The invention relates to a 
sample preparation method for 
mice brain tissue 
proteome analysis. The method comprises the following steps: (1) replacing the blood through apex 
perfusion, namely, narcotizing a mice, performing slow apex 
perfusion, stopping while the liver is in grey white, and taking out a 
brain tissue; (2) extracting 
protein, namely, 
grinding the 
brain tissue into 
powder, adding a pre-cooled 
Tris buffer solution, ultrasonically treating, incubating in a shaking table, and centrifuging to obtain a 
protein extracting solution I; (3) thermally treating to increase 
protein solubility, namely, mixing the protein extracting solution I and the thermally treated solution, treating for 5min, and centrifuging to obtain the protein extracting solution II; (4) precipitating to remove fat, namely, adding the protein extracting solution II in the pre-cooled fat-removing 
precipitation solution CUS, precipitating, centrifuging, washing, and 
drying to obtain purified protein 
powder; and (5) re-dissolving the protein, namely, adding the purified protein 
powder in an 
urea protein lysate, and centrifuging to obtain a 
proteome sample. With the 
sample preparation method disclosed by the invention, blood and fat influences of the 
brain tissue of the mice can be economically and efficiently removed, and the 
solubility of the protein sample is increased.