Large-scale gene sequencing data storage and query system

A gene sequencing and data storage technology, which is applied in file system, digital data protection, electronic digital data processing, etc., can solve the problems of gene sequencing data storage space memory limitation and low data storage efficiency, so as to increase data volume and improve The effect of storage efficiency

Pending Publication Date: 2022-01-07
NAT COMP NETWORK & INFORMATION SECURITY MANAGEMENT CENT
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] The purpose of the present invention is to solve the problem that the storage capacity of gene sequencing data is limited by space and memory and the efficiency of data storage is low in the existing method, and proposes a method that can efficiently store large-scale gene sequencing data and perform gene sequencing data quick search system

Method used

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  • Large-scale gene sequencing data storage and query system
  • Large-scale gene sequencing data storage and query system
  • Large-scale gene sequencing data storage and query system

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specific Embodiment approach 1

[0038] Specific implementation mode 1. Combination figure 1 , Figure 4 and Figure 5 This embodiment will be described. A large-scale gene sequencing data storage and query system described in this embodiment, the system includes a user login module, a data compression module, a file storage module, an interface display module, a database, a data upload module, a data retrieval module and a data approval module module, where:

[0039] The user login module is used for the user to input real-name authentication information, and the input authentication information is matched with the user information stored in the database. If the matching is successful, the user successfully logs in, otherwise the real-name authentication information needs to be re-input for login verification; use The system requires login and registration before uploading and retrieving data;

[0040] The data upload module is used for logged-in users to upload gene sequencing data, and upload the gene ...

specific Embodiment approach 2

[0050] Embodiment 2: This embodiment differs from Embodiment 1 in that the user information is stored in the database in MD5 encrypted format to improve security.

[0051] Other steps and parameters are the same as those in Embodiment 1.

specific Embodiment approach 3

[0052] Embodiment 3: This embodiment differs from Embodiment 1 or Embodiment 2 in that the method for the user to upload gene sequencing data includes single-sample upload and batch-sample upload.

[0053] When uploading a single sample, provide the basic information of the uploader and fill in the data metadata, that is, the auxiliary information of the uploaded sample, which is used to associate with the sequencing data file.

[0054] Other steps and parameters are the same as those in Embodiment 1 or Embodiment 2.

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Abstract

The invention discloses a large-scale gene sequencing data storage and query system, and belongs to the technical field of gene sequencing data storage and query. The problems that in an existing method, the storage amount of gene sequencing data is limited by a space memory, and the data storage efficiency is low are solved. Data storage is achieved through a file storage module and a database, and the data stored in the database is retrieved through the data retrieval module. By compressing the data, the storage efficiency of the data can be improved. Moreover, by compressing the data, the amount of data stored in the limited space can be obviously increased. The system can accommodate 6.1 PB data volume at most, and the database can store 12 million pieces of metadata information at most. The storage and query system can be applied to storage and query of the gene sequencing data.

Description

technical field [0001] The invention relates to the technical field of gene sequencing data storage and query, in particular to a large-scale gene sequencing data storage and query system. Background technique [0002] Traditional data storage systems mainly include three architectures: DAS, NAS and SAN. However, with the massive growth of the number, traditional data storage systems can no longer meet the demand for data storage. Therefore, distributed storage systems emerged as the times require. In recent years, cloud storage systems using distributed architectures have developed rapidly due to their suitability for many new application scenarios. [0003] Large-scale genome sequencing projects usually generate PB-level sequencing data, and the generated sequencing data needs to be recorded in a certain format on the internal or external storage media of the computer. Therefore, the rapid storage and retrieval of these gene sequencing data is a very important issue. Simi...

Claims

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Application Information

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Patent Type & AuthorityApplications(China)
IPC IPC(8): G06F16/172G06F16/14G06F16/174G06F21/60
CPCG06F16/172G06F16/148G06F16/1744G06F21/602
Inventor邢潇卓子寒何跃鹰国宏哲董洪超谷杰铭张翀吕欣润张程鹏张奕欣
OwnerNAT COMP NETWORK & INFORMATION SECURITY MANAGEMENT CENT