Method for detecting Zika virus by using RPA technology and special complete set of reagent for method
A Zika virus and a complete set of technology, applied in the biological field, can solve the problems of inapplicable rapid detection of sudden infectious diseases, large instrument size, long detection time, etc., and achieve great practical value, high sensitivity, and good specificity
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Embodiment 1
[0063] Embodiment 1, the preparation of the kit reagent that detects Zika virus
[0064] 1. Synthesis of primers and probes
[0065] The whole genome sequence of Zika virus was downloaded from NCBI, and the MEGA5.0 software was used for comparative analysis. After analysis, the NS1 gene (Genebank number: KU509998.1) was selected as the target gene. According to the nucleotide sequence of the NS1 gene, primers and probes based on RPA technology are designed. The design principles are as follows: (1) The length of the primer is 30-35bp; (2) The length of the probe is 46-52bp, from 5' to 3' Include DNA fragment A, tetrahydrofuran (THF) (tetrahydrofuran is the cleavage site of exo) and DNA fragment B in turn; DNA fragment A is a single-stranded DNA molecule composed of 30-35 nucleotides; DNA fragment A and DNA fragment B are partially identical to the two segments on the NS1 gene, and the two segments have no overlap on the NS1 gene; the deoxyribonucleotide immediately upstream ...
Embodiment 2
[0077] Embodiment 2, sensitivity
[0078] The PBS buffers in the following examples are all pH 7.2, 0.01 mM PBS buffers.
[0079] 1. Detection of virus titer
[0080] 1. Inoculate the Zika virus into a culture flask lined with C6 / 36 cells and place it at 33°C, 5% CO 2 cultured in an incubator. When the proportion of cytopathic cells in the culture flask reached 75%, the culture flask was frozen and thawed once at -70° C., and then the cell culture supernatant was collected.
[0081] 2. Take the cell culture supernatant collected in step 1, and perform a 10-fold serial dilution with PBS buffer to obtain a supernatant dilution.
[0082] 3. Take a 96-well plate containing C6 / 36 cells growing to the logarithmic phase (each well contains 10 4 C6 / 36 cells), add 100 μL supernatant dilution obtained in step 2 to each well (repeat 4 wells for each concentration), place at 33°C, 5% CO 2 Cultured in the incubator for 5 days.
[0083] Take a 96-well plate containing C6 / 36 cells grow...
Embodiment 3
[0098] Embodiment 3, specificity
[0099] Japanese encephalitis virus SC04-17 strain was recorded in the following literature: Zheng Yang, Kang Xiaoping, Li Yuchang, Wu Xiaoyan, Zhang Xiaosong, Yang Yinhui, Expression and purification of Japanese encephalitis virus EDⅢ protein and its application in Array-ELISA method, Zhonghua Journal of Microbiology and Immunology, 2013, 33, 954-959. Japanese encephalitis virus SC04-17 strain is hereinafter referred to as Japanese encephalitis virus.
[0100] Dengue virus is described in Microarray hybridization for assessment of the genetic stability of chimeric West Nile / dengue 4virus, Laassri M, Bidzhieva B, Speicher J, Pletnev AG, Chumakov L., J.Med.Vorol., 2011 May; 83(5 ); 910-920.
[0101] Tick-borne encephalitis virus MDJ01 strain was recorded in the following literatures: Huo Naifan, Kang Xiaoping, Hu Yi, Li Yuchang, Li Jing, Zhang Yu, Ran Xin, Jia Jia, Cao Xuefeng, Yang Yinhui, Tick-borne encephalitis virus envelope glycoprotein c...
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