Pancreas cancer personalized prognosis evaluation method based on multi-gene expression characteristic spectrum

A technique for expression signature, prognostic assessment with applications in biotechnology and medicine

Active Publication Date: 2018-10-12
KUNMING INST OF ZOOLOGY CHINESE ACAD OF SCI
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Problems solved by technology

However, most reports only use single or several genes, can only classify a group, and can only qualitat

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  • Pancreas cancer personalized prognosis evaluation method based on multi-gene expression characteristic spectrum
  • Pancreas cancer personalized prognosis evaluation method based on multi-gene expression characteristic spectrum
  • Pancreas cancer personalized prognosis evaluation method based on multi-gene expression characteristic spectrum

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Embodiment Construction

[0063] The implementation of the present invention will be described in detail below with examples, so as to fully understand and implement the implementation process of how the present invention uses technical means to solve technical problems and achieve technical effects.

[0064] The invention discloses a method for evaluating the individualized prognosis of pancreatic cancer based on a polygene expression profile, which comprises the following steps:

[0065] Step 1. Obtain a list of pancreatic cancer prognosis risk genes and gene weights, specifically:

[0066] Step 1.1, download pancreatic cancer patient tumor tissue and paracancerous tissue transcriptome data and clinical data from Genomic Data Commons Data Portal database, obtain pancreatic cancer patient tumor tissue gene expression profile FPKM( F fragments P er K ilobase of transcript per M million fragments mapped) values, logarithmic transformation (log2).

[0067] Step 1.2, set the total number of samples as...

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Abstract

The invention discloses a pancreas cancer personalized prognosis evaluation method based on multi-gene expression characteristic spectrum. The pancreas cancer personalized prognosis evaluation methodbased on multi-gene expression characteristic spectrum includes the following steps: acquiring a pancreas cancer prognosis risk gene list and gene weight; constructing a prognosis evaluation model bymeans of pancreas cancer patient tumour tissue transcriptome and survival data; according to the gene expression spectrum of the pancreas cancer patient tumour tissue, calculating the risk score of the patient; and according to the risk score of the patient, calculating the annual survival probability of the patient. The annual survival probability of the pancreatic cancer patient, obtained through the pancreas cancer personalized prognosis evaluation method based on multi-gene expression characteristic spectrum is highly consistent with the actual annual survival rate (linear correlation R2 =0.980, P value = 9.76E-17). Therefore, it is proved that the pancreas cancer personalized prognosis evaluation method based on multi-gene expression characteristic spectrum has very high prediction accuracy, and highly matches the practical survival state. At the same time, for each tumour patient, the pancreas cancer personalized prognosis evaluation method based on multi-gene expression characteristic spectrum can provide a special survival probability curve for the patient.

Description

technical field [0001] The invention belongs to the fields of biotechnology and medicine, and in particular relates to a method for evaluating the individualized prognosis of pancreatic cancer based on a polygene expression profile. Background technique [0002] Pancreatic cancer is a malignant tumor with high risk worldwide. Pancreatic cancer patients generally have a short average survival time. Statistics show that the number of deaths from pancreatic cancer in men and women in the world differs little. Global Burden of Disease (GBD) data shows that in 2016, the number of people suffering from pancreatic cancer worldwide was 360,000, of which 57,000 were in China. In 2016, the number of deaths of pancreatic cancer patients worldwide was 410,000, accounting for 0.74% of the total deaths. In 2016, the number of patients who died in China exceeded 72,000, accounting for 0.74% of the total number of deaths. The statistical results show that from 1990 to 2016, the prevalen...

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Application Information

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IPC IPC(8): G16H50/30G06F19/24G06F19/12G06F19/18
CPCG16B5/00G16B20/00G16B40/00G16H50/30
Inventor 李功华李文兴黄京飞赵旭东代绍兴
Owner KUNMING INST OF ZOOLOGY CHINESE ACAD OF SCI
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