The invention discloses an autophagy-based stem cell myocardial cell induced differentiation method and an application thereof. The method comprises the following steps of step 1, preparing an autophagy inducer wherein, the autophagy inducer dissolves in DMSO to prepare mother liquor, the mother liquor is stored at 20 DEG C, a solvent DMSO with the concentration being 0.01% is served as a controlgroup, and the mother liquor is added once when liquor is changed; step 2, stem cell culture; step 3, a first stage for stem cell induction, wherein a myocardial differentiation inducer is added, andcomprises the autophagy inducer prepared in the step 1 and vitamin C; step 4, a second stage for stem cell induction, wherein after good embryoid bodies are obtained through suspension culture, embryoid bodies are transferred into a cell culture plate for adherent culture, the induced culture solution is the same as that in the first stage, the liquor is exchanged each day or every two days according to the cell growth condition, and as time goes on, spontaneous rhythmic jump of the embryoid bodies is observed. The method improves the induced differentiation efficiency and is suitable for popularization and application.