771 results about "Base sequence" patented technology

Among other things, the present disclosure provides oligonucleotides, compositions, and methods thereof. Among other things, the present disclosure encompasses the recognition that structural elements of oligonucleotides, such as base sequence, chemical modifications (e.g., modifications of sugar, base, and / or internucleotidic linkages) or patterns thereof, conjugation with additional chemical moieties, and / or stereochemistry [e.g., stereochemistry of backbone chiral centers (chiral internucleotidic linkages)], and / or patterns thereof, can have significant impact on oligonucleotide properties and activities, e.g., knockdown ability, stability, delivery, etc. In some embodiments, the oligonucleotides decrease the expression, activity and / or level of a C9orf72 gene, including but not limited to, one comprising a repeat expansion, or a gene product thereof. In some embodiments, the present disclosure provides methods for treatment of diseases using provided oligonucleotide compositions, for example, in treatment of C9orf72-related disorders.

The invention belongs to the technical field of genetic engineering, and particularly relates to recombinant collagen based on engineering bacterium expression and a preparation method thereof, and the recombinant collagen is formed by connecting repetitive units derived from human III type collagen in series for three times; the invention also discloses a base sequence of the coding gene of the recombinant collagen, efficient expression and accurate folding of target protein are realized through genetic modification of engineering bacteria, a light-operated dynamic folding process and an orthogonal purification strategy, and cascade purification of a His6-SUMO tag and an intein-CBD module is utilized to obtain the recombinant collagen. The product purity and the native conformation retention rate are remarkably improved, and the technical problems that hydroxyproline depends on exogenous addition, the folding controllability is poor and the purification efficiency is low in a traditional process are solved.

The invention relates to the technical field of DNA fragment data processing, in particular to a DNA fragmentation gene detection data processing method based on artificial intelligence. Segmenting the DNA fragmentation detection data into a plurality of local data blocks, and executing continuous homology analysis on each local data block; dynamic weights are distributed to annular and branch structures in the multi-scale topological feature matrix by using an attention mechanism; extracting a base correlation mode of a base sequence in the DNA fragmentation detection data through one-dimensional convolution to obtain sequence features; performing tensor splicing on the weighted topological features and the sequence features in a hidden space; performing coarse-grained classification on the fused high-order feature vectors through a multi-layer perceptron, and outputting a preliminary classification result; and constructing a lightweight neural network sub-module based on the preliminary classification result to obtain a final classification result, thereby effectively improving the accuracy and interpretability of the classification result.

The present disclosure features useful oligonucleotide compositions and methods related thereto. The present disclosure encompasses the recognition that structural elements of oligonucleotides, such as base sequence, chemical modifications (e.g. modifications of sugar, base and / or internucleotide linkages) or patterns thereof, can have a significant impact on oligonucleotide properties and activities. The present disclosure also provides methods to treat disorders for which deamination of an adenosine in an mRNA produces a therapeutic result, e.g., in a subject in need thereof.

The present invention provides: a sludge decomposing bacterium having a 16S rRNA gene comprising a base sequence having 97% or more identity with the base sequence recorded in sequence number 1, a bacterium having a 16S rRNA gene comprising a base sequence having a base variation number of 2 bases or less relative to the base sequence recorded in sequence number 1 and having target microorganism decomposing ability, and a microbial preparation for decomposing a target microorganism comprising the bacterium (a1), wherein the bacterium (a1) is a bacterium having a 16S rRNA gene comprising a base sequence having 90% or more identity with the base sequence recorded in sequence number 1.

The invention discloses SSR (simple sequence repeat) multiple PCR (polymerase chain reaction) primers for paternity test of grass carp and application of the SSR multiple PCR primers. The primers comprise 16 pairs of specific primers, and base sequences of the 16 pairs of specific primers are respectively shown as SEQ ID NO.1-32 in sequence. The invention further discloses a fish paternity test kit comprising the SSR multiple PCR primer, an SSR multiple fluorescent PCR method for grass carp paternity test and application of the SSR multiple PCR primer, the kit or the method in grass carp paternity test. According to the kit, 16 pairs of specific SSR primers, multiple fluorescent PCR and a universal amplification primer technology are combined, 16 sites can be detected at a time, universal primers can be repeatedly used, and compared with simple single-site detection, the efficiency is improved, and the cost is reduced; the microsatellite loci contained in the invention are 3-6 basic groups, the allele size interpretation is more accurate, and the accuracy of genotype data is improved.

