Stationary phase for DNA synthesis as well as preparation method and application of stationary phase

By combining the nanomagnetic composite material Fe3O4@SiO2@N3 with the starter, a stable stationary phase is formed by using Click reaction, which solves the problem of low initiator binding strength in the prior art, and improves the stability and accuracy of DNA synthesis.

CN119661617AActive Publication Date: 2025-03-21TIANJIN ZHONGHE GENE TECH CO LTD +1

Patent Information

Application Number
CN202510179531.X
Authority / Receiving Office
CN · China
Patent Type
Applications(China)
Current Assignee / Owner
Filing Date
2025-02-19
Publication Date
2025-03-21
Estimated Expiration
2045-02-19

AI Technical Summary

Technical Problem

When existing streptavidin modified magnetic beads are used for DNA synthesis, the initiator binding strength is not high and it is easy to fall off, which affects the stability and accuracy of DNA synthesis.

Method used

By combining the nanomagnetic composite material Fe3O4@SiO2@N3 with the starter, the starter is loaded to the surface of the nanomagnetic composite material by using Click reaction to form a more stable stationary phase.

Benefits of technology

It improves the binding stability of the initiator, reduces the shedding of the initiator during DNA synthesis, and improves the accuracy and yield of DNA synthesis.

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Abstract

The invention provides a stationary phase for DNA synthesis and a preparation method and application thereof. The preparation method of the stationary phase for DNA synthesis, provided by the invention, comprises the following steps: S1, preparing nano magnetic ferroferric oxide particles, and coating the surfaces of the nano magnetic ferroferric oxide particles with SiO2 layers to obtain a nano magnetic composite material Fe3O4-SiO2; s2, carrying out azide group modification on the surface of the nano magnetic composite material Fe3O4 (at) SiO2 to form a surface-modified nano magnetic composite material Fe3O4 (at) SiO2 (at) N3; and S3, loading the initiator to the surface of the surface-modified nano magnetic composite material Fe3O4 (at) SiO2 (at) N3 through Click reaction to obtain the stationary phase for DNA synthesis. The stationary phase provided by the invention can be used for DNA synthesis, and has the characteristics of high bonding strength, good stability, difficult shedding of initiators, high DNA synthesis yield and the like.
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Description

Technical Field

[0001] The invention relates to the technical field of bioengineering, and in particular to a stationary phase for DNA synthesis and a preparation method and application thereof. Background Art

[0002] As a key basic technology in synthetic biology, the transformation of DNA synthesis technology and corresponding synthesis equipment will bring about major breakthroughs in the field of synthetic biology. The current mainstream DNA synthesis technology is the solid-phase phosphoramidite synthesis method developed in the 1980s. In this method, each synthesis of a nucleotide requires four steps: deprotection, coupling, capping and oxidation. However, this technology faces some serious problems, such as harsh synthesis environment requirements, the need to use toxic gases, and the generation of a large amount of hazardous waste after synthesis, which brings great challenges to post-processing. The enzyme synthesis technology that has emerged in recent years has brought hope to solve the problems existing in the solid-phase phosphoramidite synthesis method. Enzymatic DNA synthesis is mainly based on the engineering single-strand polymerase TDT to catalyze DNA chain extension, while using reversibly terminated modified nucleotides as substrates to accurately control the raw materials of each step of synthesis. Compared with traditional methods, the reaction conditions of enzymatic synthesis are very mild, which greatly reduces the requirements for the environment and can realize laboratory desktop synthesis; and the synthesis process does not produce toxic waste, and can be used with downstream biological enzyme catalysis for a series of operations such as splicing and error correction. It is compatible with biological assembly and has high integration feasibility, opening up a new path for the development of DNA synthesis technology.

