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RNA sequencing data processing method and device

A technology for sequencing data and processing methods, applied in electrical digital data processing, special data processing applications, instruments, etc., and can solve problems such as incomplete information and single results

Active Publication Date: 2015-04-08
BEIJING NOVOGENE TECH CO LTD
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  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

[0004] The purpose of the present invention is to provide a processing method and device for RNA sequencing data,

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  • RNA sequencing data processing method and device

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Embodiment Construction

[0027] It should be noted that, in the case of no conflict, the embodiments in the present application and the features in the embodiments can be combined with each other. The present invention will be described in detail below with reference to the accompanying drawings and examples.

[0028] Terminology Explanation

[0029] SNP (single nucleotide polymorphism) stands for single nucleotide polymorphism;

[0030] INDEL (insert and deletion) represents insertion and deletion;

[0031] SSR (Simple Sequence Repeat) stands for simple repeat sequence;

[0032] CDS (Coding Sequence) represents the coding sequence;

[0033] RPKM (Per Kilo-base per Million) represents the number of reads per kilobase length from a gene in every million reads;

[0034] FPKM (Per Kilobase of exon model per Million mapped reads) represents the number of reads aligned to each kilobase of an exon in every million aligned reads;

[0035] NR (Non-redundant protein sequences) represents non-redundant pro...

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Abstract

The invention discloses an RNA sequencing data processing method and an RNA sequencing data processing device. The RNA sequencing data processing method comprises the following steps: acquiring a file path of RNA sequencing data; according to the file path of RNA sequencing data, acquiring a sequencing data file containing the RNA sequencing data; acquiring a querying condition for screening the sequencing data file, wherein the querying condition at least comprises any or several of the following conditions: a gene name list containing at least one gene name and a gene information label of at least one sample; according to the querying condition, querying from the sequencing data file to obtain querying condition-meeting screening results in the RNA sequencing data; outputting the querying condition-meeting screening results in the RNA sequencing data. According to the RNA sequencing data processing method and the RNA sequencing data processing device, the RNA sequencing data are queried according to the interested querying condition input by a user, and convenience is provided for diversity screening and analysis of the RNA sequencing data, so that processing results are more diverse, more comprehensive in information and higher in guidance value.

Description

technical field [0001] The present invention relates to the field of sequencing data processing, in particular to a method and device for processing RNA sequencing data. Background technique [0002] Because high-throughput sequencing technology has the advantages of high throughput, low cost, and large amount of data information, more and more biological researchers choose high-throughput sequencing as a research method. However, the data obtained by sequencing is massive, and major sequencing companies have introduced various processing methods for users to choose from. The defect of single result and inability to carry out diversified analysis. [0003] Therefore, it is urgent to establish a method that can perform diversified analysis on sequencing data to provide more accurate and comprehensive analysis results. Contents of the invention [0004] The purpose of the present invention is to provide a processing method and device for RNA sequencing data, so as to impro...

Claims

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Application Information

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IPC IPC(8): G06F19/20G06F17/30
Inventor 陈利群姜晓雪郭阳周婷婷
Owner BEIJING NOVOGENE TECH CO LTD