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A method and apparatus for collaborative variant selection and therapy matching reporting

A user interface, registered user technology used in clinical testing to reduce the need to cut and paste information and to effectively integrate

Pending Publication Date: 2019-05-21
KONINKLJIJKE PHILIPS NV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, challenges remain in bringing genome sequencing into common use in clinical practice and effectively utilizing genome sequencing data to generate actionable clinical information

Method used

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  • A method and apparatus for collaborative variant selection and therapy matching reporting
  • A method and apparatus for collaborative variant selection and therapy matching reporting
  • A method and apparatus for collaborative variant selection and therapy matching reporting

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Embodiment Construction

[0026] The difficulty in utilizing genomics in clinical practice is the lack of informatics to store, manage, analyze and contextualize this data in a streamlined manner that supports the clinical workflow of clinical specialists such as oncologists and pathologists. The challenge is that there are many treatment options and many clinical trials, and it's difficult to test for one gene at a time. Next-generation sequencing (NGS) platforms offer the opportunity to sequence genomes in a high-throughput manner at a reasonable cost. Algorithms exist that generally convert genomic data into meaningful biological information. Such algorithms are generally suitable for expert bioinformatics users. Clinical specialists spend decades acquiring specific expertise and formulating their solutions to problems and to help patients. In their way of thinking, the informatics tools they use should have a natural flow, keeping in mind the problem to be solved and the relevant information need...

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Abstract

A clinical genomic data processing device includes at least one microprocessor (10) and a non-transitory storage medium (12) storing instructions to implement functions of the device. A user interface(26, 28) receives requests for execution of genomic workflows and to display output generated by the execution of the genomic workflows. A genomic workflow manager manages an asynchronous messaging queue (24) and manages the execution of the genomic workflows. Service providers (20) perform jobs associated with the genomic workflows. The genomic workflow manager communicates with the service providers by messages exchanged via the asynchronous messaging queue to manage the execution of the genomic workflows via jobs performed by the service providers. The service providers may include a genomic processing service provider (201), an annotation service provider (202), an aberration prioritization service provider (203), a reporting service provider (204), a clinical trial matching service provider (205), and so forth.

Description

[0001] This application claims the benefit of U.S. Provisional Application No. 62 / 401319, filed September 29, 2016, which is hereby incorporated by reference in its entirety . technical field [0002] The following generally relates to the field of clinical testing, the field of genomic testing, the field of genomic data processing architectures, and related fields. Background technique [0003] Genomics is a powerful tool for medical diagnosis, treatment selection, and other clinical tasks. Over the past 15 years, since the first Atlas of the Human Genome was published, the introduction of next-generation sequencing has enabled interrogation of structural and functional changes across the entire human genome. The cost of sequencing has fallen over time at a rate far exceeding the rate of miniaturization of integrated circuits predicted by Moore's Law. Recent major achievements such as the 1000 Genomes, which map human genomic variation across different ethnic groups, and ...

Claims

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Application Information

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IPC IPC(8): G16B20/00G16B50/00
CPCG16B20/00G16B50/00G16B30/10G16B20/20G16B30/20G16H10/20G16B50/50G16B45/00G16B30/00
Inventor N·迪米特罗娃R·所罗门K·帕娅尔M·达尼斯曼-塔沙尔M·本特祖尔N·沙拉比S·尤希姆A·R·曼科维赫V·阿格拉瓦尔J·古I·弗里德曼K·沃良斯基
Owner KONINKLJIJKE PHILIPS NV
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