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Tissue molecular signatures of kidney transplant rejections

a kidney transplant and molecular signature technology, applied in biochemistry apparatus and processes, instruments, ict adaptation, etc., can solve problems such as hampered the therapeutic potential of kidney transplantation

Inactive Publication Date: 2020-12-31
THE SCRIPPS RES INST +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Unfortunately, graft losses due to allograft dysfunction or other uncertain etiologies have greatly hampered the therapeutic potential of kidney transplantation.

Method used

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  • Tissue molecular signatures of kidney transplant rejections
  • Tissue molecular signatures of kidney transplant rejections
  • Tissue molecular signatures of kidney transplant rejections

Examples

Experimental program
Comparison scheme
Effect test

example 1

ially Expressed Genes Associated with Kidney Transplant Rejections

[0121]This Example describes global analysis of gene expressions in kidney transplant patients with different types of rejections or injuries.

[0122]A total of biopsy-documented 274 kidney biopsy samples from the Transplant Genomics Collaborative Group (TGCG) were processed on the Affymetrix HG-U133 PM only peg microarrays. The 274 samples that were analyzed comprised of 4 different phenotypes: Acute Rejection (AR; n=75); Acute Dysfunction No Rejection (ADNR; n=39); Chronic Allograft Nephropathy (CAN; n=61); and Transplant Excellent (TX; n=99).

[0123]Signal Filters: To eliminate low expressed signals we used a signal filter cut-off that was data driven, and expression signals

[0124]4-Way AR / ADNR / CAN / TX classifier: We first did a 4 way comparison of the AR, ADNR, CAN and TX samples. The samples comprised of four d...

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Abstract

By a genome-wide gene analysis of expression profiles of known or putative gene sequences in kidney biopsy samples, the present inventors have identified a consensus set of gene expression-based molecular biomarkers for distinguishing kidney transplantation patients who have Acute Rejection (AR), Acute Dysfunction No Rejection (ADNR), Chronic Allograft Nephropathy (CAN), or Transplant Excellent / Normal (TX). These molecular biomarkers are useful for diagnosis, prognosis and monitoring of transplantation patients.

Description

CROSS-REFERENCE TO RELATED APPLICATIONS[0001]This application is a continuation of U.S. patent application Ser. No. 15 / 313,215 (filed Nov. 22, 2016, now pending), which is a § 371 U.S. national phase filing of PCT International Patent Application No. PCT / US2015 / 032,195 (filed May 22, 2015, now expired), which claims the benefit of priority to U.S. application Ser. No. 14 / 481,167 (filed Sep. 9, 2014, now abandoned); to International Application No. PCT / US2014 / 054735 (filed Sep. 9, 2014, now expired); to U.S. Provisional Application No. 62 / 029,038 (filed Jul. 25, 2014, now expired); to U.S. Provisional Application No. 62 / 001,889 (filed May 22, 2014, now expired); to U.S. Provisional Application No. 62 / 001,902 (filed May 22, 2014, now expired); and to U.S. Provisional Application No. 62 / 001,909 (filed May 22, 2014, now expired). Each of the aforementioned priority applications is incorporated by reference herein in its entirety.STATEMENT CONCERNING GOVERNMENT SUPPORT[0002]This inventio...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12Q1/6883G16H50/30G16B25/00G16B40/00G01N33/68C12Q1/6881G16H20/40G16B25/10G16B40/20
CPCG16B25/00G16H50/30C12Q2600/112G16B40/00C12Q2600/16C12Q2600/158G16H20/40G01N33/6893Y02A90/10C12Q2600/136C12Q2537/165C12Q1/6881C12Q2600/118C12Q1/6883G01N2800/245G16B40/20G16B25/10G16B20/00
Inventor SALOMON, DANIEL R.KURIAN, SUNILABECASSIS, MICHAEL M.
Owner THE SCRIPPS RES INST
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