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Kit for detecting expression level of human ERCC1 (excision repair cross complementation 1) through PCR (polymerase chain reaction) method

A gene expression level and kit technology, applied in the field of molecular biology, can solve the problems of not using RNA calibrator, not reducing experimental errors, and not being able to obtain mutual comparisons, etc., to achieve elimination of non-experimental differences, high specificity, and reduction of effect of error

Inactive Publication Date: 2013-12-18
JIANGSU KANGKE BIOTECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

This technology allows for precise measurement of certain genes that are involved in diseases such as breast cancer through analysis on patient samples collected from different locations around them over several months's period. It involves performing multiple reactions at once within an enclosed chamber called a tube where there is no air gap during this procedure. By measuring changes made throughout these steps, we aimed towards identifying potential causes like tumor growth or metastasis.

Problems solved by technology

This patents discuss various technical problem addressed during investigations into identifying potential therapic targets associated with EGFR activation and metabolism in lung carcinoma. Current methods involve measuring escalating lymph node biopsy data from patient samples followed upward through multiple steps before finding active agents targetable against these targets. These techniques may lead to imprecise diagnosis because they rely heavily on correlativity among other variables like histone variants and transcriptional activity. Therefore, novel assays capable of more accurate identification of possible therapeutic candidates would improve our understanding of how well responding treatments work towards lung cancer.

Method used

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  • Kit for detecting expression level of human ERCC1 (excision repair cross complementation 1) through PCR (polymerase chain reaction) method
  • Kit for detecting expression level of human ERCC1 (excision repair cross complementation 1) through PCR (polymerase chain reaction) method
  • Kit for detecting expression level of human ERCC1 (excision repair cross complementation 1) through PCR (polymerase chain reaction) method

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Experimental program
Comparison scheme
Effect test

Embodiment 1

[0052] The determination of embodiment 1 calibrator cell

[0053] 1 Cell activation and culture methods:

[0054] Use T25 flasks to culture alternative standard cell lines, such as: human breast cancer cell line T47D, human breast cancer cell line MCF-7, human non-small cell lung cancer cell line A549, human colon cancer cell line Lovo and other cells, culture medium Use 1640.

[0055] Observe the cell growth every day. If the color of the medium turns yellow, do the following: absorb the old medium and wash the cells once with about 3ml of PBS, shake gently and then absorb the PBS, absorb 5ml of the 1640 medium into a T25 bottle, and gently Shake gently, continue to culture at 37°C, 5% CO 2 In the incubator (generally replace the culture medium every 1 to 2 days);

[0056] Observe the growth of the cells. If the cells are 90% to 100% full, proceed as follows: absorb the old culture medium, wash the culture bottle with about 3ml of PBS, shake it gently, absorb the PBS, add ...

Embodiment 2

[0070] Embodiment 2 detects the kit of gene expression level

[0071] The kit for detecting the expression level of human ERCC1 gene by PCR method includes:

[0072] Primers corresponding to amplifying the human ERCC1 gene:

[0073] ERCC1 upstream primer: 5′-GAAGGACAAACGGGGGGT-3′

[0074] ERCC1 downstream primer: 5′-AGTGGGTAGCTCTGTGT-3′

[0075] Primers corresponding to amplifying the GAPDH internal reference gene:

[0076] GAPDH upstream primer: 5′-GAAGGTGCAAGGTCGGAGT-3′

[0077] GAPDH downstream primer: 5′-GAAGATGGTAGCTGGGATTTC-3′

[0078] Fluorescent probes corresponding to the ERCC1 gene and the GAPDH gene are also included, which are:

[0079] 5′-FAM-AATTTCTTCCCTGCTGGCGGCCC-BHQ1-3′

[0080] 5′-FAM-CAAGCTTCCCAGTCTCAGCC-BHQ1-3′

[0081] The above primers and probes were synthesized by Shanghai Sangong Co., Ltd.

[0082] Calibrator cells: Human breast cancer cell line T47D was used.

[0083] The kit also includes a positive control: replace the template with a recom...

Embodiment 3

[0091] RNA Extraction and Transcription of Example 3 Samples

[0092] Randomly select 40 clinical samples of non-small cell lung cancer and 10 samples of normal lung tissue. The sources of non-small cell lung cancer samples are as follows:

[0093] (1) Complete surgical resection for patients with non-small cell lung cancer

[0094] (2) The tumor stage is stage Ⅰ-Ⅲ.

[0095] (3) The age of the patient is between 25-75 years old.

[0096] (4) Not receiving chemotherapy or radiotherapy, not suffering from other tumors (except non-melanoma skin cancer or cervical carcinoma in situ)

[0097] Steps:

[0098] 1. Extraction of RNA: 40 cases of non-small cell lung cancer clinical cancer tissues and corresponding normal tissue samples and 10 cases of normal lung tissue samples were collected, and the total RNA of cancer tissues and normal tissues was extracted according to the method of Omega paraffin tissue RNA extraction and purification. The purity and concentration of RNA were ...

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Abstract

The invention provides a kit for detecting the expression level of ERCC1 (excision repair cross complementation 1). By adopting a fluorescent quantitative PCR (polymerase chain reaction) platform, and taking RNA (ribonucleic acid) reserved by culture cells as external calibration RNA and GapDH (reduced glyceraldehydes-phosphate dehydrogenase) as data of internal contrast gene normalization processing experiments, relative quantitative detection is carried out on the level of mRNA (messenger ribose nucleic acid) of ERCC1 of a sample tissue through a TaqMan probe method. The kit can be used for detecting the expression quantity of the ERCC1 at a level of mRNA and can reflect the gene expression level more truly; the detection data of the fluorescent quantitative PCR method is output by a machine, thus avoiding subjective identification of people and being more objective; the cultured cells are taken as the external RNA calibrator, and the whole process and the fluorescent quantitative PCR experiment are synchronous, so that the errors caused by the experiment process is reduced, the determination of the clinical cut-off value is realized, furthermore, the fluorescent quantitative PCR method for detecting the level of mRNA of ERCC1 is realized to be used in clinic.

Description

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Claims

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Application Information

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Owner JIANGSU KANGKE BIOTECH
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