptide further away from the surface of the carrier protein, which can improve the probability of producing antibodies that have the synthetic peptide as an epitope.

[0012] The present teachings also provide a method for producing an anti-SARS-CoV-2 antibody. Specifically, the method for producing an anti-SARS-CoV-2 antibody disclosed herein utilizes the amino acid information of any of SEQ ID NOS: 1 to 3 as an antigen for producing the antibody. This allows the production of an antibody against the predicted signal peptide sequence of a protein derived from SARS-CoV-2.

[0013] Furthermore, a preferred embodiment of the antibody production method disclosed herein utilizes the amino acid sequence information shown in SEQ ID NO: 1. This makes it possible to produce antibodies against the predicted signal peptide sequence of a protein derived from SARS-CoV, which have particularly high antibody titers. [Brief explanation of the drawings]

[0014] [Figure 1] Figure 1 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 4 in pre-immune serum, first and second evaluation sera obtained during the process of administering multiple times to a first rabbit a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 4 and keyhole limpet hemocyanin (KLH). [Figure 2]Figure 2 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 4 in the second evaluation serum, the third evaluation serum, and serum prepared by whole blood collection (serum at the time of whole blood collection) obtained by administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 4 and keyhole limpet hemocyanin (KLH) to a first rabbit multiple times. [Figure 3] Figure 3 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 4 in pre-immune serum, first and second evaluation sera obtained during the process of administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 4 and keyhole limpet hemocyanin (KLH) multiple times to a second rabbit. [Figure 4] Figure 4 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 4 in the second evaluation serum, the third evaluation serum, and serum prepared by whole blood collection (serum at the time of whole blood collection) obtained by administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 4 and keyhole limpet hemocyanin (KLH) to a second rabbit multiple times. [Figure 5] Figure 5 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 2 in pre-immune serum, first and second evaluation sera obtained during the process of administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 2 and keyhole limpet hemocyanin (KLH) multiple times to a third rabbit. [Figure 6] Figure 6 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 2 in the second evaluation serum, the third evaluation serum, and serum prepared by whole blood collection (serum at the time of whole blood collection), obtained by administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 2 and keyhole limpet hemocyanin (KLH) multiple times to a third rabbit. [Figure 7]Figure 7 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 2 in pre-immune serum, first and second evaluation sera obtained during the process of administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 2 and keyhole limpet hemocyanin (KLH) multiple times to a fourth rabbit. [Figure 8] Figure 8 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 2 in the second evaluation serum, the third evaluation serum, and serum prepared by whole blood collection (serum at the time of whole blood collection), obtained by administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 2 and keyhole limpet hemocyanin (KLH) to a fourth rabbit multiple times. [Figure 9] Figure 9 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 3 in pre-immune serum, first and second evaluation sera obtained during the process of administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 3 and keyhole limpet hemocyanin (KLH) multiple times to a fifth rabbit. [Figure 10] Figure 10 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 3 in the second evaluation serum, the third evaluation serum, and serum prepared by whole blood collection (serum at the time of whole blood collection), obtained by administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 3 and keyhole limpet hemocyanin (KLH) to the fifth rabbit multiple times. [Figure 11] Figure 11 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 3 in pre-immune serum, first and second evaluation sera obtained during the process of administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 3 and keyhole limpet hemocyanin (KLH) multiple times to a sixth rabbit. [Figure 12]Figure 12 is a graph showing the evaluation of antibody titers against the synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 3 in the second evaluation serum, the third evaluation serum, and serum prepared by whole blood collection (serum at the time of whole blood collection), obtained by administering a composition comprising a synthetic peptide consisting of the amino acid sequence of SEQ ID NO: 3 and keyhole limpet hemocyanin (KLH) to a sixth rabbit multiple times. DETAILED DESCRIPTION OF THE INVENTION

[0015] Preferred embodiments of the technology disclosed herein are described below. Matters necessary for implementing the technology disclosed herein (e.g., general matters relating to methods for chemically synthesizing peptides and preparation of compositions) other than those specifically mentioned in this specification (e.g., the primary structure and chain length of the synthetic peptides disclosed herein) can be understood as design matters of a person skilled in the art based on conventional techniques in the fields of cell engineering, physiology, medicine, pharmacology, organic chemistry, biochemistry, genetic engineering, protein engineering, molecular biology, genetics, etc. The technology disclosed herein can be implemented based on the contents disclosed herein and the common general technical knowledge in the relevant fields. In the following description, where appropriate, amino acids will be represented by one-letter symbols (except three-letter symbols in the sequence listing) in accordance with the nomenclature for amino acids set forth in the IUPAC-IUB guidelines. Additionally, the entire contents of all documents cited herein are incorporated herein by reference.

