The invention discloses a seedling planting method in an alkaline land. The method comprises the steps of: digging planting pits, laying a salt and alkali isolating layer, laying a water storage layer, laying a percolation layer, backfilling planting soil and cultivating seedlings. By adopting the seedling planting method in the alkaline land disclosed by the invention, the salt and alkali are effectively isolated, drought defying and waterlogging control are realized, the survival rate of the seedling is improved, and the normal growth of the seedlings is ensured; large-area consolidation of the alkaline land is not needed, and only the local plot, in which the seedlings are planted, is needed to be consolidated, so that the seedlings can be planted; and the method is simple, feasible and worthy of popularizing.