The invention discloses a synthesis method of (2S, 3S, 4S)-5-(3, 4-diamino-thiophane-2-group) valeric acid, while prior method has long reaction and partial decomposition of product in reaction caused by concentrated halogen acid, to affect the quality of d-biotin. The invention processes reflux reaction on diethyl malonate condensate, cyano compound or bis-benzyl biotin in halogen acid, adds glacial acetic acid later, refluxes until no single-benzyl biotin and d-biotin exist in product, concentrates to remove unreacted halogen acid and glacial acetic acid, adds absolute ethyl alcohol, freezes to 0-5DEG C, adds lithium hydrate to neutralize and precipitate white solid crystals, filters, poaches filter cake via absolute ethyl alcohol, and dries to obtain target product. The invention has short reaction and controllable reaction end, which leads glacial acetic acid in later reaction to effectively avoid diamino acid being decomposed in concentrated halogen acid, to improve product yield and content.