Single-cell phenotype database system and search engine

A search engine and single-cell technology, applied in the direction of electrical digital data processing, special data processing applications, instruments, etc., to achieve the effect of speeding up research, easy popularization of the market, and real-time

Active Publication Date: 2014-10-01
QINGDAO INST OF BIOENERGY & BIOPROCESS TECH CHINESE ACADEMY OF SCI
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Problems solved by technology

At present, there are few relevant single-cell phenotype database systems and search engines based on single-cell phenotype databases in China,

Method used

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  • Single-cell phenotype database system and search engine
  • Single-cell phenotype database system and search engine

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Experimental program
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Embodiment Construction

[0016] exist figure 1 Among them, the basic configuration of the software platform of the single-cell phenotype database system is: Windows XP operating system, pre-installed MySQL database.

[0017] exist figure 2 Among them, the basic hardware configuration of the database system structure and relationship is: a supercomputer including GPGPU (General Purpose Parallel Processor) operating hardware, at least two CPU cores, a computing speed of at least 2Ghz, a memory of at least 2GB, and a hard disk of at least 50G. High-speed interconnection between CPU, GPGPU and storage.

[0018] exist image 3 Among them, the primary database system prototype architecture diagram depends on the establishment of the MySQL database.

[0019] exist Figure 4 Among them, the basic configuration of the software platform based on the search engine structure diagram of the single-cell phenotype database is: Windows XP operating system, pre-installed MySQL database and single-cell phenotype ...

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Abstract

A "single-cell phenotype database system and a search engine" are a single-cell phenotype database system and a search engine method which is provided by aiming at a problem that a single-cell phenotype research is difficult to carry out since few relevant single-cell phenotype databases and single-cell phenotype database search engines exist in China at present. A main module of the single-cell phenotype database system and the search engine mainly consists of the single-cell phenotype database and the search engine; the single-cell phenotype database system is suitable for storing the Raman spectrum data of a single cell and a single cell image and has a core of a two-layer database structure and a corresponding data processing method; the search engine based on the single-cell phenotype database system can take the Raman spectrum data of a certain single cell and the single cell image as query data, and the whole single-cell phenotype database is searched to find optimal matching cells so as to obtain the detailed information of the unknown cell.

Description

technical field [0001] The present invention relates to the field of single cell research. Specifically, through a new generation of cell sorting equipment, images and Raman spectrum information of single or group cells (applicable to microorganisms, plants, animals or human cells) are obtained, so as to provide a basis for these The omics analysis, transformation and utilization of cells lay the fundamental foundation. A single cell phenotype database system and search engine established for different types of single cells, serving the fields of single cell research and cell science applications. Background technique [0002] A single cell is the basic unit of life activities. All organisms on earth are composed of single cells or differentiated from single cells. In-depth and systematic research on single cells can not only reveal the essence of life activities in a panoramic manner, but also the specificity and differentiation process of single cells is of great signific...

Claims

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Application Information

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IPC IPC(8): G06F17/30
CPCG06F16/2228G06F16/532
Inventor 任立辉宁康籍月彤王允徐健黄巍
Owner QINGDAO INST OF BIOENERGY & BIOPROCESS TECH CHINESE ACADEMY OF SCI
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