The invention belongs to the technical field of plant genetic engineering, and particularly relates to an SCRE10 gene for improving rice disease resistance and application of the SCRE10 gene, the base sequence of the SCRE10 gene is shown as SEQ ID NO.1, and the amino acid sequence of the SCRE10 gene is shown as SEQ ID NO.2. Through construction of a dexamethasone induced expression SCRE10 transgenic rice plant, it is found that the transgenic rice can significantly induce PR gene expression and active oxygen outbreak, and the resistance of rice to false smut and bacterial leaf blight can be improved. The invention proves that heterologous inducible expression of the Ustilaginoidea virens SCRE10 gene has the function of positively regulating the disease resistance of the rice, and the SCRE10 gene can be used for improving the disease resistance of the rice, which is of great significance to the creation of disease-resistant germplasm of the rice.

The invention relates to a variation identification method of a nanopore single molecule sequencing current signal, which comprises the following steps of: dividing an original current signal generated by nanopore single molecule sequencing into continuous time periods according to a sequence that a basic group passes through a nanopore, calculating an average signal rhythm, constructing a standard time rhythm when a standard basic group sequence passes through the nanopore, and identifying the variation of the nanopore single molecule sequencing current signal. Comparing the offset difference between the actually measured average signal rhythm and the standard time rhythm, wherein a difference salient region is a potential variation region; current signals of front and back neighborhoods are extracted, a current signal disturbance difference value is quantized, and a region with the disturbance difference value having obvious direction asymmetry characteristics is a variation region to be confirmed; the range is expanded, current signals are extracted, disturbance intensity is calculated, and when the disturbance intensity presents a gradually-enhanced or gradually-weakened continuous change trend, it is judged that the variation area to be confirmed has physical rationality; and determining a theoretical current signal by using the corresponding non-variation sequence, comparing the theoretical current signal with an actually measured current signal, calculating a current difference, and determining that the current difference exceeds a normal difference range as a real variation region.

The present invention relates to a method for producing a transgenic plant having an increased saponin content. It is confirmed that a nucleotide having a base sequence represented by SEQ ID NO: 1 or 2 derived from ginseng Panax ginseng increases ginsenoside accumulation by regulating the expression of genes involved in ginsenoside biosynthesis. Therefore, the method can be advantageously applied to the production of transgenic plants with increased saponin content.

The invention relates to the technical field of coding and decoding, and discloses a DNA storage coding and decoding method and device, electronic equipment and a storage medium, and the method comprises the steps: carrying out the information filling of to-be-coded data, and obtaining a target binary sequence; encoding and mapping the target binary sequence to obtain a DNA base sequence; identifying a coding error mode of the to-be-coded data according to the DNA base sequence; and according to the coding error mode, selecting a corresponding decoding algorithm to decode the DNA base sequence to obtain decoding data. Through the implementation of the invention, data conversion and information filling are performed on the to-be-coded data, so that the length of the to-be-coded data can meet the length requirement of the polarization code; the coding error mode corresponding to the DNA base sequence is identified for decoding, the decoding accuracy can be effectively improved through different coding error modes, and lossless compiling of the to-be-coded data is realized.

The invention provides a modified nucleic acid aptamer and application thereof. On the first aspect, the invention provides a modified nucleic acid aptamer, the nucleic acid aptamer is a nucleic acid aptamer Sgc8, and the nucleotide sequence of the nucleic acid aptamer Sgc8 is SEQ ID NO: 1; one end of the nucleic acid aptamer is extended through a polynucleotide fragment, and fluorescent molecular modification is carried out on the extended tail end of the polynucleotide fragment; the nucleotide sequence of the polynucleotide fragment is TTTTT. According to the invention, the base sequence with a certain length is added between the fluorescent molecule and the aptamer, so that the interference of the fluorescent molecule on an aptamer recognition structural domain can be effectively avoided, and the recognition and imaging efficiency is improved.

