The invention relates to the technical field of physical therapy, in particular to a magnetic physical therapy instrument which can save equipment cost, can perform magnetic physical therapy on the whole body of a user at the same time, and the practicability is improved. The magnetic physical therapy instrument comprises a base, a stability adjusting device, a supporting column, a physical therapy table, an arm physical therapy bin, a leg physical therapy bin, a waist physical therapy area, a control box, a connecting line, a foot physical therapy area, a moving device and a magnetic therapy generator, the stability adjusting device is installed at the bottom end of the base, the bottom end of the supporting column is fixedly connected with the top end of the base, and the supporting column is obliquely installed on the base; the bottom end of the physical therapy table is fixedly connected with the top end of the supporting column, the top end of the physical therapy table is provided with a soft cushion for a user to lie flat, the front end and the rear end of the soft cushion are each provided with an arm placing area for the user to place the arm, the arm physical therapy bin and the leg physical therapy bin are all in a semicircular tube shape, and a plurality of groups of electromagnetic physical therapy heads are arranged on the inner walls of the arm physical therapy bin and the leg physical therapy bin.