[0016] As used herein, the term "synthetic peptide" refers to a peptide fragment whose peptide chain does not exist stably in nature as an independent chain, but is produced by artificial chemical synthesis or biosynthesis (i.e., production based on genetic engineering) and can exist stably in a given system (e.g., a composition containing an adjuvant). Here, the term "peptide" refers to an amino acid polymer having multiple peptide bonds, and is not limited by the number of amino acid residues contained in the peptide chain, but typically refers to a polymer having a relatively small molecular weight, such as a total of approximately 100 or less amino acid residues (preferably 80 or less, more preferably 70 or less, for example 60 or less). In addition, the term "amino acid residue" as used herein includes the N-terminal amino acid and the C-terminal amino acid of a peptide chain, unless otherwise specified. Furthermore, as used herein, the term "conjugate" refers to a product (construct) in which a carrier protein and other components (crosslinker, Cys residue) are covalently linked to the synthetic peptide, and is included in the compositions disclosed herein. In the amino acid sequences described herein, the left side is always the N-terminus and the right side is always the C-terminus.

[0017] The synthetic peptide disclosed herein contains the predicted signal peptide sequence of the protein encoded by the SARS-CoV-2 genome published on NCBI, i.e., the synthetic peptide has the following amino acid sequence: (1) MKFLVFLGIITTVAA (SEQ ID NO: 1); (2) MFVFLVLLPLVSSQC (SEQ ID NO: 2); (3) MKIILFLALITLATC (SEQ ID NO: 3); contains one of the following:

[0018] The amino acid sequence of SEQ ID NO: 1 corresponds to a predicted signal peptide consisting of a total of 15 amino acid residues derived from the ORF8 protein of SARS-CoV-2. The amino acid sequence of SEQ ID NO: 2 corresponds to a predicted signal peptide consisting of a total of 15 amino acid residues derived from the surface glycoprotein, a protein of SARS-CoV-2. The amino acid sequence of SEQ ID NO: 3 corresponds to a predicted signal peptide consisting of a total of 15 amino acid residues derived from the ORF7a protein, a protein of SARS-CoV-2. Because these amino acid sequences are unique to SARS-CoV-2, they are easily recognized as foreign substances (antigens) by mammals and other organisms. Administering the above synthetic peptides to mammals and other organisms can stimulate the production of antibodies against these amino acid sequences.

[0019] Furthermore, as long as a synthetic peptide contains an amino acid sequence of any one of SEQ ID NOS: 1 to 3 that is recognized as an antigen by at least one mammal, the synthetic peptide may contain a sequence other than the amino acid sequence of any one of SEQ ID NOS: 1 to 3. For example, the synthetic peptide may contain, without limitation, an amino acid sequence encoded adjacent to and contiguously with the C-terminus of the predicted signal peptide of the above-mentioned ORF8 protein at the C-terminus of the amino acid sequence of SEQ ID NOS: 1, or an amino acid sequence encoded adjacent to and contiguously with the C-terminus of the predicted signal peptide of the above-mentioned surface glycoprotein at the C-terminus of the amino acid sequence of SEQ ID NOS: 2. Similarly, the amino acid sequence of SEQ ID NOS: 3 may contain an amino acid sequence encoded adjacent to and contiguously with the C-terminus of the predicted signal peptide of the above-mentioned ORF7a protein at the C-terminus of the amino acid sequence of SEQ ID NOS: 3. Further examples include sequences in which a Cys residue is added to the N- or C-terminus of the amino acid sequence of SEQ ID NOS: 1, such as the amino acid sequences of SEQ ID NOS: 4 and 5. The amino acid sequence of SEQ ID NO: 4 is a sequence in which a Cys residue is added to the C-terminus of a predicted signal peptide (SEQ ID NO: 1) consisting of a total of 15 amino acid residues derived from the ORF8 protein of SARS-CoV-2. The amino acid sequence of SEQ ID NO: 5 is a sequence in which a Cys residue is added to the N-terminus of a predicted signal peptide (SEQ ID NO: 1) consisting of a total of 15 amino acid residues derived from the ORF8 protein of SARS-CoV-2. By adding a Cys residue to the N-terminus or C-terminus of the amino acid sequence of SEQ ID NO: 1, as in SEQ ID NO: 4 and SEQ ID NO: 5, the thiol group (SH group) contained in the side chain of the Cys residue can be reacted with a maleimide that may be contained in a crosslinking agent, thereby easily bonding the synthetic peptide to the crosslinking agent.

