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A cell separation control apparatus according to an embodiment of the present disclosure may include a separation disc having a plurality of chambers and configured to separate a target material from a sample by means of a centrifugal force generated by a rotation, a printed circuit board coupled to the separation disc and having heating terminals configured to transfer heat to valves in channels that connect the plurality of chambers of the separation disc, and a plurality of pressing parts provided on the printed circuit board and configured to transfer heat from the heating terminals to the valves by pressing the heating terminals toward the valves.