The invention discloses a
genotype filling optimization method for spruce norvegensis and a reference panel, and belongs to the technical field of forest
heredity. The method comprises the following steps: constructing a
haplotype reference panel based on large-scale picea norvegensis re-
sequencing data; acquiring low-density
genotype data; carrying out
genotype filling by using IMPUTE5
software and integrating a genetic map of the picea norvegensis; and carrying out
quality control on a filling result, and reserving a high-quality SNP site with Rsqsoft greater than or equal to 0.8. According to the method, key parameters and optimal configuration influencing filling accuracy are evaluated and determined for the spruce norveyi
system for the first time, and the technical
bottleneck that the species are lack of a reliable filling process is solved. Through the method and the special reference panel provided by the invention, high-quality whole
genome filling data can be stably and efficiently obtained, and key
technical support is provided for genetic research and breeding practice of picea norvegensis.