[0020] The total number of amino acid residues of the synthetic peptides disclosed herein is suitably 20 or less. If the number is greater than this, there is a possibility that, when administered to an organism such as a mammal, antibodies may be produced that have an epitope other than the amino acid sequence of any of SEQ ID NOS: 1 to 3. Furthermore, from the perspective of limiting the epitope site, the total number of amino acid residues may be 19 or less, 18 or less, 17 or less, or 16 or less, or the synthetic peptide may consist solely of the amino acid sequence of any of SEQ ID NOS: 1 to 3.

[0021] The N-terminal amino acid group of the synthetic peptides disclosed herein may be N-acetylated, which can improve the solubility of the synthetic peptide.

[0022] The synthetic peptides disclosed herein can be easily produced according to common chemical synthesis methods. For example, either a conventional solid-phase synthesis method or a liquid-phase synthesis method may be employed. Solid-phase synthesis using Boc (t-butyloxycarbonyl) or Fmoc (9-fluorenylmethoxycarbonyl) as the amino group-protecting group is preferred.

[0023] Alternatively, synthetic peptides can be biosynthesized using genetic engineering techniques. That is, a polynucleotide (typically DNA) with a nucleotide sequence (including an ATG initiation codon) encoding the amino acid sequence of the desired synthetic peptide is synthesized. Then, a recombinant vector containing an expression gene construct consisting of the synthesized polynucleotide (DNA) and various regulatory elements (including promoters, ribosome binding sites, terminators, enhancers, and various cis-elements that control expression levels) for expressing the amino acid sequence in host cells is constructed according to the host cell type. This recombinant vector is introduced into a predetermined host cell (e.g., yeast, insect cell, or plant cell) using a common technique, and the host cell or a tissue or individual containing the cell is cultured under predetermined conditions. This allows the target peptide to be expressed and produced intracellularly. The peptide is then isolated from the host cell (or from the culture medium if secreted), and the target antiviral peptide can be obtained by, if necessary, refolding, purification, or the like. The method for constructing a recombinant vector and the method for introducing the constructed recombinant vector into a host cell may be any method conventionally used in the relevant field, and since such methods do not particularly characterize the technology disclosed herein, detailed explanations thereof will be omitted.

[0024] Alternatively, a template DNA for a cell-free protein synthesis system (i.e., a synthetic gene fragment containing a nucleotide sequence encoding the amino acid sequence of a synthetic peptide) can be constructed, and various compounds necessary for peptide synthesis (ATP, RNA polymerase, amino acids, etc.) can be used to synthesize the desired polypeptide in vitro using a so-called cell-free protein synthesis system. Regarding cell-free protein synthesis systems, for example, Shimizu et al. (Shimizu et al., Nature Biotechnology, 19, 751-755 (2001)) and Madin et al. (Madin et al., Proc. Natl. Acad. Sci. USA, 97(2), 559-564 (2000)) are useful references. Based on the technology described in these papers, many companies were already contracted to produce polypeptides at the time of filing this application, and cell-free protein synthesis kits (available, for example, from Cell Free Science Co., Ltd. in Japan) were commercially available.