[0003] Enzymatic DNA synthesis usually requires a solid phase carrier as a support for the initiator. On this basis, the raw materials required for DNA synthesis are added, including terminal deoxynucleotidyl transferase (TdT), an initiator with a 3'-OH end, and four deoxyribonucleoside triphosphates (dATP, dGTP, dTTP, and dCTP) for DNA enzymatic synthesis. Currently, existing solid phase carriers on the market, such as streptavidin-modified magnetic beads (SA magnetic beads), are widely used. They specifically bind to biotin modified on the initiator to fix the initiator on the magnetic beads, which is convenient for subsequent purification and separation; however, this fixation method has certain limitations. Biotin and streptavidin are affinity adsorbed, and their binding strength is sensitive to temperature. High temperature will cause the initiator to fall off. This will undoubtedly have an adverse effect on the stability and accuracy of DNA synthesis, and may even lead to deviations in experimental results. Summary of the invention

[0004] The present invention provides a stationary phase for DNA synthesis and a preparation method thereof, which is obtained by combining a surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 with an initiator, and is used to solve the problems of low binding strength of streptavidin-modified magnetic beads and easy shedding of the initiator.

[0005] In a first aspect, the present invention provides a method for preparing a stationary phase for DNA synthesis, comprising: S1, preparing nano-magnetic ferroferric oxide particles, and coating the surface of the nano-magnetic ferroferric oxide particles with a SiO2 layer to obtain a nano-magnetic composite material Fe3O4@SiO2; S2, modifying the surface of the nano-magnetic composite material Fe3O4@SiO2 with azide groups to obtain a surface-modified nano-magnetic composite material Fe3O4@SiO2@N3; S3, mixing the surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 with an initiator, and loading the initiator onto the surface of the surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 through a Click reaction to obtain the stationary phase for DNA synthesis; The initiator is a single-stranded DNA with a dibenzocyclooctyne group modified at the 5' end, and a free hydroxyl group at the 3' end of the single-stranded DNA.

[0006] According to the method described above, the nano-magnetic ferroferric oxide particles can be synthesized by a hydrothermal method; specifically, a trivalent iron source and a reducing agent are mixed and subjected to a redox reaction, and a portion of the trivalent iron is reduced to divalent iron under the action of the reducing agent, and the divalent iron and the remaining trivalent iron form metal oxides under high temperature and high pressure conditions to obtain nano-magnetic ferroferric oxide particles Fe3O4.

[0007] Furthermore, the trivalent iron source may be at least one of inorganic iron salts such as ferric chloride hexahydrate, ferric nitrate, and ferric sulfate, or organic iron salts such as ammonium ferric citrate and ferric gluconate. The reducing agent is at least one of oxalic acid or its salt, citric acid or its salt, vitamin C, glucose, sulfite, dithionite, hydroxylamine hydrochloride, and sodium borohydride; wherein oxalic acid or its salt, citric acid or its salt may also exist in the form of substances containing different water, such as oxalic acid dihydrate (H2C2O4•2H2O), calcium oxalate monohydrate (CaC2O4•H2O) and calcium oxalate dihydrate (CaC2O4•2H2O), sodium oxalate dihydrate (NaC2O4•2H2O), sodium citrate (Na3C6H5O7), sodium citrate dihydrate (Na3C6H5O7•2H2O), sodium citrate pentahydrate (Na3C6H5O7•5H2O), calcium citrate (Ca3C6H5O7), etc.

[0008] Furthermore, the molar ratio of the ferric iron source to the reducing agent is (2.5:1)-(6:1). The size of the nano-magnetic ferroferric oxide particles Fe3O4 is regulated by sodium acetate, and the molar ratio of the ferric iron source to sodium acetate is (1:3)-(1:6).

[0009] Furthermore, the ferric iron source, the reducing agent and sodium acetate are uniformly mixed, and reacted by a hydrothermal method for 6-12 hours. After the reaction is completed, the reaction product is washed to obtain nano-magnetic ferroferric oxide particles Fe3O4.

[0010] Furthermore, the temperature of the hydrothermal method is 150-200° C. and the pressure is 4.7-15.5 Mpa.

[0011] The prepared nano-magnetic ferroferric oxide Fe3O4 particles are spherical particles with an average particle size of 100-1000 nm and a PI of less than 0.2. PI (polydispersity index) is an important indicator for evaluating the uniformity of particle distribution in dynamic light scattering (DLS). The PI value ranges from 0 to 1, and the smaller the value, the more uniform the particle size. Both the average particle size and PI are obtained by testing using a dynamic light scattering nanoparticle sizer.

