Application of joint synovial fluid biomarker ADAMDEC1
A bio-marker, synovial fluid technology, applied in biological material analysis, instruments, measurement devices, etc., can solve problems such as unknown physiological functions
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Embodiment 1
[0017] Bioinformatics data screening for diagnostic biomarkers that differentiate OA and RA
[0018] Download 7 gene chip data (GSE55235, GSE55457, GSE55584, GSE12021, GSE1919, GSE7669 and GSE36700) and one RNA sequencing data (GSE89408) from NCBI GEO, and these 8 data files contain synovial tissues of OA and RA patients Gene expression data. The bioinformatics data screening of the above 8 data sets was performed using the "Bioconductor" data operating environment of the R language. Firstly, the quality inspection and analysis of each data set is carried out. If the data files in each data set do not show RNA degradation, the quality inspection is qualified. Then standardize each data set, use LIMMA, edgeR, and DESeq2 data analysis packages to find out the genes with differential expression in the synovial tissues of OA and RA patients from the above 8 data sets, and perform ROC analysis on the differentially expressed genes to screen out potential distinguishing OA and RA ...
Embodiment 2
[0020] Diagnostic performance of ADAMDEC1 in differentiating RA from OA patients
[0021] 1. Experimental samples and reagents
[0022] Unless otherwise specified, the reagents and materials used in the following examples are commercially available.
[0023] ADAMDEC1 protein assay reagent;
[0024] ADAMDEC1 ELISA kit was purchased from CUSABIO company.
[0025] 2. Experimental method
[0026] 1. Collection of human joint synovial fluid samples
[0027] Collect synovial fluid samples from 30 patients with OA and 14 patients with RA combined with OA who underwent joint replacement in Dongyang People's Hospital, labeled and stored in -80°C refrigerator for later use.
[0028] 2. Determination of the content of the target protein in the joint synovial fluid by ELISA
[0029] The content of ADAMDEC1 in the synovial fluid of the joints was determined strictly according to the procedure of the ELISA kit.
[0030] 3. Data processing method
[0031] The ROC curve of the target p...
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