The invention discloses a repeatable inner locking device for a magnetically levitated flywheel; the device mainly comprises a flywheel system, a locking transmission mechanism and a locking maintaining mechanism; the flywheel system mainly comprises a flywheel rotor and a flywheel stator shaft; the locking transmission mechanism mainly comprises a motor, a gearbox, a left bearing compression ring, a left bearing, a right bearing and a lead screw; the locking maintaining mechanism mainly comprises a lock head, a lock sleeve, a micro switch, a fixed seat, a damping washer, a reset spring, a position adjusting stud, a locking gland and a buffer rubber pad; according to the repeatable inner locking device for the magnetically levitated flywheel, the repeatable inner locking device is arranged in the center of the flywheel rotor, and is fixedly arranged on the flywheel stator shaft through a fastening screw; and the inner locking device protects the magnetically levitated flywheel system, and has the advantages of reusability, high reliability, small size, light weight, simple structure and the like.