[0025] Single- or double-stranded polynucleotides containing a nucleotide sequence encoding the synthetic peptides disclosed herein and / or a nucleotide sequence complementary to said sequence can be easily produced (synthesized) by conventional methods. Specifically, by selecting codons corresponding to each amino acid residue constituting a designed amino acid sequence, a nucleotide sequence corresponding to the amino acid sequence of the synthetic peptide can be easily determined and provided. Once the nucleotide sequence is determined, a polynucleotide (single-stranded) corresponding to the desired nucleotide sequence can be easily obtained using a DNA synthesizer or the like. Furthermore, the obtained single-stranded DNA can be used as a template to obtain the desired double-stranded DNA by various enzymatic synthesis methods (typically PCR). Furthermore, the polynucleotide may be in the form of DNA or RNA (e.g., mRNA). DNA may be provided as either double-stranded or single-stranded. When provided as a single-stranded DNA, it may be the coding strand (sense strand) or the non-coding strand (antisense strand) of a complementary sequence. The polynucleotides thus obtained can be used as materials for constructing recombinant genes (expression cassettes) for producing synthetic peptides in various host cells or in cell-free protein synthesis systems, as described above.

[0026] The synthetic peptides disclosed herein are recognized as antigens by at least one mammal and can promote the production of antibodies (IgM, IgG, etc.) that recognize the synthetic peptides. The synthetic peptides may be in the form of a salt, as long as they are recognized as antigens by at least one mammal. For example, acid addition salts of the peptides can be used, which can be obtained by adding commonly used inorganic or organic acids according to standard methods. Alternatively, other salts (e.g., metal salts) may be used, as long as they are recognized as antigens by at least one mammal. The "peptide" referred to in this specification and claims encompasses such salt forms.

[0027] The synthetic peptides disclosed herein may also be provided as part of a composition comprising a carrier protein, i.e., a composition comprising a moiety recognized as an antigen by at least one mammal, the composition comprising the following amino acid sequence: (1) MKFLVFLGIITTVAA (SEQ ID NO: 1); (2) MFVFLVLLPLVSSQC (SEQ ID NO: 2); (3) MKIILFLALITLATC (SEQ ID NO: 3); and a carrier protein.

[0028] The type of carrier protein is not particularly limited, but for example, any of KLH (Keyhole limpet hemocyanin), OVA (ovalbumin), BSA (Bovine Serum Albumin), etc., which have antigenic stimulation, can be suitably used.

[0029] In a preferred embodiment of the composition disclosed herein, a carrier protein is bound to the C-terminus or N-terminus of the synthetic peptide via a specific crosslinking agent. The crosslinking agent may have homobifunctional or heterobifunctional groups, which are commonly used for crosslinking peptides. Preferred reactive functional groups for the crosslinking agent include various amine-containing compounds (e.g., primary amines), thio or other sulfur-containing groups, carboxyl, and hydroxyl. Specific examples of reactive functional groups include N-hydroxysuccinimide-activated esters (NHS esters), maleimides, azides, and iodoacetamides. The NHS esters react efficiently with amines at neutral or higher pHs to form highly stable amide bonds. Furthermore, the maleimides react selectively with SH groups, exhibiting superior reactivity with SH groups compared to amines at neutral pH.

[0030] Suitable cross-linking agents having homobifunctional groups include N-hydroxysuccinimide (NHS), disuccinimidyl suberate (DSS), bis(sulfosuccinimidyl)suberate (BS3), dithiobis(succinimidyl propionate) (DSP), dithiobis(sulfosuccinimidyl propionate) (DTSSP), ethylene glycol bis(succinimidyl succinate) (EGS), ethylene glycol bis(sulfosuccinimidyl succinate) (sulfo-EGS), disuccinimidyl tartrate (DST), disulfosuccinimidyl tartrate (sulfo-DST), etc. In particular, bis(sulfosuccinimidyl)suberate (BS3) 3 ) can be preferably used.

[0031] Preferred examples of crosslinkers having heterobifunctional groups include polyethylene glycol (PEG) derivatives such as O-[N-(3-maleimidopropionyl)aminoethyl]-O'-[3-(N-succinimidyloxy)-3-oxopropyl]heptacosaethylene glycol, m-maleimidobenzoyl-N-hydroxysuccinimide ester (MBS), succinimidyl 4-[maleimidophenyl]butyrate (SMPB), succinimidyl 4-(maleimidomethyl)cyclohexane-1-carboxylate (SMCC), N-(γ-maleimidobutyloxy)succinimide ester (GMBS), m-maleimidopropionic acid-N-hydroxysuccinimide ester (MPS), and N-succinimidyl(4-iodoacetyl)aminobenzoate (SIAB). PEGs with NHS ester and maleimide reactive functional groups are particularly preferred. PEG not only improves solubility in water and human body fluids, but also exhibits little immunogenicity. Furthermore, PEG is not easily degraded in human body fluids. Therefore, conjugates with PEG-containing crosslinkers can be suitably used as antigens for administration to living organisms.

