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Single-cell phenotype database system and search engine

A search engine and single-cell technology, applied in the direction of electrical digital data processing, special data processing applications, instruments, etc., to achieve real-time matching, speed-up research, and easy popularization of the market

Active Publication Date: 2017-08-29
QINGDAO INST OF BIOENERGY & BIOPROCESS TECH CHINESE ACADEMY OF SCI
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Problems solved by technology

At present, there are few relevant single-cell phenotype database systems and search engines based on single-cell phenotype databases in China, making it important to establish a set of single-cell phenotype database systems and search engines for single-cell research. Practical value

Method used

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  • Single-cell phenotype database system and search engine

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Experimental program
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Embodiment Construction

[0016] exist figure 1 Among them, the basic configuration of the software platform of the single-cell phenotype database system is: Windows XP operating system, pre-installed MySQL database.

[0017] exist figure 2 Among them, the basic hardware configuration of the database system structure and relationship is: a supercomputer including GPGPU (General Purpose Parallel Processor) operating hardware, at least two CPU cores, a computing speed of at least 2Ghz, a memory of at least 2GB, and a hard disk of at least 50G. High-speed interconnection between CPU, GPGPU and storage.

[0018] exist image 3 Among them, the primary database system prototype architecture diagram depends on the establishment of the MySQL database.

[0019] exist Figure 4 Among them, the basic configuration of the software platform based on the search engine structure diagram of the single-cell phenotype database is: Windows XP operating system, pre-installed MySQL database and single-cell phenotype ...

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Abstract

A "single-cell phenotype database system and a search engine" are a single-cell phenotype database system and a search engine method which is provided by aiming at a problem that a single-cell phenotype research is difficult to carry out since few relevant single-cell phenotype databases and single-cell phenotype database search engines exist in China at present. A main module of the single-cell phenotype database system and the search engine mainly consists of the single-cell phenotype database and the search engine; the single-cell phenotype database system is suitable for storing the Raman spectrum data of a single cell and a single cell image and has a core of a two-layer database structure and a corresponding data processing method; the search engine based on the single-cell phenotype database system can take the Raman spectrum data of a certain single cell and the single cell image as query data, and the whole single-cell phenotype database is searched to find optimal matching cells so as to obtain the detailed information of the unknown cell.

Description

technical field [0001] The present invention relates to the field of single cell research. Specifically, through a new generation of cell sorting equipment, images and Raman spectrum information of single or group cells (applicable to microorganisms, plants, animals or human cells) are obtained, so as to provide a basis for these The omics analysis, transformation and utilization of cells lay the fundamental foundation. A single cell phenotype database system and search engine established for different types of single cells, serving the fields of single cell research and cell science applications. Background technique [0002] A single cell is the basic unit of life activities. All organisms on earth are composed of single cells or differentiated from single cells. In-depth and systematic research on single cells can not only reveal the essence of life activities in a panoramic manner, but also the specificity and differentiation process of single cells is of great signific...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G06F17/30
CPCG06F16/2228G06F16/532
Inventor 任立辉宁康籍月彤王允徐健黄巍
Owner QINGDAO INST OF BIOENERGY & BIOPROCESS TECH CHINESE ACADEMY OF SCI
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