The invention discloses a structure variation marker in
apple scab resistance breeding and application thereof. The invention claims to protect application of a specific fragment as a
molecular marker in detection or auxiliary detection of resistance of apple plants to scab; the
nucleotide sequence of the specific fragment is as shown in SEQ ID No. 1 or the 393 to 1166 sites of SEQ ID No. 1. Experiments prove that the scab resistance potential in natural plants or filial generations can be quickly screened by utilizing the deletion and existence of the SCAB-R fragment (SEQ ID No.1), which has important significance on scab resistance breeding of
malus plants.