[0032] The position at which the synthetic peptide is bound to the cross-linking agent is not particularly limited, but is preferably the N-terminus or C-terminus, which places the synthetic peptide further away from the surface of the carrier protein and can improve the probability of producing antibodies that target the synthetic peptide as an epitope. Although not particularly limited, when a cross-linking agent is attached to the N-terminus of a synthetic peptide, if the synthetic peptide sequence contains no amino groups other than the N-terminus amino group (i.e., no Lys residues), for example, an NHS ester contained in the cross-linking agent can be efficiently reacted with the N-terminal amino group of the synthetic peptide. Furthermore, when a Cys residue is present only at the N-terminus or C-terminus of a synthetic peptide, the thiol group of the Cys residue can be selectively reacted with the maleimide contained in the cross-linking agent, so the linking position of the cross-linking agent can be the N-terminus or C-terminus. When a Cys residue is not present, such as in the amino acid sequence shown in SEQ ID NO: 1, a Cys residue may be added to the N-terminus or C-terminus. This allows a cross-linking agent having a maleimide to be attached to the N-terminus or C-terminus.

[0033] A synthetic peptide or composition comprising the amino acid sequence set forth in any of SEQ ID NOs: 1 to 3 disclosed herein can be used to produce anti-SARS-CoV-2 antibodies. It is particularly preferable to use a synthetic peptide or composition comprising the amino acid sequence set forth in SEQ ID NO: 1. The synthetic peptide or composition comprising the amino acid sequence set forth in SEQ ID NO: 1 is particularly highly antigenic to mammals and can therefore be used to produce antibodies with higher antibody titers. A typical example of a method for using the synthetic peptides and compositions disclosed herein is a vaccine, which can be used for immunization or treatment against SARS-CoV-2. Another typical example is administering the synthetic peptides and compositions as antigens to an organism such as a mammal to produce antibodies that recognize the synthetic peptide. Mammals used for immunization include laboratory animals such as guinea pigs, rats, mice, rabbits, and sheep. For obtaining monoclonal or polyclonal antibodies, rats, mice, and rabbits are preferred. Immunization may be performed by any route, including subcutaneous, intraperitoneal, intravenous, intramuscular, and intradermal administration. Subcutaneous, intradermal, intraperitoneal, and intravenous injections are preferred. The immunization interval and immunization dose are not particularly limited, and various methods can be used. For example, a commonly used method involves immunizing the animal approximately 2 to 10 times at 2-week intervals, followed by in vivo sampling approximately 1 to 5 times, preferably approximately 2 to 7 days after the final immunization. The immunization dose does not necessarily require a specific amount of peptide to be administered, but it is preferable to use, for example, approximately 50 to 300 μg per rabbit. Furthermore, although not particularly limited, initially, a conjugate comprising a synthetic peptide and a carrier protein is thoroughly mixed with an adjuvant (e.g., FCA (Freund's complete adjuvant)) and administered intraperitoneally to a mouse, allowing the cells to grow. At two-week intervals, the conjugate is again thoroughly mixed with an adjuvant (e.g., FCA or FIA (Freund's incomplete adjuvant)) and administered intraperitoneally, and the ascites fluid is collected, thereby efficiently obtaining monoclonal or polyclonal antibodies with high antibody titers against the synthetic peptide. Purification of the desired monoclonal or polyclonal antibodies can be performed by known methods such as affinity chromatography, ion exchange chromatography, gel filtration, and ammonium sulfate precipitation.