The present invention particularly relates to the technical field of data storage, and provides a data encryption method based on DNA encoding, a data decryption method based on DNA encoding, an intelligent terminal, and a medium. A solution comprises: encrypting acquired data to be encoded to obtain encrypted data to be encoded; on the basis of a pre-constructed DNA encoding table, performing DNA encoding on each byte of said encrypted data to obtain an initial base sequence, the DNA encoding table being constructed from four-base units and five-base units; and using a preset DNA sequence structure optimization rule to perform chaotic mapping adjustment and rearrangement on the initial base sequence to obtain an encrypted DNA sequence. According to the solution, the GC content in the encrypted DNA sequence can be kept in a balanced state, and the information density of the encrypted data is increased, such that the encryption effect is effectively improved, thereby reducing a storage space occupied by data to be encoded, improving the security and attack resistance of the data to be encoded, and thus guaranteeing the stability of the encrypted DNA sequence.

The invention belongs to the field of gene engineering, and particularly relates to an ecdysone receptor gene LvECR and application thereof. The base sequence of the ecdysone receptor gene LvECR is as shown in SEQ ID NO: 1. The amino acid sequence of the protein encoded by the LvECR gene is as shown in SEQ ID NO: 2. The invention also discloses an application of the ecdysone receptor gene LvECR in inhibition of pathogenic vibrio infection. It is verified for the first time that the prawn ecdysone receptor gene LvECR plays an important role in prawn acute hepatopancreatic necrosis, disease occurrence can be aggravated by inhibiting expression of the coding gene of the prawn ecdysone receptor gene LvECR, disease symptoms can be reduced by injecting in-vitro recombinant protein of the factor, and the huge application potential of the prawn ecdysone receptor gene LvECR in disease prevention and control is shown.

The invention discloses a DNA synthesis method which comprises the following steps: processing an initial substrate according to a preset strategy to obtain a target substrate with a Mark pattern and a plurality of reaction sites, and adjusting the positions of the target substrate and an ink-jet printing device through the Mark pattern, so that the working directions of a reaction unit array and the device are consistent, and the subsequent operation accuracy is ensured; deprotecting the reaction sites to generate active groups; sequentially spraying a target monomer solution and an activator solution into the reaction sites of the preset area after deprotection treatment through an ink-jet printing device, and carrying out a coupling reaction with the active groups to obtain a mixed solution containing a nucleotide chain; carrying out cleaning, oxidation, capping and deprotection treatment on the mixed solution to obtain a single-layer base product; according to the target base sequence, determining a corresponding target monomer solution, and circularly carrying out a reaction to obtain a mixed solution containing a nucleotide chain; and obtaining the synthesized DNA according to the mixed solution. According to the method, high-throughput, high-quality and high-efficiency DNA synthesis can be realized.

The invention discloses a CRISPR / Cas12a-RPA (clustered regularly interspaced short palindromic repeats / CRISPR associated protein 12a-recombinase polymerase amplification)-based sequence combination for rapidly detecting mouse hepatitis virus and a kit thereof, and belongs to the technical field of biological detection The sequence combination comprises an RPA primer pair sequence, a crRNA sequence and an ssDNA probe sequence; the kit comprises an RPA primer pair sequence, a crRNA sequence and an ssDNA probe sequence, the kit further comprises a mouse hepatitis virus negative control standard substance, RNase-free water, an RPA reaction buffer solution, an NEB buffer solution, Lba Cas12a nuclease, dry powder RPA reaction microspheres containing recombinase polymerase and magnesium acetate with the concentration of 280 mM. The kit can be used for rapidly detecting the mouse hepatitis virus. The primer sequence combination provided by the invention is good in conservative property and specificity and relatively high in sensitivity, and rapid detection of the mouse hepatitis virus can be realized.

