The invention belongs to the technical field of bioinstrumentation and relates to a fluorescence composite amplification system of 30 Y-chromosome STR (Short Tandem Repeat) loca and a kit and application. The following 29 STR loca on Y-chromosomes can be simultaneously amplified: DYS393, DYS570, DYS19, DYS392, DYS549, Y-GATA-H4, DYS391, DYS439, DYS481, DYS635, DYS448, DYS533, DYS456, DYS389I/II, DYS390, DYS438, DYS576, DYS460, DYS458, DYS437, DYS385a/b, DYS643, DYS587, DYS645, DYS531, DYS596, DYS593 and DYS443. In conclusion, the system has the advantages that firstly, the system comprises 30Y-chromosome STR loca of human females, including common sites and low-mutation sites, is unique and novel, large in formation quantity and good in compatibility; secondly, the system is wide in application range, good in directivity, high in precision and applicable to legal medical expert DNA (Deoxyribonucleic Acid) analysis for all material evidence cases with cells of males. By adopting the system, all bioinstrumentation materials with male cells, such as bloodstains, seminal stains, saliva, hair, nails, cartilages and other human body tissues, can be identified, and FTA cards, whole blood, hair with hair follicles, oral cavity swabs and the like can be directly amplified.