[0034] The synthetic peptides and compositions disclosed herein may contain various pharmaceutically acceptable carriers depending on the form of use, as long as the synthetic peptide is recognized as an antigen by at least one mammal. For example, carriers commonly used in peptide-based drugs as diluents, excipients, etc. may be used. Although the carrier may vary depending on the intended use and form of the synthetic peptide and composition containing the carrier, typical examples of the carrier include water, physiological buffer solutions, and various organic solvents. It may also be an aqueous solution of an appropriate concentration of alcohol (such as ethanol), glycerol, or a non-drying oil such as olive oil. Alternatively, liposomes may be used. Additional components that may be contained in the composition include various fillers, extenders, binders, humectants, surfactants, dyes, fragrances, adjuvants, and the like. Typical forms of the synthetic peptides and compositions containing the above carriers include solutions, suspensions, emulsions, aerosols, foams, granules, powders, tablets, capsules, ointments, aqueous gels, etc. Furthermore, for use in injections, etc., they can also be made into lyophilized or granulated products that can be dissolved in physiological saline or an appropriate buffer solution (e.g., PBS) immediately before use to prepare a medicinal solution. The process for preparing various forms of compositions (drugs) using synthetic peptides (main components) and various carriers (secondary components) may be in accordance with conventionally known methods, and since such manufacturing methods do not characterize the technology disclosed herein, detailed explanations will be omitted. A source of detailed information on formulations is, for example, Comprehensive Medicinal Chemistry, edited by Corwin Hansch, published by Pergamon Press (1990). The entire contents of this book are incorporated herein by reference.

[0035] Below, several test examples relating to the technology disclosed herein will be described, but it is not intended that the technology disclosed herein be limited to those shown in these test examples.

[0036] [Table 1]

[0037] <Peptide synthesis> The peptides consisting of the amino acid sequences shown in Table 1 were each produced using a commercially available peptide synthesizer. Sample 1 is a synthetic peptide having the amino acid sequence shown in SEQ ID NO: 4, which is a synthetic peptide in which a Cys residue has been added to the C-terminus of the amino acid sequence of SEQ ID NO: 1. Sample 2 is a synthetic peptide having the amino acid sequence shown in SEQ ID NO:2. Sample 3 is a synthetic peptide having the amino acid sequence shown in SEQ ID NO:3.

[0038] The peptides of Samples 1 to 3 were all synthesized by solid-phase synthesis (Fmoc method) using a commercially available peptide synthesizer according to the manual. Since the manner of use of the peptide synthesizer itself does not characterize the technology disclosed herein, a detailed explanation will be omitted. The amino groups of the N-terminal amino acids of Samples 1 and 2 were acetylated.

[0039] <Preparation of conjugates using peptides> Conjugates were prepared by coupling the synthetic peptide of Sample 1 to the carrier protein keyhole limpet hemocyanin (KLH) using a crosslinker: polyethylene glycol (PEG) bearing a maleimide at one end and an NHS ester at the other. The coupling reaction itself is not a defining feature of the technology disclosed herein, and therefore will not be described in detail. Briefly, the crosslinker was attached to the surface of KLH by reacting the amino group of KLH with the NHS ester of the crosslinker. The maleimide of the crosslinker was then reacted with the thiol group of the Cys residue at the C-terminus of the synthetic peptide, resulting in the formation of conjugates in which each synthetic peptide was linked to KLH via PEG. Conjugates were also prepared for the synthetic peptides of Samples 2 and 3 using the same method as for Sample 1.

[0040] <Antibody production using the conjugate as an antigen> The conjugate of Sample 1 was administered to two Japanese white rabbits (hereinafter, when distinguishing between individual rabbits, these rabbits will be referred to as the first rabbit and the second rabbit, respectively) to produce antibodies against the synthetic peptide of Sample 1. Blood samples were also taken from the rabbits as needed for the evaluation of antibody titers, as described below. Specifically, on day 1 (hereinafter, the number of days is indicated relative to this day), a 5 ml sample of blood was taken before the administration of the conjugate of Sample 1, and preimmune serum was prepared. On the same day, a composition containing 0.15 mg of the conjugate of Sample 1 mixed with an equal volume of FCA (Freund's complete adjuvant) was administered intradermally to the rabbits (first intradermal administration). On day 15, a composition containing 0.3 mg of the conjugate of Sample 1 mixed with an equal volume of FCA was administered intradermally to the rabbits (second administration). On day 29, a composition containing 0.3 mg of Sample 1 conjugate mixed with an equal volume of FCA was administered intradermally to the rabbit (third administration). On day 36, 5 ml of blood was collected from the rabbit to prepare the first serum for evaluation. On day 43, a composition containing 0.3 mg of Sample 1 conjugate mixed with an equal volume of FCA was administered intradermally to the rabbit (fourth administration). On day 50, 5 ml of blood was collected from the rabbit to prepare the second serum for evaluation. On day 57, a composition containing 0.3 mg of Sample 1 conjugate mixed with an equal volume of FCA was administered intradermally to the rabbit (fifth administration). On day 64, 5 ml of blood was collected from the rabbit to prepare the third serum for evaluation. On day 71, a composition containing 0.3 mg of Sample 1 conjugate mixed with an equal volume of FCA was administered intradermally to the rabbit (sixth administration). On day 78, whole blood was collected from the rabbits, and whole blood serum was prepared. The prepared pre-immune serum, sera for evaluation after the first to third rounds, and whole blood serum were stored with sodium azide added to a concentration of 0.09%.

