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PCR-RFLP identification method for different subgroups of sugarcane white leaf disease phytoplasma

A technology for planting plasmoids and sugarcane, applied in the fields of biochemical equipment and methods, recombinant DNA technology, and microbial assay/inspection, etc., can solve the problems of unestablished identification methods, time-consuming and labor-intensive, and accuracy impact, saving time, The effect of reducing costs and improving accuracy

Active Publication Date: 2019-04-19
SUGARCANE RES INST OF YUNNAN ACADEMY OF AGRI SCI
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Problems solved by technology

[0003] Currently, the distinction between 16SrXI-B and 16SrXI-D subgroups is performed by nested PCR using universal primers (P1 / P7 and R16F2n / R16R2) designed for the phytoplasma 16S rRNA gene, followed by virtual RFLP for nested PCR sequencing. Identification by enzyme digestion analysis, this method requires sequencing and analysis of the product, which is time-consuming and laborious. In addition, errors generated during the sequencing process will also affect the accuracy of the virtual RFLP enzyme digestion analysis results
No method has yet been established for the identification of phytoplasma 16SrXI-B and 16SrXI-D subgroups using actual enzyme digestion

Method used

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  • PCR-RFLP identification method for different subgroups of sugarcane white leaf disease phytoplasma
  • PCR-RFLP identification method for different subgroups of sugarcane white leaf disease phytoplasma

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Embodiment Construction

[0023] The present invention will be described in detail below in conjunction with the examples, and those without special instructions in the examples are conventional methods.

[0024] 1. Total DNA Extraction

[0025] According to the literature "Zhang R Y, Li W F, Huang Y K, et al.Group 16SrXI phytoplasmastrains, including subgroup 16SrXI-B and a new subgroup, 16SrXI-D, are associated with sugar cane white leaf. International journal of systematic and evolutionary microbiology, 2016,6 (1):487-491." method detected the sugarcane leaves infected with the 16SrXI-B subgroup and 16SrXI-D subgroup of the sugarcane white leaf disease phytoplasma, and the 16SrXI-B subgroup infected with the sugarcane white leaf disease phytoplasma and 0.2 g of sugarcane leaves of the 16SrXI-D subgroup respectively, using the plant genomic DNA extraction kit (taking the Easy Pure plant Genomic DNAKit plant DNA extraction kit from Beijing Quanshijin Biotechnology Company as an example) to extract the...

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Abstract

The invention relates to a PCR-RFLP identification method for different subgroups of sugarcane white leaf disease phytoplasma. A sugarcane white leaf disease phytoplasma tuf gene is taken as an objectto design a specific primer, a tuf gene fragment is obtained through PCR amplification, then restriction endonuclease Msp I is adopted for digesting the tuf gene fragment obtained through amplification, and the different subgroups of the sugarcane white leaf disease phytoplasma are distinguished through a differentiated RFLP restriction map. The PCR-RFLP identification method for the different subgroups of the sugarcane white leaf disease phytoplasma has the advantages that a sugarcane white leaf disease phytoplasma 16SrXI-B subgroup and a sugarcane white leaf disease phytoplasma 16SrXI-D subgroup can be quickly, accurately and efficiently identified without sequencing, and is important for the pathogen identification and prevention of sugarcane white leaf diseases.

Description

technical field [0001] The invention belongs to the technical field of plant protection, and in particular relates to a PCR-RFLP identification method for sugarcane white leaf disease phytoplasma 16SrXI-B subgroup and 16SrXI-D subgroup. Background technique [0002] Sugarcane white leaf disease is a devastating disease of sugarcane caused by phytoplasma, which can cause huge economic losses to sugarcane and sugar industry. The disease was first discovered in Thailand in 1954, and has now widely occurred in sugarcane-growing countries such as India, Pakistan, Sri Lanka, Laos, Myanmar, Vietnam, the Philippines and Australia. In 2012, the sugarcane white leaf disease phytoplasma was detected for the first time in the Baoshan sugarcane area of ​​Yunnan, my country. Since then, the sugarcane white leaf disease has spread rapidly in the Yunnan sugarcane area, and has now expanded to the Lincang and Pu'er sugarcane areas, posing a serious threat to the sugarcane industry in Yunnan....

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Application Information

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IPC IPC(8): C12Q1/683C12Q1/686C12Q1/689C12N15/11
CPCC12Q1/683C12Q1/686C12Q1/689
Inventor 张荣跃黄应昆李文凤李婕单红丽王晓燕仓晓燕罗志明尹炯
Owner SUGARCANE RES INST OF YUNNAN ACADEMY OF AGRI SCI
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