[0012] According to the method described above, the nano-magnetic ferroferric oxide particles Fe3O4 synthesized according to the above steps are subjected to coating reaction with a silicon source, and a SiO2 shell layer is coated on the surface of the nano-magnetic ferroferric oxide particles Fe3O4 to obtain a nano-magnetic composite material Fe3O4@SiO2.

[0013] Furthermore, the silicon source is one or more polysiloxanes such as tetraethyl orthosilicate (TEOS), sodium silicate, trimethylethoxysilane and polydiethoxysiloxane.

[0014] Furthermore, during the reaction, the nano-magnetic ferroferric oxide particles Fe3O4 are dispersed in an aqueous solution of an organic alcohol, a catalyst is added and mixed evenly to obtain a mixed reaction system; then a silicon source is added to carry out a coating reaction, and after the reaction is completed, the reaction product is cleaned to obtain a nano-magnetic composite material Fe3O4@SiO2.

[0015] Furthermore, the mass ratio of the nano-magnetic ferroferric oxide particles Fe3O4 to the silicon source is 5:1-2:1; the aqueous solution of the organic alcohol is an aqueous solution of ethanol; and the volume ratio of the organic alcohol to water is 1:1-4:1.

[0016] Furthermore, the catalyst is aqueous ammonia; and the volume ratio of the catalyst to the silicon source is 1:1-1:3.

[0017] Furthermore, the coating reaction temperature is 30-80°C, and the reaction time is 0.5-24 h.

[0018] Furthermore, the average particle size of the nano-magnetic composite material Fe3O4@SiO2 is 100-1000 nm, and the PI is less than 0.2.

[0019] According to the method described above, the nano-magnetic composite material Fe3O4@SiO2 prepared according to the above steps is mixed with a silane coupling agent containing an azide group and subjected to a condensation reaction to form an azide group on the surface of the nano-magnetic composite material Fe3O4@SiO2, thereby obtaining a surface-modified nano-magnetic composite material Fe3O4@SiO2@N3.

[0020] Furthermore, the silane coupling agent containing an azide group is selected from at least one of 3-(azidopropyl)triethoxysilane, 3-(azidopropyl)trimethoxysilane, and 6-azidosulfonylhexyltriethoxysilane.

[0021] Furthermore, the mass concentration of the nano-magnetic composite material Fe3O4@SiO2 in the reaction system is 5%-20%, and the mass concentration of the silane coupling agent containing an azide group is 10%-30%.

[0022] Furthermore, the solvent used in the reaction system is an alcohol solution containing 1%-25% water, and the alcohol is one of ethanol, isopropanol and cyclohexanol.

[0023] Furthermore, the surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 has an average particle size of 100-1000 nm and a PI of less than 0.2.

[0024] In the method described above, the initiator serves as the basis for DNA synthesis, and its 5' end is modified with DBCO and connected to the azide group on the surface of the nanomagnetic composite material Fe3O4@SiO2@N3 through a covalent bond through a Click reaction, thereby improving the binding stability of the initiator on the surface of the nanomagnetic composite material Fe3O4@SiO2@N3, and its 3' terminal hydroxyl group provides a deoxyribonucleotide connection point for terminal deoxynucleotidyl transferase (TdT).

[0025] According to the method described above, based on each milligram of surface-modified nanomagnetic composite material Fe3O4@SiO2@N3, the loading amount of the initiator loaded onto the surface of the nanomagnetic composite material Fe3O4@SiO2@N3 is 1 pmol-1000 pmol; specifically, it can be 1 pmol, 5 pmol, 10 pmol, 20 pmol, 50 pmol, 100 pmol, 200 pmol, 300 pmol, 400 pmol, 500 pmol, 600 pmol, 700 pmol, 800 pmol, 900 pmol, 1000 pmol or within the range of any two thereof.

[0026] In the method described above, the temperature of the Click reaction is 25-55° C., and the reaction time is 0.5-24 h.