[0041] The conjugates of Samples 2 and 3 were each administered to two rabbits in the same manner as the conjugate of Sample 1, and pre-immune serum, sera for evaluation after the first to third rounds, and serum at the time of whole blood collection were prepared. In order to distinguish between individual rabbits, the two rabbits administered with the conjugate of Sample 2 were designated the third rabbit and the fourth rabbit, respectively, and the two rabbits administered with the conjugate of Sample 3 were designated the fifth rabbit and the sixth rabbit, respectively.

[0042] <Evaluation of serum antibody titers> Antibody titers of pre-immune serum, sera used for evaluation at the first to third rounds, and serum collected at the time of total blood collection were evaluated by ELISA (Enzyme-Linked ImmunoSorbent Assay). First, the synthetic peptide of Sample 1 was dissolved in PBS (Phosphate-Buffered Saline) at pH 7.2 to a concentration of 5 μg / ml, and 100 μl of this solution was added to each well of the immunoplate and incubated at room temperature for 2 hours. Next, the liquid in each well was removed, and the wells were washed three times with PBS (washing solution) containing 0.2% Tween-20 (Polyoxyethylene(20) Sorbitan Monolaurate, Fujifilm Wako Pure Chemical Industries, Ltd.). The washing solution was then added to each well and incubated overnight at 4°C. After incubation, the preimmune serum, sera for evaluation from Sample 1, and serum from whole blood collection were diluted 1000-fold, 2000-fold, 4000-fold, 8000-fold, 16000-fold, 32000-fold, 64000-fold, and 128000-fold with PBS containing 0.05% Tween-20 (diluent). After removing the wash solution from each well, 100 μl of each dilution was added to a separate well and incubated at 37°C for 30 minutes, followed by an additional 15 minutes at room temperature. After removing the solution from each well, the plate was washed three times with the wash solution. 100 μl of goat f(ab)'2 anti-rabbit IgG HRP conjugate (MP Biomedicals, LLC - Cappel Products) diluted 5000-fold with the diluent was added to each well. The plate was then incubated at 37°C for 30 minutes, followed by an additional 15 minutes at room temperature. After removing the liquid from each well, the wells were washed three times with the above-mentioned washing solution. 100 μl of a substrate solution prepared by dissolving 10 mg of OPD (O-phenylene diamin, SIGMA) in 25 ml of citrate-phosphate buffer and adding 5 μl of hydrogen peroxide was added to each well. Color development was then allowed to proceed at room temperature for 20 minutes. The color development was stopped by adding 100 μl of 1 M sulfuric acid to each well, and the absorbance at 490 nm of each well was measured using an Immuno Reader. The results are shown in Figures 1 to 4. Figures 1 and 2 show the results of the ELISA for the serum obtained from the first rabbit, and Figures 3 and 4 show the results of the ELISA for the serum obtained from the second rabbit.

[0043] The antibody titers of the pre-immune sera, the sera used for evaluation after the first to third rounds, and the serum collected at the time of whole blood collection for Samples 2 and 3 were evaluated in the same manner as in the evaluation of the antibody titer of the serum for Sample 1. The results are shown in Figures 5 to 12. Figures 5 and 6 show the results of ELISA for the serum obtained from the third rabbit, and Figures 7 and 8 show the results of ELISA for the serum obtained from the fourth rabbit. Figures 9 and 10 show the results of ELISA for the serum obtained from the fifth rabbit, and Figures 11 and 12 show the results of ELISA for the serum obtained from the sixth rabbit. In this specification, when the absorbance at 490 nm exceeds 0.5, it is evaluated as ensuring the antibody titer (having a good antibody titer). Furthermore, when the absorbance exceeds the upper limit of measurement of the Immno Reader (when the absorbance exceeds 3.0), it is indicated as an absorbance of 3.0.

