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Genetic map quality evaluation method and device and computer readable storage medium comprising genetic map quality evaluation method and device

A genetic map and quality assessment technology, applied in the field of computer readable storage medium and genetic map quality evaluation, can solve problems such as insufficient genetic map quality evaluation system

Pending Publication Date: 2021-09-10
北京果壳生物科技有限公司
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Problems solved by technology

[0009] The purpose of the present invention is to provide a method and device for evaluating the quality of genetic maps, which solves the problem that the current quality evaluation system for genetic maps is not perfect

Method used

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  • Genetic map quality evaluation method and device and computer readable storage medium comprising genetic map quality evaluation method and device
  • Genetic map quality evaluation method and device and computer readable storage medium comprising genetic map quality evaluation method and device
  • Genetic map quality evaluation method and device and computer readable storage medium comprising genetic map quality evaluation method and device

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Embodiment Construction

[0046] The principles and features of the present invention are described below in conjunction with the accompanying drawings, and the examples given are only used to explain the present invention, and are not intended to limit the scope of the present invention.

[0047] The invention provides a method and device for evaluating the quality of the genetic map, which solves the problem that the current quality evaluation system of the genetic map is not perfect enough.

[0048] The implementation of the present invention will be described in detail below with examples, so as to fully understand and implement the implementation process of how the present invention uses technical means to solve technical problems and achieve technical effects.

[0049] The general idea of ​​the implementation method in this application example is as follows:

[0050] A method for assessing the quality of a genetic map, characterized in that the method includes the statistics of mark indicators on...

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Abstract

The invention discloses a genetic map quality evaluation method and device and a computer readable storage medium comprising the genetic map quality evaluation method and device, and the method comprises the steps: map marker index statistics on a genetic map, genetic map and genome physical map collinearity analysis, genetic map recombination heat map analysis, genetic map recombination hot spot analysis, and analysis of partial segregation region of the genetic map. After an upstream genetic map biological information analysis result is processed, genetic map indexes are evaluated again, meanwhile, a method for identifying a recombination hot spot area and a partial separation area is provided, and the problem that an existing genetic map quality evaluation system is imperfect is solved.

Description

technical field [0001] The invention relates to the field of bioinformatics, in particular to a method and device for evaluating the quality of a genetic map and a computer-readable storage medium containing the same. Background technique [0002] A genetic map, also known as a genetic linkage map, is a map that preserves the relative genetic positions of genetic markers on the genome. The theoretical basis for constructing a genetic map is the recombination exchange during meiosis. From early-generation sequencing microsatellite markers to current high-throughput next-generation sequencing polymorphic molecular markers, the detection of genetic markers on genetic maps is more accurate, the number is larger, the coverage of the genome is higher, and most hybrids can be reflected Genetic recombination information in experiments, and now genetic maps have been widely used in quantitative trait mapping, genome-assisted assembly, and species evolution research. Especially in th...

Claims

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Application Information

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IPC IPC(8): G16B20/00
CPCG16B20/00
Inventor 马玉昆李伟华张晓伟孙琼琳李峰峰王帅
Owner 北京果壳生物科技有限公司
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