[0027] According to the method described above, depending on the application scenario of the target DNA, such as the synthesis of primers for PCR, the initiator may also include a cleavage site. After the target DNA is synthesized, the cleavage site is cleaved to break the DNA chain behind the 3' end of the cleavage site, dissociate from the nanomagnetic composite material Fe3O4@SiO2@N3, release the synthesized target DNA, and use the synthesized target DNA directly as a primer for PCR reaction.

[0028] Furthermore, the cleavage site may be inosine nucleotide.

[0029] Furthermore, the structure of the initiator containing the cleavage site can be shown as Formula 1: 5'-DBCO-n(a)-dI-n(b)-3' Formula 1; In Formula 1, DBCO is a dibenzocyclooctyne group, n(a) is a single-stranded DNA group having a nucleotide sequence of SEQ ID NO: 1, n(b) is a single-stranded DNA group having a nucleotide sequence of SEQ ID NO: 2, and dI is inosine nucleotide.

[0030] In the method described above, the target DNA may be an oligonucleotide chain, the initiator may not contain a cleavage site, and the synthesized target DNA can be directly used in subsequent methods without dissociation from the nanomagnetic composite material Fe3O4@SiO2@N3.

[0031] In a second aspect, the present invention provides a stationary phase for DNA synthesis prepared according to the above preparation method.

[0032] In a third aspect, the present invention provides use of the above-mentioned stationary phase for DNA synthesis in synthesizing DNA.

[0033] In a fourth aspect, the present invention provides a method for synthesizing DNA, comprising: using an enzymatic method to synthesize a target DNA using a stationary phase for DNA synthesis prepared according to the above-mentioned preparation method.

[0034] The method as described above comprises the steps of synthesizing DNA according to the stationary phase for DNA synthesis as described above: a) fully contacting and reacting an initiator having a free 3'-OH or an extension fragment having a free 3'-OH with a nucleotide monomer containing a 3'-O-blocking group and a template-independent terminal deoxynucleotidyl transferase (TdT) in a reaction system, introducing a new nucleotide monomer containing a 3'-O-blocking group at the 3-OH end of the initiator having a free 3'-OH or the extension fragment, and obtaining an extension fragment connected with a 3'-O-blocking group; b) adding a reaction solution capable of removing the blocking group located on the 3'-OH, so that the extension fragment is unblocked to form an extension fragment with a free 3'-OH; adding nucleotide monomers containing a blocking group at 3'-OH in sequence according to the base sequence required for the DNA chain to be synthesized, and continuously repeating the cycle process of the above two steps a) and b) until the target length is reached, and finally forming the DNA chain to be synthesized.

[0035] Furthermore, the blocking group may be at least one of an amino group, an allyl group, a phosphate group or a methylazido group. The reaction solution for removing the blocking group may be sodium nitrite, a platinum salt, an acid or tris(2-carboxyethyl)phosphine.

[0036] The surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 provided by the present invention can be used as a stationary phase carrier for DNA synthesis. Compared with SA magnetic beads, the initiator loaded on the surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 has better stability. The binding mode of SA magnetic beads and biotin-modified initiators is affinity adsorption, and its binding strength varies with temperature. At high temperatures, the initiator will easily fall off the magnetic beads; while Fe3O4@SiO2@N3 and DBCO-modified initiators are coupled through Click reaction, which has high reaction efficiency, high binding strength, good stability after binding, and is not easy to fall off. In addition, the surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 provided by the present invention helps to increase the amount of DNA synthesis and expands the scope of application of enzymatic DNA synthesis. BRIEF DESCRIPTION OF THE DRAWINGS

[0037] Figure 1 Characterization of the particle size of the nano-magnetic composite material Fe3O4 prepared in step 1 of Example 1 of the present invention; Figure 2 Characterization of the particle size of the nano-magnetic composite material Fe3O4@SiO2 prepared in step 2 of Example 1 of the present invention; Figure 3 Characterization of the particle size of the nano-magnetic composite material Fe3O4@SiO2@N3 prepared in step 3 of Example 1 of the present invention; Figure 4This is the gel image obtained after DNA synthesis using the enzymatic method in Example 3; Figure 5 This is a test result diagram of the initiator shedding during DNA synthesis using SA magnetic beads and Fe3O4@SiO2@N3 magnetic beads as stationary phase carriers. DETAILED DESCRIPTION

[0038] In order to make the purpose, technical solution and advantages of the present invention clearer, the technical solution of the present invention will be clearly and completely described below in conjunction with the drawings in the present invention. Obviously, the described embodiments are part of the embodiments of the present invention, not all of the embodiments, and they should not be understood as limitations on the present invention. Based on the embodiments of the present invention, all other embodiments obtained by ordinary technicians in this field without creative work are within the scope of protection of the present invention. In the description of the present invention, it should be understood that the terms used are only for descriptive purposes and cannot be understood as indicating or implying relative importance.