[0044] As shown in Figures 1 and 2, repeated administration of the conjugate of Sample 1 to the first rabbit increased the antibody titer against the synthetic peptide of Sample 1, reaching an absorbance far exceeding 0.5, confirming that serum containing IgG antibodies with sufficient antibody titer could be obtained. As shown in Figures 3 and 4, repeated administration of the conjugate of Sample 1 to the second rabbit increased the antibody titer against the synthetic peptide of Sample 1, reaching an absorbance far exceeding 0.5, confirming that serum containing IgG antibodies with sufficient antibody titer could be obtained.

[0045] As shown in Figures 5 and 6, repeated administration of the conjugate of Sample 2 to the third rabbit failed to produce serum with a guaranteed antibody titer against the synthetic peptide of Sample 2. However, as shown in Figures 7 and 8, repeated administration of the conjugate of Sample 2 to the fourth rabbit resulted in serum with an absorbance of over 0.5. This confirmed that administration of the conjugate of Sample 2 could produce serum containing IgG antibodies with a guaranteed antibody titer against the synthetic peptide of Sample 2.

[0046] As shown in Figures 9 and 10, repeated administration of the conjugate of Sample 3 to the fifth rabbit failed to produce serum with a guaranteed antibody titer against the synthetic peptide of Sample 3. However, as shown in Figures 11 and 12, repeated administration of the conjugate of Sample 3 to the sixth rabbit resulted in an absorbance of far more than 0.5 for the serum at the time of whole blood collection. This confirmed that administration of the conjugate of Sample 3 could produce serum containing IgG antibodies with a guaranteed antibody titer against the synthetic peptide of Sample 3.

[0047] Comparing these results, it was found that among the amino acid sequences of Samples 1 to 3, administration of a conjugate having a synthetic peptide consisting of the amino acid sequence of Sample 1 to rabbits resulted in the production of antibodies with particularly high antibody titers. This indicates that the use of the amino acid sequence of SEQ ID NO: 1 makes it possible to produce antibodies with higher antibody titers.

[0048] While specific examples of the technology disclosed herein have been described above in detail, these are merely examples and do not limit the scope of the claims. The technology described in the claims includes various modifications and alterations of the specific examples exemplified above. [Industrial Applicability]

[0049] As described above, administration of the synthetic peptides and compositions (conjugates) disclosed herein to mammals can produce high-titer antibodies that recognize the synthetic peptides in the mammals. Therefore, the synthetic peptides and compositions provided by the present teachings can be used as vaccines against SARS-CoV-2. The produced antibodies can also be used as antiviral agents against SARS-CoV-2 and can be used for SARS-CoV-2 detection, labeling, and other purposes. [Sequence List Free Text]

[0050] SEQ ID NOs: 4-5 Synthetic peptides

Claims

1. A synthetic peptide recognized as an antigen by at least one mammal, comprising the amino acid sequence: MKFLVFLGIITTVAA (SEQ ID NO: 1), The total number of amino acid residues is 20 or less. Synthetic peptides.

2. A composition comprising a synthetic peptide recognized as an antigen by at least one mammal and a carrier protein, The synthetic peptide is comprising the amino acid sequence: MKFLVFLGIITTVAA (SEQ ID NO: 1), The total number of amino acid residues is 20 or less. composition.

3. The composition described in claim 2, wherein the carrier protein is bound to the C-terminal or N-terminal side of the synthetic peptide via a specified crosslinking agent.

4. 1. A method for producing an anti-SARS-CoV-2 antibody, comprising: Preparing a synthetic peptide that is recognized as an antigen by at least one mammal, the synthetic peptide comprising the amino acid sequence MKFLVFLGIITTVAA (SEQ ID NO: 1) and having a total of 20 or less amino acid residues, or a composition comprising the synthetic peptide and a carrier protein; and administering said synthetic peptide or said composition to said mammal (excluding a human); A method for producing an antibody, comprising:

5. The antibody production method described in Claim 4, wherein in the composition, the carrier protein is bound to the C-terminal or N-terminal side of the synthetic peptide via a predetermined crosslinking agent.

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