The invention discloses a hybridoma cell strain 1D6 as well as a monoclonal antibody and application thereof. The invention also discloses an application of the monoclonal antibody for resisting the Tilletia foetida in the detection of teliospore of the Tilletia foetida. The invention also discloses a single base sequence DNA single chain modified Tilletia foetida monoclonal antibody. The invention also discloses a detection kit. The monoclonal antibody as well as the marker and the kit thereof show high specific recognition capability on Tilletia foetida. The method for detecting the single base by mass spectrometry has a signal amplification effect and is simple and convenient in detection operation, so that the sensitivity and the detection efficiency of the method are remarkably improved. With the progress and continuous popularization and application of the mass spectrum technology, the technology has wide application potential and prospect.

A method for compressing molecular tagged sequence data includes: grouping sequence reads associated with a molecular tag sequence to form a family of sequence reads, corresponding vectors of flow space signal measurements and corresponding sequence alignments, calculating an arithmetic mean of the corresponding vectors of flow space signal measurements to form a vector of consensus flow space signal measurements, calculating a standard deviation of the corresponding vectors of flow space signal measurements to form a vector of standard deviations, determining a consensus base sequence based on the vector of consensus flow space signal measurements, determining a consensus sequence alignment and generating a compressed data structure comprising consensus compressed data, the consensus compressed data including for each family, the consensus base sequence, the consensus sequence alignment, the vector of consensus flow space signal measurements, the vector of standard deviations and the number of members.

The invention discloses PDRN and a preparation method and application thereof.The base sequence of the PDRN is shown as SEQ ID NO1, and the preparation method of the PDRN comprises the following steps that fermentation treatment is conducted through lactobacillus plantarum, and thalli are collected after an obtained fermentation culture solution is centrifuged; and resuspending the obtained thalli, homogenizing and crushing, centrifuging to remove precipitate, concentrating by using a 5kDa hollow fiber membrane, purifying the obtained concentrated solution by using a Q column, and then concentrating and changing the solution to obtain the high-purity PDRN. According to the method, the PDRN is obtained through fermentation of lactobacillus plantarum for the first time, compared with PDRN sourced from salmon or salmon and the like at present, the method is lower in production cost, and a new way is provided for PDRN production. The PDRN obtained by the method disclosed by the invention is high in purity and single in molecular weight, and experiments prove that the PDRN obtained by the method disclosed by the invention has higher activity in the aspects of promoting cell proliferation, promoting collagen generation and the like.

Disclosed in the present invention is a use of genes NAT1 and bHLH110 in improving high-temperature resistance of rice, for use in using gene editing technology to obtain a rice material having enhanced high-temperature resistance. The base sequence of a rice gene NAT1 is as shown in SEQ ID NO. 1, and the base sequence of a gene bHLH110 is as shown in SEQ ID NO. 4. A base of a rice gene NAT1 of rice is replaced, deleted or inserted through gene editing technology to release inhibition on the rice gene bHLH110, and the expression of wax synthesis genes CER1 and CER1L is promoted by the rice gene bHLH110 to enhance the high-temperature resistance of a plant, thereby preparing a rice material having enhanced high-temperature resistance. According to the present invention, a NAT1 mutant rice material Nipponbare obtained by using CRISPR-Cas9 gene editing technology has remarkably enhanced high-temperature resistance, including an improved survival rate in a seedling stage and improved agronomic traits in a reproductive stage.

A composition of matter includes an antisense phosphorodiamidate morpholino oligomer (MO) that includes an MO base sequence. The MO base sequence is arranged to bind a corresponding complementary base sequence of messenger RNA (mRNA) transcribed from one or more genes for the beta subunit of human chorionic gonadotropin (hCG-β). An inventive method, for suppressing intracellular synthesis of a beta subunit of human chorionic gonadotropin (hCG-β), includes introducing such an MO into one or more cells.

