The invention belongs to the technical field of biological genes, and discloses a method for identifying
RNA interaction
protein based on a Turbo ID technology and an MCP / MS2
system, the method can be used for identifying
protein interacting with
RNA in vitro or
in vivo, and the method specifically comprises the following steps: firstly, respectively constructing
RNA expression vectors inserted with MS2 tags, then constructing
fusion protein vectors expressing MCP-Turbo ID, and finally constructing
fusion protein vectors for expressing MCP-Turbo ID; the method comprises the following steps of: inserting RNA (Ribonucleic Acid) into an MS2 tag, transgenosis into a
plant receptor by utilizing an
agrobacterium tumefaciens mediated genetic transformation method to obtain a transgenic
plant material expressing MCP-Turbo ID, combining the RNA inserted with the MS2 tag with the MCP-Turbo ID
in vivo /
in vitro by utilizing a hybridization or in-vitro incubation method, further enabling the Turbo ID to be adjacent to the RNA, biotinylating the RNA
binding protein, and obtaining a transgenic
plant material expressing the MCP-Turbo ID. And then enriching biotinylated
protein by adopting
streptavidin magnetic beads, and identifying and analyzing through
Western Blot and
mass spectrometry. The method not only solves the problem that the interaction protein of specific RNA in a
living cell environment cannot be effectively identified in the prior art, but also can capture a transient or low-affinity RNA-protein interaction relationship.