[0039] The experimental methods in the following examples, unless otherwise specified, are all conventional methods, and are performed according to the techniques or conditions described in the literature in the field or according to the product instructions. The materials, reagents, etc. used in the following examples, unless otherwise specified, can all be obtained from commercial channels.

[0040] Example 1. Preparation of stationary phase for DNA synthesis Step 1. Preparation of Fe3O4 magnetic beads Weigh 1.08 g of ferric chloride hexahydrate and 0.2 g of sodium citrate and evenly disperse them in the solvent, then add 1.2 g of sodium acetate and shake thoroughly to mix; the mixed solution is magnetically stirred for a certain period of time, and reacted at 200°C and 15.5 MPa for 6 hours according to the hydrothermal method. The obtained product is washed several times to obtain magnetic ferroferric oxide nanoparticles. The magnetic ferroferric oxide nanoparticles are tested using a dynamic light scattering nanoparticle size analyzer. The test results are as follows: Figure 1 As shown, it can be seen that the average particle size of the magnetic ferroferric oxide nanoparticles Fe3O4 is 361.3 nm and the PI is 0.1516.

[0041] Step 2: Preparation of Fe3O4@SiO2 magnetic beads Take 0.1 g of the magnetic ferroferric oxide nanoparticles Fe3O4 prepared in step 1 and disperse them in an ethanol aqueous solution. After 30 minutes, add 20 μL of ammonia water and raise the temperature to 77°C. After the temperature is kept constant, add 20 μL of TEOS (tetraethyl orthosilicate) to react fully. After the reaction is complete, wash the product several times to obtain Fe3O4@SiO2 magnetic beads. The Fe3O4@SiO2 magnetic beads were tested using a dynamic light scattering nanoparticle size analyzer. The test results are as follows: Figure 2 As shown, it can be seen that the average particle size of Fe3O4@SiO2 magnetic beads is 383.8 nm and the PI is 0.1332.

[0042] Step 3: Preparation of Fe3O4@SiO2@N3 magnetic beads Disperse 10% 3-azidopropyltriethoxysilane in an ethanol aqueous solution for hydrolysis to obtain a dispersion of 10% 3-azidopropyltriethoxysilane. Add 0.05g of the Fe3O4@SiO2 magnetic beads prepared in step 2 to the above dispersion and perform a condensation reaction. The reaction temperature is controlled at 30°C. After 5 hours of reaction, the product is washed several times to obtain Fe3O4@SiO2@N3 magnetic beads. The Fe3O4@SiO2@N3 magnetic beads are tested using a dynamic light scattering nanoparticle size analyzer. The test results are as follows: Figure 3 As shown, it can be seen that the average particle size of Fe3O4@SiO2@N3 magnetic beads is 420.2 nm and the PI is 0.1025.

[0043] Step 4. Preparation of stationary phase for DNA synthesis Take 200 μL of 10 mg / mL Fe3O4@SiO2@N3 magnetic beads prepared in step 3 as the stationary phase carrier, and then add 1100 pmol of the initiator for binding; The structure of the initiator is shown in Formula 1: 5'-DBCO-n(a)-dI-n(b)-3' Formula 1; In Formula 1, the nucleotide sequence of n(a) is SEQ ID NO: 1, the nucleotide sequence of n(b) is SEQ ID NO: 2, and dI is inosine nucleotide.

[0044] SEQ ID NO: 1: 5'-TTTTTTTTTTTTTTTTTTTTTTTTTCACCTGAC-3'; SEQ ID NO:2: 5'-ATGCACTAGGACGACTCGAATT-3'.

