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Compounds for use in screening methods for spinal muscular atrophy

a spinal muscular atrophy and compound technology, applied in the field of pharmaceutical active compounds, can solve the problems of insufficient levels, cells were determined to be unsuitable for high-throughput screening, and compounds may provide limited benefits, so as to increase the expression of smn2 and increase the expression

Inactive Publication Date: 2016-02-25
UNIV OF MASSACHUSETTS +2
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

The patent is about compounds and methods for treating spinal muscular atrophy (SMA) by increasing the production of a protein called full-length survival of motor neuron (SMN). The compounds can increase the activity of a gene called SMN2, resulting in increased expression of full-length SMN transcripts. This can lead to improved motor function in patients with SMA.

Problems solved by technology

SMA is caused by insufficient levels of the survival motor neuron (SMN) protein.
These activators are non-specific and will alter transcription of many genes so long-term safety has been questioned.
However, type I severe SMA is fatal and short-term administration of such compounds may provide limited benefits.
These cells were determined to be unsuitable for high-throughput screening (HTS).

Method used

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  • Compounds for use in screening methods for spinal muscular atrophy
  • Compounds for use in screening methods for spinal muscular atrophy
  • Compounds for use in screening methods for spinal muscular atrophy

Examples

Experimental program
Comparison scheme
Effect test

example 1

[0300]In this Example, the assay method of the present disclosure was utilized to identify compounds that increase SMN2 expression.

Materials and Methods

Cloning

[0301]The luciferase minigene from previous reporter vectors SMN1-luc (T-luc) or SMN2-luc (C-luc) was shortened by digestion with Sma I and Swa I to remove 2 kB from intron 6. The SMN exon 1-5 fragment was generated by PCR from human cDNA (exon 1 forward: ccacaaatgtgggagggcgataacc (SEQ ID NO: 1) and exon 6 reverse: tatctcgagtggtccagaaggaaatggaggcagcc (SEQ ID NO: 2)). The SMN promoter elements were from p3.4T and p3.4C SMN (Monani et al., Promoter analysis of the human centromeric and telomeric survival motor neuron genes (SMNC and SMNT), Biochim Biophys Acta 1999, 1445 (3), 330-336). These were combined into pIRES cloning vector (BD Clontech) at the multiple cloning site. The entire reporter fragment was excised from pIRES and ligated into a pCEP4 (Invitrogen) plasmid that also expressed renilla luciferase from nucleotides 299...

example 2

[0342]In this Example, compounds were tested using SMN2 reporter cells. Particularly, over >150,000 compounds were tested using SMN2 reporter cells. Secondary assays were performed to measure SMN protein levels using SMA type 1 patient-derived fibroblasts (3813 cells) by Western blot, gem counts, and quantitative RT-PCR of SMN transcripts.

[0343]Two of the compounds, LDN-75654 and LDN-76070, were further tested. Analogs of both were synthesized and characterized first in the SMN2-luc reporter assays and later by Western blot or gem count using 3813 SMA fibroblasts (FIGS. 25A and 25B). Those compounds that were validated and had tractable chemistry progressed to a synthetic phase in which scaffolds are modified and their properties evaluated. The compounds identified by this iterative process are included in this application.

[0344]Seventy-six (76) LDN 75654 analogs were tested to explore three different regions of the molecule, including introducing a hydroxyl group to various aliphat...

example 3

[0345]Forty eight (48) LDN-76070 analogs were evaluated. Exemplary compounds are shown below:

Modifications of the pendent phenyl were examined. In some embodiments, the 2,5-dihalo substituted compounds showed activity. The 2,5-dihalo substituted compounds had improved activity, such as LDN-212351. The change of bromine to chlorine increased stability, which may be advantageous. Not wishing to be limited by theory, the increased stability could be due to C—Cl bonds being stronger than C—Br bonds. LDN-212351 demonstrated a t1 / 2 of 45 min in mouse liver microsomes. Incorporation of an additional nitrogen atom into the central ring to generate urea LDN-212391 was tolerated (see FIG. 25A).

[0346]Exemplary results are listed in Table 8, below.

TABLE 8Exemplary compound test results.7565421201421201621409876070212351212391214085++++++++++++++++++++++++Potency LucReporter++++++++++++++++++++++Activity LucReporter++???++++++++++?Fibroblasts(n = 16)(n = 4)(n = 4)−+++++++?++++++++++?IP(n = 16)(n...

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Abstract

Disclosed herein are compositions and methods for treatment of spinal muscular atrophy (SMA). In certain embodiments, compounds are provided that increase full-length survival of motor neuron (SMN) protein production by an SMN2 gene.

Description

CROSS REFERENCE TO RELATED APPLICATIONS[0001]This application is a continuation application of U.S. Non-provisional application Ser. No. 13 / 941,099 filed Jul. 12, 2013, which claims priority to U.S. Provisional Patent Application No. 61 / 671,425 filed on Jul. 13, 2012, both of which are hereby incorporated by reference in their entireties.STATEMENT OF GOVERNMENT SUPPORT[0002]This invention was made with government support under grant numbers HD064850 and NS064349 awarded by the National Institutes of Health. The U.S. Government has certain rights in the invention.INCORPORATION OF SEQUENCE LISTING[0003]A paper copy of the Sequence Listing and a computer readable form of the sequence containing the file named “31377-18 (IURTC 12111)_ST25.txt”, which is 54,433 bytes in size (as measured in MS-DOS), are provided herein and are herein incorporated by reference. This Sequence Listing consists of SEQ ID NOS: 1-9.FIELD OF DISCLOSURE[0004]The present disclosure relates to pharmaceutically act...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C07D493/04C07D215/227C07D215/44C07D221/10C07D231/14C07D233/88C07D239/47C07D239/82C07D261/14C07D261/18C07D263/48C07D267/14C07D277/46C07D285/135C07D401/04C07D405/04C07D413/12C07D417/04C07D417/12C07D471/04C07D487/04
CPCC07D493/04C07D267/14C07D413/12C07D261/14C07D231/14C07D285/135C07D277/46C07D263/48C07D233/88C07D239/47C07D417/12C07D215/44C07D471/04C07D417/04C07D215/227C07D487/04C07D221/10C07D405/04C07D401/04C07D239/82C07D261/18C07C311/37C07D261/06C07D213/75C07D405/12C07C2601/08C07C2603/20C07K14/47A61P21/00
Inventor ANDROPHY, ELLIOTCUNY, GREGORY D.CHERRY, JONATHANGLICKSMAN, MARCIE A.
Owner UNIV OF MASSACHUSETTS
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