The invention relates to a fluorine-silicon modified acrylate emulsion and a preparation method thereof. A hard monomer, a soft monomer, a cross-linking monomer, an organosilicon monomer, a fluorine-containing monomer and a responsive emulsification monomer are selected to realize one-time synthesis of the emulsion under the action of an initiator. The method comprises the following steps: dissolving the initiator in water, uniformly mixing the hard monomer, the soft monomer, the cross-linking monomer, the organosilicon monomer and the fluorine-containing monomer, heating an emulsifier and water in a four-neck flask to 70-90DEG C, slowly adding the above obtained uniformly-mixed monomer mixture phase and 90% of the above obtained initiator solution in a dropwise manner in 1-3h at 70-90DEG C under a rotating speed of 200-400r/min, maintaining the temperature unchanged in a range of 70-90DEG C for 1-3h after the dropwise addition ends, adding the remaining 10% of the initiator solution in a dropwise manner in the temperature maintaining process, cooling to 50DEG C or below, and adding ammonia water to adjust the pH value to 6.5-8. The fluorine-silicon modified acrylate emulsion integrates respective advantages of silicon and fluorine polymerse, and is suitable for dye migration resistance, water resistance, oil resistance, fouling resistance, fog resistance and self-cleaning function.