[0045] The mixed system including Fe3O4@SiO2@N3 magnetic beads and the initiator of the structure shown in Formula 1 was reacted at 30°C for 2 h. After the reaction, a stationary phase for DNA synthesis was obtained. The concentration of the primer before and after binding was determined using the Qubit kit, and the binding amount and loading amount were calculated by the difference method. The results are shown in Table 1.

[0046]

[0047] Example 2: Enzymatic Biosynthesis of DNA The stationary phase prepared in Example 1 is used to carry out DNA synthesis reaction and deprotection reaction cycle to synthesize the target sequence. Specifically, TdT enzyme and dNTP with protected bases can be used for enzyme reaction, and the protected bases can be eluted with deprotection solution. Multiple cycles can be used to achieve enzymatic synthesis of the target DNA sequence. The synthesis steps are as follows: 1. Prepare the reaction system required for enzymatic DNA synthesis, including reaction solution, deprotection solution and cleaning solution, wherein the reaction solution includes TdT enzyme, dNTP with protected bases, 0.25 mM CoCl2, 100 mM NaCl and 50 mM phosphate buffer; the deprotection solution is 700 mM pH 5 sodium nitrite buffer; the cleaning solution includes 50 mM potassium phosphate buffer and 100 mM NaCl; 2. Place the magnetic beads in the system, add the reaction solution containing the corresponding nucleotide (including TdT enzyme) to react, add the deprotection solution after the reaction is completed and remove the protective group at the 3' end of the synthesis to facilitate the connection of the next nucleotide; 3. Wash the magnetic beads 2-3 times with a cleaning solution. After washing, continue to add the reaction solution containing the next nucleotide to react, and repeat the reaction-deprotection group-magnetic bead washing steps in the order of TAGGTATATATGTGCCATGGTGGTTTGTTGCACCCATCAACCCTTCATCTACATTAGGTA to achieve enzymatic synthesis of the target DNA sequence and synthesize the required DNA chain; 4. Cut the DNA after synthesis with enzyme, take the supernatant containing DNA for PAGE gel test, and analyze the electrophoresis bands, such as Figure 4 As shown, the DNA lengths obtained from the four parallel experiments were consistent with those of the standard.

[0048] 5. The synthesized DNA was sent for next-generation sequencing. The sequencing results are shown in Table 2. The average yield can reach 69%. According to the formula shown in Formula 2, the average single-step accuracy can reach 99.39%.

[0049] Accuracy = Formula 2.

[0050]

[0051] Comparative Example 1: Streptavidin-modified (SA) magnetic beads as stationary phase for biosynthesizing DNA The 5' end of the initiator was modified with biotin to obtain a biotin-modified initiator; the nucleotide sequence of the initiator was 5'-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCACCTGAC / dI / ATGCACTAGGACGACTCGAATT-3', and the same amount of DNA primer chain was added to combine with SA magnetic beads (purchased from Suzhou Beaver Biotechnology Co., Ltd.) as a control of the stationary phase carrier, and then enzymatic DNA synthesis was performed with the same target sequence as the homemade stationary phase carrier in Example 2. The sequencing results are shown in Table 3, and the average synthesis accuracy is 98.93%, and the average yield is 52.74%.

[0052]

[0053] It can be seen from Tables 2 and 3 that, compared with magnetic beads modified with streptavidin (SA), the use of the stationary phase for DNA synthesis provided in Example 1 of the present invention helps to improve the yield and single-step accuracy of DNA enzymatic synthesis.

[0054] Comparative Example 2: Investigation of primer shedding during gene synthesis The prepared Fe3O4@SiO2@N3 magnetic beads and SA magnetic beads were used as stationary phase carriers to perform primer shedding tests during enzymatic synthesis. The specific steps are as follows: Repeat the synthesis reaction-deprotection group-magnetic bead washing steps in the order of TAGGTATATATGTGCCATGGTGGTTTGTTGCACCCATCAACCCTTCATCTACATTAGGTA. Take out 10 μL of each round of synthesis in the first five rounds and perform PAGE gel test on the supernatant. The test results are as follows: Figure 5 As shown, Figure A shows the probe shedding of SA magnetic bead stationary phase, and Figure B shows the probe shedding of Fe3O4@SiO2@N3.

