The embodiment of the invention provides a logic design segmentation method and system, and belongs to the technical field of logic array prototype system verification, and the method specifically comprises the steps: collecting an RTL design file for describing a logic circuit; performing grammatical analysis processing on the RTL design file, extracting an always object and an assign object in the logic model object, respectively packaging, constructing and generating a hypergraph data structure, performing attribute analysis, processing according to the clock domain information to obtain operation frequency information, and performing associated storage on the clock domain information domain and the operation frequency information and corresponding nodes; and performing segmentation processing to obtain corresponding grouped data. By means of the processing scheme, other processing at the back end of the process is not affected, the segmentation duration is shortened, the segmentation efficiency is improved, meanwhile, efficient, reasonable and correct segmentation processing is conducted on the chip design logic content, the performance and efficiency of design segmentation aregreatly improved, then the process of user front-end function verification is accelerated, and the appearance of integrated circuit products is accelerated.