The present disclosure provides double stranded oligonucleotides, compositions, and methods relating thereto. The present disclosure encompasses the recognition that structural elements of double stranded oligonucleotides, such as base sequence, chemical modifications (e.g., modifications of sugar, base, and / or internucleotidic linkages) or patterns thereof, and / or stereochemistry (e.g., stereochemistry of backbone chiral centers (chiral internucleotidic linkages), and / or patterns thereof, can have significant impact on oligonucleotide properties and activities, e.g., RNA interference (RNAi) activity, Ago2 loading, thermal stability, in vivo stability, delivery to tissues and into cells, etc. The present disclosure also provides methods for treatment of diseases, e.g., hepatic diseases, central nervous system (CNS) diseases, etc., using provided double stranded oligonucleotide compositions, for example, in RNA interference.

To detect apple snails from environmental DNA with a high detection rate.SOLUTION: This method amplifies and detects environmental DNA in a sample with a first primer having a specific base sequence, a second primer having another specific base sequence, and a probe having still another base sequence.SELECTED DRAWING: None

The present invention provides a quality control analysis method for third-generation sequencing, which includes performing raw sequencing on the extracted gene sequence to obtain a POD5 text of the initial data. The POD5 text is then converted into a FASTQ file, and adapter data is removed. Quality assessment is then performed to obtain read data. The read data is then aligned and analyzed with the target base sequence of theoretical length, impurities are filtered, and finally, visual detection results are obtained. The present invention also provides a gene extraction method, which forms a highly optimized and reliable bioinformatics analysis process from raw data acquisition, preprocessing, quality assessment, alignment analysis, to final report generation.

The invention relates to the technical field of biology, and discloses an application method of a donkey whole genome 60K liquid phase chip, which comprises the following steps: carrying out nucleic acid extraction on pure biological tissues to obtain biological tissue nucleic acid; the method comprises the following steps: screening biological tissue nucleic acid to obtain target tissue nucleic acid, carrying out fragment connection and mixing on the target tissue nucleic acid to obtain a nucleic acid fragment mixture, carrying out amplification reaction on the nucleic acid fragment mixture to obtain an amplified nucleic acid library, and sequencing the hybridization liquid phase chip to obtain chip sequencing data; performing single-base variation screening on the chip sequencing data to obtain single-base variation data, performing base sequence splicing on the single-base variation data to obtain a single-base sequence, and calculating a genetic effect value corresponding to the donkey sample; and determining a core gene set corresponding to the donkey sample from the chip sequencing data, mining key gene loci in the core gene set, and generating a personalized genetic report of the donkey sample. The method can improve the analysis accuracy of the donkey whole genome.

The invention discloses a coding and decoding method and system based on DNA storage, electronic equipment and a storage medium. According to the scheme, original data is compressed into a binary sequence; grouping the binary sequence to obtain a plurality of groups of first subsequences; detecting the first subsequences, adding watermarks to the first subsequences meeting a preset type, and detecting first data types of all the first subsequences; executing corresponding coding operation on the first sub-sequence for the first data type to obtain a corresponding base sequence; synthesizing according to the obtained base sequence to obtain a target DNA sequence; original data can be obtained by decoding the target DNA sequence; the sequences are grouped and subjected to double-rule coding, so that the coding efficiency is improved, the GC content and the homopolymer length are limited, and the stability of DNA sequence synthesis is improved; the embodiment of the invention can be widely applied to the technical field of DNA storage.

The invention relates to a group of specific amplification primers for mitochondrial genes of procambarus clarkia and application thereof, and belongs to the technical field of molecular biology, and the mitochondrial genes of the procambarus clarkia comprise cytochrome c oxidase I subunit genes and cytochrome b genes. The specific amplification primer of the CO I gene comprises a CO I gene upstream primer and a CO I gene downstream primer, wherein the base sequences of the CO I gene upstream primer and the CO I gene downstream primer are respectively shown as SEQ NO.1 and SEQ NO.2; the specific amplification primer of the Cytb gene comprises a Cytb gene upstream primer and a Cytb gene downstream primer of which the base sequences are respectively as shown in SEQ NO.3 and SEQ NO.4. The invention further discloses a kit for detecting the Cytb gene. According to the amplification method of the mitochondrial gene of the procambarus clarkia, PCR (Polymerase Chain Reaction) amplification is carried out on a DNA (Deoxyribonucleic Acid) template solution of the procambarus clarkia by adopting amplification primers of a mitochondrial COI gene and a Cytb gene of the procambarus clarkia. The procambarus clarkia mitochondrial gene specific amplification primer has high specificity, a single target gene can be stably amplified, the length of the obtained procambarus clarkia mitochondrial COI gene segment reaches about 1000 bp, and the length of the obtained procambarus clarkia mitochondrial Cytb gene segment reaches about 800 bp.