[0055] according to Figure 5 It can be seen that during the enzymatic DNA synthesis using SA magnetic beads, detached DNA chains existed in the supernatant, while during the DNA synthesis using Fe3O4@SiO2@N3 magnetic beads, no detached DNA chains were detected in the supernatant, indicating that the binding strength between Fe3O4@SiO2@N3 magnetic beads and the initiator was high and not easy to fall off from the surface of the magnetic beads, which was conducive to the enzymatic synthesis of DNA.

[0056] The present invention uses ferroferric oxide magnetic nanoparticles as the core with excellent physical and chemical properties, and obtains functional magnetic nanoparticles by grafting functional groups on the surface and modifying them, thereby successfully preparing a stationary phase with low cost and good stability. The stationary phase of the present invention can be used to carry out biological DNA synthesis reaction, and the synthesis accuracy and yield are also high.

[0057] Finally, it should be noted that the above embodiments are only used to illustrate the technical solutions of the present invention, rather than to limit it. Although the present invention has been described in detail with reference to the aforementioned embodiments, those skilled in the art should understand that they can still modify the technical solutions described in the aforementioned embodiments, or make equivalent replacements for some of the technical features therein. However, these modifications or replacements do not deviate the essence of the corresponding technical solutions from the spirit and scope of the technical solutions of the embodiments of the present invention.

Claims

1. A method for preparing a stationary phase for DNA synthesis, characterized in that: include: S1, preparing nano-magnetic ferroferric oxide particles, and coating the surface of the nano-magnetic ferroferric oxide particles with a SiO2 layer to obtain a nano-magnetic composite material Fe3O4@SiO2; S2, modifying the surface of the nano-magnetic composite material Fe3O4@SiO2 with azide groups to obtain a surface-modified nano-magnetic composite material Fe3O4@SiO2@N3; S3, mixing the surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 with an initiator, and loading the initiator onto the surface of the surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 through a Click reaction to obtain the stationary phase for DNA synthesis; The initiator is a single-stranded DNA with a dibenzocyclooctyne group modified at the 5' end, and a free hydroxyl group at the 3' end of the single-stranded DNA.

2. The preparation method according to claim 1, characterized in that: S2 specifically includes: mixing the nano-magnetic composite material Fe3O4@SiO2 with a silane coupling agent containing an azide group, modifying the surface of the nano-magnetic composite material Fe3O4@SiO2 with an azide group through a condensation reaction, and obtaining a surface-modified nano-magnetic composite material Fe3O4@SiO2@N3.

3. The preparation method according to claim 2, characterized in that: The silane coupling agent containing an azide group is selected from at least one of 3-(azidopropyl)triethoxysilane, 3-(azidopropyl)trimethoxysilane, and 6-azidosulfonylhexyltriethoxysilane.

4. The preparation method according to claim 2 or 3, characterized in that: The mass concentration of the nano-magnetic composite material Fe3O4@SiO2 in the reaction system is 5%-20%; and / or the mass concentration of the silane coupling agent containing an azide group in the reaction system is 10%-30%.

5. The preparation method according to claim 1, characterized in that: The surface-modified nano-magnetic composite material Fe3O4@SiO2@N3 has an average particle size of 100-1000 nm and a PI of less than 0.

2.

6. The preparation method according to claim 1, characterized in that: The initiator also includes a cleavage site.

7. The preparation method according to claim 1, characterized in that: Based on each milligram of the surface-modified nano-magnetic composite material Fe3O4@SiO2@N3, the loading amount of the initiator is 1 pmol-1000 pmol.

8. A stationary phase for DNA synthesis prepared according to the preparation method according to any one of claims 1 to 7.

9. Use of the stationary phase for DNA synthesis according to claim 8 in synthesizing DNA.

10. A method for synthesizing DNA, characterized in that: include: The target DNA is synthesized using an enzymatic method using the stationary phase for DNA synthesis prepared by the preparation method according to any one of claims 1 to 7.

Citation Information

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