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Automated isolation and chemical reaction(s) of nucleic acids

a nucleic acid and automatic technology, applied in biochemistry apparatus and processes, laboratories, instruments, etc., can solve the problems of further risk of contamination in the subsequent analysis of isolated nucleic acids, and achieve the effects of shortening the time for the assay, reducing the volume of the sample processing, and increasing efficiency

Inactive Publication Date: 2017-09-07
BIOCHAIN INST
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

The patent describes a method for extracting and modifying nucleic acid in a single closed system, using magnetic beads and a bisulfite conversion reaction. The method is automated and efficient, with a reduced sample processing time. The isolated nucleic acid can be used for various applications such as methylation detection, disease diagnosis, and forensics testing. The method can be performed using a single closed automated system, which includes a reaction tube and magnetic beads. The isolated nucleic acid is then reacted with a bisulfite conversion reagent, which is overlaid with mineral oil. The converted nucleic acid is then eluted from a second magnetic particle. The method is efficient, fast, and can be performed with a small sample size.

Problems solved by technology

The subsequent analysis of isolated nucleic acid is at further risk for introduction of contaminants during the manual set-up of the reaction / treatment of the isolated nucleic acids.

Method used

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  • Automated isolation and chemical reaction(s) of nucleic acids
  • Automated isolation and chemical reaction(s) of nucleic acids
  • Automated isolation and chemical reaction(s) of nucleic acids

Examples

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working examples

[0088]This invention has adapted a manual sample preparation for converting nucleic acids into methylated nucleic acids within an automated sample preparation system for methylating nucleic acids. The manual method is currently available as a sample preparation part of a diagnostic kit for colorectal cancer offered by Epigenomics. An automated and a manual method for sample preparation for methylated nucleic acids were conducted side by side to illustrate the improvements in nucleic acid sample isolation integrated with bisulfite conversion of the isolated nucleic acid as described herein for the disclosed invention. Both methods obtained similar results indicating that the automated method for sample preparation for methylated nucleic acids can be an improved method to the manual method.

[0089]The comparison process included sample collection and handling. Both a manual method to prepare methylated nucleic acid from plasma and an automated system to prepare methylated nucleic acid f...

examples

[0097]I. Automated Sample Preparation System to Prepare Methylated Nucleic Acid from Plasma

[0098]The automated sample preparation system is performed on the AnaPrep device from BioChain. Reagent cartridges, reaction reservoirs, reaction, sample and converted nucleic acid tubes are additional consumables to be provided to the user.

[0099]A. Pre-fill reagent cartridges are available, built to order depending on the conversion reaction to be performed in an integrated manner following isolation of nucleic acid for a test sample.

[0100]Reagent Cartridge contents for isolation of nucleic acid from a sample are comparable in composition to the reagents within the AnaPrep Blood DNA Extraction Kit 200 or 1200 (BioChain, P / N Z1322001 or Z1322002, respectively), AnaPrep Bacterial DNA Extraction Kit (Z1322006), and AnaPrep FFPE DNA Extraction Kit (Z1322009) kits except as noted:[0101]1. Ethanol[0102]2. Tip Wash Buffer[0103]3. Wash A Buffer[0104]4. Magnetic Beads[0105]5. Lysis buffer[0106]6. Lysi...

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Abstract

The present teachings relate to methods, kits and devices for performing automated sequential nucleic acid isolation and conversion / purification in a single closed system. In various embodiments, the present teaching enable a user to (i) load a device with test samples, reagents and consumables; (ii) select or program the device for the desired nucleic acid isolation and subsequent chemical treatment and / or conversion reaction(s) without further user intervention; and recovering the isolated and treated and / or converted nucleic acid at the conclusion of the program once the device is activated.

Description

CROSS-REFERENCE TO RELATED APPLICATION[0001]This application is a continuation in part of U.S. patent application Ser. No. 14 / 517,759, filed Oct. 17, 2014, which is incorporated herein by reference.FIELD[0002]The present teachings relate to methods, kits and a device for automated nucleic acid isolation and conversion / purification in a single closed system.INTRODUCTION[0003]Isolation of nucleic acids from biological samples provides reliable results when the nucleic acids are free of contaminating foreign nucleic acids, nucleases that degrade nucleic acids and chemicals that interfere with downstream analysis of the isolated nucleic acids. The subsequent analysis of isolated nucleic acid is at further risk for introduction of contaminants during the manual set-up of the reaction / treatment of the isolated nucleic acids. Thus, there remains a need in the art for methods and devices that facilitate the isolation and subsequent reaction / treatment of isolated nucleic acids in an automate...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12N15/10G01N1/10C12Q1/68B01L7/00
CPCC12N15/1013C12Q1/6806G01N1/10B01L7/52B01L3/50851G01N35/0098B01L2300/0858G01N2035/00564C12Q2523/125C12Q2547/101
Inventor HAN, XIAOLIANGWANG, JAMES JIANMINGLU, TONG
Owner BIOCHAIN INST