The invention provides a simplified genome sequencing library construction method and a kit and related application thereof. The construction method of the simplified genome sequencing library comprises the following steps: (1) respectively carrying out enzyme digestion on a plurality of DNA (Deoxyribonucleic Acid) samples by using restriction endonuclease; wherein restriction endonucleases adopted by all the samples are different from one another, and the tail ends of specific DNA fragments of the samples are generated to serve as sample bar codes of the samples; (2) mixing the enzyme digestion products of the samples, constructing a DNA library, carrying out fragment sorting on the DNA library, and taking the selected library as a simplified genome sequencing library; or carrying out fragment sorting on the enzyme digestion product of each sample, and carrying out DNA library construction by using the selected fragments to obtain the simplified genome sequencing library. According to the method, the experimental operation process is simplified, the library building efficiency is improved, and meanwhile, the feasibility of the restriction endonuclease for recognizing 6 basic groups based on a third-generation long-read-long sequencing platform in the simplified genome sequencing technology is also explored.

The invention relates to the field of synthetic biology, in particular to a high-flux biosynthesis ink-jet printing control method and device, and the method comprises the steps: sequentially extracting base data from an obtained DNA base sequence file, and forming a one-dimensional original array; according to a preset printing width, the one-dimensional original array is converted into a two-dimensional array, meanwhile, visualization processing is carried out, corresponding colors are given to different basic groups, and a basic group distribution array diagram with matched row and column structures is obtained; establishing null arrays which correspond to different bases and are consistent in dimension based on the null arrays, traversing the original arrays and assigning values to the corresponding bases at the corresponding positions of the null arrays to obtain a plurality of single base arrays; converting the arrays into a two-dimensional array according to a preset width, and then converting the two-dimensional array into a monochromatic bitmap; and sending the bitmap according to the corresponding relationship between the basic groups and the nozzles and controlling printing. According to the invention, efficient and accurate printing of the base sequence in high-throughput biosynthesis is realized, and the synthesis efficiency and reliability are improved.

The invention discloses a compression and decompression method for DNA sequencing data, and belongs to the technical field of biological information. The technical problems that in the prior art, when third-generation sequencing data are compressed, flexibility is poor, and the compression rate is low are solved. According to the compression method for the DNA sequencing data, global compression or block compression can be dynamically selected before compression, different compression methods are adopted for different types of data, and the flexibility of the compression method is improved; when the base sequence is compressed, the adopted self-indexing structure is a lossless compression method, the initial positions of all the sequences can be compressed and restored by using smaller data volume, and the compression rate is improved. Due to the fact that a special design is adopted in a run length coding structure, a character part is removed, an obtained run length segment is shorter, lossless compression of the position and the sequence is guaranteed, and meanwhile a better compression effect is provided. The method is mainly used for compression and decompression of DNA sequencing data.

The invention relates to the field of optogenetics, in particular to an optogenetics tool for light-operated induced protein degradation and a construction method and application of the optogenetics tool. The invention relates to an optogenetics tool for light-operated induced protein degradation, which is characterized by comprising a fusion system of a truncated body mTRIM211-80 of mTRIM21 and CRY2, the base sequence of the mTRIM211-80 is as shown in SEQ ID NO. 1 (sequence identifier number 1); the base sequence of the CRY2 is as shown in SEQ ID NO. 2. The optogenetics tool is used for inducing the TRIM21 to form a polymer by utilizing the blue light photosensitive protein CRY2 and is used for the targeted regulation and control of the protein degradation under the driving of the blue light. Targeted degradation of protein can be achieved by utilizing Intrabody (intracellular antibody), time and space targeting is achieved, and after an optogenetics toolbox is optimized, the sensitivity and the reaction rate of the optogenetics toolbox are further improved.