The invention discloses a rainstorm high-risk zoning method based on hydrometeorological region linear moment frequency analysis, and relates to the technical field of flood prevention and disaster reduction hydrometeorology. The specific scheme is that the method comprises the following steps: S1, carrying out data collection, screening and quality control; S2, analyzing the applicability and superiority of a regional linear moment method; S3, conducting hydrometeorological consistent area division; S4, carrying out linear selection of optimal distribution of a consistent area; S5, carrying out frequency estimation value calculation and space-time consistency adjustment; S6, drawing a rainstorm high-risk division map. The rainstorm high-risk zoning method based on hydrometeorological region linear moment frequency analysis provided by the invention not only can obtain a rainfall frequency estimation value with relatively high precision and accuracy, but also can reflect a spatial distribution relationship among the occurrence probability of a strong rainfall intensity-rainstorm falling area-probability of occurrence so as to analyze the rainstorm high-risk zoning, and can providea scientific basis for engineering flood control design, flood control planning design of regions and cities and early warning of mountain torrent disasters in a short duration.